Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 109 of 214
Found at i:32752360 original size:26 final size:26
Alignment explanation
Indices: 32752280--32752360 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
32752270 TTCGATCACG
32752280 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
32752306 CGTGTA-T-CGGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
32752331 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
32752357 TGTG
1 TGTG
32752361 AACCAGTATC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:32755557 original size:75 final size:74
Alignment explanation
Indices: 32755472--32755695 Score: 342
Period size: 75 Copynumber: 3.0 Consensus size: 74
32755462 ATGAAAATTA
*
32755472 ATATTCTTTTGGAAAGAATATAA-TTCATTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAA
1 ATATTCTTTTGGAAAGAATATAATTTC-TTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAG
32755536 GGAATAATCAT
65 GGAATAATC-T
*
32755547 ATATTCTTTTGGAAAGAATATAATTTCTTTTTCTAACTATTCATTTGTCTTCTCTATTAATAAGG
1 ATATTCTTTTGGAAAGAATATAATTTCTTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAGG
32755612 GAATAATTCT
66 GAATAA-TCT
* * * * *
32755622 ATATTTTTTTGAAAAGAATATAATTTTTTTTTTCTAAATTTCCATTTGTCTTCTCTATTAATAAG
1 ATATTCTTTTGGAAAGAATATAA-TTTCTTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAG
32755687 GGAATAATC
65 GGAATAATC
32755696 CTGTTTTTCC
Statistics
Matches: 138, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
75 89 0.64
76 49 0.36
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.48
Consensus pattern (74 bp):
ATATTCTTTTGGAAAGAATATAATTTCTTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAGG
GAATAATCT
Found at i:32756355 original size:20 final size:20
Alignment explanation
Indices: 32756330--32756367 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32756320 GATAAAAAAT
32756330 TATATT-TTTTTATGAATAAG
1 TATATTATTTTTAT-AATAAG
32756350 TATATTATTTTTATAATA
1 TATATTATTTTTATAATA
32756368 TATAGCATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
TATATTATTTTTATAATAAG
Found at i:32762018 original size:22 final size:25
Alignment explanation
Indices: 32761992--32762046 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
32761982 TTTATAAATT
32761992 TAATTTAAAAG-ATA-TAAT-ACAA
1 TAATTTAAAAGTATATTAATAACAA
*
32762014 TAATTT-CAAGTATATTTAATAACAA
1 TAATTTAAAAGTATA-TTAATAACAA
32762039 TAATTTAA
1 TAATTTAA
32762047 TCATAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 3 0.12
22 9 0.35
24 4 0.15
25 10 0.38
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (25 bp):
TAATTTAAAAGTATATTAATAACAA
Found at i:32786034 original size:67 final size:67
Alignment explanation
Indices: 32785828--32786014 Score: 286
Period size: 67 Copynumber: 2.8 Consensus size: 67
32785818 ATGGGCTGTA
* * *
32785828 ATGGGGTATAATGTATAAGACCATAGCTCGGCTATGGCAACATAGAGAGTTCGCCAAGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGGCTATGACAACATAGAGAGTCCGCCAAGACATTAA
32785893 AC
66 AC
* *
32785895 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTCCACCAAGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGGCTATGACAACATAGAGAGTCCGCCAAGACATTAA
32785960 AC
66 AC
** *
32785962 ATGGGGTAGGATGTGTAAGACCATAGCTCGGCTATGACATCATATG-GAGTCCG
1 ATGGGGTATAATGTGTAAGACCATAGCTCGGCTATGACAACATA-GAGAGTCCG
32786015 TTGAGGCAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
67 108 0.99
68 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (67 bp):
ATGGGGTATAATGTGTAAGACCATAGCTCGGCTATGACAACATAGAGAGTCCGCCAAGACATTAA
AC
Found at i:32822300 original size:24 final size:24
Alignment explanation
Indices: 32822273--32822325 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
32822263 TTTAAGCTCC
* * * *
32822273 ATGTTAGTGGTTACTTCTACTTTT
1 ATGTTAATGGCTACATCTACTGTT
*
32822297 ATGTGAATGGCTACATCTACTGTT
1 ATGTTAATGGCTACATCTACTGTT
32822321 ATGTT
1 ATGTT
32822326 TGATTCTATG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.47
Consensus pattern (24 bp):
ATGTTAATGGCTACATCTACTGTT
Found at i:32829912 original size:26 final size:24
Alignment explanation
Indices: 32829872--32829919 Score: 78
Period size: 26 Copynumber: 1.9 Consensus size: 24
32829862 AAAATCATAA
32829872 AAAATTTTCTAGGGTAAAATAGCC
1 AAAATTTTCTAGGGTAAAATAGCC
32829896 AAAATTTTGCTAGGGGTAAAATAG
1 AAAATTTT-CTA-GGGTAAAATAG
32829920 GGATGAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 8 0.36
25 3 0.14
26 11 0.50
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAATTTTCTAGGGTAAAATAGCC
Found at i:32840640 original size:25 final size:24
Alignment explanation
Indices: 32840612--32840975 Score: 273
Period size: 25 Copynumber: 15.4 Consensus size: 24
32840602 GGAGTTTAGC
*
32840612 GTGCTCTCTGATTATTAGCACATTA
1 GTGCTCTCTGA-TATTAGCACGTTA
32840637 GTGCTCTCTGATTATTAGCACGTTA
1 GTGCTCTCTGA-TATTAGCACGTTA
* *
32840662 GTGCTCTCT-AT-TTAGCTCATCT-
1 GTGCTCTCTGATATTAGCACGT-TA
* *
32840684 GTGGTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACGTTA
*
32840709 GTGCTCTCT-AT-TTAGCACATCT-
1 GTGCTCTCTGATATTAGCACGT-TA
*
32840731 GTGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACGTTA
*
32840756 GTGCTCTCTG-T-TTAGCACATCT-
1 GTGCTCTCTGATATTAGCACGT-TA
* * *
32840778 TTTCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACGTTA
* *
32840803 ATGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACGTTA
* *
32840828 ATGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACGTTA
*
32840853 GTGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACGTTA
32840878 GTGCTCTCT-A-ATT---AC--TA
1 GTGCTCTCTGATATTAGCACGTTA
* *
32840895 GCTCGCTCTCTGATCACTAGCACATTA
1 G-T-GCTCTCTGAT-ATTAGCACGTTA
* *
32840922 GTGCTCTCT-AT-TTAGCACATTT
1 GTGCTCTCTGATATTAGCACGTTA
*
32840944 GTGCTCTCTG-TA-TAGCACTTTA
1 GTGCTCTCTGATATTAGCACGTTA
32840966 GTGCTCTCTG
1 GTGCTCTCTG
32840976 TTTAATAGTG
Statistics
Matches: 285, Mismatches: 27, Indels: 57
0.77 0.07 0.15
Matches are distributed among these distances:
17 2 0.01
18 1 0.00
19 9 0.03
20 1 0.00
22 89 0.31
23 8 0.03
24 7 0.02
25 164 0.58
26 1 0.00
27 3 0.01
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (24 bp):
GTGCTCTCTGATATTAGCACGTTA
Found at i:32840692 original size:47 final size:47
Alignment explanation
Indices: 32840612--32840886 Score: 329
Period size: 47 Copynumber: 5.7 Consensus size: 47
32840602 GGAGTTTAGC
*
32840612 GTGCTCTCTGATTATTAGCACAT-TAGTGCTCTCTGAT-TATTAGCACGTTA
1 GTGCTCTCT-A-T-TTAGCACATCT-GTGCTCTCTGATAT-TTAGCACGTCA
* *
32840662 GTGCTCTCTATTTAGCTCATCTGTGGTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTATTTAGCACATCTGTGCTCTCTGATATTTAGCACGTCA
32840709 GTGCTCTCTATTTAGCACATCTGTGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTATTTAGCACATCTGTGCTCTCTGATATTTAGCACGTCA
* * *
32840756 GTGCTCTCTGTTTAGCACATCTTTTCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTATTTAGCACATCTGTGCTCTCTGATATTTAGCACGTCA
* * **
32840803 ATGCTCTCTGATATTTAGCACGTCAATGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTC---TATTTAGCACATCTGTGCTCTCTGATATTTAGCACGTCA
* *
32840853 GTGCTCTCTGATATTTAGCACGTCAGTGCTCTCT
1 GTGCTCTC---TATTTAGCACATCTGTGCTCTCT
32840887 AATTACTAGC
Statistics
Matches: 204, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
47 125 0.61
48 3 0.01
49 1 0.00
50 75 0.37
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.39
Consensus pattern (47 bp):
GTGCTCTCTATTTAGCACATCTGTGCTCTCTGATATTTAGCACGTCA
Found at i:32845649 original size:143 final size:141
Alignment explanation
Indices: 32845470--32845832 Score: 600
Period size: 143 Copynumber: 2.6 Consensus size: 141
32845460 TTAGGATTCT
* * *
32845470 ATGTGATGGATGTGAACATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
32845535 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
32845600 CCTAATGGCCG
131 CCTAATGGCCG
*
32845611 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAATG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32845676 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
32845741 GGCCTAATGGCCG
129 GGCCTAATGGCCG
* * * * * * *
32845754 ATGTGATGAATGTGAAAATGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
32845819 TGTATAAATGTGAT
66 TGTATATATGTGAT
32845833 TAGTCCCGAA
Statistics
Matches: 207, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 68 0.33
143 139 0.67
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCG
Found at i:32845847 original size:47 final size:47
Alignment explanation
Indices: 32845470--32845832 Score: 593
Period size: 47 Copynumber: 7.7 Consensus size: 47
32845460 TTAGGATTCT
* *
32845470 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
32845517 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32845564 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32845611 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
32845660 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32845707 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
32845754 ATGTGATGAATGTGAAAATGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
32845801 ACGTGATGGATGTGAAAGTGTATAAATGTGAT
1 ATGTGATGAATGTGAAAGTGTATATATGTGAT
32845833 TAGTCCCGAA
Statistics
Matches: 300, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 252 0.84
49 47 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:32846010 original size:37 final size:37
Alignment explanation
Indices: 32845955--32846032 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
32845945 CGAGCTCTAG
* * *
32845955 AGACCCGATGACTACGTGTGGGGATTTTGTCCGGGTA
1 AGACCCGATAACTACGTGTGGAGATTATGTCCGGGTA
*
32845992 AGACCCGATAACTTCGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATAACTACGTGTGGAGATTATGTCCGGGTA
32846029 AGAC
1 AGAC
32846033 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
AGACCCGATAACTACGTGTGGAGATTATGTCCGGGTA
Found at i:32847480 original size:40 final size:40
Alignment explanation
Indices: 32847237--32847468 Score: 358
Period size: 40 Copynumber: 5.8 Consensus size: 40
32847227 GAGAATTGAG
32847237 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
32847277 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
32847317 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * *
32847357 AGTGAGGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
32847397 AGAGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
32847437 GGTG-TAATATCCGGGCTAAGTCCCGAAGAGCA
1 AGTGAT-ATATCCGGGCTAAGTCCCGAAGAGCA
32847469 ATCATGCTGG
Statistics
Matches: 172, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 171 0.99
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:32851499 original size:143 final size:141
Alignment explanation
Indices: 32851320--32851682 Score: 591
Period size: 143 Copynumber: 2.6 Consensus size: 141
32851310 TTAGGATTCT
* * *
32851320 ATGTGATGGATGTGAACATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
32851385 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGG
32851450 CCTAATGGCCG
131 CCTAATGGCCG
*
32851461 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAATG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32851526 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAA
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAA
32851591 GGCCTAATGGCCG
129 GGCCTAATGGCCG
* * * * * * *
32851604 ATGTGATGAATGTGAAAATGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
32851669 TGTATAAATGTGAT
66 TGTATATATGTGAT
32851683 TAGTCCCGAA
Statistics
Matches: 206, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 68 0.33
143 138 0.67
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGG
CCTAATGGCCG
Found at i:32851697 original size:47 final size:47
Alignment explanation
Indices: 32851320--32851682 Score: 584
Period size: 47 Copynumber: 7.7 Consensus size: 47
32851310 TTAGGATTCT
* *
32851320 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
32851367 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32851414 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32851461 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
