Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 107 of 214
Found at i:32097952 original size:49 final size:49
Alignment explanation
Indices: 32097899--32098000 Score: 204
Period size: 49 Copynumber: 2.1 Consensus size: 49
32097889 AATTAATTTT
32097899 TAACAACACTTTAACTAATTAATTTTGACACATTCATTGTAACACCCCA
1 TAACAACACTTTAACTAATTAATTTTGACACATTCATTGTAACACCCCA
32097948 TAACAACACTTTAACTAATTAATTTTGACACATTCATTGTAACACCCCA
1 TAACAACACTTTAACTAATTAATTTTGACACATTCATTGTAACACCCCA
32097997 TAAC
1 TAAC
32098001 TGACTCGGTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.39, C:0.25, G:0.04, T:0.32
Consensus pattern (49 bp):
TAACAACACTTTAACTAATTAATTTTGACACATTCATTGTAACACCCCA
Found at i:32110738 original size:20 final size:21
Alignment explanation
Indices: 32110715--32110761 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
32110705 TAGGGTGATC
32110715 AGAAG-GTTTCGGCTAACAGA
1 AGAAGAGTTTCGGCTAACAGA
*
32110735 AGAAGCATTTTCGGCTAACAGA
1 AGAAG-AGTTTCGGCTAACAGA
32110757 AGAAG
1 AGAAG
32110762 CATAAGGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 5 0.21
22 19 0.79
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.19
Consensus pattern (21 bp):
AGAAGAGTTTCGGCTAACAGA
Found at i:32110747 original size:22 final size:22
Alignment explanation
Indices: 32110721--32110764 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
32110711 GATCAGAAGG
32110721 TTTCGGCTAACAGAAGAAGCAT
1 TTTCGGCTAACAGAAGAAGCAT
32110743 TTTCGGCTAACAGAAGAAGCAT
1 TTTCGGCTAACAGAAGAAGCAT
32110765 AAGGGAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (22 bp):
TTTCGGCTAACAGAAGAAGCAT
Found at i:32116693 original size:43 final size:44
Alignment explanation
Indices: 32116627--32116795 Score: 179
Period size: 43 Copynumber: 3.9 Consensus size: 44
32116617 AAGCTTGTAC
* *
32116627 GCCAA-TGTCCCAGACGTGGTCTTACATGTAATCAAATATCGAT
1 GCCAACTGTCCCAGACATGGTCTTACATGAAATCAAATATCGAT
* *
32116670 GCC-ACTGTCCCACACAAGGTCTTACATGAAATCAAATA-CGAT
1 GCCAACTGTCCCAGACATGGTCTTACATGAAATCAAATATCGAT
* * * * *
32116712 GCCGA-TGTCCCAGGCTTGGTCTTACACGTAAATCATAA-GTCGAT
1 GCCAACTGTCCCAGACATGGTCTTACATG-AAATCA-AATATCGAT
* *
32116756 GCCAAC-GTCCCAGACGTGGTCTTACATGAAATCATATATC
1 GCCAACTGTCCCAGACATGGTCTTACATGAAATCAAATATC
32116796 AAAAATCCTA
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
42 27 0.26
43 47 0.46
44 29 0.28
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (44 bp):
GCCAACTGTCCCAGACATGGTCTTACATGAAATCAAATATCGAT
Found at i:32116777 original size:86 final size:85
Alignment explanation
Indices: 32116631--32116789 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 85
32116621 TTGTACGCCA
*
32116631 ATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCACACAAGGTCTTACA
1 ATGTCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCACACAAGGTCTTACA
32116696 TGAAATCAAATACGATGCCG
66 TGAAATCAAATACGATGCCG
* * * * **
32116716 ATGTCCCAGGCTTGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGACGTGGTCTT
1 ATGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCACACAAGGTCTT
32116779 ACATGAAATCA
63 ACATGAAATCA
32116790 TATATCAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 22 0.34
86 38 0.59
87 4 0.06
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (85 bp):
ATGTCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCACACAAGGTCTTACA
TGAAATCAAATACGATGCCG
Found at i:32121166 original size:40 final size:40
Alignment explanation
Indices: 32121107--32121318 Score: 259
Period size: 40 Copynumber: 5.3 Consensus size: 40
32121097 CATTTGAATG
*
32121107 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
32121147 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
32121187 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
32121227 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
32121267 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
32121307 ATATCC-GGCTAA
1 ATATCCGGGCTAA
32121319 ATTCCGAAGA
Statistics
Matches: 151, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 7 0.05
40 141 0.93
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:32129447 original size:40 final size:40
Alignment explanation
Indices: 32129388--32129599 Score: 252
Period size: 40 Copynumber: 5.3 Consensus size: 40
32129378 CATTTGAATG
*
32129388 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
32129428 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
32129468 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
32129508 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
32129548 ATA-CCTAGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
32129588 ATATCC-GGCTAA
1 ATATCCGGGCTAA
32129600 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 15, Indels: 11
0.85 0.08 0.06
Matches are distributed among these distances:
39 9 0.06
40 138 0.91
41 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:32139014 original size:42 final size:41
Alignment explanation
Indices: 32138923--32139079 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 41
32138913 CAATGCCAAC
* * * * *
32138923 GTCCCAAACATGGTGTTACATGTAATCAAATATCGATGTCACT
1 GTCCCAGACAGGGTCTTACACGAAATCAAATA-CGATGTCA-T
32138966 GTCCCAGACAGGGTCTTACACGAAATCAAATACGATGTCGAT
1 GTCCCAGACAGGGTCTTACACGAAATCAAATACGATGTC-AT
** * *
32139008 GTCCCAGACATAGTCTTACACGTAAATCATAAGT-CGATGCCAAC
1 GTCCCAGACAGGGTCTTACACG-AAATCA-AA-TACGATGTC-AT
32139052 GTCCCAGAC-GTGGTCTTACACGAAATCA
1 GTCCCAGACAG-GGTCTTACACGAAATCA
32139080 TCATATATCA
Statistics
Matches: 97, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.29
43 40 0.41
44 28 0.29
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (41 bp):
GTCCCAGACAGGGTCTTACACGAAATCAAATACGATGTCAT
Found at i:32145132 original size:44 final size:43
Alignment explanation
Indices: 32145057--32145139 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 43
32145047 ATTTCCCTTT
*
32145057 TTCTATTTCTTTCCATTTTCTTCTCCCTTTATTTCATTTTCAA
1 TTCTATTTCTTTCCATTTTCTTCTCCCTTTATTTAATTTTCAA
*
32145100 TTCTATTTCTTTTCCATCTTT-TAT-TCCTTTTATTTAATTT
1 TTCTATTTC-TTTCCAT-TTTCT-TCTCCCTTTATTTAATTT
32145140 ATATAATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
43 9 0.26
44 22 0.63
45 4 0.11
ACGTcount: A:0.14, C:0.22, G:0.00, T:0.64
Consensus pattern (43 bp):
TTCTATTTCTTTCCATTTTCTTCTCCCTTTATTTAATTTTCAA
Found at i:32145158 original size:13 final size:13
Alignment explanation
Indices: 32145140--32145169 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32145130 TATTTAATTT
32145140 ATATAATATAATA
1 ATATAATATAATA
32145153 ATATAATATAATA
1 ATATAATATAATA
32145166 ATAT
1 ATAT
32145170 TTTCTTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:32149701 original size:47 final size:45
Alignment explanation
Indices: 32149607--32149726 Score: 147
Period size: 47 Copynumber: 2.7 Consensus size: 45
32149597 ATTTGTGTTT
* *
32149607 ATGCCGTGTCCCAGACA-GGTCTTACACTGACACATGTCAAGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCAAGCTG
* * *
32149651 ATGCCATGTCCTAGACATGGTCTGACACTAGCTCACATCTCAAG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCAAGCT-G
32149698 ATGCCATGTCCCAGACAT-GTCTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
32149727 GCTTTCACTA
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 15 0.23
45 11 0.17
46 11 0.17
47 28 0.43
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (45 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCAAGCTG
Found at i:32155055 original size:27 final size:26
Alignment explanation
Indices: 32155011--32155062 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32155001 GGACTATCGA
*
32155011 TTTACCCCTGGAGGGTAAAATGACTAT
1 TTTACCCCTGGAGCGT-AAATGACTAT
* *
32155038 TTTACCCCTTGTGCGTAAATGACTA
1 TTTACCCCTGGAGCGTAAATGACTA
32155063 ACTTGTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
TTTACCCCTGGAGCGTAAATGACTAT
Found at i:32155704 original size:27 final size:26
Alignment explanation
Indices: 32155660--32155711 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32155650 CTTGCTGCAA
*
32155660 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
32155687 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
32155712 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:32155776 original size:33 final size:32
Alignment explanation
Indices: 32155727--32155790 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
32155717 CTCGCTGCAA
* *
32155727 TCTGGTGGCTTCGCCACACATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
32155760 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
32155791 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:32157645 original size:42 final size:42
Alignment explanation
Indices: 32157532--32157658 Score: 146
Period size: 43 Copynumber: 3.0 Consensus size: 42
32157522 TCGTAAGCTC
* * * * *
32157532 ATACAATGCCAATGTCTCAGACGTGGTCTTACATGTAGTCAA
1 ATACGATGCCAATGTCTCAGACATGGTCTTACACGAAATCAA
* * * * *
32157574 ATATCGAAGCCACTGTCCCAGACAAGGTCTTACACGAAATCAT
1 ATA-CGATGCCAATGTCTCAGACATGGTCTTACACGAAATCAA
32157617 ATACGATGCCAATGTCTCAGACATGGTCTTACACGTAAATCA
1 ATACGATGCCAATGTCTCAGACATGGTCTTACACG-AAATCA
32157659 CCAGTTGATG
Statistics
Matches: 69, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
42 31 0.45
43 38 0.55
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAATGTCTCAGACATGGTCTTACACGAAATCAA
Found at i:32157682 original size:44 final size:42
Alignment explanation
Indices: 32157531--32157689 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
32157521 CTCGTAAGCT
* * * * * * *
32157531 CATACAATGCCAATGTCTCAGACGTGGTCTTACATGTAGTCA
1 CATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
* * *
32157573 AATATCGAAGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCA
1 CATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCA
* * *
32157616 TATACGATGCCAATGTCTCAGACATGGTCTTACACGTAAATCA
1 CATACGATGCCAACGTCCCAGACATGGTCTTACACG-AAATCA
* *
32157659 CCAGT-TGATGCCAACGTCCCAGACGTGGTCT
1 -CA-TACGATGCCAACGTCCCAGACATGGTCT
32157690 CGATAACACA
Statistics
Matches: 91, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
42 30 0.33
43 37 0.41
44 23 0.25
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
CATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
Found at i:32164535 original size:23 final size:23
Alignment explanation
Indices: 32164505--32164551 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
32164495 AGGTATCAAG
32164505 TTAATTCATACCTGACATATGGC
1 TTAATTCATACCTGACATATGGC
32164528 TTAATTCATACCTGACATATGGC
1 TTAATTCATACCTGACATATGGC
32164551 T
1 T
32164552 CGTTTTACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (23 bp):
