Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73211361
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1690000 characters in sequence are not A, C, G, or T
File 9 of 240
Found at i:3448814 original size:52 final size:52
Alignment explanation
Indices: 3448729--3448828 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
3448719 GCGCCGCTAA
*
3448729 TGCTCTGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTAGGCT
1 TGCTCTGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTAGGCT
3448781 TGCTCTGGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGCTCTA
1 TGCTCTGGGCTTTAGCGGCGTTTTT-GAAGAAGCGCCGCTAATGCTCTA
3448829 TTTTTAGCGG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 43 0.93
53 3 0.07
ACGTcount: A:0.16, C:0.23, G:0.29, T:0.32
Consensus pattern (52 bp):
TGCTCTGGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTAGGCT
Found at i:3448837 original size:40 final size:41
Alignment explanation
Indices: 3448781--3448899 Score: 150
Period size: 40 Copynumber: 2.9 Consensus size: 41
3448771 GCTCTAGGCT
** *
3448781 TGCTCTGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAA
1 TGCTCTGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
* * * *
3448822 TGCTCT-ATTTTTAGCGGCATTTTTTAAGAAGCGCCGCTAA
1 TGCTCTGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
* *
3448862 TGCTTTGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
1 TGCTCTGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
3448900 AAAAAATATT
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 32 0.50
41 32 0.50
ACGTcount: A:0.18, C:0.21, G:0.27, T:0.34
Consensus pattern (41 bp):
TGCTCTGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
Found at i:3449892 original size:7 final size:7
Alignment explanation
Indices: 3449848--3449921 Score: 51
Period size: 7 Copynumber: 10.4 Consensus size: 7
3449838 TTATTTATCA
*
3449848 TTATAGT
1 TTATGGT
* *
3449855 TTAGGGA
1 TTATGGT
3449862 TTATGGGT
1 TTAT-GGT
* *
3449870 TTAGGGA
1 TTATGGT
*
3449877 TTATTGT
1 TTATGGT
3449884 TTATGGT
1 TTATGGT
3449891 TTATGGT
1 TTATGGT
3449898 TTAATGGT
1 TT-ATGGT
*
3449906 TGA-GGT
1 TTATGGT
*
3449912 TTAAGGT
1 TTATGGT
3449919 TTA
1 TTA
3449922 AGGGTTTAAG
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
6 5 0.10
7 35 0.69
8 11 0.22
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.49
Consensus pattern (7 bp):
TTATGGT
Found at i:3449912 original size:21 final size:21
Alignment explanation
Indices: 3449888--3449927 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
3449878 TATTGTTTAT
* *
3449888 GGTTTATGGTTTAATGGTTGA
1 GGTTTAAGGTTTAAGGGTTGA
3449909 GGTTTAAGGTTTAAGGGTT
1 GGTTTAAGGTTTAAGGGTT
3449928 TAAGATTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (21 bp):
GGTTTAAGGTTTAAGGGTTGA
Found at i:3449929 original size:15 final size:15
Alignment explanation
Indices: 3449909--3449956 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
3449899 TAATGGTTGA
3449909 GGTTTAAGGTTTAAG
1 GGTTTAAGGTTTAAG
*
3449924 GGTTTAAGATTT-AG
1 GGTTTAAGGTTTAAG
* * *
3449938 GATTTAGGGGTTAAG
1 GGTTTAAGGTTTAAG
3449953 GGTT
1 GGTT
3449957 AGGGGATAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.25, C:0.00, G:0.35, T:0.40
Consensus pattern (15 bp):
GGTTTAAGGTTTAAG
Found at i:3451088 original size:13 final size:13
Alignment explanation
Indices: 3451066--3451110 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
3451056 ATCCATACGA
*
3451066 AATCCGGGAGTTG
1 AATCCAGGAGTTG
*
3451079 AATCCTGGAGTTG
1 AATCCAGGAGTTG
*
3451092 AAATCCAAGAGTTG
1 -AATCCAGGAGTTG
3451106 AATCC
1 AATCC
3451111 CTTATAAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (13 bp):
AATCCAGGAGTTG
Found at i:3454160 original size:41 final size:42
Alignment explanation
Indices: 3454015--3454220 Score: 261
Period size: 43 Copynumber: 4.9 Consensus size: 42
3454005 ATTTTTAGGA
* * *
3454015 AAAGCGTCGCTAAAGGTCATGGCCTATAGCGGCGTTTGTGGG
1 AAAGCGTCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGG
* * *
3454057 AAAAGCGCCGCTAAAGGTCTTGGTCTTTAACAGCGTTTGTGGGG
1 -AAAGCGTCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGT-GGG
* *
3454101 ATAGCGTCGCTGAAGGTCTTGGTCTTTAGCGGCGTTT-TGGG
1 AAAGCGTCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGG
* * * *
3454142 AAAGCGTCGCTGAAGGTCTTGGTTTTTAGCGGCGTTTTTGAG
1 AAAGCGTCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGG
* *
3454184 AAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT
1 AAAGCGTCGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
3454221 ATTTTTAAAA
Statistics
Matches: 143, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
41 38 0.27
42 37 0.26
43 65 0.45
44 3 0.02
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (42 bp):
AAAGCGTCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGG
Found at i:3455900 original size:15 final size:15
Alignment explanation
Indices: 3455880--3455910 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3455870 TTTACAAACC
3455880 AAACCCAATCCAATT
1 AAACCCAATCCAATT
*
3455895 AAACCCAATTCAATT
1 AAACCCAATCCAATT
3455910 A
1 A
3455911 CAAAACCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (15 bp):
AAACCCAATCCAATT
Found at i:3456805 original size:8 final size:8
Alignment explanation
Indices: 3456786--3456822 Score: 56
Period size: 8 Copynumber: 4.4 Consensus size: 8
3456776 ATTTTCCTTA
3456786 TATATATTT
1 TATAT-TTT
3456795 TATATTTT
1 TATATTTT
3456803 TATATTTT
1 TATATTTT
3456811 TACTATTTT
1 TA-TATTTT
3456820 TAT
1 TAT
3456823 TTATCCATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 14 0.52
9 13 0.48
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (8 bp):
TATATTTT
Found at i:3456817 original size:17 final size:17
Alignment explanation
Indices: 3456786--3456822 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
3456776 ATTTTCCTTA
3456786 TATATATTTTATATTTT
1 TATATATTTTATATTTT
3456803 TATAT-TTTTACTATTTT
1 TATATATTTTA-TATTTT
3456820 TAT
1 TAT
3456823 TTATCCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (17 bp):
TATATATTTTATATTTT
Found at i:3458048 original size:17 final size:16
Alignment explanation
Indices: 3458026--3458073 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
3458016 TAAATTATTT
* *
3458026 AAAATTGATAAAAATAG
1 AAAATT-ATAAAAAAAC
3458043 AAAATTA-AAAAAAAC
1 AAAATTATAAAAAAAC
3458058 AAAATTAATAAAAAAA
1 AAAATT-ATAAAAAAA
3458074 TAATGATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 12 0.44
16 2 0.07
17 13 0.48
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (16 bp):
AAAATTATAAAAAAAC
Found at i:3458061 original size:15 final size:16
Alignment explanation
Indices: 3458026--3458072 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
3458016 TAAATTATTT
* *
3458026 AAAATTGATAAAAATAG
1 AAAATTAATAAAAA-AC
3458043 AAAATTAA-AAAAAAC
1 AAAATTAATAAAAAAC
3458058 AAAATTAATAAAAAA
1 AAAATTAATAAAAAA
3458073 ATAATGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 9 0.33
16 11 0.41
17 7 0.26
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.19
Consensus pattern (16 bp):
AAAATTAATAAAAAAC
Found at i:3464179 original size:31 final size:32
Alignment explanation
Indices: 3464141--3464202 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
3464131 ACTCTTGTAT
*
3464141 AGAAAGCCC-TTAATTATAAATGGACTTATTA
1 AGAAAGCCCATTAATTATAAACGGACTTATTA
* *
3464172 AGAAAGCCCATTAGTTATAAACGGGCTTATT
1 AGAAAGCCCATTAATTATAAACGGACTTATT
3464203 CTGACCCTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 9 0.33
32 18 0.67
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.31
Consensus pattern (32 bp):
AGAAAGCCCATTAATTATAAACGGACTTATTA
Found at i:3474918 original size:5 final size:5
Alignment explanation
Indices: 3474908--3474934 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
3474898 AATGGGTGGT
3474908 TTGGG TTGGG TTGGG TTGGG TTGGG TT
1 TTGGG TTGGG TTGGG TTGGG TTGGG TT
3474935 TTTTCATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.56, T:0.44
Consensus pattern (5 bp):
TTGGG
Found at i:3485193 original size:19 final size:19
Alignment explanation
Indices: 3485156--3485193 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
3485146 ATTGCCATTT
*
3485156 TTTGTTGTTGTTGTTTTGA
1 TTTGTTGTTGTGGTTTTGA
3485175 TTTGTT-TTGTGGTTATTGA
1 TTTGTTGTTGTGGTT-TTGA
3485194 ATCTGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.08, C:0.00, G:0.26, T:0.66
Consensus pattern (19 bp):
TTTGTTGTTGTGGTTTTGA
Found at i:3486379 original size:8 final size:8
Alignment explanation
