Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 111 of 214
Found at i:33532933 original size:20 final size:20
Alignment explanation
Indices: 33532887--33532933 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
33532877 AGCTTGTTTC
*
33532887 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
33532907 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
33532927 CAGCTCA
1 CAGCTCA
33532934 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:33538938 original size:18 final size:18
Alignment explanation
Indices: 33538917--33538951 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
33538907 TTTTTCTTTT
33538917 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
33538935 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
33538952 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:33543201 original size:18 final size:19
Alignment explanation
Indices: 33543170--33543211 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
33543160 TTTTTTAAAA
*
33543170 TTTTTATTGAATTTCGTCTT
1 TTTTTATT-AATTTCGACTT
*
33543190 TTTTTATT-ATTTTGACTT
1 TTTTTATTAATTTCGACTT
33543208 TTTT
1 TTTT
33543212 GACTGATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 12 0.60
20 8 0.40
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (19 bp):
TTTTTATTAATTTCGACTT
Found at i:33544669 original size:21 final size:20
Alignment explanation
Indices: 33544645--33544712 Score: 82
Period size: 21 Copynumber: 3.1 Consensus size: 20
33544635 CTTACAAGAC
33544645 TTTTCACTTTTTTTTGTTTTT
1 TTTTCACTTTTTTTT-TTTTT
*
33544666 TTTTTACTTTTTTTTTTTTT
1 TTTTCACTTTTTTTTTTTTT
33544686 TTTGCTCACTTCTTTTTCTTTTTT
1 TTT--TCACTT-TTTTT-TTTTTT
33544710 TTT
1 TTT
33544713 GAATTTCGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
20 8 0.20
21 14 0.34
22 5 0.12
23 5 0.12
24 9 0.22
ACGTcount: A:0.04, C:0.12, G:0.03, T:0.81
Consensus pattern (20 bp):
TTTTCACTTTTTTTTTTTTT
Found at i:33544670 original size:22 final size:21
Alignment explanation
Indices: 33544645--33544712 Score: 84
Period size: 22 Copynumber: 3.2 Consensus size: 21
33544635 CTTACAAGAC
33544645 TTTTCACTTTTTTTTGTTTTTT
1 TTTTCACTTTTTTTT-TTTTTT
33544667 TTTT-ACTTTTTTTTTTTTTT
1 TTTTCACTTTTTTTTTTTTTT
* * *
33544687 TTGCTCACTTCTTTTTCTTTTT
1 TT-TTCACTTTTTTTTTTTTTT
33544709 TTTT
1 TTTT
33544713 GAATTTCGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
20 8 0.20
21 12 0.30
22 20 0.50
ACGTcount: A:0.04, C:0.12, G:0.03, T:0.81
Consensus pattern (21 bp):
TTTTCACTTTTTTTTTTTTTT
Found at i:33547409 original size:40 final size:41
Alignment explanation
Indices: 33547353--33547563 Score: 256
Period size: 40 Copynumber: 5.3 Consensus size: 41
33547343 CATTTGAATG
* *
33547353 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
33547393 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
33547433 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
33547473 TTATCC-GGCTCAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
33547512 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTAG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
33547552 ATATCC-GGCTAA
1 ATATCCGGGCTAA
33547564 ATTCTGAAGA
Statistics
Matches: 144, Mismatches: 22, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
39 38 0.26
40 104 0.72
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
Found at i:33547534 original size:79 final size:79
Alignment explanation
Indices: 33547353--33547563 Score: 334
Period size: 79 Copynumber: 2.7 Consensus size: 79
33547343 CATTTGAATG
33547353 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGACCCGAAGGCA
*
33547418 TTTGTGCGAGTTGCT
65 TTTGTGCGAGTTGAT
* *
33547433 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTCAGACCCGAAGGCAT
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGACCCGAAGGCAT
33547498 TTGTGCGAGTTGAT
66 TTGTGCGAGTTGAT
* * * *
33547512 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGT-AGTTATATCCGGCTAA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGA-TTTTATCCGGCTAA
33547564 ATTCTGAAGA
Statistics
Matches: 121, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
78 1 0.01
79 75 0.62
80 45 0.37
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGAT
Found at i:33552061 original size:40 final size:40
Alignment explanation
Indices: 33551870--33552054 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
33551860 TTGAATGATG
* * * *
33551870 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
33551910 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33551950 TCCAGCCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33551989 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33552030 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33552055 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33553678 original size:79 final size:80
Alignment explanation
Indices: 33553589--33553745 Score: 196
Period size: 79 Copynumber: 2.0 Consensus size: 80
33553579 AACCCAGTTA
* * *
33553589 TAGTAACTCGCACAATTGCCTTCGGGA-CTTA-ACCTGGATTTAGTAAC-TCGCACAAATGCCTT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGACC-GGATATAGTAACTTAGCACAAA-GCCTT
33553651 CGGG-CTTAGCCCGGAAT
63 CGGGACTTAGCCCGGAAT
* * * *
33553668 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGGATATAGTAACTTAGCACAAAGCCTTCGG
33553733 GACTTAGCCCGGA
66 GACTTAGCCCGGA
33553746 CATCATTCAA
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 43 0.64
80 21 0.31