TTAATTCATACCTGACATATGGC
Found at i:32165776 original size:30 final size:30
Alignment explanation
Indices: 32165740--32165799 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
32165730 GTGTCCATCC
32165740 AAACATCCAAGGGTATAATTGCATTATAAA
1 AAACATCCAAGGGTATAATTGCATTATAAA
*
32165770 AAACATCCAAGGGTATAATTGCGTTATAAA
1 AAACATCCAAGGGTATAATTGCATTATAAA
32165800 CACCCCACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (30 bp):
AAACATCCAAGGGTATAATTGCATTATAAA
Found at i:32167858 original size:44 final size:43
Alignment explanation
Indices: 32167751--32167841 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 43
32167741 AAAGCCACTA
* * * *
32167751 TCCCAGACAAGGTCTTACACG-AAATCATATACGATGCCAATG
1 TCCCAAACATGGTCTTACACGAAAATCACAAACGATGCCAATG
*
32167793 TCTCAAACATGGTCTTACACGAAAATCACAAATCGATGCCAATG
1 TCCCAAACATGGTCTTACACGAAAATCACAAA-CGATGCCAATG
32167837 TCCCA
1 TCCCA
32167842 GATGTGGTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 18 0.44
43 8 0.20
44 15 0.37
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.22
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACACGAAAATCACAAACGATGCCAATG
Found at i:32169235 original size:22 final size:25
Alignment explanation
Indices: 32169186--32169235 Score: 70
Period size: 22 Copynumber: 2.1 Consensus size: 25
32169176 AACACAAAGA
32169186 TTCTATCCTCTATTTTCTTCCTCCT
1 TTCTATCCTCTATTTTCTTCCTCCT
*
32169211 TTCT-TCCT-TATTTTC-TCCTCTT
1 TTCTATCCTCTATTTTCTTCCTCCT
32169233 TTC
1 TTC
32169236 ACTCACCTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 9 0.38
23 7 0.29
24 4 0.17
25 4 0.17
ACGTcount: A:0.06, C:0.34, G:0.00, T:0.60
Consensus pattern (25 bp):
TTCTATCCTCTATTTTCTTCCTCCT
Found at i:32170704 original size:20 final size:20
Alignment explanation
Indices: 32170679--32170778 Score: 76
Period size: 20 Copynumber: 5.0 Consensus size: 20
32170669 TTGTCCACTT
*
32170679 ATACTGACAGCTTTTCTACA
1 ATACTGACAGCTTGTCTACA
***
32170699 ATACTGGTGGCTTGTCTACA
1 ATACTGACAGCTTGTCTACA
** * *
32170719 ATACTGGTAGCTTGTTTGCA
1 ATACTGACAGCTTGTCTACA
*** *
32170739 ATACTGGTGGCTTGTCCACA
1 ATACTGACAGCTTGTCTACA
*
32170759 ATACTGGCAGCTTGT-TACA
1 ATACTGACAGCTTGTCTACA
32170778 A
1 A
32170779 CCATGGGTAT
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
19 4 0.06
20 62 0.94
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (20 bp):
ATACTGACAGCTTGTCTACA
Found at i:32170774 original size:40 final size:40
Alignment explanation
Indices: 32170605--32170774 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
32170595 GGAAGTATTA
* * *
32170605 GCAGCTTATTTGCAACATTGGTGAC-TGTCCACATATACTG
1 GCAGCTTGTTTGCAACACTGGTGGCTTGTCCACA-ATACTG
* * * *
32170645 GCAGCTTGTCTGCAACACTAGT-GTTTGTCCACTTATACTG
1 GCAGCTTGTTTGCAACACTGGTGGCTTGTCCAC-AATACTG
* * * *
32170685 ACAGCTT-TTCTACAATACTGGTGGCTTGTCTACAATACTG
1 GCAGCTTGTT-TGCAACACTGGTGGCTTGTCCACAATACTG
* *
32170725 GTAGCTTGTTTGCAATACTGGTGGCTTGTCCACAATACTG
1 GCAGCTTGTTTGCAACACTGGTGGCTTGTCCACAATACTG
32170765 GCAGCTTGTT
1 GCAGCTTGTT
32170775 ACAACCATGG
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 1 0.01
40 94 0.90
41 10 0.10
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (40 bp):
GCAGCTTGTTTGCAACACTGGTGGCTTGTCCACAATACTG
Found at i:32174134 original size:46 final size:46
Alignment explanation
Indices: 32174084--32174259 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
32174074 TGGTTGAGCA
32174084 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32174130 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
32174175 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32174223 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32174260 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32174240 original size:93 final size:93
Alignment explanation
Indices: 32174081--32174252 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
32174071 GGATGGTTGA
* *
32174081 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32174146 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32174174 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32174239 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32174253 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32177020 original size:6 final size:6
Alignment explanation
Indices: 32177009--32177109 Score: 95
Period size: 6 Copynumber: 16.8 Consensus size: 6
32176999 AACCAAAATA
*
32177009 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
32177057 AGTAA-C AGACTC AGAATC AGAATC A-ATATT AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
32177105 AGAAT
1 AGAAT
32177110 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
5 7 0.09
6 66 0.84
7 4 0.05
8 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:32177061 original size:30 final size:30
Alignment explanation
Indices: 32177009--32177109 Score: 168
Period size: 30 Copynumber: 3.4 Consensus size: 30
32176999 AACCAAAATA
*
32177009 AGAATCAGAATCAGA-ATCAGTAACAGAATC
1 AGAATCAGAATCA-ATATTAGTAACAGAATC
*
32177039 AGAATCAGAATCAATATTAGTAACAGACTC
1 AGAATCAGAATCAATATTAGTAACAGAATC
32177069 AGAATCAGAATCAATATTAGTAACAGAATC
1 AGAATCAGAATCAATATTAGTAACAGAATC
32177099 AGAATCAGAAT
1 AGAATCAGAAT
32177110 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
29 1 0.01
30 66 0.99
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAATATTAGTAACAGAATC
Found at i:32177264 original size:27 final size:26
Alignment explanation
Indices: 32177227--32177292 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
32177217 AGCATGGCTG
*
32177227 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
32177253 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
32177280 CCAGAATCAGATA
1 CCAGAA-CAGATA
32177293 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:32177297 original size:27 final size:27
Alignment explanation
Indices: 32177227--32177300 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
32177217 AGCATGGCTG
* *
32177227 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
32177253 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
32177280 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
32177301 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:32177307 original size:27 final size:27
Alignment explanation
Indices: 32177251--32177308 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
32177241 GTGACAGAGT
* * *
32177251 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
32177278 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
32177305 CACC
1 CACC
32177309 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:32177513 original size:22 final size:22
Alignment explanation
Indices: 32177465--32177523 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
32177455 GTAAATACGT
*
32177465 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
32177487 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
32177509 TTGGCACAAATCCAT
1 TTGGCACAAAGCCAT
32177524 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:32177692 original size:27 final size:26
Alignment explanation
Indices: 32177611--32177693 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
32177601 TCGATCGGTC
* * *
32177611 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
32177637 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
32177664 AACAGATATTTGTGGCATAGCCACTAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
32177691 AAC
1 AAC
32177694 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:32177922 original size:27 final size:27
Alignment explanation
Indices: 32177892--32178007 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
32177882 GGGGCAAAAT
* * *
32177892 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
32177919 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
32177946 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
32177973 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
32178000 AGTAATTT
1 GGTAATTT
32178008 CACAATCAAG
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
26 3 0.04
27 67 0.92
28 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:32178041 original size:27 final size:27
Alignment explanation
Indices: 32178011--32178275 Score: 311
Period size: 27 Copynumber: 9.8 Consensus size: 27
32178001 GTAATTTCAC
* *
32178011 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32178038 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32178065 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
32178092 AATCAAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32178119 AATCGATGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
32178146 AATCGAGGGTAAAAAAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32178173 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
32178200 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
32178227 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
32178254 AATCAAGGGTAAAACGGTAATT
1 AATCGAGGGTAAAACGGTAATT
32178276 TTACAAGTCG
Statistics
Matches: 201, Mismatches: 31, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.01
27 195 0.97
28 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:32178302 original size:81 final size:81
Alignment explanation
Indices: 32178011--32178289 Score: 375
Period size: 81 Copynumber: 3.4 Consensus size: 81
32178001 GTAATTTCAC
* *
32178011 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-GATAATTTTGTAAACTGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAG-TAATTCTGTAAACTGAGGGT
*
32178075 AAACCAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* * * *
32178092 AATCAAGGGTAAAACGATAATTTTACAAATCGATGGTAAAACGGTAATTCTGTAAA-TCGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTGTAAACT-GAGGGT
*
32178156 AAAAAAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* * * *
32178173 AA-CTGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGT
1 AATC-AAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGT
*
32178237 AAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* *
32178254 AATCAAGGGTAAAACGGTAATTTTACAAGTCGAGGG
1 AATCAAGGGTAAAACGGTAATTCTACAAATCGAGGG
32178290 CATTTCAGTA
Statistics
Matches: 171, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.01
81 166 0.97
82 3 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTA
AAACAGTAATTCTGTA
Found at i:32180624 original size:46 final size:47
Alignment explanation
Indices: 32180559--32180913 Score: 463
Period size: 46 Copynumber: 7.7 Consensus size: 47
32180549 TTATCTTTGA
* * * *
32180559 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
*