32851510 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
32851557 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
32851604 ATGTGATGAATGTGAAAATGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
32851651 ACGTGATGGATGTGAAAGTGTATAAATGTGAT
1 ATGTGATGAATGTGAAAGTGTATATATGTGAT
32851683 TAGTCCCGAA
Statistics
Matches: 300, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 252 0.84
49 47 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:32851860 original size:37 final size:37
Alignment explanation
Indices: 32851804--32851882 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32851794 CCGAGCTCTA
* * *
32851804 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
32851841 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32851878 AAGAC
1 AAGAC
32851883 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32870312 original size:15 final size:15
Alignment explanation
Indices: 32870292--32870334 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32870282 ATTATAATAA
*
32870292 AAATAATAAGAACA-T
1 AAATAA-AAGAAAATT
32870307 AAATAAAAGAAAATT
1 AAATAAAAGAAAATT
*
32870322 AAATAAACGAAAA
1 AAATAAAAGAAAA
32870335 GAAAGAAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.72, C:0.05, G:0.07, T:0.16
Consensus pattern (15 bp):
AAATAAAAGAAAATT
Found at i:32871179 original size:18 final size:18
Alignment explanation
Indices: 32871143--32871181 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
32871133 CACACATCTC
*
32871143 TCTCTCTTTCACTCACTT
1 TCTCTCTTCCACTCACTT
* *
32871161 TCTCTCTTCCATTCCCTT
1 TCTCTCTTCCACTCACTT
32871179 TCT
1 TCT
32871182 TATTTTCCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.41, G:0.00, T:0.51
Consensus pattern (18 bp):
TCTCTCTTCCACTCACTT
Found at i:32895295 original size:23 final size:23
Alignment explanation
Indices: 32895259--32895303 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
32895249 TGAGCATCGG
* *
32895259 TGTAATATCTCGAAAATTACTAC
1 TGTAATACCACGAAAATTACTAC
32895282 TGTAATACCACGAAAATTACTA
1 TGTAATACCACGAAAATTACTA
32895304 TAATAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (23 bp):
TGTAATACCACGAAAATTACTAC
Found at i:32908023 original size:51 final size:50
Alignment explanation
Indices: 32907893--32908033 Score: 176
Period size: 50 Copynumber: 2.8 Consensus size: 50
32907883 AAAGTGATGG
* *
32907893 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAATGATAGA
* * * *
32907943 TCGCATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGG-ATAGTTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAT-G-ATAGA
* * *
32907994 TCACGTATGTAGTACTATGTGTAGGCTACTATGTGAACCG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCG
32908034 AAAATCATTG
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
49 2 0.03
50 39 0.50
51 37 0.47
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAATGATAGA
Found at i:32908045 original size:51 final size:50
Alignment explanation
Indices: 32907893--32908045 Score: 164
Period size: 51 Copynumber: 3.0 Consensus size: 50
32907883 AAAGTGATGG
* * * *
32907893 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCG-GAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAAAT-ATTGA
* * * * *
32907943 TCGCATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACC-GAAAATATTGA
* * *
32907994 TCACGTATGTAGTACTATGTGTAGGCTACTATGTGAACCGAAAATCATTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAAAT-ATTGA
32908045 T
1 T
32908046 TAGTACGATG
Statistics
Matches: 84, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
50 40 0.48
51 42 0.50
52 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAAATATTGA
Found at i:32926777 original size:51 final size:51
Alignment explanation
Indices: 32926701--32926977 Score: 437
Period size: 51 Copynumber: 5.3 Consensus size: 51
32926691 ACTTCTAATC
*
32926701 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
32926752 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGTAACAAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATC---T--G-ATC-AGTGACA
*
32926810 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTTTCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
32926861 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* * *
32926912 AGTAACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGGGACC
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
32926963 AGTGACAAGTGATAA
1 AGTGACAAGTGATAA
32926978 ATATGATCCG
Statistics
Matches: 210, Mismatches: 9, Indels: 14
0.90 0.04 0.06
Matches are distributed among these distances:
51 158 0.75
52 2 0.01
53 1 0.00
54 1 0.00
55 1 0.00
57 2 0.01
58 45 0.21
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:32926885 original size:109 final size:102
Alignment explanation
Indices: 32926701--32926977 Score: 437
Period size: 109 Copynumber: 2.6 Consensus size: 102
32926691 ACTTCTAATC
*
32926701 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGTGACAAGTGACAAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGATA
32926766 AGTGGTAGCTTTAGCTACACTTATCTAATCAGTAACAAGTGACA
66 AGTGGTAGCTTTAGCTACACTTATC---T--G-AAC-AGTGACA
*
32926810 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTTTCTGATCAGTGACAAGTGACAAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGATA
*
32926875 AGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
66 AGTGGTAGCTTTAGCTACACTTATCTGAACAGTGACA
* * *
32926912 AGTAACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGGGACCAGTGACAAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGATA
32926977 A
66 A
32926978 ATATGATCCG
Statistics
Matches: 161, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
102 69 0.43
103 2 0.01
104 1 0.01
106 1 0.01
109 88 0.55
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (102 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGATA
AGTGGTAGCTTTAGCTACACTTATCTGAACAGTGACA
Found at i:32943583 original size:40 final size:40
Alignment explanation
Indices: 32943500--32943722 Score: 204
Period size: 40 Copynumber: 5.6 Consensus size: 40
32943490 TTGAATGCTG
* * * * *
32943500 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
32943540 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* * **
32943580 TCCGGGTTAAGTCCCGAAGACATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
32943620 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
32943660 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
32943699 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32943723 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
39 34 0.22
40 112 0.71
41 10 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:32943637 original size:80 final size:79
Alignment explanation
Indices: 32943500--32943724 Score: 229
Period size: 80 Copynumber: 2.8 Consensus size: 79
32943490 TTGAATGCTG
* * * * * * * * *
32943500 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGACATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
32943564 TGTGCGAGA-TACTAAA
64 TGTGCGA-ATTACTAAA
** *
32943580 TCCGGGTTAAGTCCCGAAGACATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGACATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
**
32943645 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * * *
32943660 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGACATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
32943725 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 37 0.31
80 80 0.66
81 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGACATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:32943721 original size:79 final size:80
Alignment explanation
Indices: 32943576--32943722 Score: 224
Period size: 79 Copynumber: 1.9 Consensus size: 80
32943566 TGCGAGATAC
** *
32943576 TAAATCCGGGTTAAGTCCCGAAGACATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGACATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGC
32943641 ATTCGTGCGAATTGT
66 ATTCGTGCGAATTGT
* * * *
32943656 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGACATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGC
32943720 ATT
66 ATT
32943723 TGAACGAGGA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
79 34 0.57
80 26 0.43
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGACATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGC
ATTCGTGCGAATTGT
Found at i:32943742 original size:79 final size:80
Alignment explanation
Indices: 32943575--32943757 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
32943565 GTGCGAGATA
* ** *
32943575 CTAAATCCGGGTTAAGTCCCGAAGACATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
32943640 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
32943655 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
32943719 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
32943734 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
32943758 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.53
80 26 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:32950684 original size:20 final size:19
Alignment explanation
Indices: 32950659--32950696 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
32950649 TAAATTATAC
32950659 TTTAAAATAATATTGATAAA
1 TTTAAAA-AATATTGATAAA
*
32950679 TTTAAAACATATTGATAA
1 TTTAAAAAATATTGATAA
32950697 TAAAATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (19 bp):
TTTAAAAAATATTGATAAA
Found at i:32951059 original size:28 final size:28
Alignment explanation
Indices: 32951002--32951059 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
32950992 TACAAACGAA
* *
32951002 AATAATAATTTATTACATTTTAAACTAT
1 AATAATAATTTATAACATTTTAAACAAT
32951030 AATAATAAATTTA-AACATTTTTAAA-AAT
1 AATAAT-AATTTATAACA-TTTTAAACAAT
32951058 AA
1 AA
32951060 ATATTACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.41
Consensus pattern (28 bp):
AATAATAATTTATAACATTTTAAACAAT
Found at i:32951062 original size:29 final size:27
Alignment explanation
Indices: 32951001--32951062 Score: 63
Period size: 29 Copynumber: 2.2 Consensus size: 27
32950991 ATACAAACGA
* *
32951001 AAATAATAATTTATTACATTTTAAACT
1 AAATAATAATTTATAACATTTTAAAAT
32951028 ATAATAATAAATTTA-AACATTTTTAAAAAT
1 A-AATAAT-AATTTATAACA-TTTT-AAAAT
32951058 AAATA
1 AAATA
32951063 TTACAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
27 1 0.03
28 9 0.31
29 14 0.48
30 5 0.17
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (27 bp):
AAATAATAATTTATAACATTTTAAAAT
Found at i:32952108 original size:20 final size:20
Alignment explanation
Indices: 32952072--32952111 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32952062 TAAAATTTTA
*
32952072 TATTTCCTTTTTGTTTTTCT
1 TATTTCCTTTTTATTTTTCT
32952092 TATTT-CTTTTTCATTTTTCT
1 TATTTCCTTTTT-ATTTTTCT
32952112 ACCGTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.07, C:0.15, G:0.03, T:0.75
Consensus pattern (20 bp):
TATTTCCTTTTTATTTTTCT
Found at i:32957800 original size:16 final size:17
Alignment explanation
Indices: 32957781--32957814 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
32957771 ATTAGAAAGA
32957781 AATATAAAAAAAT-TTT
1 AATATAAAAAAATATTT
*
32957797 AATATTAAAAAATATTT
1 AATATAAAAAAATATTT
32957814 A
1 A
32957815 TTCAACAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATATAAAAAAATATTT
Found at i:32960866 original size:28 final size:28
Alignment explanation
Indices: 32960803--32960868 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
32960793 TTCTATCTTT
*
32960803 CAAGAATTGGTTGAAGCCGTGGGTCAAA
1 CAAGAATTGGTTGAAGCAGTGGGTCAAA
* *
32960831 CAATAATTGGTTGAAGTAGTGGGTCAAA
1 CAAGAATTGGTTGAAGCAGTGGGTCAAA
*
32960859 CAGGAATTGG
1 CAAGAATTGG
32960869 AATGTGAAGC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.33, C:0.11, G:0.32, T:0.24
Consensus pattern (28 bp):
CAAGAATTGGTTGAAGCAGTGGGTCAAA