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGACCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:33553682 original size:39 final size:40
Alignment explanation
Indices: 33553561--33553745 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
33553551 GCTACTCGTT
* * * *
33553561 CAAATGCCTTCGGGACATAACCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * * *
33553601 CAATTGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
33553641 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
33553680 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
33553721 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33553746 CATCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.02
39 34 0.28
40 74 0.60
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:33556768 original size:80 final size:79
Alignment explanation
Indices: 33556684--33556855 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
33556674 GGACTAAGAT
*
33556684 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
33556748 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
33556764 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
33556829 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
33556843 CCGAAGGCATTTG
1 CCGAAGGCATTTG
33556856 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:33556835 original size:39 final size:39
Alignment explanation
Indices: 33556631--33556853 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
33556621 TTGAATGCTG
* * * * *
33556631 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
33556671 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
33556710 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
33556751 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
33556791 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
33556830 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33556854 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:33556873 original size:79 final size:80
Alignment explanation
Indices: 33556711--33556888 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
33556701 AGATACAAAT
* * * *
33556711 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
33556776 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
33556791 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
33556855 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
33556870 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
33556889 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:33563051 original size:40 final size:39
Alignment explanation
Indices: 33562968--33563110 Score: 160
Period size: 40 Copynumber: 3.6 Consensus size: 39
33562958 TTGAATGCTG
* * * *
33562968 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAA
* *
33563008 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAA
* * * *
33563048 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTAATAAA
* *
33563087 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
33563111 TGAACGAGGA
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 35 0.39
40 50 0.56
41 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTAATAAA
Found at i:33571002 original size:40 final size:40
Alignment explanation
Indices: 33570911--33571090 Score: 199
Period size: 39 Copynumber: 4.5 Consensus size: 40
33570901 GCTACTCGTT
* *
33570911 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
33570950 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
33570990 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
33571029 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
33571070 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
33571091 TGGACATCAT
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 62 0.52
40 44 0.37
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:33571030 original size:79 final size:80
Alignment explanation
Indices: 33570911--33571090 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
33570901 GCTACTCGTT
* * *
33570911 CAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTGCACAATTGCCTTCGGGA-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTGCACAAATGCCTTC-GGATCTTAACCCGG
* *
33570975 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
* * **
33570990 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCAGATA-TAGTAACT-GCACAAATGCCTTCGGATCTTAACCCG
* *
33571053 GATATGGTCACTTAGCA
64 GATATAGTAACTTAGCA
33571070 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
33571091 TGGACATCAT
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.01
78 18 0.21
79 51 0.60
80 15 0.18
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCAGATATAGTAACTGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:33577828 original size:18 final size:20
Alignment explanation
Indices: 33577805--33577854 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
33577795 AAAGGAAGAC
33577805 AGAAAAAGA-AATCAAAAA-
1 AGAAAAAGAGAATCAAAAAG
*
33577823 AGAAAAAGAGAATGAAAAAG
1 AGAAAAAGAGAATCAAAAAG
33577843 AGCAAAAAGAGA
1 AG-AAAAAGAGA
33577855 TTGATAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 2 0.07
21 9 0.32
ACGTcount: A:0.72, C:0.04, G:0.20, T:0.04
Consensus pattern (20 bp):
AGAAAAAGAGAATCAAAAAG
Found at i:33583068 original size:20 final size:20
Alignment explanation
Indices: 33583043--33583097 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
33583033 TGTGGTTCAA
*
33583043 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