32180605 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TCCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* * *
32180651 CAAGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-GTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* * * ** **
32180697 CACGCTGCCATGGTATCTTTCAACCATGGTGTTTTTCA-TTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* *
32180743 CATGTTGCCATGGTATATTTCAACCATGGTCTTATTC-TTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* * *
32180789 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
* *
32180835 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
32180881 CATGTTGCCATGGTATCTTTCAACCATGGTCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTT
32180914 TCAACCATGG
Statistics
Matches: 278, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
45 7 0.03
46 269 0.97
47 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATGT
Found at i:32180812 original size:138 final size:138
Alignment explanation
Indices: 32180564--32180913 Score: 520
Period size: 138 Copynumber: 2.5 Consensus size: 138
32180554 TTTGACATGA
* * * *
32180564 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
** *
32180629 CATGGTCTTATCCTTTTCATGTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCA
66 CATGGTCTTATCCTTTTCATGTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
32180694 TGTCACGC
131 TATCACGC
* ** * *
32180702 TGCCATGGTATCTTTCAACCATGGTGTTTTTCATTTCCCGTCATGTTGCCATGGTATATTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
* *
32180767 CATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTATCCTTTTCATGTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
* *
32180832 TATCATGT
131 TATCACGC
* * *
32180840 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
32180905 CATGGTCTT
66 CATGGTCTT
32180914 TCAACCATGG
Statistics
Matches: 187, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 187 1.00
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.41
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATCCTTTTCATGTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCACGC
Found at i:32180894 original size:30 final size:30
Alignment explanation
Indices: 32180858--32180954 Score: 78
Period size: 30 Copynumber: 3.2 Consensus size: 30
32180848 TATCTTTCAA
32180858 CCATGGTCTTACACATTTCATATCATGTTG
1 CCATGGTCTTACACATTTCATATCATGTTG
* * * *
32180888 CCATGGTATCTTTCA-A--CCATGGTC-T-TTCAA
1 CCATGG--TCTTACACATTTCAT-ATCATGTT--G
32180918 CCATGGTCTTACACATTTCATATCATGTTG
1 CCATGGTCTTACACATTTCATATCATGTTG
32180948 CCATGGT
1 CCATGGT
32180955 ATCTTTCAAC
Statistics
Matches: 49, Mismatches: 8, Indels: 20
0.64 0.10 0.26
Matches are distributed among these distances:
28 8 0.16
29 5 0.10
30 23 0.47
31 5 0.10
32 8 0.16
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (30 bp):
CCATGGTCTTACACATTTCATATCATGTTG
Found at i:32180907 original size:16 final size:15
Alignment explanation
Indices: 32180888--32180924 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
32180878 TATCATGTTG
32180888 CCATGGTATCTTTCAA
1 CCATGGT-TCTTTCAA
32180904 CCATGG-TCTTTCAA
1 CCATGGTTCTTTCAA
32180918 CCATGGT
1 CCATGGT
32180925 CTTACACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 14 0.70
16 6 0.30
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (15 bp):
CCATGGTTCTTTCAA
Found at i:32180915 original size:14 final size:14
Alignment explanation
Indices: 32180896--32180927 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
32180886 TGCCATGGTA
32180896 TCTTTCAACCATGG
1 TCTTTCAACCATGG
32180910 TCTTTCAACCATGG
1 TCTTTCAACCATGG
32180924 TCTT
1 TCTT
32180928 ACACATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.19, C:0.28, G:0.12, T:0.41
Consensus pattern (14 bp):
TCTTTCAACCATGG
Found at i:32180923 original size:60 final size:60
Alignment explanation
Indices: 32180850--32180973 Score: 239
Period size: 60 Copynumber: 2.1 Consensus size: 60
32180840 TGCCATGGTA
32180850 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGG
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGG
*
32180910 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACTATGG
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGG
32180970 TCTT
1 TCTT
32180974 ACGCATTTCA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (60 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGG
Found at i:32194581 original size:41 final size:41
Alignment explanation
Indices: 32194533--32194622 Score: 144
Period size: 41 Copynumber: 2.2 Consensus size: 41
32194523 GTCCTATGAG
* *
32194533 TGACAGCTTGTGTGAGCAGCACTCTGTAGCTACGTCCTGAC
1 TGACAGCTTGTGTGAGCAGCACTCTATAGCTACGTCCTAAC
*
32194574 TGACAGCTTGTTTGAGCAGCACTCTATAGCTACGTCCTAAC
1 TGACAGCTTGTGTGAGCAGCACTCTATAGCTACGTCCTAAC
*
32194615 TGATAGCT
1 TGACAGCT
32194623 CAAAAACGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (41 bp):
TGACAGCTTGTGTGAGCAGCACTCTATAGCTACGTCCTAAC
Found at i:32195834 original size:16 final size:17
Alignment explanation
Indices: 32195803--32195836 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
32195793 TGGGTTAGGG
32195803 ACACGGGCGTGTGTGACT
1 ACACGGGCG-GTGTGACT
32195821 ACACGGGC-GTGTGACT
1 ACACGGGCGGTGTGACT
32195837 CCTGTTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.24, G:0.38, T:0.21
Consensus pattern (17 bp):
ACACGGGCGGTGTGACT
Found at i:32197282 original size:46 final size:46
Alignment explanation
Indices: 32197232--32197403 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
32197222 TGAGCATCCA
*
32197232 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
32197278 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
32197325 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
32197371 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32197404 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:32197384 original size:93 final size:93
Alignment explanation
Indices: 32197225--32197396 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32197215 GGATGGTTGA
* * *
32197225 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32197290 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
32197318 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32197383 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32197397 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32204846 original size:46 final size:46
Alignment explanation
Indices: 32204796--32204967 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
32204786 TGAGCATCCA
*
32204796 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
32204842 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
32204889 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
** * *
32204935 GGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32204968 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.55
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:32204948 original size:93 final size:93
Alignment explanation
Indices: 32204789--32204960 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
32204779 GGATGGTTGA
* * * *
32204789 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
32204854 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* **
32204882 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGGGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
32204947 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32204961 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32216846 original size:39 final size:40
Alignment explanation
Indices: 32216801--32216972 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
32216791 GCTCCTCGTT
* * *
32216801 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
32216841 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
32216880 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
32216920 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
32216960 CAAATGCCTTCGG
1 CAAATGCCTTCGG
32216973 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:32216901 original size:40 final size:39
Alignment explanation
Indices: 32216803--32217025 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
32216793 TCCTCGTTCA
* * * *
32216803 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
32216842 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
32216881 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
32216921 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
32216961 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
32217002 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32217026 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:32216985 original size:80 final size:79
Alignment explanation
Indices: 32216801--32217025 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
32216791 GCTCCTCGTT
* * * * *
32216801 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
32216865 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
32216880 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
32216945 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
32216960 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
32217024 GA
63 GA
32217026 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:32217034 original size:41 final size:41
Alignment explanation
Indices: 32216957--32217034 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
32216947 TTTGTATCTC
* * *
32216957 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
32216998 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
32217035 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:32232500 original size:28 final size:27
Alignment explanation
Indices: 32232436--32232616 Score: 263
Period size: 28 Copynumber: 6.6 Consensus size: 27
32232426 TTATTAAGTC
* *
32232436 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
32232463 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
32232491 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
32232519 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
32232547 CGCACACTTAGTGCTACATAGTTAAACT
1 CGCACACTTAGTGCTACATA-ATCAACT
* *
32232575 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
32232602 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32232617 GCACAATTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
27 42 0.29
28 100 0.69
29 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32232628 original size:56 final size:54
Alignment explanation
Indices: 32232459--32232641 Score: 233
Period size: 56 Copynumber: 3.3 Consensus size: 54
32232449 CTATATAATC
* *