Indices: 3486356--3486394 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
3486346 ATTTCCATTT
3486356 TTTTTGTAA
1 TTTTT-TAA
*
3486365 ATTTTTAA
1 TTTTTTAA
3486373 TTTTTTAA
1 TTTTTTAA
3486381 TTTTTTAAA
1 TTTTTT-AA
3486390 TTTTT
1 TTTTT
3486395 CGAATGACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
8 16 0.59
9 11 0.41
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (8 bp):
TTTTTTAA
Found at i:3493221 original size:2 final size:2
Alignment explanation
Indices: 3493214--3493238 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3493204 TTCTTCTTCT
3493214 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
3493239 TCATGATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:3502040 original size:17 final size:18
Alignment explanation
Indices: 3502012--3502045 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
3502002 GTTAGCAATA
3502012 AAATATTTTTAAAAAAAT
1 AAATATTTTTAAAAAAAT
3502030 AAATA-TTTTAAAAAAA
1 AAATATTTTTAAAAAAA
3502046 GAGATACATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATATTTTTAAAAAAAT
Found at i:3502602 original size:25 final size:24
Alignment explanation
Indices: 3502555--3502604 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
3502545 ACTCCCCCAT
* *
3502555 ATATAAAATCTATACAATTTAAAA
1 ATATAAAATCTATAAAATGTAAAA
*
3502579 ATATAAAATATTATAAAATGTAAAA
1 ATATAAAAT-CTATAAAATGTAAAA
3502604 A
1 A
3502605 AAAATTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (24 bp):
ATATAAAATCTATAAAATGTAAAA
Found at i:3504124 original size:3 final size:3
Alignment explanation
Indices: 3504118--3504142 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
3504108 GCATCATCAT
3504118 CAG CAG CAG CAG CAG CAG CAG CAG C
1 CAG CAG CAG CAG CAG CAG CAG CAG C
3504143 GACCAGTGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.32, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:3508126 original size:20 final size:20
Alignment explanation
Indices: 3508101--3508150 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
3508091 TGACTTAAAA
3508101 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
3508121 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
3508138 GTGGTAGTGGATT
1 TTGGTAGTGGATT
3508151 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:3512765 original size:20 final size:20
Alignment explanation
Indices: 3512740--3512789 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
3512730 TGGCTTAAAA
3512740 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
3512760 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
3512777 GTGGTAGTGGATT
1 TTGGTAGTGGATT
3512790 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:3541207 original size:40 final size:40
Alignment explanation
Indices: 3541163--3541243 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
3541153 GTTTTACTTG
* *
3541163 ACCGGTGATATTTATACTTATATATTAAAGTAAGGTTCAA
1 ACCGGTGATATCTATACTTATATATTAAAGTAAGATTCAA
*
3541203 ACCGGTGATGTCTATACTTATATATTAAAGTAAGATTCAA
1 ACCGGTGATATCTATACTTATATATTAAAGTAAGATTCAA
3541243 A
1 A
3541244 GGTTCTTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (40 bp):
ACCGGTGATATCTATACTTATATATTAAAGTAAGATTCAA
Found at i:3541435 original size:29 final size:29
Alignment explanation
Indices: 3541402--3541457 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
3541392 TTTGGTCTCT
*
3541402 ATATTTTTATAATGTTATTAATTAGTTTA
1 ATATTTTTATAATGTAATTAATTAGTTTA
3541431 ATATTTTTATAATGTAATTAATTAGTT
1 ATATTTTTATAATGTAATTAATTAGTT
3541458 CAAATAGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (29 bp):
ATATTTTTATAATGTAATTAATTAGTTTA
Found at i:3542610 original size:16 final size:16
Alignment explanation
Indices: 3542546--3542620 Score: 78
Period size: 16 Copynumber: 4.6 Consensus size: 16
3542536 GAAACCCCAC
*
3542546 GCGAACCCCACATATAT
1 GCGAACCCC-CATATAG
* * *
3542563 GTGAACCCCCATGTAT
1 GCGAACCCCCATATAG
* *
3542579 GCGAGCCTCACATATAG
1 GCGAACC-CCCATATAG
3542596 GCGAACCCCCATATAG
1 GCGAACCCCCATATAG
3542612 GCGAACCCC
1 GCGAACCCC
3542621 TATGTATGTG
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
16 28 0.58
17 20 0.42
ACGTcount: A:0.29, C:0.36, G:0.19, T:0.16
Consensus pattern (16 bp):
GCGAACCCCCATATAG
Found at i:3542638 original size:65 final size:65
Alignment explanation
Indices: 3542546--3542673 Score: 161
Period size: 65 Copynumber: 2.0 Consensus size: 65
3542536 GAAACCCCAC
*
3542546 GCGAACCCCACATATATGTGAACCCCCATGTATGCGAGCCTCACATATAGGCGAACCCC-CATAT
1 GCGAACCCCACATATATGTGAACCCCCATATATGCGAG--TCACATATAGGCGAACCCCACATAT
3542610 AG
64 AG
* * * * * *
3542612 GCGAACCCC-TATGTATGTGAATCCCCATATATGCGAGTCATATGTATGCGAACCCCACATAT
1 GCGAACCCCACATATATGTGAACCCCCATATATGCGAGTCACATATAGGCGAACCCCACATAT
3542674 TTGTGAACTA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
63 16 0.30
64 5 0.09
65 24 0.44
66 9 0.17
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (65 bp):
GCGAACCCCACATATATGTGAACCCCCATATATGCGAGTCACATATAGGCGAACCCCACATATAG
Found at i:3542673 original size:32 final size:31
Alignment explanation
Indices: 3542560--3542673 Score: 93
Period size: 32 Copynumber: 3.5 Consensus size: 31
3542550 ACCCCACATA
* * * *
3542560 TATGTGAACCCCCATGTATGCGAGCCTCACATA
1 TATGCGAACCCCCATATATGCGAG--TCATATG
* * ** *
3542593 TAGGCGAACCCCCATATAGGCGAACCCCTATG
1 TATGCGAACCCCCATATATGCG-AGTCATATG
* *
3542625 TATGTGAATCCCCATATATGCGAGTCATATG
1 TATGCGAACCCCCATATATGCGAGTCATATG
3542656 TATGCGAACCCCACATAT
1 TATGCGAACCCC-CATAT
3542674 TTGTGAACTA
Statistics
Matches: 61, Mismatches: 18, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
31 16 0.26
32 26 0.43
33 18 0.30
34 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (31 bp):
TATGCGAACCCCCATATATGCGAGTCATATG
Found at i:3542733 original size:30 final size:30
Alignment explanation
Indices: 3542697--3542765 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
3542687 GTGAACCCCC
**
3542697 ATGTGCGAAAGCTATATGCGTGAACCTTAT
1 ATGTGCGAAAGCTATATGCGCAAACCTTAT
** *
3542727 ATGTGCGAACTCTGTATGCGCAAACCTTAT
1 ATGTGCGAAAGCTATATGCGCAAACCTTAT
3542757 ATGTGCGAA
1 ATGTGCGAA
3542766 CTCTAAATGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (30 bp):
ATGTGCGAAAGCTATATGCGCAAACCTTAT
Found at i:3542736 original size:15 final size:15
Alignment explanation
Indices: 3542718--3542766 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
3542708 CTATATGCGT
3542718 GAACCTTATATGTGC
1 GAACCTTATATGTGC
* *
3542733 GAA-CTCTGTATGCGC
1 GAACCT-TATATGTGC
*
3542748 AAACCTTATATGTGC
1 GAACCTTATATGTGC
3542763 GAAC
1 GAAC
3542767 TCTAAATGCG
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 2 0.08
15 22 0.85
16 2 0.08
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (15 bp):
GAACCTTATATGTGC
Found at i:3542776 original size:30 final size:30
Alignment explanation
Indices: 3542719--3542776 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
3542709 TATATGCGTG
**
3542719 AACCTTATATGTGCGAACTCTGTATGCGCA
1 AACCTTATATGTGCGAACTCTAAATGCGCA
3542749 AACCTTATATGTGCGAACTCTAAATGCG
1 AACCTTATATGTGCGAACTCTAAATGCG
3542777 AACCCATATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (30 bp):
AACCTTATATGTGCGAACTCTAAATGCGCA
Found at i:3545357 original size:17 final size:17
Alignment explanation
Indices: 3545298--3545361 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
3545288 TATAAATAAA
* *
3545298 AAAATAAATATATAATTT
1 AAAA-AAATATAAAATAT
* *
3545316 AAATAAATCTAAAATAT
1 AAAAAAATATAAAATAT
* *
3545333 GTATAAAATATAAAATAT
1 -AAAAAAATATAAAATAT
3545351 AAAAAAATATA
1 AAAAAAATATA
3545362 TGTGAAAAAT
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
17 19 0.54
18 16 0.46
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
AAAAAAATATAAAATAT
Found at i:3545400 original size:30 final size:30
Alignment explanation
Indices: 3545326--3545402 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 30
3545316 AAATAAATCT
*
3545326 AAAATATGTAT-AAAATATAAAATATAAAA
1 AAAATATGTATAAAAATATAAAAAATAAAA
* *
3545355 AAATATATGT-GAAAAATATAAAAAATCATAA
1 AAA-ATATGTATAAAAATATAAAAAAT-AAAA
3545386 AAAAT-TGTATAAAAATA
1 AAAATATGTATAAAAATA
3545403 CAATAAGTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
29 6 0.15
30 28 0.70
31 6 0.15
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.27
Consensus pattern (30 bp):
AAAATATGTATAAAAATATAAAAAATAAAA
Found at i:3546059 original size:13 final size:13
Alignment explanation
Indices: 3546041--3546081 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
3546031 AAAAAACATG