Found at i:32966389 original size:14 final size:15
Alignment explanation
Indices: 32966360--32966393 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
32966350 TTTTCTACAT
*
32966360 AATTTACATTAACAA
1 AATTTACATCAACAA
32966375 AATTTAC-TCAACAA
1 AATTTACATCAACAA
32966389 AATTT
1 AATTT
32966394 TTAAGATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (15 bp):
AATTTACATCAACAA
Found at i:32966607 original size:18 final size:18
Alignment explanation
Indices: 32966586--32966622 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32966576 TTGGTTTTCG
* *
32966586 AATTCGAATAACTTGAAT
1 AATTCAAATAAATTGAAT
32966604 AATTCAAATAAATTGAAT
1 AATTCAAATAAATTGAAT
32966622 A
1 A
32966623 TCAAACTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.32
Consensus pattern (18 bp):
AATTCAAATAAATTGAAT
Found at i:32975649 original size:15 final size:16
Alignment explanation
Indices: 32975629--32975669 Score: 59
Period size: 14 Copynumber: 2.6 Consensus size: 16
32975619 TTAGATCCTT
32975629 TCAAAAAAAATC-AAA
1 TCAAAAAAAATCAAAA
32975644 TC-AAAAAAATCAAAA
1 TCAAAAAAAATCAAAA
32975659 TCAAAATAAAA
1 TCAAAA-AAAA
32975670 AATGAGAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.39
15 7 0.30
16 3 0.13
17 4 0.17
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (16 bp):
TCAAAAAAAATCAAAA
Found at i:32975743 original size:22 final size:23
Alignment explanation
Indices: 32975661--32975752 Score: 64
Period size: 21 Copynumber: 4.0 Consensus size: 23
32975651 AATCAAAATC
*
32975661 AAAATAAAAAATGAGAGAAAAAGA
1 AAAATAAAAAATGACA-AAAAAGA
* * *
32975685 AAGAAGAAAAGAAAGA-AAAAAGGA
1 AA-AATAAAA-AATGACAAAAAAGA
* * **
32975709 AAAAT-ATAGATGA-AAAAAATC
1 AAAATAAAAAATGACAAAAAAGA
32975730 AAAATAAAAAATGACAAAAAAGA
1 AAAATAAAAAATGACAAAAAAGA
32975753 GTAAAGGAAA
Statistics
Matches: 50, Mismatches: 14, Indels: 9
0.68 0.19 0.12
Matches are distributed among these distances:
21 13 0.26
22 8 0.16
23 8 0.16
24 10 0.20
25 7 0.14
26 4 0.08
ACGTcount: A:0.74, C:0.02, G:0.15, T:0.09
Consensus pattern (23 bp):
AAAATAAAAAATGACAAAAAAGA
Found at i:32976630 original size:14 final size:13
Alignment explanation
Indices: 32976607--32976650 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 13
32976597 TGAGTCAGAA
*
32976607 AAAATAAAAAAATG
1 AAAATGAAAAAA-G
32976621 AAAATGAAAAAAG
1 AAAATGAAAAAAG
32976634 AAAAATGAAAAAAG
1 -AAAATGAAAAAAG
32976648 AAA
1 AAA
32976651 TGGAGAGGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 4 0.14
14 24 0.86
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (13 bp):
AAAATGAAAAAAG
Found at i:32978296 original size:196 final size:197
Alignment explanation
Indices: 32977864--32978563 Score: 833
Period size: 196 Copynumber: 3.6 Consensus size: 197
32977854 GTGAAATCAA
* * *
32977864 GAATCTTATCTCCCCAGGCGATGCCGTGGAAC-AATTAAAGCCACATTGGTGAATCTTGCTTCCC
1 GAATCTTACCT-CCCAGGCGATGCAGTGGAACAAATTAAAGCCACATCGGTGAATCTTGCTTCCC
* * * *
32977928 CGACATTGCAGTTAAAAAGGTTAAAGCCACAGCGGC-AATCCTACTTCTCTGGCGGTGCAGTGGA
65 CGACATTGCAGTT-AAAAGATTAAAGCTACAGCAGCGAATCTTAC-TCTCTGGCGGTGCAGTGGA
* * * * * *
32977992 GCAGATTGAAGCCACATCGATGAATCTTGCCTCCCCAACATTGCAGCTAAAAGATTAAATCTACA
128 GCAGATTAAAGCCACATCGGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAGATTAAAGCTAAA
32978057 GCAGC
193 GCAGC
* * * * **
32978062 GAATCTTACCT-CTA-GCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCCTCCTT
1 GAATCTTACCTCCCAGGCGATGCAGTGGAACAAATTAAAGCCACATCGGTGAATCTTGCTTCCCC
32978125 GACATTGCAGTTAAAAGATTAAAGCTACAGCAGCGAATCTTAC-CTCTGGCGGTGCAGTGGAGCA
66 GACATTGCAGTTAAAAGATTAAAGCTACAGCAGCGAATCTTACTCTCTGGCGGTGCAGTGGAGCA
* *
32978189 GATTAAAGCCACATCGGTGAATCTTGCCTCCCTGACATTGCAGTTAAAAGATTAAAGCTAGAGCA
131 GATTAAAGCCACATCGGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAGATTAAAGCTAAAGCA
32978254 GC
196 GC
* *
32978256 GAATCTTACCTCCCAGGC-AGTGCAATGGAACAAATTAAAGCCACAACGGTGAATCTTGCTTCCC
1 GAATCTTACCTCCCAGGCGA-TGCAGTGGAACAAATTAAAGCCACATCGGTGAATCTTGCTTCCC
* * *
32978320 CGACATTGCAGTTAAAAGATTAAAGCTACAGCAGCGAATCTTACTTCCCTGGTGATGACA-TGGA
65 CGACATTGCAGTTAAAAGATTAAAGCTACAGCAGCGAATCTTAC-TCTCTGGCGGTG-CAGTGGA
** * * * *
32978384 ATAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAAAGATGAAAGCTAC
128 GCAGATTAAAGCCACATCGGTGAATCTTGCCTCCCCGACATTGCAGTT-AAAAGATTAAAGCTA-
**
32978449 AAG-AAT
191 AAGCAGC
* * * * * *
32978455 GAATCTTACTTCCCAGGCGATGTAGTGGAACAGATTAAAGCCACAAT-AGCGAATCATGCTTCCC
1 GAATCTTACCTCCCAGGCGATGCAGTGGAACAAATTAAAGCCAC-ATCGGTGAATCTTGCTTCCC
* * * * ***
32978519 CGACATTTCAGTAAAAATATTAAAGCCACAATGGCGAATCTTACT
65 CGACATTGCAGTTAAAAGATTAAAGCTACAGCAGCGAATCTTACT
32978564 TTCCAAAAGT
Statistics
Matches: 434, Mismatches: 56, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
194 92 0.21
195 34 0.08
196 133 0.31
198 65 0.15
199 106 0.24
200 4 0.01
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (197 bp):
GAATCTTACCTCCCAGGCGATGCAGTGGAACAAATTAAAGCCACATCGGTGAATCTTGCTTCCCC
GACATTGCAGTTAAAAGATTAAAGCTACAGCAGCGAATCTTACTCTCTGGCGGTGCAGTGGAGCA
GATTAAAGCCACATCGGTGAATCTTGCCTCCCCGACATTGCAGTTAAAAGATTAAAGCTAAAGCA
GC
Found at i:32978336 original size:99 final size:99
Alignment explanation
Indices: 32977864--32978562 Score: 795
Period size: 99 Copynumber: 7.1 Consensus size: 99
32977854 GTGAAATCAA
* * * *
32977864 GAATCTTATCTCCCCAGGCGATGCCGTGGAACA-ATTAAAGCCACATTGGTGAATCTTGCTTCCC
1 GAATCTTACCT-CCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCC
* * *
32977928 CGACATTGCAGTTAAAAAGGTTAAAGCCACAGCGGC
65 CGACATTGCAGTT-AAAAGATTAAAGCTACAGCAGC
* * * * * * * *
32977964 -AATCCTACTTCTCTGGCGGTGCAGTGGAGCAGATTGAAGCCACATCGATGAATCTTGCCTCCCC
1 GAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
* * *
32978028 AACATTGCAGCTAAAAGATTAAATCTACAGCAGC
66 GACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
* * **
32978062 GAATCTTACCT-CTA-GCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCCTCCTT
1 GAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
32978125 GACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
66 GACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
* * * *
32978159 GAATCTTACCT--CTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCCTCCCT
1 GAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
*
32978222 GACATTGCAGTTAAAAGATTAAAGCTAGAGCAGC
66 GACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
* * * *
32978256 GAATCTTACCTCCCAGGCAGTGCAATGGAACAAATTAAAGCCACAACGGTGAATCTTGCTTCCCC
1 GAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
32978321 GACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
66 GACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
* * * * * *
32978355 GAATCTTACTTCCCTGGTGATGACA-TGGAATAGATTAAAGCCACATTGGTGAATCTTGCTTCCC
1 GAATCTTACCTCCCAGGCGGTG-CAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCC
* * **
32978419 CGACATTGTAGTTAAAAAGATGAAAGCTACAAG-AAT
65 CGACATTGCAGTT-AAAAGATTAAAGCTAC-AGCAGC
* * * * * *
32978455 GAATCTTACTTCCCAGGCGATGTAGTGGAACAGATTAAAGCCACAAT-AGCGAATCATGCTTCCC
1 GAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCC
* * * * ***
32978519 CGACATTTCAGTAAAAATATTAAAGCCACAATGGC
65 CGACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
32978554 GAATCTTAC
1 GAATCTTAC
32978563 TTTCCAAAAG
Statistics
Matches: 513, Mismatches: 75, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
97 177 0.35
98 35 0.07
99 217 0.42
100 80 0.16
101 4 0.01
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (99 bp):
GAATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
GACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
Found at i:32978367 original size:49 final size:49
Alignment explanation
Indices: 32977914--32978564 Score: 264
Period size: 49 Copynumber: 13.2 Consensus size: 49
32977904 CCACATTGGT
* * * *
32977914 GAATCTTGCTTCCCCGACATTGCAGTTAAAAAGGTTAAAGCCACAGCGGC
1 GAATCTTACTTCCCCGACATTGCAG-TGAAAAGATTAAAGCCACAGCAGC
* * * * ** ** * * *
32977964 -AATCCTACTTCTCTGGCGGTGCAGTGGAGCAGATTGAAGCCACATC-GAT
1 GAATCTTACTTCCCCGACATTGCAGT-GAAAAGATTAAAGCCACAGCAG-C
* * * * *
32978013 GAATCTTGCCTCCCCAACATTGCAGCT-AAAAGATTAAATCTACAGCAGC
1 GAATCTTACTTCCCCGACATTGCAG-TGAAAAGATTAAAGCCACAGCAGC
* ** ** * * * *
32978062 GAATCTTACCT-CTAG-CGGTGCAGTGGAACAGATTAAAGCCACATCGGT
1 GAATCTTACTTCCCCGACATTGCAGT-GAAAAGATTAAAGCCACAGCAGC
* * ** * *
32978110 GAATCTTGCCTCCTTGACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
1 GAATCTTACTTCCCCGACATTGCAGTGAAAAGATTAAAGCCACAGCAGC
* * * ** ** * * *
32978159 GAATCTTAC--CTCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGT
1 GAATCTTACTTCCCCGACATTGCAGT-GAAAAGATTAAAGCCACAGCAGC
* * * * * *
32978207 GAATCTTGCCTCCCTGACATTGCAGTTAAAAGATTAAAGCTAGAGCAGC
1 GAATCTTACTTCCCCGACATTGCAGTGAAAAGATTAAAGCCACAGCAGC
* * * * * * * *
32978256 GAATCTTACCTCCCAGGCAGTGCAATGGAACAA-ATTAAAGCCACAACGGT
1 GAATCTTACTTCCCCGACATTGCAGT-GAA-AAGATTAAAGCCACAGCAGC
* * *
32978306 GAATCTTGCTTCCCCGACATTGCAGTTAAAAGATTAAAGCTACAGCAGC
1 GAATCTTACTTCCCCGACATTGCAGTGAAAAGATTAAAGCCACAGCAGC
* ** * *** *
32978355 GAATCTTACTTCCCTGGTGA-TGACA-TGGAATAGATTAAAGCCACATTGGT
1 GAATCTTACTTCCC-CGACATTG-CAGT-GAAAAGATTAAAGCCACAGCAGC
* * * * * **
32978405 GAATCTTGCTTCCCCGACATTGTAGTTAAAAAGATGAAAGCTACAAG-AAT
1 GAATCTTACTTCCCCGACATTGCAG-TGAAAAGATTAAAGCCAC-AGCAGC
* * * * **
32978455 GAATCTTACTTCCCAGGCGA-TGTAGTGGAACAGATTAAAGCCACAATAGC
1 GAATCTTACTTCCCCGAC-ATTGCAGT-GAAAAGATTAAAGCCACAGCAGC
* * * * * ***
32978505 GAATCATGCTTCCCCGACATTTCAGTAAAAATATTAAAGCCACAATGGC
1 GAATCTTACTTCCCCGACATTGCAGTGAAAAGATTAAAGCCACAGCAGC
32978554 GAATCTTACTT
1 GAATCTTACTT
32978565 TCCAAAAGTT
Statistics
Matches: 430, Mismatches: 145, Indels: 53
0.68 0.23 0.08
Matches are distributed among these distances:
46 1 0.00
47 16 0.04
48 55 0.13
49 183 0.43
50 169 0.39
51 6 0.01
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (49 bp):
GAATCTTACTTCCCCGACATTGCAGTGAAAAGATTAAAGCCACAGCAGC
Found at i:32985341 original size:15 final size:16
Alignment explanation
Indices: 32985321--32985361 Score: 59
Period size: 14 Copynumber: 2.6 Consensus size: 16
32985311 TTAGATCCTT
32985321 TCAAAAAAAATC-AAA
1 TCAAAAAAAATCAAAA
32985336 TC-AAAAAAATCAAAA
1 TCAAAAAAAATCAAAA
32985351 TCAAAATAAAA
1 TCAAAA-AAAA
32985362 AATGAGAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.39
15 7 0.30
16 3 0.13
17 4 0.17
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (16 bp):
TCAAAAAAAATCAAAA
Found at i:32985434 original size:22 final size:23
Alignment explanation
Indices: 32985353--32985443 Score: 64
Period size: 23 Copynumber: 4.0 Consensus size: 23
32985343 AATCAAAATC
*
32985353 AAAATAAAAAATGAGAGAAAAAGA
1 AAAATAAAAAATGACA-AAAAAGA
* *
32985377 AAGAAGAAAGAAA-GA-AAAAAGGA
1 AA-AATAAA-AAATGACAAAAAAGA
* * **
32985400 AAAAT-ATAGATGA-AAAAAATC
1 AAAATAAAAAATGACAAAAAAGA
32985421 AAAATAAAAAATGACAAAAAAGA
1 AAAATAAAAAATGACAAAAAAGA
32985444 GTAAAGGAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 11
0.68 0.16 0.15
Matches are distributed among these distances:
20 2 0.04
21 13 0.26
22 8 0.16
23 14 0.28
24 3 0.06
25 7 0.14
26 3 0.06
ACGTcount: A:0.74, C:0.02, G:0.15, T:0.09
Consensus pattern (23 bp):
AAAATAAAAAATGACAAAAAAGA
Found at i:32986321 original size:14 final size:13
Alignment explanation
Indices: 32986298--32986341 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 13
32986288 TGAGTCAGAA
*
32986298 AAAATAAAAAAATG
1 AAAATGAAAAAA-G
32986312 AAAATGAAAAAAG
1 AAAATGAAAAAAG
32986325 AAAAATGAAAAAAG
1 -AAAATGAAAAAAG
32986339 AAA
1 AAA
32986342 TGGAGAGGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 4 0.14
14 24 0.86
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (13 bp):
AAAATGAAAAAAG
Found at i:32988027 original size:50 final size:50
Alignment explanation
Indices: 32987580--32988246 Score: 280
Period size: 50 Copynumber: 13.5 Consensus size: 50
32987570 CGTGGAACAA
** * *
32987580 ATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
* * * * * * * ** * **