32232459 AACTCGCACACTTAGTGCTACATAATCATACTCGCACACTTAGTGCTACATAATCA
1 AACTCGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCT-CACAATTA
* *
32232515 TACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCT-ACATAGTTA
1 AACTCGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTCACA-A-TTA
* *
32232571 AACTCGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTA
1 AACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT-CACAA-TTA
*
32232627 AACCCGCACACTTAG
1 AACTCGCACACTTAG
32232642 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 10
0.86 0.07 0.08
Matches are distributed among these distances:
54 2 0.02
55 19 0.17
56 88 0.78
57 4 0.04
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (54 bp):
AACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTCACAATTA
Found at i:32232635 original size:84 final size:84
Alignment explanation
Indices: 32232436--32232641 Score: 265
Period size: 84 Copynumber: 2.5 Consensus size: 84
32232426 TTATTAAGTC
* * * * *
32232436 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACATAATCATACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
32232500 AGTGCTACATAATCATACT
66 AGTGCTACATAATCATACT
* * *
32232519 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTTAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
* *
32232584 AGTGCTACATATTCA-ATT
66 AGTGCTACATAATCATACT
* *
32232602 CGCACACTTAGTGCTGCACA-ATTTAAACCCGCACACTTAG
1 CGCACACTTAGTGCT--ACATAGTCAAACCCGCACACTTAG
32232642 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
83 37 0.34
84 69 0.63
85 3 0.03
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (84 bp):
CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
AGTGCTACATAATCATACT
Found at i:32240532 original size:28 final size:27
Alignment explanation
Indices: 32240468--32240619 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
32240458 TTATTAAGTC
* *
32240468 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
32240495 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
32240523 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32240550 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
32240578 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
32240605 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32240620 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32240552 original size:55 final size:55
Alignment explanation
Indices: 32240468--32240644 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
32240458 TTATTAAGTC
* * *
32240468 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
32240523 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
32240578 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
32240634 CGCACACTTAG
1 CGCACACTTAG
32240645 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32248527 original size:28 final size:27
Alignment explanation
Indices: 32248463--32248614 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
32248453 TTATTAAGTC
* *
32248463 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
32248490 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
32248518 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32248545 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
32248573 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
32248600 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32248615 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32248531 original size:55 final size:55
Alignment explanation
Indices: 32248463--32248639 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
32248453 TTATTAAGTC
* * *
32248463 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
32248518 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
32248573 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
32248629 CGCACACTTAG
1 CGCACACTTAG
32248640 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:32252876 original size:126 final size:126
Alignment explanation
Indices: 32252642--32252922 Score: 456
Period size: 126 Copynumber: 2.2 Consensus size: 126
32252632 GCCAAATAAG
* *
32252642 AACTACTGTAGCAAAAGAGCGTCCACATGAGAGCTTCTTTCAGTACTTTTGCTGACATTGCATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
* * *
32252707 TGCTTGAAGCATTTTGGACACTATTTGCTCAGAAACATTTTCTCAAAATTATTTTTTCAGA
66 TGCTTAAAGCATTTTGGACACTATTTGCTCAAAAACATCTTCTCAAAATTATTTTTTCAGA
*
32252768 AACTACTGTAGCAAAAGAGCGTCTACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
1 AACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
* * *
32252833 TGCTTAAAGCGTGTTT-GACACTATTTGCTCAAAAACGTCTTCTCAAAATTATTTTTTCAGG
66 TGCTTAAAGCAT-TTTGGACACTATTTGCTCAAAAACATCTTCTCAAAATTATTTTTTCAGA
*
32252894 AACTACAGTAGCAAAAGAGCGTCCACGTG
1 AACTACTGTAGCAAAAGAGCGTCCACGTG
32252923 GAAGATTTTT
Statistics
Matches: 143, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
126 140 0.98
127 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (126 bp):
AACTACTGTAGCAAAAGAGCGTCCACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCC
TGCTTAAAGCATTTTGGACACTATTTGCTCAAAAACATCTTCTCAAAATTATTTTTTCAGA
Found at i:32253255 original size:193 final size:191
Alignment explanation
Indices: 32252954--32253382 Score: 630
Period size: 193 Copynumber: 2.2 Consensus size: 191
32252944 ATAATTAAAT
* * *
32252954 TAACCCTAAACCCTAATTTATTTGATTTTTCCTTAAAACCCTAAACCCTAAATCCTAATCTAATT
1 TAACCCTAAACCCTAATTTATTTGATTTTTCCTTAAAACCTTAAACACTAAACCCTAATCTAATT
* * * *
32253019 TTTTTAAAATTTATAGTTAATTTACTTAAGTAACTCCAAACCCTAATTTATTTGATTTTTTCCTT
66 TTTTAAAAATTTATAATTAATTTACTCAAGTAACTCCAAACCCTAATTTATTTAATTTTTTCCTT
* * * *
32253084 AAAAAACC-TAAACACTAAAGCTTAATCTAATTTTTTTTAAAATTTATAATTAATTTACTCAAG
131 -AAAAACCATAAACACTAAACCCTAATCTAA--TTTTTTAAAACTTATAATTAATTTAATCAAG
* *
32253147 TAACCCTAAACCCTAATTTATTTGATTTTTTCTTAAAAACCTTAAACACTAAACCCTAATC-CAT
1 TAACCCTAAACCCTAATTTATTTGATTTTTCCTT-AAAACCTTAAACACTAAACCCTAATCTAAT
32253211 TTTTTAAAAATTTATAATTAATTTACTCAAGTAAC-CCTAAACCCTAATTTATTTAATTTTTTCC
65 TTTTTAAAAATTTATAATTAATTTACTCAAGTAACTCC-AAACCCTAATTTATTTAATTTTTTCC
*
32253275 TTAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAACTTATAATTAATTTAATTAAG
129 TTAAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAACTTATAATTAATTTAATCAAG
* * * *
32253338 AAACCCTAAACTCTTATTTATTTAATTTTTCCTTAAAACCTTAAA
1 TAACCCTAAACCCTAATTTATTTGATTTTTCCTTAAAACCTTAAA
32253383 TCTAAAAACC
Statistics
Matches: 214, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
190 11 0.05
191 57 0.27
192 9 0.04
193 114 0.53
194 23 0.11
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (191 bp):
TAACCCTAAACCCTAATTTATTTGATTTTTCCTTAAAACCTTAAACACTAAACCCTAATCTAATT
TTTTAAAAATTTATAATTAATTTACTCAAGTAACTCCAAACCCTAATTTATTTAATTTTTTCCTT
AAAAACCATAAACACTAAACCCTAATCTAATTTTTTAAAACTTATAATTAATTTAATCAAG
Found at i:32253282 original size:96 final size:97
Alignment explanation
Indices: 32252954--32253382 Score: 606
Period size: 96 Copynumber: 4.5 Consensus size: 97
32252944 ATAATTAAAT
* * *
32252954 TAACCCTAAACCCTAATTTATTTGA-TTTTTCCTT-AAAACCCTAAACCCTAAATCCTAATCTAA
1 TAACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAA
* *
32253017 TTTTTTTAAAATTTATAGTTAATTTACTTAAG
66 TTTTTTTAAAATTTATAATTAATTTACTCAAG
* *
32253049 TAACTCC-AAACCCTAATTTATTTGATTTTTTCCTTAAAAAACC-TAAACACTAAAGCTTAATCT
1 TAAC-CCTAAACCCTAATTTATTTGATTTTTTCCTT-AAAAACCTTAAACACTAAACCCTAATCT
32253112 AATTTTTTTTAAAATTTATAATTAATTTACTCAAG
64 AA-TTTTTTTAAAATTTATAATTAATTTACTCAAG
*
32253147 TAACCCTAAACCCTAATTTATTTGATTTTTT-CTTAAAAACCTTAAACACTAAACCCTAATC-CA
1 TAACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAA
*
32253210 TTTTTTAAAAATTTATAATTAATTTACTCAAG
66 TTTTTTTAAAATTTATAATTAATTTACTCAAG
* *
32253242 TAACCCTAAACCCTAATTTATTTAATTTTTTCCTTAAAAACCATAAACACTAAACCCTAATCTAA
1 TAACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAA
* * *
32253307 -TTTTTTAAAACTTATAATTAATTTAATTAAG
66 TTTTTTTAAAATTTATAATTAATTTACTCAAG
* * * *
32253338 AAACCCTAAACTCTTATTTATTT-AATTTTTCCTT-AAAACCTTAAA
1 TAACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCTTAAA
32253383 TCTAAAAACC
Statistics
Matches: 304, Mismatches: 21, Indels: 19
0.88 0.06 0.06
Matches are distributed among these distances:
94 10 0.03
95 93 0.31
96 95 0.31
97 42 0.14
98 64 0.21
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (97 bp):
TAACCCTAAACCCTAATTTATTTGATTTTTTCCTTAAAAACCTTAAACACTAAACCCTAATCTAA
TTTTTTTAAAATTTATAATTAATTTACTCAAG
Found at i:32257578 original size:4 final size:4
Alignment explanation
Indices: 32257561--32257594 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
32257551 AAGAATTCAA
*
32257561 ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
32257595 TTCAACATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (4 bp):
ATAC
Found at i:32267543 original size:50 final size:50
Alignment explanation
Indices: 32267463--32267575 Score: 154
Period size: 50 Copynumber: 2.2 Consensus size: 50
32267453 TGATGGATTA
* * **
32267463 TATGGGATAGAAATGAATCAAATGGCTTTGCGGAGGAAAGTTTGGTTAAGC
1 TATGGGA-AGAAATGAATCAAATAGATTTGCGGAGGAAAGGCTGGTTAAGC
* *
32267514 TATGGGAATAAATGAATCAAATAGATTTGCGGAGGAAAGGCTGGTTAAGT
1 TATGGGAAGAAATGAATCAAATAGATTTGCGGAGGAAAGGCTGGTTAAGC
*
32267564 TATAGGAAGAAA
1 TATGGGAAGAAA
32267576 GGAGTTTCGC
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
50 47 0.87
51 7 0.13
ACGTcount: A:0.38, C:0.06, G:0.30, T:0.26
Consensus pattern (50 bp):
TATGGGAAGAAATGAATCAAATAGATTTGCGGAGGAAAGGCTGGTTAAGC
Found at i:32270112 original size:14 final size:14
Alignment explanation
Indices: 32270093--32270125 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
32270083 ATTTAACCAA
32270093 CACACCAGTAATGG
1 CACACCAGTAATGG
32270107 CACACCAGTAATGG
1 CACACCAGTAATGG
32270121 CACAC
1 CACAC
32270126 AAGTGTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.33, G:0.18, T:0.12
Consensus pattern (14 bp):
CACACCAGTAATGG
Found at i:32278989 original size:19 final size:21
Alignment explanation
Indices: 32278944--32278987 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
32278934 GTATAAATAC
32278944 CCCCTTTTTATGTGTAATTTG
1 CCCCTTTTTATGTGTAATTTG
* *
32278965 CCCCTTTTTTTG-GTATTTTG
1 CCCCTTTTTATGTGTAATTTG
32278985 CCC
1 CCC
32278988 TTAATAATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.09, C:0.25, G:0.14, T:0.52
Consensus pattern (21 bp):
CCCCTTTTTATGTGTAATTTG
Found at i:32280351 original size:19 final size:18
Alignment explanation
Indices: 32280329--32280406 Score: 84
Period size: 20 Copynumber: 4.1 Consensus size: 18
32280319 AGTTATTAAG
32280329 AATTAGTAAAAATTATAAA
1 AATT-GTAAAAATTATAAA