33583063 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
33583083 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
33583098 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:33585714 original size:20 final size:20
Alignment explanation
Indices: 33585689--33585743 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
33585679 ACGAGTTAAA
* *
33585689 TTGAGCTTGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTAAC
*
33585709 TTGAGCACGAATGAGCTAAC
1 TTGAGCTCGAATGAGCTAAC
33585729 TTGAGCTCGAATGAG
1 TTGAGCTCGAATGAG
33585744 TTGAACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTAAC
Found at i:33590095 original size:556 final size:558
Alignment explanation
Indices: 33586594--33596591 Score: 16816
Period size: 557 Copynumber: 18.0 Consensus size: 558
33586584 CAAAGAAAGA
* * * * *
33586594 TGTTTTGAGCGATTTCCAGAATCATGAAAATAAAGATTTCAAATCTT-CAAATATTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
33586658 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAGA-CAATTTTGGT
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGA-ACCAATTTTGGT
*
33586722 AGAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTTCCAAGCCCAATCA
130 AGAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCA
*
33586787 GGAAATTTAAATTTGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTT-TAAAAT
195 GGAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAAT
*
33586851 TTTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAATTTCAGCCCA
260 TTTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCA
33586916 AGCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTC
325 AGCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTC
*
33586981 CTAATAGGGTTAGGAAAATTGTTAAGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAA
390 CTAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAA
*
33587046 TTTATTAGCAAGACCTTAGTTGCGTATACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
455 TTTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
**
33587111 TCAAGAAAATCAAGAAACCGAATCTTGGTCCAGCTTTGC
520 TCAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
** *
33587150 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCGTATCCTGGAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* * * *
33587215 AATCGAATCCTGCAGCTAAGGCGCGTTGGATCTCAGTTACGAGCCTCAACGAACCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
*
33587280 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCGCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
* * * * *
33587345 GAAATTTAAATTTGACTTAGTTGAAAATAAGGCTAAATTGTCAAAGTGGTCCAATTTGTAAAGTT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
* * *
33587410 TTAAATACCTATTTTTAATTTTTAGACTTTATGATTTAATTTCTATGTAAAAAATTTCAGCCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
33587475 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
33587540 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
33587605 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
* *
33587670 CAAGAAAATCAAGAAACCGAATCTTGCTTCAATTTTGC
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* * ** *
33587708 TGTTTTGAGCGATTTCCAGAATCAAGAAAATAAAGATTTCAAATCTTCAAAATATTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* * *
33587773 AACCGAATCTTGTAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAGCGAGCCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
*
33587838 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTTCCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
*
33587903 GAAATTTAAATTAGACTTAGTTGAAAATCAAGCCAAATTGTCAAAGTGG-CCAATTTGTAAAATT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
** *
33587967 TTAAATACGAAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCAAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
* * * *
33588032 GAAGCCCTTTAAAAGCCTTAGCCGAATTTCCCCTTGATATTAGTAATTATTTTTTTTTAGAATTC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTA-TTTTTTTTAGATTTC
* * *
33588097 CTAATAGGGTTAGGAAAATAGTTAGGAGGCTTATGCGTTCAAAACTAAATGGAACCTTTCAAGAA
390 CTAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAA
*
33588162 TTTATTAGCAAGACCTTAGTTGCGTATACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
455 TTTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
* *
33588227 TCAACAAAAGCAAGAAACC-AATCTTGGTCCAATTTTGC
520 TCAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* *
33588265 TGTTTTGAGCGATTTTAAGAATCAAGAAAATCAAGATTTCAAATCTTGTAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
33588330 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
* *
33588395 CAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTTCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
33588460 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
*
33588525 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAACCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
33588590 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
* *
33588655 TAATAGGGTTAGGAAAATTGTTAGGAAGCTTATGCGTTCAAAACTTGATGGAACCATTCAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
33588720 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
* *
33588785 CAAGAAAATCAAGAAACCGAATCTTGCTTCAATTTTGC
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* * * * *
33588823 TGTTTTGAGCAATTTCCAGAATCAAGAAAATAAAGATTTCAAATCTT-CAAATATTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* *