32987630 GTTAAAGCCACAGCGGCAAATCCTACTTCTCTGGCGGTGCAGTGGAGCAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
* * ** * *
32987680 ATTGAAGCCACATCGATGAATCTTGCCTCCCCAACATTGCAGCT--AAAAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAG-TGAAAAAG
* * * * * ** ** * *
32987729 ATTAAATCTACAGCAGCGAATCTTACCT-CTAG-CGGTGCAGTGGAACAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
* * * ** *
32987777 ATTAAAGCCACATCGGTGAATCTTGCCTCCTTGACATTGCAGT-TAAAAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
* * * * * * ** * **
32987826 ATTAAAGCTACAGCAGCGAATCTTAC--CTCTGGCGGTGCAGTGGAGCAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
* * * * *
32987874 ATTAAAGCCACATCGGTGAATCTTGCCTCCCTGACATTGCAGT-TAAAAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
* * * * * * * * * *
32987923 ATTAAAGCTAGAGCAGCGAATCTTACCTCCCAGGCAGTGCAATGGAACAA-
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGT-GAAAAAG
* * *
32987973 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
* * * * ** * *
32988023 ATTAAAGCTACAGCAGCGAATCTTACTTCCCTGGTGA-TGACA-TGGAATAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCC-CGACATTG-CAGTGAAAAAG
** * * *
32988073 ATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAAAG
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
* * *** * * * * * *
32988123 ATGAAAGCTACAAG-AATGAATCTTACTTCCCAGGCGA-TGTAGTGGAACAG
1 ATTAAAGCCAC-AGCGGCGAATCTTGCTTCCCCGAC-ATTGCAGTGAAAAAG
*** * * * *
32988173 ATTAAAGCCACAATAGCGAATCATGCTTCCCCGACATTTCAGTAAAAAAT
1 ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
**
32988223 ATTAAAGCCACAATGGCGAATCTT
1 ATTAAAGCCACAGCGGCGAATCTT
32988247 ACTTTCCAAA
Statistics
Matches: 438, Mismatches: 160, Indels: 38
0.69 0.25 0.06
Matches are distributed among these distances:
46 1 0.00
47 16 0.04
48 51 0.12
49 96 0.22
50 264 0.60
51 10 0.02
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (50 bp):
ATTAAAGCCACAGCGGCGAATCTTGCTTCCCCGACATTGCAGTGAAAAAG
Found at i:32988077 original size:100 final size:100
Alignment explanation
Indices: 32987546--32988250 Score: 793
Period size: 100 Copynumber: 7.1 Consensus size: 100
32987536 GTGAAATCAA
* * * * *
32987546 GAATCTTATCTCCCCAGGCGATGCCGTGGAACAAATTAAAGCCACATTGGTGAATCTTGCTTCCC
1 GAATCTTA-CTTCCCTGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCC
* * *
32987611 CGACATTGCAGTTAAAAAGGTTAAAGCCACAGCGGC
65 CGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGC
* * * * * * * *
32987647 AAATCCTACTTCTCTGGCGGTGCAGTGGAGCAGATTGAAGCCACATCGATGAATCTTGCCTCCCC
1 GAATCTTACTTCCCTGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
* * *
32987712 AACATTGCAGCT-AAAAGATTAAATCTACAGCAGC
66 GACATTGCAGTTAAAAAGATTAAAGCTACAGCAGC
* * * * **
32987746 GAATCTTAC--CTCTAGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCCTCCTT
1 GAATCTTACTTCCCTGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
32987809 GACATTGCAGTT-AAAAGATTAAAGCTACAGCAGC
66 GACATTGCAGTTAAAAAGATTAAAGCTACAGCAGC
* * * * *
32987843 GAATCTTAC--CTCTGGCGGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCCTCCCT
1 GAATCTTACTTCCCTGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
*
32987906 GACATTGCAGTT-AAAAGATTAAAGCTAGAGCAGC
66 GACATTGCAGTTAAAAAGATTAAAGCTACAGCAGC
* * * * *
32987940 GAATCTTACCTCCCAGGC-AGTGCAATGGAACAAATTAAAGCCACAACGGTGAATCTTGCTTCCC
1 GAATCTTACTTCCCTGGCGA-TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCC
32988004 CGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGC
65 CGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGC
* * *
32988040 GAATCTTACTTCCCTGGTGATGACA-TGGAATAGATTAAAGCCACATTGGTGAATCTTGCTTCCC
1 GAATCTTACTTCCCTGGCGATG-CAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCC
* * **
32988104 CGACATTGTAGTTAAAAAGATGAAAGCTACAAG-AAT
65 CGACATTGCAGTTAAAAAGATTAAAGCTAC-AGCAGC
* * * * *
32988140 GAATCTTACTTCCCAGGCGATGTAGTGGAACAGATTAAAGCCACAAT-AGCGAATCATGCTTCCC
1 GAATCTTACTTCCCTGGCGATGCAGTGGAACAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCC
* * * * ***
32988204 CGACATTTCAGTAAAAAATATTAAAGCCACAATGGC
65 CGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGC
32988240 GAATCTTACTT
1 GAATCTTACTT
32988251 TCCAAAAGTT
Statistics
Matches: 522, Mismatches: 72, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
97 181 0.35
99 83 0.16
100 245 0.47
101 13 0.02
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
GAATCTTACTTCCCTGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
GACATTGCAGTTAAAAAGATTAAAGCTACAGCAGC
Found at i:33006161 original size:37 final size:37
Alignment explanation
Indices: 33006099--33006217 Score: 130
Period size: 37 Copynumber: 3.2 Consensus size: 37
33006089 TTCCAACTGA
*
33006099 AACACACCAATTGCTTGTAACAGCTAATCCACCCAAT
1 AACACACCAATTGCTTATAACAGCTAATCCACCCAAT
* * * * *
33006136 AACACACCAAATGCTCATAAGAGCTAATCCACTCGAT
1 AACACACCAATTGCTTATAACAGCTAATCCACCCAAT
* ** * * *
33006173 CACACGTCAATTGCTTAGAACAGCTAATCCAACCAAA
1 AACACACCAATTGCTTATAACAGCTAATCCACCCAAT
33006210 AACACACC
1 AACACACC
33006218 CAAACAGGGA
Statistics
Matches: 62, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.40, C:0.32, G:0.09, T:0.18
Consensus pattern (37 bp):
AACACACCAATTGCTTATAACAGCTAATCCACCCAAT
Found at i:33011573 original size:24 final size:23
Alignment explanation
Indices: 33011521--33011573 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 23
33011511 GACTGTATAA
33011521 AAAATTCTAATAAATAAAAATAT
1 AAAATTCTAATAAATAAAAATAT
* *
33011544 ATAAATT-TATTAAATATTAAATATT
1 A-AAATTCTAATAAATA-AAAATA-T
33011569 AAAAT
1 AAAAT
33011574 AAAAATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 9 0.36
24 14 0.56
25 2 0.08
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAATTCTAATAAATAAAAATAT
Found at i:33015840 original size:21 final size:21
Alignment explanation
Indices: 33015816--33015858 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
33015806 TACCTTTCTA
* *
33015816 AAGTTAAAAGTCAAAATCATT
1 AAGTTAAAAGGCAAAACCATT
33015837 AAGTTAAAAGGCAAAACCATT
1 AAGTTAAAAGGCAAAACCATT
33015858 A
1 A
33015859 TATTGTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACCATT
Found at i:33016281 original size:22 final size:22
Alignment explanation
Indices: 33016200--33016286 Score: 72
Period size: 22 Copynumber: 3.9 Consensus size: 22
33016190 TATTGGTTAA
33016200 TAATTAAGTGACATAACTTTTGA-
1 TAATTAAGTGAC--AACTTTTGAT
* * * *
33016223 -ATTTAAGAGACAACTTGTCACT
1 TAATTAAGTGACAACTTTTGA-T
*
33016245 ATAAATAA-TGACAACTTTTGAT
1 -TAATTAAGTGACAACTTTTGAT
33016267 TAATTAAGTGACAACTTTTG
1 TAATTAAGTGACAACTTTTG
33016287 GTTACTTATA
Statistics
Matches: 49, Mismatches: 10, Indels: 11
0.70 0.14 0.16
Matches are distributed among these distances:
20 7 0.14
21 6 0.12
22 22 0.45
23 10 0.20
24 4 0.08
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (22 bp):
TAATTAAGTGACAACTTTTGAT
Found at i:33016773 original size:18 final size:18
Alignment explanation
Indices: 33016747--33016781 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
33016737 TTAGTGTTCT
*
33016747 AAATTACATAATATATAA
1 AAATAACATAATATATAA
33016765 AAATAACATAATATATA
1 AAATAACATAATATATA
33016782 GTATTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATAACATAATATATAA
Found at i:33018213 original size:115 final size:116
Alignment explanation
Indices: 33017850--33018256 Score: 427
Period size: 114 Copynumber: 3.6 Consensus size: 116
33017840 GTTTACCTTC
* * * *
33017850 AAGCGCCGCAAAATCTCTTAACCAAATCACAGCGTTTTGGTCTTGATCTATACTAGAATTAGTGG
1 AAGCGCCGCAACATATCTTAACCAAAACACAGCGTTTTGGTCTTGATGTATACTAGAATTAGTGG
** * *
33017915 CAATTATGGGAATACGCCGCTAAAGCA-AGTATTAGCGAC--GCTAGGTGAA
66 CAATTATGACAAAACGCCGCTAAAGCATAGTATTAGCGGCGTGCTA-GTGAA
* * * *
33017964 AAGCGCCGCAAACA-ATCTTAACGAAAACACATCGTTTTGATCTTGATGTATATTAGAATT-GTG
1 AAGCGCCGC-AACATATCTTAACCAAAACACAGCGTTTTGGTCTTGATGTATACTAGAATTAGTG
* * *
33018027 GCATTTATGACAAAACACCGCTAAAGCATAGTCTTAGCGGCGTG-TAGTGAGA
65 GCAATTATGACAAAACGCCGCTAAAGCATAGTATTAGCGGCGTGCTAGTGA-A
* * * *
33018079 AA-CGCCGCAAAATACCTTAACCAAAACGCAGCGTTTTAGTCTTGATGTATACTAGAATTAGTGG
1 AAGCGCCGCAACATATCTTAACCAAAACACAGCGTTTTGGTCTTGATGTATACTAGAATTAGTGG
** * * * *
33018143 CGCTGACGACAAAACGCCACTAAAGTATAGTATTAGCGGCGTGCT-GTGAA
66 CAATTATGACAAAACGCCGCTAAAGCATAGTATTAGCGGCGTGCTAGTGAA
* ** * * * * *
33018193 AAGTGTTGCAACATATCTTAACCAATACGCAGAG-TTTGGTCTTGAGGTACACTAGAATTAGTGG
1 AAGCGCCGCAACATATCTTAACCAAAACACAGCGTTTTGGTCTTGATGTATACTAGAATTAGTGG
33018257 TGCTTATTGG
Statistics
Matches: 243, Mismatches: 41, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
113 29 0.12
114 137 0.56
115 75 0.31
116 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (116 bp):
AAGCGCCGCAACATATCTTAACCAAAACACAGCGTTTTGGTCTTGATGTATACTAGAATTAGTGG
CAATTATGACAAAACGCCGCTAAAGCATAGTATTAGCGGCGTGCTAGTGAA
Found at i:33018415 original size:189 final size:189
Alignment explanation
Indices: 33018077--33018451 Score: 486
Period size: 189 Copynumber: 2.0 Consensus size: 189
33018067 CGTGTAGTGA
* *
33018077 GAAACGCCGCAAAATACCTTAACCAAAACGCAGCGTTTTAGTCTTGATGTATACTAGAATTAGTG
1 GAAACGCCGCAAAATACCTTAACCAAAACGCAGCGTGTTAGTCTTGATGTATAATAGAATTAGTG
* * * **
33018142 GCGCTGACGACAAAACGCCACTAAAGTATAGTATTAGCGGCGTGCTGTGAAAAGTGTTGCAACAT
66 GCGCTGAAGACAAAACGCCACTAAAGCATAGTATTAGCGGCGTGCTGTGAAAAGCGCCGCAACAT
* * *
33018207 ATCTTAACCAATACGCAGAGTTTGGTCTTGAGGTACACTAGAATTAGTGGTGCTTATTG
131 ATCTTAACCAAAACGCAGAGTTTAGTCTTGAGGTACACTAGAATTAGTGGCGCTTATTG
* * * * **
33018266 GAAAGCGCCGTAAAATATCTTAACCAAAATGCAGCGTGTTAGTCTTTATGTATAATAGCGTTAGT
1 GAAA-CGCCGCAAAATACCTTAACCAAAACGCAGCGTGTTAGTCTTGATGTATAATAGAATTAGT
* ** * * *
33018331 GGCGCTTAAG-GGAAATGCCGCTAAAGCATAGTATTAGCGGCGT-TTAGTGAAAAGCGCCGCAA-
65 GGCGCTGAAGACAAAACGCCACTAAAGCATAGTATTAGCGGCGTGCT-GTGAAAAGCGCCGCAAC
* *
33018393 AGTATCTTAACCAAAACGCAGAGTTTAGTCTTGATGTATACTAGAATTAGTGGCGCTTA
129 A-TATCTTAACCAAAACGCAGAGTTTAGTCTTGAGGTACACTAGAATTAGTGGCGCTTA
33018452 CGCGAAAATG
Statistics
Matches: 159, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
188 2 0.01
189 97 0.61
190 60 0.38
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (189 bp):
GAAACGCCGCAAAATACCTTAACCAAAACGCAGCGTGTTAGTCTTGATGTATAATAGAATTAGTG
GCGCTGAAGACAAAACGCCACTAAAGCATAGTATTAGCGGCGTGCTGTGAAAAGCGCCGCAACAT
ATCTTAACCAAAACGCAGAGTTTAGTCTTGAGGTACACTAGAATTAGTGGCGCTTATTG
Found at i:33018895 original size:25 final size:25
Alignment explanation
Indices: 33018867--33018934 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 25
33018857 AGGGTTGAGG
* *
33018867 TTTAAGGTTTATAGTTTATAAATGT
1 TTTAAGATTTAGAGTTTATAAATGT
* * *
33018892 TTTATGATTTAGGGTTTATATATGT
1 TTTAAGATTTAGAGTTTATAAATGT
* * *
33018917 TTTATGATTCAGGGTTTA
1 TTTAAGATTTAGAGTTTA
33018935 AGGAATATGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.26, C:0.01, G:0.19, T:0.53
Consensus pattern (25 bp):
TTTAAGATTTAGAGTTTATAAATGT
Found at i:33019011 original size:21 final size:22
Alignment explanation
Indices: 33018982--33019027 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
33018972 GTAATAGTTG
* *
33018982 GGGTCTAAGGTTTAAGTGTTTA
1 GGGTCTAAGGGTTAAGGGTTTA
*
33019004 GGGT-TAAGGGTTAGGGGTTTA
1 GGGTCTAAGGGTTAAGGGTTTA
33019025 GGG
1 GGG
33019028 GTTTATAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.20, C:0.02, G:0.43, T:0.35
Consensus pattern (22 bp):
GGGTCTAAGGGTTAAGGGTTTA
Found at i:33019137 original size:7 final size:7
Alignment explanation
Indices: 33019110--33019161 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
33019100 TATCATTTGA
33019110 GGTT-GG
1 GGTTAGG
33019116 GGCTTA-G
1 GG-TTAGG
33019123 GGTGTAGG
1 GGT-TAGG
*
33019131 TGTTAGG
1 GGTTAGG
33019138 GGTTAGG
1 GGTTAGG
33019145 GGTTAGG
1 GGTTAGG
*
33019152 GGTTAAG
1 GGTTAGG
33019159 GGT
1 GGT
33019162 CATGGTTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
6 3 0.08
7 33 0.85
8 3 0.08
ACGTcount: A:0.13, C:0.02, G:0.54, T:0.31
Consensus pattern (7 bp):
GGTTAGG
Found at i:33019242 original size:14 final size:14
Alignment explanation