3546041 AAAGAAGAAAAAA
1 AAAGAAGAAAAAA
*
3546054 AAAGAATGGAAAAA
1 AAAGAA-GAAAAAA
3546068 AAAG--GAAAAAA
1 AAAGAAGAAAAAA
3546079 AAA
1 AAA
3546082 CAAGTGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 9 0.36
13 6 0.24
14 10 0.40
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.02
Consensus pattern (13 bp):
AAAGAAGAAAAAA
Found at i:3572165 original size:36 final size:34
Alignment explanation
Indices: 3572124--3572191 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 34
3572114 TTTTTTATAA
*
3572124 TAAACTAAATTTTGTTAATAAAAATATTAAAATTTT
1 TAAACTAAATTTT-TTAATAAAAAT-TAAAAATTTT
***
3572160 TAAACTTGCTTTTTTAATAAAAATTAAAAATT
1 TAAACTAAATTTTTTAATAAAAATTAAAAATT
3572192 AAAAAAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 7 0.25
35 11 0.39
36 10 0.36
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (34 bp):
TAAACTAAATTTTTTAATAAAAATTAAAAATTTT
Found at i:3572645 original size:23 final size:21
Alignment explanation
Indices: 3572615--3572682 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 21
3572605 TTCACAAACA
*
3572615 AATTCCTTTAAAAAATTCTCTC
1 AATTCC-TTCAAAAATTCTCTC
*
3572637 AATTCCCTTCAAAATTTCTCTC
1 AATT-CCTTCAAAAATTCTCTC
*
3572659 AATTTCCTTCCAAAATTCTCTC
1 AA-TTCCTTCAAAAATTCTCTC
3572681 AA
1 AA
3572683 ACTCTCAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
22 36 0.90
23 4 0.10
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (21 bp):
AATTCCTTCAAAAATTCTCTC
Found at i:3572688 original size:30 final size:30
Alignment explanation
Indices: 3572654--3572712 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
3572644 TTCAAAATTT
* *
3572654 CTCTCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAAA
3572684 CTCTCAAATTCCTTCCAAAATCCTCTCAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAA
3572713 TTTCCTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.36, G:0.00, T:0.34
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAAA
Found at i:3572698 original size:52 final size:51
Alignment explanation
Indices: 3572632--3572734 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 51
3572622 TTAAAAAATT
* * *
3572632 CTCTCAATTCCCTT-CAAAATTTCTCTCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAATTCCCTTCCAAAA-TCCTCTCAATTTCCTTCAAAAAATCTC-CAAA
3572684 CTCTCAAATT-CCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTC-AATTCCCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
3572735 TCCATATTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
51 4 0.09
52 33 0.72
53 9 0.20
ACGTcount: A:0.32, C:0.33, G:0.00, T:0.35
Consensus pattern (51 bp):
CTCTCAATTCCCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
Found at i:3572723 original size:21 final size:22
Alignment explanation
Indices: 3572684--3572725 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
3572674 TTCTCTCAAA
3572684 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
3572706 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
3572726 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:3572801 original size:29 final size:30
Alignment explanation
Indices: 3572767--3572823 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
3572757 ATTAAATTTC
3572767 ATTTTTTA-AGAA-AATTTTAAAATTTTTTT
1 ATTTTTTATA-AATAATTTTAAAATTTTTTT
3572796 ATTTTTTATAAATAATTTTAAAATTTTT
1 ATTTTTTATAAATAATTTTAAAATTTTT
3572824 AATATTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
ATTTTTTATAAATAATTTTAAAATTTTTTT
Found at i:3572977 original size:24 final size:23
Alignment explanation
Indices: 3572922--3572977 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
3572912 ATATTTTAAA
*
3572922 ATTTTTTTAAGATATTTTTATTT
1 ATTTTTTTAAGATATTTTTATAT
3572945 ATGTATTTTT-AGATATTTATTAATAT
1 AT-T-TTTTTAAGATATTT-TT-ATAT
3572971 ATTTTTT
1 ATTTTTT
3572978 GTTATAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 2 0.07
24 13 0.46
25 8 0.29
26 5 0.18
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (23 bp):
ATTTTTTTAAGATATTTTTATAT
Found at i:3575131 original size:23 final size:24
Alignment explanation
Indices: 3575095--3575169 Score: 91
Period size: 23 Copynumber: 3.2 Consensus size: 24
3575085 ACATTATTTG
* *
3575095 ATTAAAATCTCTAACCCT-ACTTA
1 ATTAAAAACCCTAACCCTAACTTA
*
3575118 ATTAAAAACCCTAA-CCTAATTTA
1 ATTAAAAACCCTAACCCTAACTTA
* *
3575141 ATTAAAAACCCAAACCCTAACCTA
1 ATTAAAAACCCTAACCCTAACTTA
3575165 ATTAA
1 ATTAA
3575170 TTAAATTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 3 0.07
23 29 0.66
24 12 0.27
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (24 bp):
ATTAAAAACCCTAACCCTAACTTA
Found at i:3575155 original size:29 final size:29
Alignment explanation
Indices: 3575123--3575408 Score: 251
Period size: 32 Copynumber: 9.8 Consensus size: 29
3575113 ACTTAATTAA
3575123 AAACCCTAACCTAATTTAATTAAAAACCC
1 AAACCCTAACCTAATTTAATTAAAAACCC
3575152 AAACCCTAACCTAATTAATTAAATTAAAAACCC
1 AAACCCTAACCTAA-T--TT-AATTAAAAACCC
* *
3575185 TAA-CCTAACTTAATTTAAATAATTAAAAACCC
1 AAACCCTAACCTAA-TT---TAATTAAAAACCC
* *
3575217 TAACCCTAACCTAACTTAATT---AA---
1 AAACCCTAACCTAATTTAATTAAAAACCC
3575240 AAACCCTAACCTAATTTAATTAAAAACCC
1 AAACCCTAACCTAATTTAATTAAAAACCC
3575269 AAACCCTAACCTAATTAATTAAATTAAAAACCC
1 AAACCCTAACCTAA-T--TT-AATTAAAAACCC
* *
3575302 TAA-CCTAACTTAATTTAAATAATTAAAAACCC
1 AAACCCTAACCTAA-TT---TAATTAAAAACCC
* *
3575334 TAACCCTAACCTAACTTAATT---AA---
1 AAACCCTAACCTAATTTAATTAAAAACCC
3575357 AAACCCTAACCTAATTTAATTAAAAACCC
1 AAACCCTAACCTAATTTAATTAAAAACCC
3575386 AAACCCTAACCTAA-TTAATTAAA
1 AAACCCTAACCTAATTTAATTAAA
3575409 TTGGAAACTC
Statistics
Matches: 217, Mismatches: 12, Indels: 57
0.76 0.04 0.20
Matches are distributed among these distances:
23 38 0.18
26 8 0.04
28 9 0.04
29 52 0.24
30 4 0.02
32 58 0.27
33 48 0.22
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (29 bp):
AAACCCTAACCTAATTTAATTAAAAACCC
Found at i:3575187 original size:56 final size:56
Alignment explanation
Indices: 3575117--3575410 Score: 376
Period size: 56 Copynumber: 5.1 Consensus size: 56
3575107 AACCCTACTT
3575117 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTA
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTA
* *** *
3575173 AATTAAAAACCCTAACCTAACTTAATTTAAATAATTAAAAACCCTAACCCTAACCTAACTT-
1 AATTAAAAACCCTAACCTAATTTAA-TTAAA-AA-CCCAAACCCTAA-CCTAA-TTAA-TTA
3575234 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTA
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTA
* *** *
3575290 AATTAAAAACCCTAACCTAACTTAATTTAAATAATTAAAAACCCTAACCCTAACCTAACTT-
1 AATTAAAAACCCTAACCTAATTTAA-TTAAA-AA-CCCAAACCCTAA-CCTAA-TTAA-TTA
3575351 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTA
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTA
3575407 AATT
1 AATT
3575411 GGAAACTCTA
Statistics
Matches: 204, Mismatches: 20, Indels: 28
0.81 0.08 0.11
Matches are distributed among these distances:
55 4 0.02
56 58 0.28
57 20 0.10
58 22 0.11
59 22 0.11
60 20 0.10
61 54 0.26
62 4 0.02
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (56 bp):
AATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAATTA
Found at i:3575239 original size:61 final size:62
Alignment explanation
Indices: 3575139--3575377 Score: 323
Period size: 61 Copynumber: 3.9 Consensus size: 62
3575129 TAACCTAATT
* *
3575139 TAATTAAAAACCCAAACCCTAACCTAATTAATTAAATTAAAAACCCTAACCTAACTTAATTTAAA
1 TAATTAAAAACCCTAACCCTAACCT-A--ACTTAAATTAAAAACCCTAACCTAACTTAATTTAAA
*
3575204 TAATTAAAAACCCTAACCCTAACCTAACTT-AATTAAAAACCCTAACCTAATTTAA-TTAAA
1 TAATTAAAAACCCTAACCCTAACCTAACTTAAATTAAAAACCCTAACCTAACTTAATTTAAA
*** *
3575264 -AA-CCCAAACCCTAA-CCTAA-TTAA-TTAAATTAAAAACCCTAACCTAACTTAATTTAAA
1 TAATTAAAAACCCTAACCCTAACCTAACTTAAATTAAAAACCCTAACCTAACTTAATTTAAA
*
3575321 TAATTAAAAACCCTAACCCTAACCTAACTT-AATTAAAAACCCTAACCTAATTTAATT
1 TAATTAAAAACCCTAACCCTAACCTAACTTAAATTAAAAACCCTAACCTAACTTAATT
3575378 AAAAACCCAA
Statistics
Matches: 154, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
55 2 0.01
56 27 0.18
57 10 0.06
58 11 0.07
59 11 0.07
60 10 0.06
61 53 0.34
62 5 0.03
64 1 0.01
65 24 0.16
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (62 bp):
TAATTAAAAACCCTAACCCTAACCTAACTTAAATTAAAAACCCTAACCTAACTTAATTTAAA
Found at i:3575244 original size:23 final size:23
Alignment explanation
Indices: 3575218--3575286 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
3575208 TAAAAACCCT
3575218 AACCCTAACCTAACTTAATTAAA
1 AACCCTAACCTAACTTAATTAAA
*
3575241 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAACTTAATTAAA
* *