32280348 AATTGTAAAAAAATTATAAA
1 AATTGT--AAAAATTATAAA
* **
32280368 AAATGTAACATTTTATAAAA
1 AATTGTAA-AAATTAT-AAA
32280388 AATTGTAAAAATTATAAA
1 AATTGTAAAAATTATAAA
32280406 A
1 A
32280407 TATATAGAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
18 8 0.16
19 14 0.29
20 27 0.55
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (18 bp):
AATTGTAAAAATTATAAA
Found at i:32280356 original size:9 final size:9
Alignment explanation
Indices: 32280329--32280517 Score: 62
Period size: 9 Copynumber: 19.7 Consensus size: 9
32280319 AGTTATTAAG
32280329 AATTAGTAAA
1 AATTA-TAAA
32280339 AATTATAAA
1 AATTATAAA
*
32280348 AATTGTAAAAA
1 AA-T-TATAAA
32280359 AATTATAAA
1 AATTATAAA
* *
32280368 AAATGTAACA
1 AATTATAA-A
**
32280378 TTTTATAAAA
1 AATTAT-AAA
*
32280388 AATTGTAAA
1 AATTATAAA
32280397 AATTAT-AA
1 AATTATAAA
*
32280405 AATATATAGA
1 AAT-TATAAA
*
32280415 AATATAGAAAA
1 AAT-TA-TAAA
32280426 AATTAT-AA
1 AATTATAAA
* *
32280434 ATTTTTATAA
1 AATTATA-AA
*
32280444 AGTTATAAGAA
1 AATTAT-A-AA
32280455 AATTGCA-AGAA
1 AATT--ATA-AA
*
32280466 AATTGTAAA
1 AATTATAAA
*
32280475 AATTTTAAA
1 AATTATAAA
32280484 AA-TATAAA
1 AATTATAAA
* *
32280492 ATTTGTAAAAA
1 A-AT-TATAAA
*
32280503 AATTAAAAA
1 AATTATAAA
32280512 AATTAT
1 AATTAT
32280518 CATGTCTCTC
Statistics
Matches: 134, Mismatches: 29, Indels: 33
0.68 0.15 0.17
Matches are distributed among these distances:
8 17 0.13
9 51 0.38
10 31 0.23
11 34 0.25
13 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (9 bp):
AATTATAAA
Found at i:32282067 original size:31 final size:31
Alignment explanation
Indices: 32282009--32282068 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
32281999 TCTTTAACTT
* *
32282009 TTTTTTATAATTTTTTTTATAAATTTATATA
1 TTTTTTACAATTTTTTTAATAAATTTATATA
* *
32282040 TTTTTTACAATTTTTTTAATTATTTTATA
1 TTTTTTACAATTTTTTTAATAAATTTATA
32282069 ACATATAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (31 bp):
TTTTTTACAATTTTTTTAATAAATTTATATA
Found at i:32282102 original size:19 final size:16
Alignment explanation
Indices: 32282077--32282119 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 16
32282067 TAACATATAA
32282077 AATTTATAATTATTTTAT
1 AATTTATAA-T-TTTTAT
32282095 ATATTTATAATTTTTAT
1 A-ATTTATAATTTTTAT
32282112 AATTTATA
1 AATTTATA
32282120 TTTCATAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.29
17 7 0.29
18 2 0.08
19 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
AATTTATAATTTTTAT
Found at i:32282800 original size:19 final size:20
Alignment explanation
Indices: 32282762--32282802 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
32282752 TAGAAAAATC
32282762 TTATTATGTATAAATTATAA
1 TTATTATGTATAAATTATAA
32282782 TTATTA-GT-TAAATTTATAA
1 TTATTATGTATAAA-TTATAA
32282801 TT
1 TT
32282803 TCCAGATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 10 0.50
20 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (20 bp):
TTATTATGTATAAATTATAA
Found at i:32282892 original size:22 final size:23
Alignment explanation
Indices: 32282867--32282911 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
32282857 TCAAGTGTAA
32282867 TTTGAACAA-AAA-AAAATTATTT
1 TTTGAA-AATAAATAAAATTATTT
*
32282889 TTTGAAAATAAATAAATTTATTT
1 TTTGAAAATAAATAAAATTATTT
32282912 CCAGTTGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 9 0.45
23 9 0.45
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.42
Consensus pattern (23 bp):
TTTGAAAATAAATAAAATTATTT
Found at i:32284444 original size:19 final size:19
Alignment explanation
Indices: 32284420--32284457 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32284410 CTCTCCAAAA
32284420 AAAATTATCACAATTAGAC
1 AAAATTATCACAATTAGAC
32284439 AAAATTATCACAATTAGAC
1 AAAATTATCACAATTAGAC
32284458 TTTTTCTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (19 bp):
AAAATTATCACAATTAGAC
Found at i:32285401 original size:26 final size:26
Alignment explanation
Indices: 32285372--32285423 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32285362 GCTTCAAGAT
*
32285372 CCAAAATGTATAACTTGTGTCAAATA
1 CCAAAATGCATAACTTGTGTCAAATA
*
32285398 CCAAAATGCATAACTTTTGTCAAATA
1 CCAAAATGCATAACTTGTGTCAAATA
32285424 TAGGTACCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (26 bp):
CCAAAATGCATAACTTGTGTCAAATA
Found at i:32288587 original size:17 final size:17
Alignment explanation
Indices: 32288565--32288601 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 17
32288555 ATATTAGTTT
32288565 TAAAAATATAAATATACA
1 TAAAAA-ATAAATATACA
32288583 TAAAAAATAAATATACA
1 TAAAAAATAAATATACA
32288600 TA
1 TA
32288602 TATATATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAAAAATAAATATACA
Found at i:32288647 original size:3 final size:3
Alignment explanation
Indices: 32288639--32288689 Score: 75
Period size: 3 Copynumber: 16.7 Consensus size: 3
32288629 GCATATGAAT
* *
32288639 ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATAA ATA ATA ATG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
32288685 ATA AT
1 ATA AT
32288690 TTATTTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32290079 original size:39 final size:39
Alignment explanation
Indices: 32289993--32290071 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
32289983 GCCAGGGAGA
32289993 TAGGATTTGTATGTTGTAGTTTCTTAAGAGAACAAAATT
1 TAGGATTTGTATGTTGTAGTTTCTTAAGAGAACAAAATT
32290032 TAGGATTTGTATGTTGTAGTTTCTTAAGAGAACAAAATT
1 TAGGATTTGTATGTTGTAGTTTCTTAAGAGAACAAAATT
32290071 T
1 T
32290072 GCTATTTGCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.42
Consensus pattern (39 bp):
TAGGATTTGTATGTTGTAGTTTCTTAAGAGAACAAAATT
Found at i:32290779 original size:44 final size:44
Alignment explanation
Indices: 32290708--32291298 Score: 561
Period size: 44 Copynumber: 13.7 Consensus size: 44
32290698 ACTATTTTCC
* * *
32290708 ACCTACTCCATTGCT-ACTCAGGGAGATAGGGTTCACAATCTTCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCA
* *
32290752 ACCTATTCCACTGCTGACCAAGGAGATAGGA-CCTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATCTTCA
* * *
32290796 ATCTATTCCACTGCT-ACCCAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGA-CCAGGGAGATAGGATTCACAATCTTCA
* *
32290840 ACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* * *
32290884 ACCTATTCTACTACTGTCCAGGGAGATAGGATT--C--T-TT-A
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* * * *
32290922 ATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* * *
32290966 GCCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* * * *
32291010 ACCTATTCCACTACT-ATTCAGGGAGATA-GA---GC--TCTTTA
1 ACCTATTCCACTGCTGA-CCAGGGAGATAGGATTCACAATCTTCA
* * * *
32291048 ATCTATTCCACTGCTG-CCTAGGGAGATAGAATTCTCAATCTTTA
1 ACCTATTCCACTGCTGACC-AGGGAGATAGGATTCACAATCTTCA
* * * *
32291092 ATCTATTCCACTACTGATCAGGGAGATAGGA-CCTACAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATCTTCA
* * * *
32291136 ATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
* * *
32291180 ACCTATTCCACTACTGACCAGGGAGATAGGATTCAGAATCTTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
** * ** * *
32291224 ACCTATTCCACTATTGTCCAGGGAGATAGGATTCTTTAATATTTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATCTTCA
* *
32291269 GCCTATTCCACTACTGACCAGGGAGATAGG
1 ACCTATTCCACTGCTGACCAGGGAGATAGG
32291299 GCTGAGGTCA
Statistics
Matches: 455, Mismatches: 68, Indels: 47
0.80 0.12 0.08
Matches are distributed among these distances:
37 1 0.00
38 57 0.13
39 3 0.01
40 3 0.01
42 3 0.01
43 8 0.02
44 340 0.75
45 40 0.09
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCA
Found at i:32290949 original size:170 final size:170
Alignment explanation
Indices: 32290754--32291263 Score: 653
Period size: 170 Copynumber: 3.0 Consensus size: 170
32290744 AATCTTCAAC
*
32290754 CTATTCCACTGCTGACCAAGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTACCCAGGG
1 CTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTACCCAGGG
*
32290819 AGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTA
66 AGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACTAGGGAGATAGGATTCACAATCTTTA
*
32290884 ACCTATTCTACTACTGTCCAGGGAGATAGGATTCTTTAAT
131 ACCTATTCCACTACTGTCCAGGGAGATAGGATTCTTTAAT
* * * ** *
32290924 CTATTCCACTGCTGCCCAGGGAGATAGAATTCT-CAATCTTCAGCCTATTCCACTGCTGA-CTAG
1 CTATTCCACTGCTGACCAGGGAGATAGGA-CCTACAATCTTCAATCTATTCCACTGCT-ACCCAG
* * * * *
32290987 GGAGATAGGATTCACAATCTTTAACCTATTCCACTACT-ATTCAGGGAGATA-GA---GC--TCT
64 GGAGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACT-AGGGAGATAGGATTCACAATCT
* * *
32291045 TTAATCTATTCCACTGCTG-CCTAGGGAGATAGAATTCTCAATCTTTAAT
128 TTAACCTATTCCACTACTGTCC-AGGGAGATAGGA---T---TCTTTAAT
* * *
32291094 CTATTCCACTACTGATCAGGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTGCCCAGGG
1 CTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTACCCAGGG
* *
32291159 AGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCAGAATCTTTA
66 AGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACTAGGGAGATAGGATTCACAATCTTTA
*
32291224 ACCTATTCCACTATTGTCCAGGGAGATAGGATTCTTTAAT
131 ACCTATTCCACTACTGTCCAGGGAGATAGGATTCTTTAAT
32291264 ATTTAGCCTA
Statistics
Matches: 283, Mismatches: 37, Indels: 40
0.79 0.10 0.11
Matches are distributed among these distances:
163 2 0.01
164 30 0.11
166 1 0.00
167 1 0.00
169 6 0.02
170 204 0.72
171 6 0.02
173 1 0.00
176 30 0.11
177 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (170 bp):
CTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTACCCAGGG
AGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACTAGGGAGATAGGATTCACAATCTTTA
ACCTATTCCACTACTGTCCAGGGAGATAGGATTCTTTAAT
Found at i:32290971 original size:126 final size:128
Alignment explanation
Indices: 32290708--32291298 Score: 651
Period size: 126 Copynumber: 4.6 Consensus size: 128
32290698 ACTATTTTCC
* * * * *
32290708 ACCTACTCCATTGCT-ACTCAGGGAGATAGGGTTCACAATCTTCAACCTATTCCACTGCTGACCA
1 ACCTATTCCACTGCTGACT-AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCA
* * *
32290772 AGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTACCCAGGGAGATAGAATTCTCAATCT
65 GGGAGATAGGA-CT---ATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCT
32290837 TCA
126 TCA
* *
32290840 ACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCTACTACTGTCCAG
1 ACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAG
32290905 GGAGATAGGA-T-TCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCA
66 GGAGATAGGACTATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCA
* *
32290966 GCCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACT-ATTCA
1 ACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGA-CCA
* *