Indices: 33019223--33019287 Score: 69
Period size: 14 Copynumber: 4.6 Consensus size: 14
33019213 TCTATGTCAA
33019223 TTTAGGGTTAAAGG
1 TTTAGGGTTAAAGG
*
33019237 TTTAGGGTTAAGGG
1 TTTAGGGTTAAAGG
*
33019251 TTAAGGGTT-AAGAG
1 TTTAGGGTTAAAG-G
* *
33019265 TTTAGGGTAAAAAG
1 TTTAGGGTTAAAGG
*
33019279 TTTACGGTT
1 TTTAGGGTT
33019288 GATGGTTTTC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
13 2 0.05
14 37 0.90
15 2 0.05
ACGTcount: A:0.29, C:0.02, G:0.34, T:0.35
Consensus pattern (14 bp):
TTTAGGGTTAAAGG
Found at i:33019245 original size:7 final size:7
Alignment explanation
Indices: 33019226--33019272 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
33019216 ATGTCAATTT
33019226 AGGGTTA
1 AGGGTTA
* *
33019233 AAGGTTT
1 AGGGTTA
33019240 AGGGTTA
1 AGGGTTA
33019247 AGGGTTA
1 AGGGTTA
33019254 AGGGTTA
1 AGGGTTA
* *
33019261 AGAGTTT
1 AGGGTTA
33019268 AGGGT
1 AGGGT
33019273 AAAAAGTTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.40, T:0.32
Consensus pattern (7 bp):
AGGGTTA
Found at i:33019252 original size:21 final size:21
Alignment explanation
Indices: 33019226--33019287 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
33019216 ATGTCAATTT
33019226 AGGGTTAAAGGTTTAGGGTTA
1 AGGGTTAAAGGTTTAGGGTTA
* * * *
33019247 AGGGTTAAGGGTTAAGAGTTT
1 AGGGTTAAAGGTTTAGGGTTA
* * *
33019268 AGGGTAAAAAGTTTACGGTT
1 AGGGTTAAAGGTTTAGGGTT
33019288 GATGGTTTTC
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.31, C:0.02, G:0.35, T:0.32
Consensus pattern (21 bp):
AGGGTTAAAGGTTTAGGGTTA
Found at i:33026758 original size:42 final size:42
Alignment explanation
Indices: 33026706--33026809 Score: 129
Period size: 42 Copynumber: 2.5 Consensus size: 42
33026696 AAAACACCGT
* *
33026706 TAAAGAACATGTTCTTTAGCGACGAATATTCACAAA-CGCCAC
1 TAAAGAACATGTTCTTTAGCGACGAATAAT-AAAAATCGCCAC
* * **
33026748 TAAAGAACATGATCTTTAGCGGCGCTTAATAAAAATCGCCAC
1 TAAAGAACATGTTCTTTAGCGACGAATAATAAAAATCGCCAC
*
33026790 TAAAGATCATGTTCTTTAGC
1 TAAAGAACATGTTCTTTAGC
33026810 AGCGTTTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 4 0.08
42 49 0.92
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (42 bp):
TAAAGAACATGTTCTTTAGCGACGAATAATAAAAATCGCCAC
Found at i:33030647 original size:9 final size:10
Alignment explanation
Indices: 33030624--33030661 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
33030614 ATTAAGGTTA
33030624 GTTAATTATG
1 GTTAATTATG
33030634 GTTAATTA-G
1 GTTAATTATG
*
33030643 GTTAATTATA
1 GTTAATTATG
*
33030653 ATTAATTAT
1 GTTAATTAT
33030662 AAATTAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (10 bp):
GTTAATTATG
Found at i:33030968 original size:25 final size:26
Alignment explanation
Indices: 33030936--33031005 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 26
33030926 TTGTAGATTC
*
33030936 TCTGAAGCTAGTGTTAGCAGCATCG-
1 TCTGAAGCTAGTGTTAGCAACATCGA
* * *
33030961 TACT-AAGCTAGTGATAGCAACCTTGA
1 T-CTGAAGCTAGTGTTAGCAACATCGA
33030987 TCTGAAGCTAGTGTTAGCA
1 TCTGAAGCTAGTGTTAGCA
33031006 CCCTGAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
25 20 0.54
26 17 0.46
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
TCTGAAGCTAGTGTTAGCAACATCGA
Found at i:33031176 original size:158 final size:158
Alignment explanation
Indices: 33030874--33031178 Score: 359
Period size: 158 Copynumber: 1.9 Consensus size: 158
33030864 TTTAAAAATA
* * ** *
33030874 AAATAGGTGTTGTGATCAGTGATTAATTCGATGGATTAAGATTCAATGTATGTTGTAGATTCTCT
1 AAATAGGTGTTGTGATCAGGGATTAATTCGATGGATTAAGATCCAACATATGTTGCAGATTCTCT
* * * *
33030939 GAAGCTAGTGTTAGCAGCATCGTACTAAGCTAGTGATAGCAACCTTGATCTGAAGCTAGTGTTAG
66 GAAGCTAGTGTTAACACCATCGAACTAAGCTAGTGATAGCAACCTTGATCCGAAGCTAGTGTTAG
*
33031004 CACCCTGAATATGTCAGCTTGTATAAAC
131 CACCCTCAATATGTCAGCTTGTATAAAC
* * * * *
33031032 AAATGGGTGTTGTGATCGGGGATTAATTTGAT-GACTTGAGATCCAACATATGTTGCGGATTCTC
1 AAATAGGTGTTGTGATCAGGGATTAATTCGATGGA-TTAAGATCCAACATATGTTGCAGATTCTC
* *
33031096 TGAAGCTAGT-TTGAACACCATTGAACCT-AGCTAGTGTTAGCAAACC-TGATCCGAAGCTAGTG
65 TGAAGCTAGTGTT-AACACCATCGAA-CTAAGCTAGTGATAGC-AACCTTGATCCGAAGCTAGTG
* *
33031158 TTAGTA-GCTCAATAATGTCAG
127 TTAGCACCCTCAAT-ATGTCAG
33031179 TATATGTAAT
Statistics
Matches: 123, Mismatches: 19, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
157 9 0.07
158 108 0.88
159 6 0.05
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (158 bp):
AAATAGGTGTTGTGATCAGGGATTAATTCGATGGATTAAGATCCAACATATGTTGCAGATTCTCT
GAAGCTAGTGTTAACACCATCGAACTAAGCTAGTGATAGCAACCTTGATCCGAAGCTAGTGTTAG
CACCCTCAATATGTCAGCTTGTATAAAC
Found at i:33046375 original size:43 final size:43
Alignment explanation
Indices: 33046309--33046417 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
33046299 GCGTCGCTAA
* * *
33046309 CTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAACTAGGAC
1 CTTTAGCGGCGCTTTACCAACAAACGCCGCTAAAAACCAAGAC
* * *
33046352 CTTTAGCGGCGCTTTGCCAACAAATGCTGCTAAAAACCAAGAC
1 CTTTAGCGGCGCTTTACCAACAAACGCCGCTAAAAACCAAGAC
*
33046395 CTTTAGCGGCGCTTTTCCAACAA
1 CTTTAGCGGCGCTTTACCAACAA
33046418 CCTTCAGCGG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.22
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTACCAACAAACGCCGCTAAAAACCAAGAC
Found at i:33046504 original size:42 final size:43
Alignment explanation
Indices: 33046453--33046538 Score: 129
Period size: 42 Copynumber: 2.0 Consensus size: 43
33046443 TGCCGCGAGT
** *
33046453 GACCAGGACCTTTAGTGGCGCTTT-CCCCAAAACGCCACTAAA
1 GACCAGGACCTTTAGCAGCGCTTTACCCAAAAACGCCACTAAA
*
33046495 GACCAGGACCTTTAGCAGCGCTTTATCCAAAAACGCCACTAAA
1 GACCAGGACCTTTAGCAGCGCTTTACCCAAAAACGCCACTAAA
33046538 G
1 G
33046539 GTCACGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 22 0.56
43 17 0.44
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (43 bp):
GACCAGGACCTTTAGCAGCGCTTTACCCAAAAACGCCACTAAA
Found at i:33047476 original size:23 final size:23
Alignment explanation
Indices: 33047442--33047858 Score: 224
Period size: 23 Copynumber: 18.3 Consensus size: 23
33047432 AATAGAAAGT
*
33047442 AGCACTTTAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* **
33047465 AGCGA-TAAAACA-TCTCAATTTGT
1 AGC-ACTTAAACACT-TCAATTTAC
33047488 AGCAAC-TAAACACTTCAATTTAC
1 AGC-ACTTAAACACTTCAATTTAC
33047511 AGCACTTAAACA-TATCAA-TTATC
1 AGCACTTAAACACT-TCAATTTA-C
* * * *
33047534 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
33047556 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
**
33047579 AGCAAC-TAAACACTTCAATTCGC
1 AGC-ACTTAAACACTTCAATTTAC
* * *
33047602 AGCATTTAAACACTTAAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
33047625 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
33047648 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
33047670 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
33047693 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
33047716 AGCACTTAAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* * *
33047739 AGCATTTAAACACTTAAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
33047762 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * **
33047785 AACATTTATACACCACAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
33047807 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
33047830 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
33047853 AGCACT
1 AGCACT
33047859 ATCAAATTTC
Statistics
Matches: 297, Mismatches: 67, Indels: 60
0.70 0.16 0.14
Matches are distributed among these distances:
22 53 0.18
23 239 0.80
24 5 0.02
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (23 bp):
AGCACTTAAACACTTCAATTTAC
Found at i:33047643 original size:91 final size:90
Alignment explanation
Indices: 33047442--33047645 Score: 241
Period size: 91 Copynumber: 2.2 Consensus size: 90
33047432 AATAGAAAGT
* **
33047442 AGCACTTTAACACTTCAATTTACAGCGATAAAACATCTCAATTTGTAGCAACTAAACACTTCAAT
1 AGCACTTAAACA-TTCAA-TTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAAT
* *
33047507 TTACAGCACTTAAACATATCAATTATC
64 TCACAGCACTTAAACATATAAATTATC
* * * *
33047534 AACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATT
1 AGCACTTAAACA-TTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATT
* *
33047599 CGCAGCATTTAAACACT-TAAATT-TGC
65 CACAGCACTTAAACA-TATAAATTAT-C
33047625 AGCACTTAAACATATCAATTA
1 AGCACTTAAACAT-TCAATTA
33047646 ACAACATTTA
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
90 1 0.01
91 79 0.84
92 14 0.15
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (90 bp):
AGCACTTAAACATTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTC
ACAGCACTTAAACATATAAATTATC
Found at i:33047656 original size:114 final size:114
Alignment explanation
Indices: 33047494--33047750 Score: 451
Period size: 114 Copynumber: 2.3 Consensus size: 114
33047484 TTGTAGCAAC
*
33047494 TAAACACTTCAATTTACAGCACTTAAACATATCAATTATCAACATTTATACACCTCAATTACAGC
1 TAAACACTTCAATTTACAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGC
*
33047559 GATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTCGCAGCATT
66 GATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTCGCAGCACT
* *
33047608 TAAACACTTAAATTTGCAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGC
1 TAAACACTTCAATTTACAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGC
* *
33047673 GATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACT
66 GATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTCGCAGCACT
*
33047722 TAAACACTTCAATTTACAGCATTTAAACA
1 TAAACACTTCAATTTACAGCACTTAAACA
33047751 CTTAAATTTG
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 134 1.00
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.29
Consensus pattern (114 bp):
TAAACACTTCAATTTACAGCACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGC
GATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTCGCAGCACT
Found at i:33047857 original size:137 final size:137
Alignment explanation
Indices: 33047570--33047858 Score: 526
Period size: 137 Copynumber: 2.1 Consensus size: 137
33047560 ATAAAACATC
* *
33047570 TCAATTTCCAGCAAC-TAAACACTTCAATTCGCAGCATTTAAACACTTAAATTTGCAGCACTTAA
1 TCAATTTGCAGC-ACTTAAACACTTCAATTCACAGCATTTAAACACTTAAATTTGCAGCACTTAA
*
33047634 ACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAAC
65 ACATATCAATTAACAACATTTATACACCACAATTACAGCGATAAAACATCTCAATTTCCAGCAAC
33047699 TAAATACT
130 TAAATACT
*
33047707 TCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAA
1 TCAATTTGCAGCACTTAAACACTTCAATTCACAGCATTTAAACACTTAAATTTGCAGCACTTAAA
33047772 CATATCAATTAACAACATTTATACACCACAATTACAGCGATAAAACATCTCAATTTCCAGCAACT
66 CATATCAATTAACAACATTTATACACCACAATTACAGCGATAAAACATCTCAATTTCCAGCAACT
33047837 AAATACT
131 AAATACT
33047844 TCAATTTGCAGCACT
1 TCAATTTGCAGCACT
33047859 ATCAAATTTC
Statistics
Matches: 147, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
136 2 0.01
137 145 0.99
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.29
Consensus pattern (137 bp):
TCAATTTGCAGCACTTAAACACTTCAATTCACAGCATTTAAACACTTAAATTTGCAGCACTTAAA
CATATCAATTAACAACATTTATACACCACAATTACAGCGATAAAACATCTCAATTTCCAGCAACT
AAATACT
Found at i:33048277 original size:41 final size:39
Alignment explanation
Indices: 33048194--33048277 Score: 114
Period size: 39 Copynumber: 2.1 Consensus size: 39
33048184 GCACAATACA
**
33048194 ATATAAAAAGCATATATAAATATATGAATGTAGAGGCAT
1 ATATAAAAAGCATATATAAATATATGAATGTAGAGAAAT
* *
33048233 ATATAAAAAGCATATATAAATATATGTATGTCATAGAAACT
1 ATATAAAAAGCATATATAAATATATGAATGT-AGAGAAA-T
33048274 ATAT
1 ATAT
33048278 TCATTTATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 30 0.77
40 4 0.10
41 5 0.13
ACGTcount: A:0.51, C:0.06, G:0.12, T:0.31
Consensus pattern (39 bp):
ATATAAAAAGCATATATAAATATATGAATGTAGAGAAAT
Found at i:33052721 original size:41 final size:41
Alignment explanation
Indices: 33052675--33052982 Score: 259
Period size: 41 Copynumber: 7.5 Consensus size: 41
33052665 TAGTGGTGCT
33052675 TTTTGAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCGA
1 TTTTGAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCGA
* * * * * *
33052716 TTTTGACAAAGCGTCGCTAAGGACCCGAGCATTAGTGGTGC
1 TTTTGAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCGA
** * * * * *
33052757 TTTTTTAGAAGCGCTGCTGAAGACCAGAGCATTAGTGGCG-
1 TTTTGAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCGA
* **
33052797 TTTTGGGAAAAGCGCCGCTAAAGACCTTAGCATTAGCGGC-A
1 TTTT-GAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCGA
** * *
33052838 CTTTTTCAAAATCGCCGCGAAAGACCCGAGCATTAGCGGC-A
1 -TTTTGAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCGA
** * * **
33052879 TTTTTTTAGAAGCGCCGCTGAAGACCAAAGCATTAGCGGCG-
1 -TTTTGAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCGA
* * *
33052920 TTTTGGGAAAAGCACCGCTAAAGACCCGAGCATTAGCGGCGCT
1 TTTT-GAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCG-A
*
33052963 TTTTCAAAAA-CGCC-CTAAAG
1 TTTTGAAAAAGCGCCGCTAAAG
33052983 CCTCGAAAGG
Statistics
Matches: 212, Mismatches: 48, Indels: 15
0.77 0.17 0.05
Matches are distributed among these distances:
40 14 0.07
41 186 0.88
42 8 0.04
43 4 0.02
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (41 bp):
TTTTGAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCGA
Found at i:33052886 original size:123 final size:123
Alignment explanation
Indices: 33052663--33052976 Score: 407
Period size: 123 Copynumber: 2.5 Consensus size: 123
33052653 TCAATTTGGG
* * * *
33052663 ATTAGTGGTGCTTTTTGAAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCGA--TTTTGACAAA
1 ATTAGTGGCG-TTTTGGGAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGC-ACTTTTTCA-AAA
* * * * * ** * *
33052726 GCGTCGCTAAGGACCCGAGCATTAGTGGTGCTTTTTTAGAAGCGCTGCTGAAGACCAGAGC
63 ACGCCGCGAAAGACCCGAGCATTAGCGGCACTTTTTTAGAAGCGCCGCTGAAGACCAAAGC
** *
33052787 ATTAGTGGCGTTTTGGGAAAAGCGCCGCTAAAGACCTTAGCATTAGCGGCACTTTTTCAAAATCG
1 ATTAGTGGCGTTTTGGGAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCACTTTTTCAAAAACG
*
33052852 CCGCGAAAGACCCGAGCATTAGCGGCATTTTTTTAGAAGCGCCGCTGAAGACCAAAGC
66 CCGCGAAAGACCCGAGCATTAGCGGCACTTTTTTAGAAGCGCCGCTGAAGACCAAAGC
* * *
33052910 ATTAGCGGCGTTTTGGGAAAAGCACCGCTAAAGACCCGAGCATTAGCGGCGCTTTTTCAAAAACG
1 ATTAGTGGCGTTTTGGGAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCACTTTTTCAAAAACG
33052975 CC
66 CC
33052977 CTAAAGCCTC
Statistics
Matches: 166, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
122 1 0.01
123 151 0.91
124 14 0.08
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (123 bp):
ATTAGTGGCGTTTTGGGAAAAGCGCCGCTAAAGACCCGAGCATTAGCGGCACTTTTTCAAAAACG
CCGCGAAAGACCCGAGCATTAGCGGCACTTTTTTAGAAGCGCCGCTGAAGACCAAAGC
Found at i:33053166 original size:41 final size:40
Alignment explanation
Indices: 33053078--33053170 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
33053068 GCTTTTTTTG
* *
33053078 AAACGCCGCGAATGCTCGATCTTTAGCAGCGTTTTACATA
1 AAACGCCGCTAATGCTCAATCTTTAGCAGCGTTTTACATA
* * * *
33053118 AAGCGCCGCTAATGCTCAATTTTTAGCGGCGGTTTT-TATA
1 AAACGCCGCTAATGCTCAATCTTTAGCAGC-GTTTTACATA
33053158 CAAACGCCGCTAA
1 -AAACGCCGCTAA
33053171 AAATGCCGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
40 28 0.64
41 16 0.36
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
AAACGCCGCTAATGCTCAATCTTTAGCAGCGTTTTACATA
Found at i:33054281 original size:169 final size:169
Alignment explanation
Indices: 33054002--33054332 Score: 583
Period size: 169 Copynumber: 2.0 Consensus size: 169
33053992 TACATGTATA
* * *
33054002 TATATTTGATTTGTCTTAGTGATTTTATGGTAGATTTAAAGCTCACCTGGTCCTTTCTAGTTTCT
1 TATATTTGATTTGTATTAGTGATTTTATGGTAGATTTAAAGCTCACCTGGTCATTTCTAGTGTCT
*
33054067 GTAATTAAAGATTTATAATATTCGGGTTGTTATTCGTTATAGTAATTTGTATTTCTTTTTTCTTG
66 GTAATTAAAGATTTATAATATTCGGGTTGTTATTCGTTATAGTAATTTGTACTTCTTTTTTCTTG
33054132 TTTGAGAGTTGCTTCTTATTATAGCTTCAACACCTTATT
131 TTTGAGAGTTGCTTCTTATTATAGCTTCAACACCTTATT
*
33054171 TATATTTGATTTGTATTAGTGATTTTAT-GTCAGATTTAAAGCTTACCTGGTCATTTCTAGTGTC
1 TATATTTGATTTGTATTAGTGATTTTATGGT-AGATTTAAAGCTCACCTGGTCATTTCTAGTGTC
33054235 TGTAATTAAAGATTTATAATATTCGGGTTGTTATTCGTTATAGTAATTTGTACTTCTTTTTTCTT
65 TGTAATTAAAGATTTATAATATTCGGGTTGTTATTCGTTATAGTAATTTGTACTTCTTTTTTCTT
* *
33054300 GTTTGAGAGTTTCTTCTTGTTATAGCTTCAACA
130 GTTTGAGAGTTGCTTCTTATTATAGCTTCAACA
33054333 AAGTCTTATT
Statistics
Matches: 154, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
168 2 0.01
169 152 0.99
ACGTcount: A:0.23, C:0.11, G:0.16, T:0.50
Consensus pattern (169 bp):
TATATTTGATTTGTATTAGTGATTTTATGGTAGATTTAAAGCTCACCTGGTCATTTCTAGTGTCT
GTAATTAAAGATTTATAATATTCGGGTTGTTATTCGTTATAGTAATTTGTACTTCTTTTTTCTTG
TTTGAGAGTTGCTTCTTATTATAGCTTCAACACCTTATT
Found at i:33058204 original size:14 final size:16
Alignment explanation
Indices: 33058170--33058214 Score: 76
Period size: 14 Copynumber: 2.9 Consensus size: 16
33058160 GTTCGCTGTA
33058170 TTGGATTAGAGGTGTG
1 TTGGATTAGAGGTGTG
33058186 TTGGATTAGAGG-G-G
1 TTGGATTAGAGGTGTG
33058200 TTGGATTAGAGGTGT
1 TTGGATTAGAGGTGT
33058215 AATAGCAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 13 0.48
15 2 0.07
16 12 0.44
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.36
Consensus pattern (16 bp):
TTGGATTAGAGGTGTG
Found at i:33058472 original size:18 final size:17
Alignment explanation
Indices: 33058451--33058485 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
33058441 TTATTATTAA
*
33058451 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
33058469 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
33058486 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:33058539 original size:157 final size:157
Alignment explanation
Indices: 33058338--33058654 Score: 589
Period size: 157 Copynumber: 2.0 Consensus size: 157
33058328 TAGAATACCC
*
33058338 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* *
33058403 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
33058468 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
33058495 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
33058560 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
*
33058625 TATATAATTTAATATAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
33058652 TTA
1 TTA
33058655 ATATTCTTAT
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 155 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:33058625 original size:16 final size:16
Alignment explanation
Indices: 33058588--33058629 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
33058578 TTAATCATAT
*
33058588 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
33058604 TT-AAATATATTATAA
1 TTAAAATATATTATAA
33058619 TTAAAATATAT
1 TTAAAATATAT
33058630 AATTTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:33058718 original size:66 final size:63
Alignment explanation
Indices: 33058647--33058844 Score: 175
Period size: 66 Copynumber: 3.2 Consensus size: 63
33058637 TATAATTCTT
33058647 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTA
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT-TAAAATA-AAATTA
* ** * * * * *
33058712 ACATAATTATTATT-AAATAT--A-TTA-T--AAT--TAAAATAT-ATAATT-TAATAAATTCTT
1 A-ATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTTAAAATAAAAT-TA
*
33058766 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTG
1 AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT-TAAAATAAAA-TT-
33058831 A
63 A
33058832 AATAATTAATATT
1 AATAATTAATATT
33058845 AAATATATTT
Statistics
Matches: 100, Mismatches: 17, Indels: 31
0.68 0.11 0.21
Matches are distributed among these distances:
53 14 0.14
54 10 0.10
55 1 0.01
56 5 0.05
57 10 0.10
58 1 0.01
59 3 0.03
60 3 0.03
61 1 0.01
62 10 0.10
63 5 0.05
64 1 0.01
65 11 0.11
66 25 0.25
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (63 bp):
AATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTTAAAATAAAATTA
Found at i:33058735 original size:15 final size:15
Alignment explanation
Indices: 33058707--33058758 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
33058697 GTAAAATATA
33058707 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
33058722 TATTAAATATATTAT
1 AATTAAATATATTAT
33058737 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
33058750 AATTTAATA
1 AATTAAATA
33058759 AATTCTTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:33058756 original size:14 final size:15
Alignment explanation
Indices: 33058597--33058640 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
33058587 TTTAAACATA
*
33058597 ATTATTATTAAATAT
1 ATTATAATTAAATAT
33058612 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
33058626 A-TATAATTTAATAT
1 ATTATAATTAAATAT
33058640 A
1 A
33058641 ATTCTTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 9 0.35
14 6 0.23
15 11 0.42
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:33058806 original size:119 final size:120
Alignment explanation
Indices: 33058586--33058879 Score: 495
Period size: 119 Copynumber: 2.5 Consensus size: 120
33058576 ATTTAATCAT
*
33058586 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATATAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATA-AATTCTTAATA
* *
33058651 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAA
65 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AA
33058708 A-TT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAATTCTTAATAA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAATTCTTAATAA
33058771 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
66 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
* * *
33058826 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAA
33058880 ATTTAAAATA
Statistics
Matches: 165, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
118 3 0.02
119 109 0.66
120 50 0.30
121 2 0.01
122 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAATTCTTAATAA
TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
Found at i:33058942 original size:13 final size:13
Alignment explanation
Indices: 33058924--33058966 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
33058914 ATGAATTTGT
33058924 ATAATTTAAAATA
1 ATAATTTAAAATA
*
33058937 ATAATTATAACAT-
1 ATAATT-TAAAATA
33058950 ATAATTTAATAATA
1 ATAATTTAA-AATA
33058964 ATA
1 ATA
33058967 TATAATTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 3 0.12
13 14 0.56
14 8 0.32
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAATTTAAAATA
Found at i:33058964 original size:18 final size:18
Alignment explanation
Indices: 33058938--33058979 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
33058928 TTTAAAATAA
*
33058938 TAATTATAACATATAATT
1 TAATAATAACATATAATT
*
33058956 TAATAATAATATATAATT
1 TAATAATAACATATAATT
*
33058974 TCATAA
1 TAATAA
33058980 AATTCTTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (18 bp):
TAATAATAACATATAATT
Found at i:33058992 original size:101 final size:93
Alignment explanation
Indices: 33058825--33059105 Score: 279
Period size: 91 Copynumber: 3.0 Consensus size: 93
33058815 TATAAAAGAA
* * * *
33058825 AATTTGAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATT-TAAAA
1 AATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCT----
* * * *
33058888 TAATTATAACTAATAAATTATATTTTATGAATTTGTAT
61 T-A--ATAA-T-ATAAATTTTATTATATGAATTTATAC
*
33058926 AATTTAAAATAA-TAAT-TATAACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGA
1 AATTTAAAATAATTAATAT-TAA-ATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
*
33058989 T-A-ATAAATTTTCTTATATGAATTTATAC
64 TAATATAAATTTTATTATATGAATTTATAC
* *
33059017 AATTTAAAATAATTAATATTAAATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAATA
1 AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
* *
33059082 ATA-AAATGTTCTTATATGAATTTA
66 ATATAAATTTTATTATATGAATTTA
33059106 CTAAAATCAA
Statistics
Matches: 158, Mismatches: 14, Indels: 25
0.80 0.07 0.13
Matches are distributed among these distances:
91 72 0.46
92 28 0.18
93 2 0.01
94 1 0.01
95 2 0.01
98 1 0.01
99 1 0.01
100 10 0.06
101 40 0.25