3575264 AACCCAAACCCTAACCTAATTAA
1 AACCCTAA-CCTAACTTAATTAA
3575287 TTAAATTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 29 0.71
24 12 0.29
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.25
Consensus pattern (23 bp):
AACCCTAACCTAACTTAATTAAA
Found at i:3575361 original size:23 final size:23
Alignment explanation
Indices: 3575335--3575403 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
3575325 TAAAAACCCT
3575335 AACCCTAACCTAACTTAATTAAA
1 AACCCTAACCTAACTTAATTAAA
*
3575358 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAACTTAATTAAA
* *
3575381 AACCCAAACCCTAACCTAATTAA
1 AACCCTAA-CCTAACTTAATTAA
3575404 TTAAATTGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 29 0.71
24 12 0.29
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.25
Consensus pattern (23 bp):
AACCCTAACCTAACTTAATTAAA
Found at i:3575422 original size:117 final size:117
Alignment explanation
Indices: 3575105--3575410 Score: 596
Period size: 117 Copynumber: 2.6 Consensus size: 117
3575095 ATTAAAATCT
3575105 CTAACCCT-ACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTA
1 CTAA-CCTAACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTA
3575169 ATTAAATTAAAAACCCTAACCTAACTTAATTTAAATAATTAAAAACCCTAACC
65 ATTAAATTAAAAACCCTAACCTAACTTAATTTAAATAATTAAAAACCCTAACC
3575222 CTAACCTAACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAA
1 CTAACCTAACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAA
3575287 TTAAATTAAAAACCCTAACCTAACTTAATTTAAATAATTAAAAACCCTAACC
66 TTAAATTAAAAACCCTAACCTAACTTAATTTAAATAATTAAAAACCCTAACC
3575339 CTAACCTAACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAA
1 CTAACCTAACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAA
3575404 TTAAATT
66 TTAAATT
3575411 GGAAACTCTA
Statistics
Matches: 188, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
116 3 0.02
117 185 0.98
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (117 bp):
CTAACCTAACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCAAACCCTAACCTAATTAA
TTAAATTAAAAACCCTAACCTAACTTAATTTAAATAATTAAAAACCCTAACC
Found at i:3576632 original size:125 final size:125
Alignment explanation
Indices: 3576410--3576652 Score: 364
Period size: 125 Copynumber: 1.9 Consensus size: 125
3576400 CCACGAGGGC
* * *
3576410 GCGATTTGACACTGTTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAATTGTAGC
1 GCGATTTGACACTATTTCCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
* * *
3576475 GAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTATCA
* *
3576535 GCGATTTTATACTATTTCCTCAGAAAACGTCAAAAAAAAATTATTT-CTCACATGACC-ACTGTA
1 GCGATTTGACACTATTTCCTCAG-AAACGTCAAAAAAAAATTATTTCCT-ACATGACCAACTGTA
* *
3576598 GCGAAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCT
64 GCGAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCT
3576653 AGTAGAAGCA
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
125 76 0.72
126 30 0.28
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (125 bp):
GCGATTTGACACTATTTCCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGC
GAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTATCA
Found at i:3576699 original size:125 final size:125
Alignment explanation
Indices: 3576413--3576691 Score: 357
Period size: 125 Copynumber: 2.2 Consensus size: 125
3576403 CGAGGGCGCG
* * * *
3576413 ATTTGACACTGTTTGCTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAATTGTAGCGAA
1 ATTTCACACTATTTACTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGCGAA
* * * * ** *
3576478 ATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCAGCG
66 ATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCA
* * *
3576538 ATTTTATACTATTTCCTCAGAAAACGTCAAAAAAAAATTATTT-CTCACATGACC-ACTGTAGCG
1 ATTTCACACTATTTACTCAG-AAACGTCAAAAAAAAATTATTTCCT-ACATGACCAACTGTAGCG
* *
3576601 AAATCGCGTCCACGAGGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTAGTAGAAGCA
64 AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCA
*
3576663 ATTTCCCACTATTTAAC-CAGAAACGTCAA
1 ATTTCACACTATTT-ACTCAGAAACGTCAA
3576692 CTCAAAAAAA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
124 9 0.07
125 93 0.70
126 31 0.23
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (125 bp):
ATTTCACACTATTTACTCAGAAACGTCAAAAAAAAATTATTTCCTACATGACCAACTGTAGCGAA
ATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAAGCA
Found at i:3585621 original size:19 final size:20
Alignment explanation
Indices: 3585599--3585644 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
3585589 TTGGGTTCAA
3585599 GGTTCGAGCTCA-AGTTAAG
1 GGTTCGAGCTCAGAGTTAAG
* * *
3585618 GGTTC-AGGTTAGAGTTTAG
1 GGTTCGAGCTCAGAGTTAAG
3585637 GGTTCGAG
1 GGTTCGAG
3585645 ATTCGAGAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 4 0.18
19 16 0.73
20 2 0.09
ACGTcount: A:0.22, C:0.11, G:0.37, T:0.30
Consensus pattern (20 bp):
GGTTCGAGCTCAGAGTTAAG
Found at i:3592159 original size:21 final size:21
Alignment explanation
Indices: 3592135--3592195 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
3592125 GGTAAAACTG
3592135 AATTCGTGTTTGTGAGCATGA
1 AATTCGTGTTTGTGAGCATGA
** *
3592156 AATT--TG-TT-AAAAC-TG-
1 AATTCGTGTTTGTGAGCATGA
3592171 AATTCGTGTTTGTGAGCATGA
1 AATTCGTGTTTGTGAGCATGA
3592192 AATT
1 AATT
3592196 TATATGCAAG
Statistics
Matches: 28, Mismatches: 6, Indels: 12
0.61 0.13 0.26
Matches are distributed among these distances:
15 4 0.14
16 2 0.07
17 4 0.14
18 4 0.14
19 4 0.14
20 2 0.07
21 8 0.29
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.39
Consensus pattern (21 bp):
AATTCGTGTTTGTGAGCATGA
Found at i:3592174 original size:36 final size:36
Alignment explanation
Indices: 3592127--3592196 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
3592117 ATGATAATGG
3592127 TAAAACTGAATTCGTGTTTGTGAGCATGAAATTTGT
1 TAAAACTGAATTCGTGTTTGTGAGCATGAAATTTGT
3592163 TAAAACTGAATTCGTGTTTGTGAGCATGAAATTT
1 TAAAACTGAATTCGTGTTTGTGAGCATGAAATTT
3592197 ATATGCAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (36 bp):
TAAAACTGAATTCGTGTTTGTGAGCATGAAATTTGT
Found at i:3595595 original size:173 final size:174
Alignment explanation
Indices: 3595191--3595713 Score: 976
Period size: 173 Copynumber: 3.0 Consensus size: 174
3595181 GAAGTCGGTA
* *** *
3595191 AACACCGAAGAAGTCTCCTTTTTGGGTCCAAAAGCAGGAGTCAATTTTGCAATATCCTCCTTATT
1 AACACTGAAGAAGTCTCCTTTTTGGGTCCATGCGCAGGAGTCAATTTTGCAATATCCTCCCTATT
3595256 TGATTCCGTGGAAAAAGAAATGCTTTGATTATTTTGTTCATATGTAGTGATGATATGGAATACAG
66 TGATTCCGTGGAAAAAGAAATGCTTTGATTATTTTGTTCATATGTAGTGATGATATGGAATACAG
3595321 CAGTAAAGAAAAGAAAATAGAGAAAAGTTAAAAGAAAGCAAATC
131 CAGTAAAGAAAAGAAAATAGAGAAAAGTTAAAAGAAAGCAAATC
3595365 AACACTGAAGAAGTCTCCTTTTTGGGTCCATGCGCAGGAGTCAATTTTGCAATATCCTCCCTATT
1 AACACTGAAGAAGTCTCCTTTTTGGGTCCATGCGCAGGAGTCAATTTTGCAATATCCTCCCTATT
3595430 TGATTCCGTGGAAAAAGAAATGCTTTGATTATTTTGTTCATATGTAGTGATGATATGGAATACAG
66 TGATTCCGTGGAAAAAGAAATGCTTTGATTATTTTGTTCATATGTAGTGATGATATGGAATACAG
3595495 CA-TAAAGAAAAGAAAATAGAGAAAAGTTAAAAGAAAGCAAATC
131 CAGTAAAGAAAAGAAAATAGAGAAAAGTTAAAAGAAAGCAAATC
*
3595538 AACACTGAAGAAGTCTCCTTTTTGGGTCCATGCGCTGGAGTCAATTTTGCAATATCCTCCCTATT
1 AACACTGAAGAAGTCTCCTTTTTGGGTCCATGCGCAGGAGTCAATTTTGCAATATCCTCCCTATT
3595603 TGATTCCGTGGAAAAAGAAATGCTTTGATTATTTTGTTCATATGTAGTGATGATATGGAATACAG
66 TGATTCCGTGGAAAAAGAAATGCTTTGATTATTTTGTTCATATGTAGTGATGATATGGAATACAG
*
3595668 CAGTAAAGAAAAGAAAATAGAGAAAAGCTAAAAGAAAGCAAATC
131 CAGTAAAGAAAAGAAAATAGAGAAAAGTTAAAAGAAAGCAAATC
3595712 AA
1 AA
3595714 TACGTATTAT
Statistics
Matches: 341, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
173 172 0.50
174 169 0.50
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (174 bp):
AACACTGAAGAAGTCTCCTTTTTGGGTCCATGCGCAGGAGTCAATTTTGCAATATCCTCCCTATT
TGATTCCGTGGAAAAAGAAATGCTTTGATTATTTTGTTCATATGTAGTGATGATATGGAATACAG
CAGTAAAGAAAAGAAAATAGAGAAAAGTTAAAAGAAAGCAAATC
Found at i:3603283 original size:14 final size:15
Alignment explanation
Indices: 3603263--3603305 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
3603253 AATCGAAACT
3603263 GTACAAAATAAATTA
1 GTACAAAATAAATTA
3603278 -TACAAAAATATAATTA
1 GTAC-AAAATA-AATTA
*
3603294 GTACAAGATAAA
1 GTACAAAATAAA
3603306 CCATAGTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
14 3 0.12
15 8 0.33
16 10 0.42
17 3 0.12
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (15 bp):
GTACAAAATAAATTA
Found at i:3603287 original size:15 final size:17
Alignment explanation
Indices: 3603263--3603299 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
3603253 AATCGAAACT
3603263 GTAC-AAAATA-AATTA