33588887 AACCGAATCTTGCAGCTAAGGTGCATTGGATCTCAGTTACGAGCATCAACGAGCCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
*
33588952 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAATACGTTCCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
* *
33589017 GAAATTTAAATTTGACTT-GTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAAGT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
* *
33589081 TTAACTACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGT-AAAAAATTCAGGCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
*
33589145 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGGTTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
*
33589210 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTTAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
*
33589275 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAA-CAAATCAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
** *
33589339 CAAGAAAATCAAGAAACCGAATCTTGGTCCACCTTTGT
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
*
33589377 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCCAATCTTGGAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* * * *
33589442 AACCGAATCCTGCAGCTAAGACGCATTGGACCTCAGTTGCGAGCATCAACGAACCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
* *
33589507 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTTTCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
33589572 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
*
33589637 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAACCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
33589702 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
*
33589767 TAATAGGGTTAGGAAAATTGTTAGGAAGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
33589832 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
* *
33589897 CAAGAAAATCAAGAAACCGAATCTTGCTTC-ATTTTGC
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* * **
33589934 TGTTTTGAGCGATTTCCAGAATCAAGAAAATAAAGATTTCAAATCTTCAAAAT-TTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* *
33589998 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAGCGAGCCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
*
33590063 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTTCCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
*
33590128 GAAATTTAAATTAGACTTAGTTGAAAATCAAGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
** *
33590193 TTAAATACGAAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCAAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
* * *
33590258 GAAGCCCTTTAAAAGCCTTAGCCGAATTTCCCCTTGATATTAGTAATTATTTTTTTTTAGATTTC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTA-TTTTTTTTAGATTTC
* * * *
33590323 CTAATAGAGTTAGGAAAATAGTTAGGAGGCTTATGCGTTCAAAACTAAATGGAACCTTTCAAGAA
390 CTAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAA
*
33590388 TTTATTAGCAAGACCTTAGTTGCGTATACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
455 TTTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
* * *
33590453 TCAACAAAAACAAGAAACCAAATCTTGGTCCAATTTTGC
520 TCAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* *
33590492 TGTTTTGAGCGATTTTAAGAATCAAGAAAATCAAGATTTCAAATCTTGTAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
*
33590557 GACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
* *
33590622 CAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCAAATAAGACGTTCCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
* *
33590687 GAAATTTAAATTTGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAAGT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
* * * *
33590752 TTAACTACCTAGTTTTAATTATTAGACTTTATGATTTAATTCCTATGTAAAAAATTTCAGGCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
*
33590817 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGGTTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
*
33590882 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCATTCAAAACTAGATGGAACCATTCAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
* *
33590947 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAACAACATCAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
** ** *
33591012 CAAGAAAATCAAGAAACCGAATCTTGGTCCACCTAGGT
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
*
33591050 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCCAATCTTGGAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* * * * **
33591115 AACCGAATCCTGTAGCTAAGACGCATTGGACCTCAGTTGTGAGCATCAACGAACCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
*
33591180 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTTCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
33591245 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
*
33591310 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAACCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
33591375 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
* *
33591440 TAATAGGGTTAGGAAAATTGTTAGGAAGCTTATGCGTTCAAAACTTGATGGAACCATTCAAG-A-
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
33591503 --ATT-GCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
* *
33591565 CAAGAAAATCAAGAAACCGAATCTTGCTTCAATTTTGC
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* * * * * *
33591603 TATTTTAAGTGATTTCCAA-AATCAAGAAAATAAAGATTTCAAATCTT-CAAATATTGGTCCAAG
1 TGTTTTGAGCGATTT-CAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAG
* * *
33591666 AAACCGAATCTTGCAGCTAAGGTGCATTGGATCTCAGTTACGAGCATCAACGAGCCAATTTTGGA