32291030 GGGAGATA-GAGC--TCTTTAATCTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTTA
65 GGGAGATAGGA-CTATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCA
* * * * * * *
32291092 ATCTATTCCACTACTGA-TCAGGGAGATAGGA-CCTACAATCTTCAATCTATTCCACTGCTGCCC
1 ACCTATTCCACTGCTGACT-AGGGAGATAGGATTC-ACAATCTTTAACCTATTCCACTACTGACC
* * * * * * **
32291155 AGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCAGAATC
64 AGGGAGATAGGA--CT--ATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
*
32291220 TTTA
125 TTCA
** * * ** * *
32291224 ACCTATTCCACTATTGTCCAGGGAGATAGGATTCTTTAATATTTAGCCTATTCCACTACTGACCA
1 ACCTATTCCACTGCTGACTAGGGAGATAGGATTC-ACAATCTTTAACCTATTCCACTACTGACCA
32291289 GGGAGATAGG
65 GGGAGATAGG
32291299 GCTGAGGTCA
Statistics
Matches: 395, Mismatches: 49, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
125 4 0.01
126 221 0.56
127 1 0.00
128 1 0.00
130 1 0.00
132 131 0.33
133 36 0.09
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (128 bp):
ACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCAG
GGAGATAGGACTATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCA
Found at i:32291437 original size:88 final size:88
Alignment explanation
Indices: 32291312--32291707 Score: 589
Period size: 88 Copynumber: 4.5 Consensus size: 88
32291302 GAGGTCATCA
* * * *
32291312 ATCTGCTTCGCTATCGGTGTAGGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCTGCAACCTA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
32291377 GGGAGGCAAGGCTGGTGTCTTCG
66 GGGAGGCAAGGCTGGTGTCTTCG
* * * *
32291400 ATCTGCTTCGCTGTCGGTGCA-AAAGGGTAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCT
1 ATCTGCTTCGCTGTCGGTGCAGGAA-GGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCC
* *
32291464 AGGAAGGCAAGGCTGGCGTCTTCG
65 AGGGAGGCAAGGCTGGTGTCTTCG
*
32291488 ATCTGCTTCGCTGTCGGTGCA-GAAGGCAAGATTTGCTATTTTTAACCTGCTCCGCTGCAACCCA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
*
32291552 GGGAGGCAAGGCTGGTATCTTCG
66 GGGAGGCAAGGCTGGTGTCTTCG
* * * *
32291575 ATCTGCTTCACTGTCGGTGTAGGAAGGCAAGATCTTCTATTTTTAACCTGCTCCGCTACAACCCA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
* * *
32291640 GGGAGACAAGGCTAGTGTCTTTG
66 GGGAGGCAAGGCTGGTGTCTTCG
*
32291663 ATCTGCCTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
32291708 CTGATCTGCT
Statistics
Matches: 277, Mismatches: 29, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
87 77 0.28
88 200 0.72
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (88 bp):
ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
GGGAGGCAAGGCTGGTGTCTTCG
Found at i:32291557 original size:175 final size:176
Alignment explanation
Indices: 32291312--32291707 Score: 589
Period size: 175 Copynumber: 2.3 Consensus size: 176
32291302 GAGGTCATCA
* * *
32291312 ATCTGCTTCGCTATCGGTGTAGGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCTGCAACCTA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCTGCAACCCA
* * *
32291377 GGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCA-AAAGGGTAAGATCTGCTATT
66 GGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTGCAGAAA-GGCAAGATCTGCTATT
* * * * *
32291441 TTTAGCCTGCTCCGCTGCAACCTAGGAAGGCAAGGCTGGCGTCTTCG
130 TTTAACCTGCTCCGCTACAACCCAGGAAGACAAGGCTAGCGTCTTCG
* *
32291488 ATCTGCTTCGCTGTCGGTGCA-GAAGGCAAGATTTGCTATTTTTAACCTGCTCCGCTGCAACCCA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCTGCAACCCA
* * *
32291552 GGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTGTAGGAAGGCAAGATCTTCTATTT
66 GGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTGCAGAAAGGCAAGATCTGCTATTT
* * *
32291617 TTAACCTGCTCCGCTACAACCCAGGGAGACAAGGCTAGTGTCTTTG
131 TTAACCTGCTCCGCTACAACCCAGGAAGACAAGGCTAGCGTCTTCG
*
32291663 ATCTGCCTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
32291708 CTGATCTGCT
Statistics
Matches: 197, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
175 154 0.78
176 43 0.22
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (176 bp):
ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCTGCAACCCA
GGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTGCAGAAAGGCAAGATCTGCTATTT
TTAACCTGCTCCGCTACAACCCAGGAAGACAAGGCTAGCGTCTTCG
Found at i:32292861 original size:42 final size:42
Alignment explanation
Indices: 32292792--32292890 Score: 101
Period size: 42 Copynumber: 2.4 Consensus size: 42
32292782 TGCCCCAATT
* * ** * *
32292792 TGATCAAGATTCGAGTTGCTCTAATCACTTCATG-CCTCATTT
1 TGATCAAAATTTGAGTCACTCTAATCACCTCATGTCC-CATTC
** *
32292834 TGATCACTATTTGAGTCACTCTGATCACCTCATGTCCCATTC
1 TGATCAAAATTTGAGTCACTCTAATCACCTCATGTCCCATTC
32292876 TGATCAAAATTTGAG
1 TGATCAAAATTTGAG
32292891 CCGCCCTTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
42 44 0.96
43 2 0.04
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.36
Consensus pattern (42 bp):
TGATCAAAATTTGAGTCACTCTAATCACCTCATGTCCCATTC
Found at i:32297461 original size:17 final size:17
Alignment explanation
Indices: 32297439--32297475 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 17
32297429 ATATTAGTTT
32297439 TAAAAATATAAATATACA
1 TAAAAA-ATAAATATACA
32297457 TAAAAAATAAATATACA
1 TAAAAAATAAATATACA
32297474 TA
1 TA
32297476 TATATATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAAAAATAAATATACA
Found at i:32297571 original size:3 final size:3
Alignment explanation
Indices: 32297565--32297596 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
32297555 ACGAATTGCA
32297565 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
32297597 AAATGCAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:32303257 original size:27 final size:27
Alignment explanation
Indices: 32303075--32303294 Score: 169
Period size: 27 Copynumber: 8.2 Consensus size: 27
32303065 GATCGAATTA
* * * *
32303075 ACCC-CGAAAGGTAAAACTACCGAAAC
1 ACCCTCGAAGGGTAAAATTACTGAAAT
32303101 ACCCTCGAAGGGTAAAATTA-TCGAAAT
1 ACCCTCGAAGGGTAAAATTACT-GAAAT
* * * *
32303128 ACCTTTGAAGGGTAAAATTATTAAAAT
1 ACCCTCGAAGGGTAAAATTACTGAAAT
* * * * **
32303155 ACCCTTGAAAGGTAATATTGCCAAAAT
1 ACCCTCGAAGGGTAAAATTACTGAAAT
**
32303182 ACCCTCGAAGGGTAAAATTTTTGAAAT
1 ACCCTCGAAGGGTAAAATTACTGAAAT
* * *
32303209 A-CCTCTGAAAGATAAAATTACTAAAAT
1 ACCCTC-GAAGGGTAAAATTACTGAAAT
*
32303236 ACCCTCGAAGGGTAAAATTACTGAGAT
1 ACCCTCGAAGGGTAAAATTACTGAAAT
* * **
32303263 ACCC-CTTAAGGGTAAAATGACTGTTAT
1 ACCCTC-GAAGGGTAAAATTACTGAAAT
32303290 ACCCT
1 ACCCT
32303295 TAAGAGTGGA
Statistics
Matches: 154, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
26 9 0.06
27 140 0.91
28 5 0.03
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (27 bp):
ACCCTCGAAGGGTAAAATTACTGAAAT
Found at i:32303265 original size:81 final size:81
Alignment explanation
Indices: 32303075--32303280 Score: 245
Period size: 81 Copynumber: 2.6 Consensus size: 81
32303065 GATCGAATTA
* * * *
32303075 ACCC-CGAAAGGTAAAACTACCGAAACACCCTCGAAGGGTAAAATTATCGAAATACCTTTGAAGG
1 ACCCTCGAAAGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCTCTGAAAG
* *
32303139 GTAAAATTATTAAAAT
66 ATAAAATTACTAAAAT
* * * * * *
32303155 ACCCTTGAAAGGTAATATTGCCAAAATACCCTCGAAGGGTAAAATTTTTGAAATACCTCTGAAAG
1 ACCCTCGAAAGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCTCTGAAAG
32303220 ATAAAATTACTAAAAT
66 ATAAAATTACTAAAAT
* * * *
32303236 ACCCTCGAAGGGTAAAATTACTGAGATACCC-CTTAAGGGTAAAAT
1 ACCCTCGAAAGGTAAAATTACCGAAATACCCTC-GAAGGGTAAAAT
32303281 GACTGTTATA
Statistics
Matches: 104, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 5 0.05
81 99 0.95
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (81 bp):
ACCCTCGAAAGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCTCTGAAAG
ATAAAATTACTAAAAT
Found at i:32303487 original size:26 final size:26
Alignment explanation
Indices: 32303458--32303523 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
32303448 TTGCCACATA
*
32303458 TACTGTTACTGGCAGCCTTGCTGCGT
1 TACTATTACTGGCAGCCTTGCTGCGT
* *
32303484 TACTATTACTGGCAGCTTTGTTGCGT
1 TACTATTACTGGCAGCCTTGCTGCGT
* *
32303510 CATTATTACTGGCA
1 TACTATTACTGGCA
32303524 ACTCTGCTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
TACTATTACTGGCAGCCTTGCTGCGT
Found at i:32304208 original size:20 final size:20
Alignment explanation
Indices: 32304183--32304223 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
32304173 CCAAAATTAG
*
32304183 GAAACGAGTTTTATCAGCAA
1 GAAACGAGTTTTATCAACAA
32304203 GAAACGAGTTTTATCAACAA
1 GAAACGAGTTTTATCAACAA
32304223 G
1 G
32304224 TCTAAGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (20 bp):
GAAACGAGTTTTATCAACAA
Found at i:32309906 original size:17 final size:19
Alignment explanation
Indices: 32309874--32309923 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
32309864 GAACACACTC
*
32309874 TCTTCCTTCATCTTTT-ATTT
1 TCTT-CTTC-TCTTTTCAGTT
32309894 TCTTCTT-TCTTTTCAGTT
1 TCTTCTTCTCTTTTCAGTT
32309912 TCTTCTTCTCTT
1 TCTTCTTCTCTT
32309924 GTTGCCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 6 0.22
18 10 0.37
19 7 0.26
20 4 0.15
ACGTcount: A:0.06, C:0.26, G:0.02, T:0.66
Consensus pattern (19 bp):
TCTTCTTCTCTTTTCAGTT
Found at i:32310867 original size:27 final size:27
Alignment explanation
Indices: 32310798--32310997 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
32310788 TACGAATCGT
*
32310798 GGGTAAAATGACTGAAATACCCTC-AA
1 GGGTAAAATTACTGAAATACCCTCGAA
* *
32310824 AGGTAAAATTACTGAAATGCCCTCGAA
1 GGGTAAAATTACTGAAATACCCTCGAA
* *
32310851 GGGTAAAATTACCGAAATACCTTCGAA
1 GGGTAAAATTACTGAAATACCCTCGAA
* **
32310878 GGGTAAAATTATTGAAATACCCTTAAA
1 GGGTAAAATTACTGAAATACCCTCGAA
* *
32310905 AGGTAAAATTACTGAAATACCCTCAAA
1 GGGTAAAATTACTGAAATACCCTCGAA
** *
32310932 GAATAAAATTATTGAAATACCCTCGAA
1 GGGTAAAATTACTGAAATACCCTCGAA
*
32310959 GGGTAAAATTACTAAAATACCC-CTGAA
1 GGGTAAAATTACTGAAATACCCTC-GAA
32310986 GGGTAAAATTAC
1 GGGTAAAATTAC
32310998 CAAGATCCCT
Statistics
Matches: 148, Mismatches: 24, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
26 22 0.15
27 126 0.85
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (27 bp):
GGGTAAAATTACTGAAATACCCTCGAA
Found at i:32311020 original size:26 final size:27
Alignment explanation
Indices: 32310798--32311020 Score: 109
Period size: 27 Copynumber: 8.3 Consensus size: 27
32310788 TACGAATCGT
* **
32310798 GGGTAAAATGACTGAAATA-CCCTCAAA
1 GGGTAAAATTACCAAAATACCCCT-AAA
** * *
32310825 -GGTAAAATTACTGAAAT-GCCCTCGAA
1 GGGTAAAATTACCAAAATACCCCT-AAA
* * *
32310851 GGGTAAAATTACCGAAATA-CCTTCGAA
1 GGGTAAAATTACCAAAATACCCCT-AAA
*** *
32310878 GGGTAAAATTATTGAAATACCCTTAAA
1 GGGTAAAATTACCAAAATACCCCTAAA
* **
32310905 AGGTAAAATTACTGAAATA-CCCTCAAA
1 GGGTAAAATTACCAAAATACCCCT-AAA
** *** *
32310932 GAATAAAATTATTGAAATA-CCCTCGAA