102 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (93 bp):
AATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAATA
ATATAAATTTTATTATATGAATTTATAC
Found at i:33064499 original size:7 final size:7
Alignment explanation
Indices: 33064489--33064522 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
33064479 CAAAACACAT
*
33064489 CAACAAA
1 CAACAGA
33064496 CAACAGA
1 CAACAGA
33064503 CAACAGA
1 CAACAGA
33064510 CAACAGA
1 CAACAGA
33064517 CAACAG
1 CAACAG
33064523 TATCAACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.59, C:0.29, G:0.12, T:0.00
Consensus pattern (7 bp):
CAACAGA
Found at i:33065901 original size:28 final size:28
Alignment explanation
Indices: 33065847--33065901 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
33065837 GCAAATCGGT
* *
33065847 AGAAAAGAAAAGAAAATAAACATAGGGC
1 AGAAAAGAAAAGAAAAGAAACAGAGGGC
*
33065875 AGAAAAGAAAAGAAAAGAAACGGAGGG
1 AGAAAAGAAAAGAAAAGAAACAGAGGG
33065902 AGCAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.64, C:0.05, G:0.27, T:0.04
Consensus pattern (28 bp):
AGAAAAGAAAAGAAAAGAAACAGAGGGC
Found at i:33075352 original size:42 final size:42
Alignment explanation
Indices: 33075287--33075386 Score: 166
Period size: 42 Copynumber: 2.4 Consensus size: 42
33075277 CTATATGAAC
*
33075287 GGCACTAAGTGTACGAAACTAAAATGATGATGTTGAATAAT-
1 GGCACTAAGTGTGCGAAACTAAAATGATGATGTTGAATAATA
*
33075328 GGACACTAAGTGTGCGAAATTAAAATGATGATGTTGAATAATA
1 GG-CACTAAGTGTGCGAAACTAAAATGATGATGTTGAATAATA
33075371 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
33075387 TACCGAGAGT
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
41 2 0.04
42 51 0.93
43 2 0.04
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.26
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAACTAAAATGATGATGTTGAATAATA
Found at i:33080112 original size:12 final size:13
Alignment explanation
Indices: 33080091--33080123 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
33080081 GAAGGAAATC
*
33080091 ACACATGGCCT-G
1 ACACACGGCCTGG
33080103 ACACACGGCCTGG
1 ACACACGGCCTGG
33080116 ACACACGG
1 ACACACGG
33080124 GCCTATCCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.09
Consensus pattern (13 bp):
ACACACGGCCTGG
Found at i:33086026 original size:16 final size:16
Alignment explanation
Indices: 33086007--33086052 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
33085997 TTTTTATTCA
33086007 TTTATTTATTTAATAG
1 TTTATTTATTTAATAG
* *
33086023 TTTA-TTATCTTATTAT
1 TTTATTTAT-TTAATAG
33086039 TTTATTTATTTAAT
1 TTTATTTATTTAAT
33086053 CTATTAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 4 0.16
16 17 0.68
17 4 0.16
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (16 bp):
TTTATTTATTTAATAG
Found at i:33087441 original size:30 final size:30
Alignment explanation
Indices: 33087395--33087452 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
33087385 TTGGGCATTT
* *
33087395 CCACACAAGCTGGACACATGCCCTTGTGTG
1 CCACACAAGCTAGACACATGCCCATGTGTG
*
33087425 CCACACGAGCTAGACACATGCCCATGTG
1 CCACACAAGCTAGACACATGCCCATGTG
33087453 CCAGCCCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.34, G:0.22, T:0.17
Consensus pattern (30 bp):
CCACACAAGCTAGACACATGCCCATGTGTG
Found at i:33089745 original size:26 final size:26
Alignment explanation
Indices: 33089691--33089763 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
33089681 ATGAATTTTC
*
33089691 TCAAAATTTTA-CTGAGGTAAAATCG
1 TCAAAATTTTATCTGGGGTAAAATCG
* **
33089716 TCAAAATTTTATCGGGGGTAAAATTT
1 TCAAAATTTTATCTGGGGTAAAATCG
33089742 TCAAAAATTTTAT-TGGGGTAAA
1 TC-AAAATTTTATCTGGGGTAAA
33089764 CTTGGGATGA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 11 0.27
26 20 0.49
27 10 0.24
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (26 bp):
TCAAAATTTTATCTGGGGTAAAATCG
Found at i:33093553 original size:42 final size:42
Alignment explanation
Indices: 33093494--33093586 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
33093484 CAAGTTAGGC
33093494 AGTTACACGGCCTGGCACACAGGCGTGCGTGGCTATTTCGAG
1 AGTTACACGGCCTGGCACACAGGCGTGCGTGGCTATTTCGAG
* * * *
33093536 AGTTACATGGCCTGGCACACGGGCGTGTGTGGCTATTTTGAG
1 AGTTACACGGCCTGGCACACAGGCGTGCGTGGCTATTTCGAG
33093578 AGTTACACG
1 AGTTACACG
33093587 ACCTCACTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.19, C:0.23, G:0.33, T:0.25
Consensus pattern (42 bp):
AGTTACACGGCCTGGCACACAGGCGTGCGTGGCTATTTCGAG
Found at i:33093602 original size:42 final size:42
Alignment explanation
Indices: 33093494--33093603 Score: 112
Period size: 42 Copynumber: 2.6 Consensus size: 42
33093484 CAAGTTAGGC
* ** *
33093494 AGTTACACGGCCTGGCACACAGGCGTGCGTGGCTATTTCGAG
1 AGTTACACGACCTCACACACGGGCGTGCGTGGCTATTTCGAG
* * ** * *
33093536 AGTTACATGGCCTGGCACACGGGCGTGTGTGGCTATTTTGAG
1 AGTTACACGACCTCACACACGGGCGTGCGTGGCTATTTCGAG
* *
33093578 AGTTACACGACCTCACTCATGGGCGT
1 AGTTACACGACCTCACACACGGGCGT
33093604 ATGGCTTGGC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.25
Consensus pattern (42 bp):
AGTTACACGACCTCACACACGGGCGTGCGTGGCTATTTCGAG
Found at i:33104270 original size:40 final size:40
Alignment explanation
Indices: 33104215--33104338 Score: 153
Period size: 40 Copynumber: 3.1 Consensus size: 40
33104205 TGAATGATAC
* *
33104215 CCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATTTTAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
33104255 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTATAT
* * *
33104295 CCGGGCTAAGACCC-AAGGGAATTTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAA-TTGTGCTAGTGATTATAT
33104335 CCGG
1 CCGG
33104339 ATAAATTCTG
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
39 7 0.10
40 62 0.86
41 3 0.04
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:33106278 original size:8 final size:8
Alignment explanation
Indices: 33106265--33106291 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
33106255 AAAAGTTATA
33106265 TGCAAAGT
1 TGCAAAGT
33106273 TGCAAAGT
1 TGCAAAGT
33106281 TGCAAAGT
1 TGCAAAGT
33106289 TGC
1 TGC
33106292 GGGTTCTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (8 bp):
TGCAAAGT
Found at i:33108224 original size:40 final size:40
Alignment explanation
Indices: 33107956--33108224 Score: 457
Period size: 40 Copynumber: 6.7 Consensus size: 40
33107946 GCAAACACAT
* * * *
33107956 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
* *
33107996 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
* *
33108036 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
*
33108076 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
33108116 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
33108156 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
33108196 TTGCCTTCGGGTCTTAGCCCGGATATATT
1 TTGCCTTCGGGTCTTAGCCCGGATATATT
33108225 CCAATGCTCA
Statistics
Matches: 217, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
Found at i:33115468 original size:40 final size:40
Alignment explanation
Indices: 33115200--33115468 Score: 457
Period size: 40 Copynumber: 6.7 Consensus size: 40
33115190 GCAAACACAT
* * * *
33115200 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
* *
33115240 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
* *
33115280 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
*
33115320 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
33115360 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
33115400 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
33115440 TTGCCTTCGGGTCTTAGCCCGGATATATT
1 TTGCCTTCGGGTCTTAGCCCGGATATATT
33115469 CCAATGCTCA
Statistics
Matches: 217, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
Found at i:33116815 original size:56 final size:56
Alignment explanation
Indices: 33116755--33116935 Score: 170
Period size: 56 Copynumber: 3.1 Consensus size: 56
33116745 TATTTTATAG
*
33116755 TATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
1 TATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
* * * * * * *
33116811 TATTA-A-ATTATATATTTTTATTAAATTGTATTTAATAATAATT-ATGTTAAAATATATTTTAT
1 TATTATATATTATA-A-TTTTAGTAAATT-CATATAAGAATATTTAATATT--AAGA-A--TT-T
33116873 ACTATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
1 --TATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
33116931 TATTA
1 TATTA
33116936 AATCATATAT
Statistics
Matches: 96, Mismatches: 15, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
54 5 0.05
55 2 0.02
56 25 0.26
57 11 0.11
58 4 0.04
59 3 0.03
61 3 0.03
62 4 0.04
63 11 0.11
64 20 0.21
65 2 0.02
66 6 0.06
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (56 bp):
TATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
Found at i:33116846 original size:120 final size:120
Alignment explanation
Indices: 33116712--33117341 Score: 1011
Period size: 120 Copynumber: 5.3 Consensus size: 120
33116702 TATATTTAGA
* * *
33116712 AAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 AAAA-TATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGT
* * * *
33116777 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATT
65 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
* * * * *
33116833 AAATTGTATTTAATAATAATTATGTTAAAATATATTTTATACTATTATATATTATAATTTTAGTA
1 AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
* *
33116898 AATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATCATATATTTTAATT
66 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
*
33116953 AAAATATATTGAATAATAATTAT-TTCAAATTATATTTTATAGTATCATATATTATAATTTTAGT
1 AAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTATCATATATTATAATTTTAGT
33117017 AAATTC--AT---AATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
65 AAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
*
33117068 AAAATATATTTAATAATAAGTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
1 AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
*
33117133 AATTCATATAAGAATGTTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
66 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
* *
33117188 AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTA
1 AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
*
33117253 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATT
66 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
*
33117308 AAAATATATTTAATAATAATTATGTTAAAATATA
1 AAAATATATTTAATAATAATTATGTTAAATTATA
33117342 ATTAAATATT
Statistics
Matches: 477, Mismatches: 25, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
115 106 0.22
116 2 0.00
117 2 0.00
118 2 0.00
119 2 0.00
120 360 0.75
121 3 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
Found at i:33117140 original size:235 final size:236
Alignment explanation
Indices: 33116712--33117341 Score: 1003
Period size: 235 Copynumber: 2.6 Consensus size: 236
33116702 TATATTTAGA
*
33116712 AAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 AAAA-TATATTTAATAATAATTA-TTTAAATTATATTTTATAGTATCATATATTATGATTTTAGT
* * * * *
33116777 AAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTGTAT
64 AAATTCA-AT-A-AATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATAT
*
33116842 TTAATAATAATTATGTTAAAATATATTTTATACTATTATATATTATAATTTTAGTAAATTCATAT
126 TTAATAATAATTATGTTAAAATATATTTTATACTATCATATATTATAATTTTAGTAAATTCATAT
*
33116907 AAGAATATTTAATATTAAGAATTTTATTAAATCATATATTTTAATT
191 AAGAATATTGAATATTAAGAATTTTATTAAATCATATATTTTAATT
* *
33116953 AAAATATATTGAATAATAATTATTTCAAATTATATTTTATAGTATCATATATTATAATTTTAGTA
1 AAAATATATTTAATAATAATTATTT-AAATTATATTTTATAGTATCATATATTATGATTTTAGTA
*
33117018 AATTC-AT-AATATTGATTATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAA
65 AATTCAATAAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
* * *
33117081 TAATAAGTATGTTAAATTATATTTTATAGTATCATATATTATAATTTTAGTAAATTCATATAAGA
130 TAATAATTATGTTAAAATATATTTTATACTATCATATATTATAATTTTAGTAAATTCATATAAGA
* *
33117146 ATGTTGATTATTAAGAATTTTATTAAATCATATATTTTAATT
195 ATATTGAATATTAAGAATTTTATTAAATCATATATTTTAATT