65 AAACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGT
* *
33591731 AGAAAACAGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTTCCAAGCCCAATCA
130 AGAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCA
33591796 GGAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGT-AAAT
195 GGAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAAT
** * * *
33591860 TTTAAATACGAAGTTTTAATTTTTAGACTTTATCATTTAATTCCTATGTAAAAAATTTCAGCCAA
260 TTTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCA
* *
33591925 AGAAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGGTTTC
325 AGCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTC
* *
33591990 CTAATAGGGTTAGGAAAATAGTTAGGAGGCTTATGCGTTCAAAACTAAATGGAACCATTCAAGAA
390 CTAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAA
* *
33592055 TTTATTAGCAAGACCTTAGTTGCATATACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
455 TTTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
* *
33592120 TCAACAAAA-CAAGAAACCAAATCTTGGTCCAATTTTGC
520 TCAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* *
33592158 TGTTTTGAGCGATTTTAAGAATCAAGAAAATCAAGATTTCAAATCTTGTAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
33592223 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGT-
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
*
33592287 GCAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTTCAAGCCCAATCA
131 G-AAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCA
33592352 GGAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAAT
195 GGAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAAT
*
33592417 TTTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAACCCA
260 TTTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCA
33592482 AGCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTC
325 AGCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTC
* *
33592547 CTAATAGGGTTAGGAAAATTGTTAGGAAGCTTATGCGTTCAAAACTTGATGGAACCATTCAAGAA
390 CTAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAA
33592612 TTTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
455 TTTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTT
*
33592677 TCAAGAAAATCAAGAAACCGAATC-TGGCTTCAATTTTGC
520 TCAAGAAAATCAAGAAACCGAATCTTGG-TCCAATTTTGC
* * * * *
33592716 TGTTTTGAGCAATTTCCAGAATCAAGAAAATAAAGATTTCAAATCTT-CAAATATTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* *
33592780 AACCGAATCTTGCAGCTAAGGTGCATTGGATCTCAGTTACGAGCATCAACGAGCCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
* *
33592845 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGACCAATAAGATGTTCCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
33592910 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
** * *
33592975 TTAAATACGAAGTTTTAATTTTTAGACTTTATGGTTTAATTCCTATGTAAAAAAATTCAGCCAAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
* * *
33593040 GAAGCCCTTTAAAAGCCTTAGCCGAATTTCCCCTTGATATTAGTAATTATTTTTTTTAGATTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
* * * *
33593105 TAATAGGGTTTGGAAAATAGTTAGGAGGCTTATGCGTTCAAAACTAAATGGAACCATGCAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
* *
33593170 TTATTAGCAAGACCTTAGTTGCGTATACGAAGGAAAAAGAAAATTAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
* * *
33593235 CAACAAAAACAAGAAACCAAATCTTGGTCCAATTTTGC
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* * * *
33593273 TGTTTTGAGCGATTTTAATAATCAAGAAAATTAAGATTTCAAATCTTGTAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
33593338 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
*
33593403 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATTAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
* *
33593468 GAAATTTAAATTTGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAAGT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
* * *
33593533 TTAACTACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAATTTCAGGCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
* *
33593598 GCAGCCCTTTAAAAGCCTTGGCCGAATTTACCCTTGAAATTAGTAATTATTTTTTTTAGGTTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
** *
33593663 TAATACAGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGGAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
*
33593728 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAACAAAATCAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
** *
33593793 CAAGAAAATCAAGAAACCGAATCTTGGTCCAGCTTTGT
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* *
33593831 TGTTTTGAGCGATTTCAAGAATCAGGAAAATCAAGATTTCCAATCTTGGAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* ** * *
33593896 AACCGAATCCTGCAGCTAAGATGCATTGGACCTCAGTTGCGAGCATCAACGAACCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
* * *
33593961 GAAATCGGATTACAAGCCCAAGTTCTTGAAGGTAAGGCCCAATAAGACGTTTCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
* *
33594026 GAAATTTAAATTTGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCAAATTTGTAAAATT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
*
33594091 TTAAATACCTAGTTTTAATTTTTAGACTTTA-GATTTAATTCCTATGTAAAAAAATTCAACCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
33594155 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
* *
33594220 TAATAGGGTTAGGAAAA-TGTTAGGAAGCTTATGCGTTCAAAACTTGATGGAACCATTCAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
* *
33594284 TT-TTAGCAAGACCTTAGTTGCATAAACAAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