1 GGGTAAAATTACCAAAATACCCCT-AAA
* *
32310959 GGGTAAAATTACTAAAATACCCCTGAA
1 GGGTAAAATTACCAAAATACCCCTAAA
* *
32310986 GGGTAAAATTACCAAGAT-CCCTTAAA
1 GGGTAAAATTACCAAAATACCCCTAAA
32311012 GGGTAAAAT
1 GGGTAAAAT
32311021 GACTGTTATA
Statistics
Matches: 167, Mismatches: 23, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
26 41 0.25
27 118 0.71
28 8 0.05
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (27 bp):
GGGTAAAATTACCAAAATACCCCTAAA
Found at i:32316230 original size:6 final size:7
Alignment explanation
Indices: 32316197--32316228 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
32316187 TATAATTTTC
*
32316197 AAAACTT
1 AAAAATT
32316204 AAAAATT
1 AAAAATT
32316211 AAAAATT
1 AAAAATT
32316218 AAAAATT
1 AAAAATT
32316225 AAAA
1 AAAA
32316229 TTTAGTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:32320434 original size:50 final size:50
Alignment explanation
Indices: 32320369--32320561 Score: 224
Period size: 51 Copynumber: 3.8 Consensus size: 50
32320359 ATTATTATCA
* ** * *
32320369 TTCGATACACGTAGTAGCCTTTACATAGTACTACACACGTGATCAAATTT
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAATCT
* *
32320419 TTCGGTTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCT
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA-TCT
* * * * * *
32320470 TCCGGTACACATAGTAGCCTGCACATGGTATTACACATGTGACCATTATCT
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AATCT
* * *
32320521 ATCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTG
32320562 TTTATAGGCA
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
50 42 0.36
51 75 0.64
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAATCT
Found at i:32323075 original size:16 final size:16
Alignment explanation
Indices: 32323045--32323097 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
32323035 TATATGTAAA
**
32323045 AAAAATTTAAAAATAT
1 AAAAATTTATTAATAT
32323061 AAAAATTTATTAATATGT
1 AAAAATTTATTAATA--T
32323079 ATATAAATTTATTAATAT
1 A-A-AAATTTATTAATAT
32323097 A
1 A
32323098 TGTAATAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
16 13 0.42
18 4 0.13
19 1 0.03
20 13 0.42
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
AAAAATTTATTAATAT
Found at i:32323101 original size:22 final size:20
Alignment explanation
Indices: 32323058--32323096 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
32323048 AATTTAAAAA
*
32323058 TATAAAAATTTATTAATATG
1 TATATAAATTTATTAATATG
32323078 TATATAAATTTATTAATAT
1 TATATAAATTTATTAATAT
32323097 ATGTAATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATATAAATTTATTAATATG
Found at i:32323218 original size:19 final size:19
Alignment explanation
Indices: 32323194--32323232 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32323184 AAATATTTTT
*
32323194 AGTAAATTATTTTCCAGAA
1 AGTAAATCATTTTCCAGAA
32323213 AGTAAATCATTTTCCAGAA
1 AGTAAATCATTTTCCAGAA
32323232 A
1 A
32323233 TCATTTTCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (19 bp):
AGTAAATCATTTTCCAGAA
Found at i:32323235 original size:14 final size:14
Alignment explanation
Indices: 32323216--32323253 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
32323206 TCCAGAAAGT
32323216 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
32323230 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
32323244 AAAACATTTT
1 AAATCATTTT
32323254 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:32327305 original size:6 final size:6
Alignment explanation
Indices: 32327294--32327405 Score: 206
Period size: 6 Copynumber: 18.3 Consensus size: 6
32327284 GAAGTTTAAG
32327294 AAATAA AAATAAA AAATAAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAAT-AA AAAT-AA AAATAA AAATAA AAATAA AAATAA AAATAA
32327344 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
32327392 AAATAA AAATAA AA
1 AAATAA AAATAA AA
32327406 GAAATAAAAT
Statistics
Matches: 105, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
6 92 0.88
7 13 0.12
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:32327308 original size:1 final size:1
Alignment explanation
Indices: 32327298--32327405 Score: 63
Period size: 1 Copynumber: 108.0 Consensus size: 1
32327288 TTTAAGAAAT
* * * * * * * * * *
32327298 AAAAATAAAAAATAAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * *
32327363 AATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32327406 GAAATAAAAT
Statistics
Matches: 73, Mismatches: 34, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 73 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (1 bp):
A
Found at i:32329858 original size:39 final size:40
Alignment explanation
Indices: 32329757--32330019 Score: 326
Period size: 39 Copynumber: 6.7 Consensus size: 40
32329747 TTGAATGATG
* *
32329757 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
32329796 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
32329837 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
32329876 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
32329915 TTCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32329954 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
32329994 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32330020 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 15, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
39 109 0.54
40 79 0.39
41 12 0.06
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32337286 original size:39 final size:40
Alignment explanation
Indices: 32337185--32337408 Score: 266
Period size: 40 Copynumber: 5.7 Consensus size: 40
32337175 TTGAATGATG
* *
32337185 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
32337224 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
32337265 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32337304 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
32337343 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
32337382 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32337409 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
39 75 0.46
40 76 0.46
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32337372 original size:79 final size:80
Alignment explanation
Indices: 32337185--32337408 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
32337175 TTGAATGATG
* * * *
32337185 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTATATCCGGGCTAAGACCCGAAGGCATT
*
32337249 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
32337265 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATA-TCCGGGCTAAGACCCGAAGGCAT
*
32337326 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * * * *
32337343 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
32337408 G
66 G
32337409 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 36 0.28
79 56 0.44
80 35 0.28
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:32337430 original size:79 final size:79
Alignment explanation
Indices: 32337185--32337441 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
32337175 TTGAATGATG
* * * * *
32337185 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
32337247 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
32337265 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
32337329 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
32337343 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
32337406 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
32337423 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
32337442 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 37 0.24
79 67 0.44
80 47 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:32346520 original size:29 final size:29
Alignment explanation
Indices: 32346468--32346536 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
32346458 GCCACAAAGC
*
32346468 CTCACATATATCAAATTTCTCCACTAGAG
1 CTCACATATAACAAATTTCTCCACTAGAG
* *
32346497 CTCACATATAACAAA-TTCTGCCACTGGGG
1 CTCACATATAACAAATTTCT-CCACTAGAG
32346526 CTCACATATAA
1 CTCACATATAA
32346537 TAGAAAAGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.11
29 32 0.89
ACGTcount: A:0.35, C:0.28, G:0.10, T:0.28
Consensus pattern (29 bp):
CTCACATATAACAAATTTCTCCACTAGAG
Found at i:32357475 original size:27 final size:26
Alignment explanation
Indices: 32357419--32357488 Score: 88
Period size: 27 Copynumber: 2.7 Consensus size: 26
32357409 CTGTACATGT
*
32357419 ATGCTCACACGAGCTGT-AAATCAGA
1 ATGCTCACACGAGCTGTGAAATAAGA
* *
32357444 ATGCTCACACGAACTGTGAAAATAAGC
1 ATGCTCACACGAGCTGTG-AAATAAGA
*
32357471 CTGCTCACACGAGCTGTG
1 ATGCTCACACGAGCTGTG
32357489 GTTCGGAACG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
25 16 0.42
27 22 0.58
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (26 bp):
ATGCTCACACGAGCTGTGAAATAAGA
Found at i:32366773 original size:50 final size:50
Alignment explanation
Indices: 32366719--32366814 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
32366709 ATTAATCAAG
* *
32366719 ATGCAAACTAAATAAACAAATGAATTACGTAATGCATAACATAATTTAAT
1 ATGCAAACTAAATAAACAAAGGAATTACATAATGCATAACATAATTTAAT
* * * * *
32366769 ATGCAAACTTAATTAACATAGGAGTTACATAATGCATGACATAATT
1 ATGCAAACTAAATAAACAAAGGAATTACATAATGCATAACATAATT
32366815 AAAACACAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.29
Consensus pattern (50 bp):
ATGCAAACTAAATAAACAAAGGAATTACATAATGCATAACATAATTTAAT
Found at i:32370080 original size:26 final size:26
Alignment explanation
Indices: 32370025--32370082 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
32370015 TATAACATTT
* * *
32370025 CTCACACGAGCTGTGAAATGAGTCTG
1 CTCACACGAGCAGTGAAATGAGCCTA
*
32370051 CTCACACGAGCAGTGAAATGGGCCTA
1 CTCACACGAGCAGTGAAATGAGCCTA
32370077 CTCACA
1 CTCACA
32370083 TGAGTTGTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.28, G:0.24, T:0.19
Consensus pattern (26 bp):
CTCACACGAGCAGTGAAATGAGCCTA
Found at i:32383247 original size:51 final size:50
Alignment explanation
Indices: 32383119--32383311 Score: 235
Period size: 51 Copynumber: 3.8 Consensus size: 50
32383109 ATTATTATCA
* * *
32383119 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAACT
1 TTCGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAACT
* *
32383168 TTCCGGTTCACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCT
1 TT-CGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAA-CT
* * * *
32383220 TTCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCT
1 TTCGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCA-AAACT
* * * *
32383271 ATCGATACACGTAGTAGCCTGCACTTAATACTACACACGTG
1 TTCGATACACATAGTAGCCTGCACATAGTACTACACACGTG