1 GTACAAAAATATAATTA
3603278 -TACAAAAATATAATTA
1 GTACAAAAATATAATTA
3603294 GTACAA
1 GTACAA
3603300 GATAAACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 3 0.16
15 6 0.32
16 5 0.26
17 5 0.26
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.27
Consensus pattern (17 bp):
GTACAAAAATATAATTA
Found at i:3604843 original size:6 final size:6
Alignment explanation
Indices: 3604832--3604859 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
3604822 TATATTAAAA
3604832 TTTATT TTTATT TTTATT TTTATT TTTA
1 TTTATT TTTATT TTTATT TTTATT TTTA
3604860 ATCAAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:3604893 original size:42 final size:40
Alignment explanation
Indices: 3604848--3604953 Score: 106
Period size: 42 Copynumber: 2.5 Consensus size: 40
3604838 TTTATTTTTA
*
3604848 TTTTTATTTTTAATCAAATATACTTTTTATTAAATATATATAT
1 TTTTTATTTTTAATCAAATATA---TATATTAAATATATATAT
* * * *
3604891 TTTTTGGACTTTTAATCCGAAT-TATATATTAAATATTTTTAT
1 TTTTT--ATTTTTAAT-CAAATATATATATTAAATATATATAT
3604933 TTTTTATTTTTAATCAAATAT
1 TTTTTATTTTTAATCAAATAT
3604954 GGGCCGGGTT
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
39 4 0.08
40 9 0.17
42 20 0.38
43 5 0.10
45 10 0.19
46 4 0.08
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.58
Consensus pattern (40 bp):
TTTTTATTTTTAATCAAATATATATATTAAATATATATAT
Found at i:3605398 original size:16 final size:16
Alignment explanation
Indices: 3605365--3605398 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3605355 ATATATTGTT
* *
3605365 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
3605381 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
3605397 AA
1 AA
3605399 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:3608225 original size:21 final size:21
Alignment explanation
Indices: 3608199--3608239 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
3608189 AGACGAGCAA
*
3608199 TACTCCACAACAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
3608220 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
3608240 TTGAGCAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:3610178 original size:16 final size:16
Alignment explanation
Indices: 3610145--3610178 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3610135 GGAGATTGTT
* *
3610145 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
3610161 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
3610177 AA
1 AA
3610179 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:3611329 original size:24 final size:21
Alignment explanation
Indices: 3611281--3611329 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
3611271 GGGGATATGT
* *
3611281 AATTATTATATTTTTTTGGTT
1 AATTATTATATTTTTGTGGTA
3611302 AATTATTATATTTTGTGTGTGTGA
1 AATTATTATATTTT-TGTG-GT-A
3611326 AATT
1 AATT
3611330 GTGATTCATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 14 0.61
22 3 0.13
23 2 0.09
24 4 0.17
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (21 bp):
AATTATTATATTTTTGTGGTA
Found at i:3613300 original size:13 final size:13
Alignment explanation
Indices: 3613282--3613310 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
3613272 AAAATAAAAA
3613282 ATATATTTATTAT
1 ATATATTTATTAT
3613295 ATATATTTATTAT
1 ATATATTTATTAT
3613308 ATA
1 ATA
3613311 AATACTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATATATTTATTAT
Found at i:3614330 original size:24 final size:22
Alignment explanation
Indices: 3614293--3614344 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 22
3614283 TATAATAGTG
*
3614293 AAATAATAGTAAAAAAGTGAGAAA
1 AAATAATAGCAAAAAAGT-A-AAA
* *
3614317 AAATAGTAGCAAAACAGTAAAA
1 AAATAATAGCAAAAAAGTAAAA
3614339 AAATAA
1 AAATAA
3614345 CTTTTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 8 0.33
23 1 0.04
24 15 0.62
ACGTcount: A:0.67, C:0.04, G:0.13, T:0.15
Consensus pattern (22 bp):
AAATAATAGCAAAAAAGTAAAA
Found at i:3615630 original size:31 final size:31
Alignment explanation
Indices: 3615592--3615668 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
3615582 AAAAACACTT
*
3615592 AATAGTTTAGTGACTTAAAT-AAAAATATTTG
1 AATAGTTTAGTGACTTAAATGAAAAAT-TTTA
* * *
3615623 AATAGTTTACTAACTTAAATGAAAACTTTTA
1 AATAGTTTAGTGACTTAAATGAAAAATTTTA
3615654 AATAGTTTAGTGACT
1 AATAGTTTAGTGACT
3615669 ATTTTATAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 34 0.87
32 5 0.13
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (31 bp):
AATAGTTTAGTGACTTAAATGAAAAATTTTA
Found at i:3616874 original size:25 final size:25
Alignment explanation
Indices: 3616840--3616891 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
3616830 TTTAATTGGG
3616840 TTGATATGTGTTTTAAAAGCCCTTT
1 TTGATATGTGTTTTAAAAGCCCTTT
3616865 TTGATATGTGTTTTAAAAGCCCTTT
1 TTGATATGTGTTTTAAAAGCCCTTT
3616890 TT
1 TT
3616892 AAAGACTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.50
Consensus pattern (25 bp):
TTGATATGTGTTTTAAAAGCCCTTT
Found at i:3618201 original size:21 final size:20
Alignment explanation
Indices: 3618157--3618202 Score: 51
Period size: 19 Copynumber: 2.3 Consensus size: 20
3618147 TAAAATATTT
*
3618157 TTATATAAATTTAATTATAA
1 TTATATAAATTTAATTAAAA
3618177 -TATATATAA-TTAATATAAAA
1 TTATATA-AATTTAAT-TAAAA
3618197 TTATAT
1 TTATAT
3618203 TTATGCCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 11 0.50
20 6 0.27
21 5 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTATATAAATTTAATTAAAA
Found at i:3620424 original size:4 final size:4
Alignment explanation
Indices: 3620415--3620441 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
3620405 CCTCCCCCCA
3620415 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
3620442 TCTTAGTCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:3628543 original size:31 final size:31
Alignment explanation
Indices: 3628508--3628567 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
3628498 CTAAATGATT
3628508 ATTGAACTATTCT-AAACTTTTTATTTAAATC
1 ATTGAACTATT-TGAAACTTTTTATTTAAATC
*
3628539 ATTGAACTATTTGAAAGTTTTTATTTAAA
1 ATTGAACTATTTGAAACTTTTTATTTAAA
3628568 GTATTGAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (31 bp):
ATTGAACTATTTGAAACTTTTTATTTAAATC
Found at i:3628574 original size:31 final size:30
Alignment explanation
Indices: 3628507--3628574 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 30
3628497 ACTAAATGAT
3628507 TATTGAACTATTCTAAACTTTTTATTTAAA
1 TATTGAACTATTCTAAACTTTTTATTTAAA
*
3628537 TCATTGAACTATT-TGAAAGTTTTTATTTAAA
1 T-ATTGAACTATTCT-AAACTTTTTATTTAAA
3628568 GTATTGA
1 -TATTGA
3628575 GTTGTTAAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
30 2 0.06
31 31 0.91
32 1 0.03
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.49
Consensus pattern (30 bp):
TATTGAACTATTCTAAACTTTTTATTTAAA
Found at i:3628855 original size:31 final size:31
Alignment explanation
Indices: 3628820--3628889 Score: 77
Period size: 31 Copynumber: 2.3 Consensus size: 31
3628810 AAAGATGTGA
* * * *
3628820 TTTTAATAGCTCAGTAACTTAAATGAAAATT
1 TTTTAATAGCCCAATAACTTAAATAAAAAAT
* *
3628851 TTTTAACAGCCCAATAATTTAAATAAAAAAT
1 TTTTAATAGCCCAATAACTTAAATAAAAAAT
*
3628882 TTTGAATA
1 TTTTAATA
3628890 TTTAATAACT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (31 bp):
TTTTAATAGCCCAATAACTTAAATAAAAAAT
Found at i:3630707 original size:17 final size:16
Alignment explanation
Indices: 3630680--3630714 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
3630670 TTGGGTTATC
*
3630680 ATATAAATAATCTATA
1 ATATAAATAATATATA
3630696 ATATATAATAATATATA
1 ATATA-AATAATATATA
3630713 AT
1 AT
3630715 CTTTCATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATAAATAATATATA
Found at i:3634732 original size:68 final size:68
Alignment explanation
Indices: 3634659--3634790 Score: 228
Period size: 68 Copynumber: 1.9 Consensus size: 68
3634649 GTTACAAAAT
*
3634659 AATAATAATAAAACATCAAATTTGTTTTACTAATCAAATGTTAAATTTTGTTACAACAATTAATA
1 AATAATAATAAAACATCAAATTTATTTTACTAATCAAATGTTAAATTTTGTTACAACAATTAATA
3634724 CAA
66 CAA
* * *
3634727 AATAATAATAAAACATCAAGTTTATTTTACTAATCAAATGTTAGATTTTGTTTCAACAATTAAT
1 AATAATAATAAAACATCAAATTTATTTTACTAATCAAATGTTAAATTTTGTTACAACAATTAAT
3634791 TCAATTAATT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 60 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (68 bp):
AATAATAATAAAACATCAAATTTATTTTACTAATCAAATGTTAAATTTTGTTACAACAATTAATA
CAA
Found at i:3634797 original size:9 final size:9
Alignment explanation
Indices: 3634782--3634834 Score: 65
Period size: 9 Copynumber: 6.1 Consensus size: 9
3634772 TTTTGTTTCA