*
33117188 AAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTA
1 AAAATATATTTAATAATAATTAT-TTAAATTATATTTTATAGTATCATATATTATGATTTTAGTA
33117253 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATT
65 AATTCA-AT-A-AATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATT
33117318 TAATAATAATTATGTTAAAATATA
127 TAATAATAATTATGTTAAAATATA
33117342 ATTAAATATT
Statistics
Matches: 360, Mismatches: 22, Indels: 15
0.91 0.06 0.04
Matches are distributed among these distances:
235 214 0.59
236 2 0.01
237 2 0.01
238 2 0.01
239 3 0.01
240 133 0.37
241 4 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (236 bp):
AAAATATATTTAATAATAATTATTTAAATTATATTTTATAGTATCATATATTATGATTTTAGTAA
ATTCAATAAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT
AATAATTATGTTAAAATATATTTTATACTATCATATATTATAATTTTAGTAAATTCATATAAGAA
TATTGAATATTAAGAATTTTATTAAATCATATATTTTAATT
Found at i:33117310 original size:18 final size:17
Alignment explanation
Indices: 33117282--33117316 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
33117272 ATTATTAAGA
*
33117282 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
33117299 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
33117317 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:33117569 original size:16 final size:16
Alignment explanation
Indices: 33117548--33117580 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
33117538 TTGATTTGCT
33117548 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
33117564 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
33117580 A
1 A
33117581 ATACAGTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:33117727 original size:25 final size:23
Alignment explanation
Indices: 33117699--33117756 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 23
33117689 GAATATGGTG
33117699 TGTTTTATAAATGATTGTAATTGAA
1 TGTTTTATAAA--ATTGTAATTGAA
*
33117724 TGTTTTAAGTTAAATTGTAATTGAA
1 TGTTTT-A-TAAAATTGTAATTGAA
33117749 TGTTTTAT
1 TGTTTTAT
33117757 GCTAAAAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
23 1 0.03
24 1 0.03
25 24 0.80
26 1 0.03
27 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.52
Consensus pattern (23 bp):
TGTTTTATAAAATTGTAATTGAA
Found at i:33117762 original size:25 final size:25
Alignment explanation
Indices: 33117712--33117762 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
33117702 TTTATAAATG
*
33117712 ATTGTAATTGAATGTTTTAAGTTAA
1 ATTGTAATTGAATGTTTTAAGCTAA
*
33117737 ATTGTAATTGAATGTTTTATGCTAA
1 ATTGTAATTGAATGTTTTAAGCTAA
33117762 A
1 A
33117763 AGTTTCTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (25 bp):
ATTGTAATTGAATGTTTTAAGCTAA
Found at i:33119627 original size:20 final size:20
Alignment explanation
Indices: 33119604--33119646 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
33119594 ACTACAGTGT
* *
33119604 CCTTATTTGCACATCTGTGC
1 CCTTATCTGCACATCGGTGC
* *
33119624 CCTTGTCTGCACTTCGGTGC
1 CCTTATCTGCACATCGGTGC
33119644 CCT
1 CCT
33119647 GTTATGCATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.09, C:0.35, G:0.19, T:0.37
Consensus pattern (20 bp):
CCTTATCTGCACATCGGTGC
Found at i:33125417 original size:26 final size:26
Alignment explanation
Indices: 33125373--33125427 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
33125363 ATTATTTATT
**
33125373 AAATGTGTAAGTGTTATGGTAAGAAG
1 AAATGTGTAAGTGAAATGGTAAGAAG
* * *
33125399 AAATGTTTAAGTGAAATGGTTATAAG
1 AAATGTGTAAGTGAAATGGTAAGAAG
33125425 AAA
1 AAA
33125428 AAATATATAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (26 bp):
AAATGTGTAAGTGAAATGGTAAGAAG
Found at i:33128582 original size:50 final size:50
Alignment explanation
Indices: 33128526--33128657 Score: 183
Period size: 50 Copynumber: 2.6 Consensus size: 50
33128516 TATTGAGGTA
* * *
33128526 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* *
33128576 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
** * *
33128626 ATGAGAACTCCCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGA
33128658 TTTGGCATTG
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 72 1.00
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:33128946 original size:20 final size:20
Alignment explanation
Indices: 33128921--33128969 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
33128911 TGAGTTATTT
33128921 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
33128941 AAGTAAG-AGAGTAAGTAAAT
1 AAGTAAGCA-AGTAAGTAAAC
33128961 AAG-AAGCAA
1 AAGTAAGCAA
33128970 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.22, T:0.14
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:33136325 original size:50 final size:50
Alignment explanation
Indices: 33136220--33136344 Score: 128
Period size: 50 Copynumber: 2.5 Consensus size: 50
33136210 TTATTGAGGT
* * * *
33136220 TATGAAAGGTCCCACGTAAGACTATGTCCCAGACATGGCGTTGGCCTCGA
1 TATGAGAGGTCCCACGTAAGACCATGTCCCAGACATGGCATGGGCCTCGA
* * *
33136270 GATGAGAGGTCCCCCGTAAGACCATGT-CTAGGACATGGCATGGGCACT-GA
1 TATGAGAGGTCCCACGTAAGACCATGTCCCA-GACATGGCATGGGC-CTCGA
** *
33136320 TATGAGAACTCCCATGTAAGACCAT
1 TATGAGAGGTCCCACGTAAGACCAT
33136345 ATCTGGGATA
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
49 2 0.03
50 57 0.93
51 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (50 bp):
TATGAGAGGTCCCACGTAAGACCATGTCCCAGACATGGCATGGGCCTCGA
Found at i:33136621 original size:4 final size:4
Alignment explanation
Indices: 33136614--33136661 Score: 53
Period size: 4 Copynumber: 12.0 Consensus size: 4
33136604 ATGATTTATT
* * *
33136614 TAAG TAAG TAAG TAAG TAAG TAAA CAAG TAAG -AGAG TAAG TAAA TAAG
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TA-AG TAAG TAAG TAAG
33136662 AAGCAAAGAC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
3 1 0.03
4 34 0.94
5 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.23, T:0.21
Consensus pattern (4 bp):
TAAG
Found at i:33136644 original size:20 final size:20
Alignment explanation
Indices: 33136619--33136657 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
33136609 TTATTTAAGT
33136619 AAGTAAGTA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
33136639 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
33136658 TAAGAAGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.03, G:0.23, T:0.18
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:33141133 original size:27 final size:26
Alignment explanation
Indices: 33141090--33141230 Score: 93
Period size: 27 Copynumber: 5.3 Consensus size: 26
33141080 ATAGTTATTG
** *
33141090 TTTTACCTACAGGGGTATTACGGTTA
1 TTTTACCTACAAAGGTATTACGGTCA
33141116 TTTTACCTTACAAAGGTATTACGGTCA
1 TTTTACC-TACAAAGGTATTACGGTCA
* * * **
33141143 TTTTACCCTACGAGGGTATTTCAATCA
1 TTTTA-CCTACAAAGGTATTACGGTCA
* * * ** *
33141170 TTTTACCCATCAAGGGTATTTCTATTA
1 TTTTACCTA-CAAAGGTATTACGGTCA
* * *
33141197 TTTTACCCATAGAAGGTATTTCGGTCA
1 TTTTACCTACA-AAGGTATTACGGTCA
33141224 TTTTACC
1 TTTTACC
33141231 CATCGAGGGT
Statistics
Matches: 94, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
26 11 0.12
27 81 0.86
28 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (26 bp):
TTTTACCTACAAAGGTATTACGGTCA
Found at i:33141188 original size:54 final size:54
Alignment explanation
Indices: 33141130--33141254 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 54
33141120 ACCTTACAAA
* * *
33141130 GGTATTACGGTCATTTTACCC-TACGAGGGTATTTCAATCATTTTACCCATCAAG
1 GGTATTTCGGTAATTTTACCCATA-GAAGGTATTTCAATCATTTTACCCATCAAG
** * ** *
33141184 GGTATTTCTATTATTTTACCCATAGAAGGTATTTCGGTCATTTTACCCATCGAG
1 GGTATTTCGGTAATTTTACCCATAGAAGGTATTTCAATCATTTTACCCATCAAG
33141238 GGTATTTCGGTAATTTT
1 GGTATTTCGGTAATTTT
33141255 TCAAATATTG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 57 0.97
55 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACCCATAGAAGGTATTTCAATCATTTTACCCATCAAG
Found at i:33141231 original size:27 final size:27
Alignment explanation
Indices: 33141130--33141254 Score: 137
Period size: 27 Copynumber: 4.6 Consensus size: 27
33141120 ACCTTACAAA
*
33141130 GGTATTACGGTCATTTTACCC-TACGAG
1 GGTATTTCGGTCATTTTACCCATA-GAG
**
33141157 GGTATTTCAATCATTTTACCCATCA-AG
1 GGTATTTCGGTCATTTTACCCAT-AGAG
** * *
33141184 GGTATTTCTATTATTTTACCCATAGAA
1 GGTATTTCGGTCATTTTACCCATAGAG
*
33141211 GGTATTTCGGTCATTTTACCCATCGAG
1 GGTATTTCGGTCATTTTACCCATAGAG
*
33141238 GGTATTTCGGTAATTTT
1 GGTATTTCGGTCATTTT
33141255 TCAAATATTG
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 80 0.96
28 1 0.01
29 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (27 bp):
GGTATTTCGGTCATTTTACCCATAGAG
Found at i:33145194 original size:40 final size:40
Alignment explanation
Indices: 33145139--33145572 Score: 760
Period size: 40 Copynumber: 10.8 Consensus size: 40
33145129 GAGCATTTGA
*
33145139 ATATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
33145179 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
33145219 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
33145259 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
33145299 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
33145339 ATATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
33145379 ATATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
33145419 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
33145459 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
33145499 ATATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** * *
33145539 CTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
33145573 TCGTGGTAAT
Statistics
Matches: 378, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 378 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:33147313 original size:40 final size:40
Alignment explanation
Indices: 33147229--33147412 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
33147219 TTGAATGCTG
* * * *
33147229 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
33147268 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
33147309 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
33147349 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
33147389 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33147413 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:33147366 original size:80 final size:81
Alignment explanation
Indices: 33147229--33147409 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
33147219 TTGAATGCTG
* *
33147229 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
33147293 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
33147309 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
33147370 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
33147389 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
33147410 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:33155281 original size:40 final size:40
Alignment explanation
Indices: 33155197--33155380 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
33155187 TTGAATGCTG
* * * *
33155197 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
33155236 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
33155277 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
33155317 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
33155357 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33155381 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:33155334 original size:80 final size:81
Alignment explanation
Indices: 33155197--33155377 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
33155187 TTGAATGCTG
* *
33155197 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
33155261 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
33155277 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
33155338 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
33155357 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
33155378 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Done.