32383312 TTTATAAGCA
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
49 2 0.02
50 37 0.30
51 81 0.65
52 5 0.04
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TTCGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAACT
Found at i:32390520 original size:25 final size:25
Alignment explanation
Indices: 32390454--32390511 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
32390444 TCCTGTACAT
* *
32390454 GTATGCTCA-TACGAGCTGTGAATCA
1 GTATGCTCACT-CAAGCTGTAAATCA
32390479 GTATGCTCACTCAAGCTGTAAATCA
1 GTATGCTCACTCAAGCTGTAAATCA
*
32390504 GTGTGCTC
1 GTATGCTC
32390512 TCATAAGCTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
GTATGCTCACTCAAGCTGTAAATCA
Found at i:32395284 original size:29 final size:29
Alignment explanation
Indices: 32395247--32395305 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
32395237 TCCTTTCTCC
* *
32395247 TCCTCCTTGCTATTCTGTCTCTCTATTTT
1 TCCTACTTGCTATTCTGTCTATCTATTTT
32395276 TCCTACTTGCTATTCTGTCTATCTATTTT
1 TCCTACTTGCTATTCTGTCTATCTATTTT
32395305 T
1 T
32395306 TCTATTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.10, C:0.27, G:0.07, T:0.56
Consensus pattern (29 bp):
TCCTACTTGCTATTCTGTCTATCTATTTT
Found at i:32414303 original size:39 final size:39
Alignment explanation
Indices: 32414249--32414418 Score: 232
Period size: 39 Copynumber: 4.4 Consensus size: 39
32414239 GACGGCAAAA
32414249 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * * * * *
32414288 AAGTGTGATTAGGGGTACCGAAGTACAATAAGGACACAT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* * * *
32414327 AGGTGCGATCAGGGGTATCAAAGTACAATAGGGGCACGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
* *
32414366 AAGTGCGATCAGGGGTACTGAAGTACAACAGGGGCATGT
1 AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
32414405 AAGTGCGATCAGGG
1 AAGTGCGATCAGGG
32414419 TATAATTATA
Statistics
Matches: 111, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.32, C:0.16, G:0.35, T:0.17
Consensus pattern (39 bp):
AAGTGCGATCAGGGGTACCGAAGTACAACAGGGGCACGT
Found at i:32414389 original size:20 final size:20
Alignment explanation
Indices: 32414329--32414418 Score: 69
Period size: 19 Copynumber: 4.6 Consensus size: 20
32414319 GGACACATAG
* **
32414329 GTGCGATCAGGGGTATCAAA
1 GTGCGATCAGGGGCATGTAA
* * *
32414349 GTACAAT-AGGGGCACGTAA
1 GTGCGATCAGGGGCATGTAA
*
32414368 GTGCGATCAGGGGTACTG-AA
1 GTGCGATCAGGGGCA-TGTAA
* *
32414388 GTAC-AACAGGGGCATGTAA
1 GTGCGATCAGGGGCATGTAA
32414407 GTGCGATCAGGG
1 GTGCGATCAGGG
32414419 TATAATTATA
Statistics
Matches: 51, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
18 2 0.04
19 26 0.51
20 22 0.43
21 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.37, T:0.18
Consensus pattern (20 bp):
GTGCGATCAGGGGCATGTAA
Found at i:32421272 original size:20 final size:20
Alignment explanation
Indices: 32421249--32421310 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
32421239 GTGCTATCAA
*
32421249 GGGCATCAAAGTGCAAAAAG
1 GGGCATCAAAGTGCAAATAG
* **
32421269 GGGCATGATTGTGCAAATAG
1 GGGCATCAAAGTGCAAATAG
* *
32421289 GGGCACCAGAGTGCAAATAG
1 GGGCATCAAAGTGCAAATAG
32421309 GG
1 GG
32421311 ATAGCGAAGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.35, T:0.15
Consensus pattern (20 bp):
GGGCATCAAAGTGCAAATAG
Found at i:32421338 original size:20 final size:20
Alignment explanation
Indices: 32421324--32421364 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32421314 GCGAAGTGTG
32421324 AACAAGGGCACCGAAGTGCA
1 AACAAGGGCACCGAAGTGCA
**
32421344 AACTGGGGCACCGAAGTGCA
1 AACAAGGGCACCGAAGTGCA
32421364 A
1 A
32421365 TGTATAAGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.24, G:0.32, T:0.07
Consensus pattern (20 bp):
AACAAGGGCACCGAAGTGCA
Found at i:32426562 original size:251 final size:251
Alignment explanation
Indices: 32425664--32426666 Score: 1422
Period size: 250 Copynumber: 4.0 Consensus size: 251
32425654 TATTCGTTTG
* * *
32425664 TAAACTTGTAATTTTTTTTGAAAAGATTGAAGAATAAAACAAATTCATGGATTACATTAATATAC
1 TAAACTTGTAAATTTTTTCGAAAAGATTGAATAATAAAACAAATTCATGGATTACATTAATATAC
* * **
32425729 -TTTGTATGATTGTCCTCGTACGGTTTTTGCACGCAAAGAAAAATGGAAGCAAATGTTGGTCATT
66 ATTT-TATGATTTTCCTCGTACGGTTTTTGCACGCAAAGAAAAATGGAAGAAAATGTTACTCATT
* *
32425793 GGTTGTCTAAAATTTAAACTAATACTAAGCAGTATTACATGGCCGGATCGTAATACAGAAATACA
130 GGTTGTCTAACATTTAAACTAATACTAAGCAGTATTACATGGCCGGATCGTAATACAGAAAGACA
* * * * *
32425858 ACTTACATTACTCGATGAAACTTAACATGTCCTTAGTCTAATCGGAAATGAGCAAAC
195 ACTTATATTAGTAGACGAAACTTAACATGTCCTTAATCTAATCGGAAATGAGCAAAC
*
32425915 TAAACTTGT-AATTTTTTCGAAAAGATTGAATAATAAAACAAATTCATGGATTACATTAATATAT
1 TAAACTTGTAAATTTTTTCGAAAAGATTGAATAATAAAACAAATTCATGGATTACATTAATATAC
* * * * * *
32425979 ATTGTATGACTTTCCTTGTACGGTTTTTGCAGGAAAAGAAAAATGGAAGAAAATGTTGCTCATTG
66 ATTTTATGATTTTCCTCGTACGGTTTTTGCACGCAAAGAAAAATGGAAGAAAATGTTACTCATTG
* * * *
32426044 GTTGTCTAACGTTTAAACTAATACTAATC-GATATTACATGGCCAGATCGTAATACAGAAAAACA
131 GTTGTCTAACATTTAAACTAATACTAAGCAG-TATTACATGGCCGGATCGTAATACAGAAAGACA
* * *
32426108 ACTTATATTAGTAGATGAAACTTAACATGTCCTTAATCTAATCAGAAATGAGCAAAA
195 ACTTATATTAGTAGACGAAACTTAACATGTCCTTAATCTAATCGGAAATGAGCAAAC
* *
32426165 TAAACTTG-CAATTTTTTCAAAAAGATTGAATAATAAAACAAATTCATGGATTACATTAATATAC
1 TAAACTTGTAAATTTTTTCGAAAAGATTGAATAATAAAACAAATTCATGGATTACATTAATATAC
* * * * * * * *
32426229 TTTTTACGATTTTCCTCATACGGTTTTTGCACACAAAGGAAAATGGAAGCAAATGCTACTTATTG
66 ATTTTATGATTTTCCTCGTACGGTTTTTGCACGCAAAGAAAAATGGAAGAAAATGTTACTCATTG
* ** * *
32426294 GTTGTCTAACGTTTAAACTAATACTAAGTGGTATTACATGGCCGGATTGTAATATAGAAAGACAA
131 GTTGTCTAACATTTAAACTAATACTAAGCAGTATTACATGGCCGGATCGTAATACAGAAAGACAA
* * *
32426359 CTTATATTAGTAGACGAAACTTATCATGTCCTTAACCTAATTGGAAATGAGCAAAC
196 CTTATATTAGTAGACGAAACTTAACATGTCCTTAATCTAATCGGAAATGAGCAAAC
*
32426415 TAAACTTGTAAATTTTTTTGAAAAGATTGAATAATAAAGA-AAATTCATGGATTACATTAATATA
1 TAAACTTGTAAATTTTTTCGAAAAGATTGAATAATAAA-ACAAATTCATGGATTACATTAATATA
*
32426479 CATTTTATGATTTTCCTTGTACGGTTTTTGCACGCAAAGAAAAATGGAAGAAAATGTTACTCATT
65 CATTTTATGATTTTCCTCGTACGGTTTTTGCACGCAAAGAAAAATGGAAGAAAATGTTACTCATT
* * * *
32426544 GGTTGTCTAACATTTAAACTAATACTAAACAGTATTAAATGGCTGGATCGTAATACAAAAAGACA
130 GGTTGTCTAACATTTAAACTAATACTAAGCAGTATTACATGGCCGGATCGTAATACAGAAAGACA
* * * * * *
32426609 ACTAATATTAGTAGTCGAAACTAAACATGACTTTAGTCTAATCGGAAATGAGCAAAC
195 ACTTATATTAGTAGACGAAACTTAACATGTCCTTAATCTAATCGGAAATGAGCAAAC
32426666 T
1 T
32426667 GATTGAAAGT
Statistics
Matches: 665, Mismatches: 81, Indels: 12
0.88 0.11 0.02
Matches are distributed among these distances:
249 1 0.00
250 440 0.66
251 223 0.34
252 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.32
Consensus pattern (251 bp):
TAAACTTGTAAATTTTTTCGAAAAGATTGAATAATAAAACAAATTCATGGATTACATTAATATAC
ATTTTATGATTTTCCTCGTACGGTTTTTGCACGCAAAGAAAAATGGAAGAAAATGTTACTCATTG
GTTGTCTAACATTTAAACTAATACTAAGCAGTATTACATGGCCGGATCGTAATACAGAAAGACAA
CTTATATTAGTAGACGAAACTTAACATGTCCTTAATCTAATCGGAAATGAGCAAAC
Found at i:32442317 original size:24 final size:25
Alignment explanation
Indices: 32442255--32442317 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
32442245 GGACTCACCA
*
32442255 CAGCTCCTATGAGCTTACCGATATT
1 CAGCTCGTATGAGCTTACCGATATT
* * *
32442280 CAGCTCGAAGGAGCTTACCG-TTTAT
1 CAGCTCGTATGAGCTTACCGATAT-T
32442305 CA-CTCGTATGAGC
1 CAGCTCGTATGAGC
32442318 CTACATGTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
24 11 0.35
25 20 0.65
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.29
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATATT
Found at i:32445144 original size:40 final size:40
Alignment explanation
Indices: 32445061--32445246 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
32445051 TTGAATGATG
* * * * *
32445061 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
32445101 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
32445141 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32445181 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32445222 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32445247 AACGAGGAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32445264 original size:80 final size:79
Alignment explanation
Indices: 32445114--32445279 Score: 210
Period size: 80 Copynumber: 2.1 Consensus size: 79
32445104 GGACTAAGAT
* ** *
32445114 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAGGCATTTGAACGAGTGACTA
*
32445179 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
* *
32445194 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCAAAGGCATTTGAACGAGTGA-C
* *
32445257 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
32445273 CCGAAGG
1 CCGAAGG
32445280 TACGTGATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
79 15 0.20
80 58 0.77
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCAAAGGCATTTGAACGAGTGACTA
AATCCGGTTAAATC
Found at i:32453077 original size:40 final size:40
Alignment explanation
Indices: 32452994--32453179 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
32452984 TTGAATGATG
* * * * *
32452994 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
32453034 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32453074 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32453114 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32453155 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32453180 AACGAGGAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32453197 original size:80 final size:79
Alignment explanation
Indices: 32452994--32453212 Score: 221
Period size: 80 Copynumber: 2.7 Consensus size: 79
32452984 TTGAATGATG
* ** * * * *
32452994 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCAT
32453057 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* ** * *
32453074 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
32453139 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* * *
32453155 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
32453213 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
79 16 0.14
80 92 0.78
81 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:32457013 original size:20 final size:22
Alignment explanation
Indices: 32456970--32457021 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 22
32456960 TTCCATGTGG
32456970 TATCGATACCACTTAAAGAAAA
1 TATCGATACCACTTAAAGAAAA
* *
32456992 TATTGATACC-CTT-AAGACAA
1 TATCGATACCACTTAAAGAAAA
32457012 TATCGATACC
1 TATCGATACC
32457022 TACATAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 15 0.56
21 3 0.11
22 9 0.33
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.27
Consensus pattern (22 bp):
TATCGATACCACTTAAAGAAAA
Done.