3634782 ACAATTAAT
1 ACAATTAAT
*
3634791 TCAATTAAT
1 ACAATTAAT
*
3634800 TCAATT-A-
1 ACAATTAAT
3634807 ACAATTAAT
1 ACAATTAAT
*
3634816 ACAATCAAT
1 ACAATTAAT
3634825 ACAATTAAT
1 ACAATTAAT
3634834 A
1 A
3634835 ATTTGATAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 5 0.13
8 2 0.05
9 31 0.82
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (9 bp):
ACAATTAAT
Found at i:3634815 original size:25 final size:25
Alignment explanation
Indices: 3634781--3634837 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
3634771 ATTTTGTTTC
* * *
3634781 AACAATTAATTCAATTAATTCAATT
1 AACAATTAATACAATCAATACAATT
3634806 AACAATTAATACAATCAATACAATT
1 AACAATTAATACAATCAATACAATT
*
3634831 AATAATT
1 AACAATT
3634838 TGATAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (25 bp):
AACAATTAATACAATCAATACAATT
Found at i:3634928 original size:16 final size:16
Alignment explanation
Indices: 3634907--3634948 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
3634897 AATAATTTGA
*
3634907 TAATTTTATTAACAAT
1 TAATTTTAATAACAAT
3634923 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
3634939 TAGTTTTAAT
1 TAATTTTAAT
3634949 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:3634932 original size:22 final size:23
Alignment explanation
Indices: 3634922--3634977 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
3634912 TTATTAACAA
* * *
3634922 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
3634944 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
3634967 TTAATTTTAAT
1 TTAATTTTAAT
3634978 TTTAATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:3636812 original size:29 final size:29
Alignment explanation
Indices: 3636720--3636823 Score: 90
Period size: 29 Copynumber: 3.7 Consensus size: 29
3636710 AAACCCGCAT
3636720 CAACTTAGTTGAGTAAACAATGTTAATAG
1 CAACTTAGTTGAGTAAACAATGTTAATAG
* * * * **
3636749 CAAC-TATTTTG-CTAAA-TATATT-ATTC
1 CAACTTA-GTTGAGTAAACAATGTTAATAG
**
3636775 CTTTCTTAGTTGAGTAAACAATGTTAATAG
1 C-AACTTAGTTGAGTAAACAATGTTAATAG
3636805 CAACTTAGTTGAGTAAACA
1 CAACTTAGTTGAGTAAACA
3636824 GTAGTAATCA
Statistics
Matches: 53, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
26 3 0.06
27 8 0.15
28 12 0.23
29 27 0.51
30 3 0.06
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (29 bp):
CAACTTAGTTGAGTAAACAATGTTAATAG
Found at i:3644778 original size:31 final size:31
Alignment explanation
Indices: 3644711--3644779 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
3644701 GTTAACAGTC
*
3644711 TAATGACTTAAATAAAAACTTTTGAATAATA
1 TAATGACTCAAATAAAAACTTTTGAATAATA
* * * * *
3644742 CAATGACTCAAATGAACATTTTTGAATAATT
1 TAATGACTCAAATAAAAACTTTTGAATAATA
3644773 TAATGAC
1 TAATGAC
3644780 CATTTGTGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.35
Consensus pattern (31 bp):
TAATGACTCAAATAAAAACTTTTGAATAATA
Found at i:3659042 original size:59 final size:59
Alignment explanation
Indices: 3658950--3659127 Score: 356
Period size: 59 Copynumber: 3.0 Consensus size: 59
3658940 TGAAAGAATG
3658950 AACCGAACATTGATTGAGAGAGTCAGATGTTTGTTGTCAGATGCAAAGTTACCAAGATC
1 AACCGAACATTGATTGAGAGAGTCAGATGTTTGTTGTCAGATGCAAAGTTACCAAGATC
3659009 AACCGAACATTGATTGAGAGAGTCAGATGTTTGTTGTCAGATGCAAAGTTACCAAGATC
1 AACCGAACATTGATTGAGAGAGTCAGATGTTTGTTGTCAGATGCAAAGTTACCAAGATC
3659068 AACCGAACATTGATTGAGAGAGTCAGATGTTTGTTGTCAGATGCAAAGTTACCAAGATC
1 AACCGAACATTGATTGAGAGAGTCAGATGTTTGTTGTCAGATGCAAAGTTACCAAGATC
3659127 A
1 A
3659128 TTTTGGGCTG
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 119 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (59 bp):
AACCGAACATTGATTGAGAGAGTCAGATGTTTGTTGTCAGATGCAAAGTTACCAAGATC
Found at i:3663855 original size:19 final size:20
Alignment explanation
Indices: 3663826--3663876 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
3663816 AAATATAAAA
* *
3663826 TTTGAAATTTTTATAAGTAT
1 TTTGAATTTTTTACAAGTAT
* *
3663846 TTTG-ATTTTTAACAATTAT
1 TTTGAATTTTTTACAAGTAT
3663865 TTTGAATTTTTT
1 TTTGAATTTTTT
3663877 TTTGGATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.61
Consensus pattern (20 bp):
TTTGAATTTTTTACAAGTAT
Found at i:3663898 original size:13 final size:12
Alignment explanation
Indices: 3663864--3663900 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
3663854 TTAACAATTA
3663864 TTTTGAATTTTT
1 TTTTGAATTTTT
*
3663876 TTTTGGATTTTT
1 TTTTGAATTTTT
3663888 TTTTGCAATTTTT
1 TTTTG-AATTTTT
3663901 ATTAAGAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.14, C:0.03, G:0.11, T:0.73
Consensus pattern (12 bp):
TTTTGAATTTTT
Found at i:3664524 original size:20 final size:20
Alignment explanation
Indices: 3664499--3664546 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
3664489 CTATCCTTTC
* *
3664499 TCCTCCTCAATCTTCTCCTA
1 TCCTCCTCAATCATCACCTA
**
3664519 TCCTCCAAAATCATCACCTA
1 TCCTCCTCAATCATCACCTA
3664539 TCCTCCTC
1 TCCTCCTC
3664547 CCATACCTTC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.46, G:0.00, T:0.33
Consensus pattern (20 bp):
TCCTCCTCAATCATCACCTA
Found at i:3669237 original size:112 final size:111
Alignment explanation
Indices: 3669094--3669315 Score: 381
Period size: 112 Copynumber: 2.0 Consensus size: 111
3669084 AAGAGAATGA
* *
3669094 AAAAAAAATTCAATAACTCAAAACAAAAAAACATGGGGCCTAATTGTGTAATTTAACCTAAAATT
1 AAAAAAAATTAAATAACTCAAAACAAAAAAACATGGGGACTAATTGTGTAATTTAACCTAAAATT
* *
3669159 AGAGGTGAGCAAAATCTGATTTGATTCAAAAAACTTGATTAAAAAAG
66 AGAGGTGAGCAAAATCTGATTCGATTCAAAAAACTCGA-TAAAAAAG
*
3669206 AAAAAAAATTAAATAGCTCAAAACAAAAAAACATGGGGACTAATTGTGTAATTTAACCTAAAATT
1 AAAAAAAATTAAATAACTCAAAACAAAAAAACATGGGGACTAATTGTGTAATTTAACCTAAAATT
*
3669271 AGAGGTGAGTAAAATCTGATTCGATTCAAAAAACTCGATAAAAAA
66 AGAGGTGAGCAAAATCTGATTCGATTCAAAAAACTCGATAAAAAA
3669316 TTCAAAATTT
Statistics
Matches: 104, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
111 7 0.07
112 97 0.93
ACGTcount: A:0.51, C:0.11, G:0.14, T:0.24
Consensus pattern (111 bp):
AAAAAAAATTAAATAACTCAAAACAAAAAAACATGGGGACTAATTGTGTAATTTAACCTAAAATT
AGAGGTGAGCAAAATCTGATTCGATTCAAAAAACTCGATAAAAAAG
Found at i:3692196 original size:52 final size:52
Alignment explanation
Indices: 3692117--3692385 Score: 388
Period size: 52 Copynumber: 5.2 Consensus size: 52
3692107 TACTTCTGAT
* **
3692117 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
1 CAAGTGA-AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
* * *
3692170 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
3692222 C------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
3692268 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
** *
3692320 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
*
3692372 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
3692386 GCTACACTTA
Statistics
Matches: 197, Mismatches: 12, Indels: 14
0.88 0.05 0.06
Matches are distributed among these distances:
46 44 0.22
52 136 0.69
53 17 0.09
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (52 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
Found at i:3692231 original size:98 final size:98
Alignment explanation
Indices: 3692111--3692385 Score: 415
Period size: 98 Copynumber: 2.7 Consensus size: 98
3692101 TTTGAGTACT
*
3692111 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
3692176 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTACACTTA
**
3692209 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
3692274 AAAAGTGATAAGTGATAGCTTCGGCTACACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTACACTTA
*
3692307 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGA
*
3692372 CAAAGTGATAAGTG
60 C-AAGTGAAAAGTG
3692386 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
98 106 0.66
104 43 0.27
105 11 0.07
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTACACTTA
Found at i:3692393 original size:37 final size:37
Alignment explanation
Indices: 3692349--3692494 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
3692339 GATAGCTTTA
3692349 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
3692386 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
3692423 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
3692460 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
3692495 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:3696360 original size:38 final size:38
Alignment explanation
Indices: 3696306--3696382 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
3696296 CTTCAATAGA
* *
3696306 TAATCAAGCTCGTGATCATGTCTAATTGTAACTGCTTT
1 TAATCAAGCCCATGATCATGTCTAATTGTAACTGCTTT
* *
3696344 TAATCAAGCCCATGATCATGTTTAATTGTAACTGTTTT
1 TAATCAAGCCCATGATCATGTCTAATTGTAACTGCTTT
3696382 T
1 T
3696383 TTTTTTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (38 bp):
TAATCAAGCCCATGATCATGTCTAATTGTAACTGCTTT
Found at i:3712908 original size:43 final size:43
Alignment explanation
Indices: 3712846--3712993 Score: 226
Period size: 43 Copynumber: 3.4 Consensus size: 43
3712836 TGTCCCAGAC
* ** *
3712846 ATGGTCTTACATGAAAATCTCGTATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACACG-AAATCTCAAATCGATGCCAATAGCCTAGCT
*
3712890 ATGGTCTTACACGAAATCTCAAATTGATGCCAATAGCCTAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCTAGCT
3712933 ATGGTCTTACA-GAGAATCTCAAATCGATGCCAATAGCCTAGCT
1 ATGGTCTTACACGA-AATCTCAAATCGATGCCAATAGCCTAGCT
3712976 ATGGTCTTACACGAAATC
1 ATGGTCTTACACGAAATC
3712994 ACACCTCGGA
Statistics
Matches: 96, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
42 2 0.02
43 80 0.83
44 14 0.15
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCTAGCT
Found at i:3713152 original size:31 final size:31
Alignment explanation
Indices: 3713111--3713379 Score: 362
Period size: 31 Copynumber: 8.7 Consensus size: 31
3713101 ATCCAATGCT
* * *
3713111 CAAATC-AATTCGACAATATATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
3713141 CGAATCAAATTCGGCAATGTATATCTACATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* * *
3713172 CAAAT-TAATTTGGCAATGTATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
3713202 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
*
3713233 CAAATCAAATTCGGCAATGTATATCTATAAA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
3713264 CAATTCAAATTCGGCAATGTATATCTATATG
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
3713295 CAAATCAAATTCGACAATGTATATCTATAAA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* * *
3713326 CAATTCAAATTTGCCAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
3713357 CAAATCAAATTCGGCAATGTATA
1 CAAATCAAATTCGGCAATGTATA
3713380 AAACATATAT
Statistics
Matches: 207, Mismatches: 30, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
30 31 0.15
31 176 0.85
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.31
Consensus pattern (31 bp):
CAAATCAAATTCGGCAATGTATATCTATATA
Found at i:3714120 original size:18 final size:19
Alignment explanation
Indices: 3714083--3714120 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
3714073 CATATAATTC
*
3714083 TTAAGTTATTTTATCATTA
1 TTAAGTTATTTTACCATTA
*
3714102 TTAA-TTATTTTACCTTTA
1 TTAAGTTATTTTACCATTA
3714120 T
1 T
3714121 AACCTTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (19 bp):
TTAAGTTATTTTACCATTA
Found at i:3718443 original size:23 final size:23
Alignment explanation
Indices: 3718410--3718456 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
3718400 ACGATATTAT
*
3718410 TTTATTTTTATATATTTTT-AAAA
1 TTTATTATTATAT-TTTTTGAAAA
3718433 TTTATTATTATATTTTTTGAAAA
1 TTTATTATTATATTTTTTGAAAA
3718456 T
1 T
3718457 AATTATGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTATTATTATATTTTTTGAAAA
Found at i:3718469 original size:52 final size:52
Alignment explanation
Indices: 3718318--3718478 Score: 157
Period size: 54 Copynumber: 3.0 Consensus size: 52
3718308 AATTTTTTTA
* * *
3718318 TTAAATAATTTATTATTATA-TTTTTAAAAATATTTATGTGTTATTATATATATA
1 TTAAA-AATTTATTATTATATTTTTTAAAAATAATTATGTATT-TT-TATATATT
* ** *
3718372 TTAAAAATTATATTATTAT-TTATTGTCAACGAT-ATTATTTTATTTTTATATATT
1 TTAAAAATT-TATTATTATATT-TT-TTAAAAATAATTA-TGTATTTTTATATATT
* *
3718426 TTTAAAATTTATTATTATATTTTTTGAAAATAATTATGTATTTTTATATATT
1 TTAAAAATTTATTATTATATTTTTTAAAAATAATTATGTATTTTTATATATT
3718478 T
1 T
3718479 CTTTGAATTT
Statistics
Matches: 87, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
52 20 0.23
53 19 0.22
54 32 0.37
55 7 0.08
56 9 0.10
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (52 bp):
TTAAAAATTTATTATTATATTTTTTAAAAATAATTATGTATTTTTATATATT
Found at i:3721879 original size:97 final size:97
Alignment explanation
Indices: 3721713--3721909 Score: 394
Period size: 97 Copynumber: 2.0 Consensus size: 97
3721703 GCCAGCCAAT
3721713 CAATGAGCCCCAAAAAATAAACATTGACGAAAATTTGGCCTTTTTCTTTTATAGAAGACGAGTCA
1 CAATGAGCCCCAAAAAATAAACATTGACGAAAATTTGGCCTTTTTCTTTTATAGAAGACGAGTCA
3721778 TCCATCCATCATCCTACGTCTCACAGTCCATG
66 TCCATCCATCATCCTACGTCTCACAGTCCATG
3721810 CAATGAGCCCCAAAAAATAAACATTGACGAAAATTTGGCCTTTTTCTTTTATAGAAGACGAGTCA
1 CAATGAGCCCCAAAAAATAAACATTGACGAAAATTTGGCCTTTTTCTTTTATAGAAGACGAGTCA
3721875 TCCATCCATCATCCTACGTCTCACAGTCCATG
66 TCCATCCATCATCCTACGTCTCACAGTCCATG
3721907 CAA
1 CAA
3721910 CATTGTCTGC
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 100 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (97 bp):
CAATGAGCCCCAAAAAATAAACATTGACGAAAATTTGGCCTTTTTCTTTTATAGAAGACGAGTCA
TCCATCCATCATCCTACGTCTCACAGTCCATG
Found at i:3726445 original size:43 final size:44
Alignment explanation
Indices: 3726395--3726482 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
3726385 AAATAGAATC
* *
3726395 TCTCTCTT-AAGTGTTACATTGTACATAGAAAAAAATATACATA
1 TCTCTCTTAAAATGTTACATTGTACAAAGAAAAAAATATACATA
3726438 TCTCTCTTAAAATGTTACATTGTACAAAGAAAAAAATATACATA
1 TCTCTCTTAAAATGTTACATTGTACAAAGAAAAAAATATACATA
3726482 T
1 T
3726483 AATAAATAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
43 8 0.19
44 34 0.81
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.34
Consensus pattern (44 bp):
TCTCTCTTAAAATGTTACATTGTACAAAGAAAAAAATATACATA
Found at i:3732887 original size:9 final size:9
Alignment explanation
Indices: 3732873--3732906 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
3732863 TTACAATAAT
3732873 AAAATTTTA
1 AAAATTTTA
*
3732882 AAAATTATA
1 AAAATTTTA
3732891 AAAATATTTA
1 AAAAT-TTTA
3732901 AAAATT
1 AAAATT
3732907 AAAATTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (9 bp):
AAAATTTTA
Found at i:3732918 original size:25 final size:24
Alignment explanation
Indices: 3732882--3732928 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
3732872 TAAAATTTTA
*
3732882 AAAATTATAAAAATATTTAAAAATT
1 AAAATTATAAAAAT-TATAAAAATT
3732907 AAAATTCA-AAAAATTATAAAAA
1 AAAATT-ATAAAAATTATAAAAA
3732929 GATTATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 12 0.60
26 1 0.05
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (24 bp):
AAAATTATAAAAATTATAAAAATT
Found at i:3734969 original size:19 final size:20
Alignment explanation
Indices: 3734947--3734984 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3734937 TTTAAAAAAA
3734947 TATAAAT-TTTAGAATTTTT
1 TATAAATATTTAGAATTTTT
*
3734966 TATAAATATTTTGAATTTT
1 TATAAATATTTAGAATTTT
3734985 ATTTTTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
TATAAATATTTAGAATTTTT
Found at i:3735438 original size:5 final size:5
Alignment explanation
Indices: 3735428--3735499 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
3735418 TGTTAAAAAA
* *
3735428 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATCATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT AT-ATT
3735474 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
3735500 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 33 0.59
6 10 0.18
7 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:3735481 original size:19 final size:19
Alignment explanation
Indices: 3735457--3735499 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
3735447 ATTATGTTTT
3735457 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
3735476 TATATTATATTATATTATA
1 TATATTATATTATATTATA
3735495 TATAT
1 TATAT
3735500 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:3735531 original size:17 final size:17
Alignment explanation
Indices: 3735509--3735542 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3735499 TACATAAAAC
*
3735509 AAAAGAAAGAATAGAAA
1 AAAAGAAAGAAAAGAAA
3735526 AAAAGAAAGAAAAGAAA
1 AAAAGAAAGAAAAGAAA
3735543 CAGAATAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAGAAAGAAAAGAAA
Found at i:3735538 original size:9 final size:9
Alignment explanation
Indices: 3735509--3735542 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
3735499 TACATAAAAC
3735509 AAAAGAAAG
1 AAAAGAAAG
*
3735518 AATAGAAA-
1 AAAAGAAAG
3735526 AAAAGAAAG
1 AAAAGAAAG
3735535 AAAAGAAA
1 AAAAGAAA
3735543 CAGAATAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:3736531 original size:46 final size:44
Alignment explanation
Indices: 3736472--3736586 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
3736462 ACAGGACAGA
* *
3736472 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
3736518 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
3736562 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
3736587 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:3736567 original size:44 final size:45
Alignment explanation
Indices: 3736472--3736605 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
3736462 ACAGGACAGA
* *
3736472 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
3736518 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
3736562 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
3736606 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:3741645 original size:5 final size:5
Alignment explanation
Indices: 3741635--3741706 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
3741625 TGTTAAAAAA
* *
3741635 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATCATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT AT-ATT
3741681 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
3741707 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 33 0.59
6 10 0.18
7 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:3741688 original size:19 final size:19
Alignment explanation
Indices: 3741664--3741706 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
3741654 ATTATGTTTT
3741664 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
3741683 TATATTATATTATATTATA
1 TATATTATATTATATTATA
3741702 TATAT
1 TATAT
3741707 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:3741738 original size:17 final size:17
Alignment explanation
Indices: 3741716--3741749 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3741706 TACATAAAAC
*
3741716 AAAAGAAAGAATAGAAA
1 AAAAGAAAGAAAAGAAA
3741733 AAAAGAAAGAAAAGAAA
1 AAAAGAAAGAAAAGAAA
3741750 CAGAATAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAGAAAGAAAAGAAA
Found at i:3741745 original size:9 final size:9
Alignment explanation
Indices: 3741716--3741749 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
3741706 TACATAAAAC
3741716 AAAAGAAAG
1 AAAAGAAAG
*
3741725 AATAGAAA-
1 AAAAGAAAG
3741733 AAAAGAAAG
1 AAAAGAAAG
3741742 AAAAGAAA
1 AAAAGAAA
3741750 CAGAATAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:3742738 original size:46 final size:44
Alignment explanation
Indices: 3742679--3742793 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
3742669 ACAGGACAGA
* *
3742679 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
3742725 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
3742769 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
3742794 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:3742774 original size:44 final size:45
Alignment explanation
Indices: 3742679--3742812 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
3742669 ACAGGACAGA
* *
3742679 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
3742725 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
3742769 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
3742813 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:3744377 original size:23 final size:23
Alignment explanation
Indices: 3744347--3744401 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
3744337 ATTTTTAAAT
3744347 CTGAAAAATAGACGATCATATTC
1 CTGAAAAATAGACGATCATATTC
*
3744370 CTGAAAAATAGACGGTCATATTC
1 CTGAAAAATAGACGATCATATTC
*
3744393 TTGAAAAAT
1 CTGAAAAAT
3744402 TAAAATAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.27
Consensus pattern (23 bp):
CTGAAAAATAGACGATCATATTC
Found at i:3748444 original size:24 final size:24
Alignment explanation
Indices: 3748417--3748466 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
3748407 TCATCAACAG
* * *
3748417 ATTTTACTATCATCGAAACCATCC
1 ATTTTACTATCACCAAAACCAACC
3748441 ATTTTACTATCACCAAAACCAACC
1 ATTTTACTATCACCAAAACCAACC
3748465 AT
1 AT
3748467 CCTTCCCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.30, G:0.02, T:0.30
Consensus pattern (24 bp):
ATTTTACTATCACCAAAACCAACC
Found at i:3748464 original size:28 final size:28
Alignment explanation
Indices: 3748433--3748500 Score: 73
Period size: 32 Copynumber: 2.3 Consensus size: 28
3748423 CTATCATCGA
3748433 AACCATCCATTTTACTATCACCAAAACC
1 AACCATCCATTTTACTATCACCAAAACC
* **
3748461 AACCATCCTTCCCTTTTACTATCACTGAAACC
1 AACCA----TCCATTTTACTATCACCAAAACC
3748493 AACCATCC
1 AACCATCC
3748501 TTATCATTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
28 8 0.24
32 25 0.76
ACGTcount: A:0.34, C:0.38, G:0.01, T:0.26
Consensus pattern (28 bp):
AACCATCCATTTTACTATCACCAAAACC
Found at i:3748481 original size:32 final size:32
Alignment explanation
Indices: 3748442--3748502 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
3748432 AAACCATCCA
3748442 TTTTACTATCACCAAAACCAACCATCCTTCCC
1 TTTTACTATCACCAAAACCAACCATCCTTCCC
**
3748474 TTTTACTATCACTGAAACCAACCATCCTT
1 TTTTACTATCACCAAAACCAACCATCCTT
3748503 ATCATTGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.31, C:0.36, G:0.02, T:0.31
Consensus pattern (32 bp):
TTTTACTATCACCAAAACCAACCATCCTTCCC
Found at i:3757602 original size:13 final size:11
Alignment explanation
Indices: 3757577--3757612 Score: 54
Period size: 12 Copynumber: 3.1 Consensus size: 11
3757567 TGTTATTGAG
3757577 AAGAAAAAAAA
1 AAGAAAAAAAA
3757588 AAGGAAAAAAGAA
1 AA-GAAAAAA-AA
3757601 AAGAAAAAAAA
1 AAGAAAAAAAA
3757612 A
1 A
3757613 GGAGTTTGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 5 0.22
12 14 0.61
13 4 0.17
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:3775805 original size:12 final size:12
Alignment explanation
Indices: 3775790--3775815 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
3775780 TTATCATTAT
3775790 TTTATATATATA
1 TTTATATATATA
3775802 TTTATATATATA
1 TTTATATATATA
3775814 TT
1 TT
3775816 CTTTTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTATATATATA
Found at i:3782955 original size:37 final size:37
Alignment explanation
Indices: 3782914--3782986 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
3782904 TTAGACTTAA
*
3782914 ATATCCAAAATCGATAATTGATCAAATAAACATTTAG
1 ATATCCAAAATCAATAATTGATCAAATAAACATTTAG
*
3782951 ATATCCAAAATTAATAATTGATCAAATAAACATTTA
1 ATATCCAAAATCAATAATTGATCAAATAAACATTTA
3782987 AATTAATTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (37 bp):
ATATCCAAAATCAATAATTGATCAAATAAACATTTAG
Found at i:3784353 original size:103 final size:102
Alignment explanation
Indices: 3784172--3784380 Score: 337
Period size: 103 Copynumber: 2.0 Consensus size: 102
3784162 ATTGAGCTGT
*
3784172 TTTTCTTTAAGAAAAGTCACGAGTCTTTGGAGAAGTCTTCTGGATTGGGTAAATTTCAATAATAG
1 TTTTCTTTAAAAAAAGTCACGAGTCTTTGGAGAAGTCTTCTGGATTGGGTAAATTTCAATAATAG
3784237 TCACCCAAATATTAATTTTAAATATATTTACCATATG
66 TCACCCAAATATTAATTTTAAATATATTTACCATATG
** * * *
3784274 TTTTCTTTAAAAAAACGTTGCGAGTTTTTGGATAAGTCTTCTGGATTGGGTAAATTTCAGTAATA
1 TTTTCTTTAAAAAAA-GTCACGAGTCTTTGGAGAAGTCTTCTGGATTGGGTAAATTTCAATAATA
* *
3784339 GTCACCCAATTATTAATTTTAAATATATTTACTATATG
65 GTCACCCAAATATTAATTTTAAATATATTTACCATATG
3784377 TTTT
1 TTTT
3784381 TATTATATAC
Statistics
Matches: 98, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
102 14 0.14
103 84 0.86
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (102 bp):
TTTTCTTTAAAAAAAGTCACGAGTCTTTGGAGAAGTCTTCTGGATTGGGTAAATTTCAATAATAG
TCACCCAAATATTAATTTTAAATATATTTACCATATG
Found at i:3795690 original size:15 final size:15
Alignment explanation
Indices: 3795670--3795701 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
3795660 AAATACAAAT
*
3795670 AAAAGAATTATTAGA
1 AAAAGAATTAATAGA
3795685 AAAAGAATTAATAGA
1 AAAAGAATTAATAGA
3795700 AA
1 AA
3795702 CAACTAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (15 bp):
AAAAGAATTAATAGA
Found at i:3798937 original size:8 final size:8
Alignment explanation
Indices: 3798924--3798950 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
3798914 AGCTCGACCT
3798924 AAATTTTA
1 AAATTTTA
3798932 AAATTTTA
1 AAATTTTA
3798940 AAATTTTA
1 AAATTTTA
3798948 AAA
1 AAA
3798951 ATAAAAAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
AAATTTTA
Found at i:3799832 original size:24 final size:26
Alignment explanation
Indices: 3799793--3799840 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
3799783 AATAATGGTA
*
3799793 AAATTATATTTTA-TTTTTTAAAATT
1 AAATTATATTTAATTTTTTTAAAATT
3799818 AAATTA-ATTTAATTTTTTTAAAA
1 AAATTATATTTAATTTTTTTAAAA
3799841 ATTATAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
AAATTATATTTAATTTTTTTAAAATT
Done.