**
33594348 CAAGAAAATCAAGAAACCGAATCTTGGTCCAGCTTTGC
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* * *
33594386 TGGTTTGAGAGATTTCTAGAATCAAGAAAATCAAGATTTCAAATCTT-GAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* * * **
33594450 AACCGAATCTTGCAGCTAAGGCGTATTGGATCTCAGTTACGAGCATCAATGAGCCAATTTTCTTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
* *
33594515 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGTAAGGCCCAATAAGATGTTCCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
* * *
33594580 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTAGCCCAATTCGTAAATTT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
* *
33594645 TTAAATACCTAGTTTTAATTTTTAGACTTTCTGATTTAATTCCTATGTAAAAAAATTTAGCCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
* *
33594710 GCAGCCCTTTAAAAGCCTTGGCCGAATATCTCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
*
33594775 TAATA-GGTTAGGAAAATTGTTAGGAGCCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
*
33594839 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGTTTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
* * * *
33594904 CAGGAAAATCAAGAAACCTAATATTGGT-CAAGCTTTGC
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAA-TTTTGC
**
33594942 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGA-TTCGTATCTT-GAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* *
33595005 AACCGAATCCTGCAGCTAAGGCGCATTGGATCTCAATTACGAGCATCAACGAACCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
*
33595070 CAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
* * * *
33595135 GAAATTTAACTTTGACTTAGTTGAAAATCAGGCC-AATTGTCAAAGTGACCCGATTTGTAAAATT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
*
33595199 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAATTTCAGCCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
*
33595264 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAATAATTATTTTTTTTAGATTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
33595329 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTA-ATGGAACCATTCAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
*
33595393 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGG-AAAA-AAAATTAAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
* *
33595456 CAAGAAAATCAAGAAACCGAATCTTGCTTCAATTTTGC
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
**
33595494 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCGTATCTTGGAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* * *
33595559 AACCGAATCCTGCAGCTAAGGCGCATTGGATCTCAATTATGAGCATCAACGAACCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
* *
33595624 CAAAACAGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
* * *
33595689 GAAATTTAACTTTGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCGATTTGTAAAATT
196 GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
* * *
33595754 TTAAATTCCTAGTTTTAATTTTTAGACTTTATGATTTATTTCCTATGTAAAAAATTTCAGCCCAA
261 TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
*
33595819 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAATAATTATTTTTTTTAGATTTCC
326 GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
33595884 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
391 TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
*
33595949 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAATAAAAT-AAGATTCACTTTCTTGTTTT
456 TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
* *
33596013 CAAGAAAATCAAGAAACCGAATCTTGCTTCAATTTTGC
521 CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
* * *
33596051 TGTTTTGAGCGATTTCTAGAATCAAGAAAATAAAGATTTCAAATCTTCGAAATCTTGGTCCAAGA
1 TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
* * *
33596116 AACCAAATCTTGTAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAGCCAATTTTGGTA
66 AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
*
33596181 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGATGTTCCAAGCCCAATCAG
131 GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
*
33596246 GAAATTTAAATTTA-ACTTAGTTGAAAATCAGACCAAATTGTCAAAGTGGCCCAATTTGTAAAAT
196 GAAATTTAAA-TTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAAT
* * *
33596310 TTTAAATACGTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAGAAAAATTCAGCCAA
260 TTTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCA
* * *
33596375 AGAAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTAAAATTAGTAATTATTTTTTTTTAGTTTT
325 AGCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTA-TTTTTTTTAGATTT
* * *
33596440 CCTAATAGGATTAGGAAAATAGTTAGGAGGCTTATGCGTTCAAAACTAAATGGAACCATTCAAGA
389 CCTAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGA
* *
33596505 ATTTTTTAGCAAGACCTTAGTTGCGTATACGAAGG--AAAGAAAATCAAGATTCACTTTCTTGTT
454 ATTTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTT
*
33596568 TTCAAGAAAATCAATAAACCGAAT
519 TTCAAGAAAATCAAGAAACCGAAT
33596592 GATATGAGCT
Statistics
Matches: 8856, Mismatches: 543, Indels: 85
0.93 0.06 0.01
Matches are distributed among these distances:
551 185 0.02
552 282 0.03
553 143 0.02
554 728 0.08
555 1104 0.12
556 1019 0.12
557 2602 0.29
558 2492 0.28
559 301 0.03
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (558 bp):
TGTTTTGAGCGATTTCAAGAATCAAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGTCCAAGA
AACCGAATCTTGCAGCTAAGGCGCATTGGATCTCAGTTACGAGCATCAACGAACCAATTTTGGTA
GAAAACGGATTACAAGCCCAAGTTCTTGAAGGCAAGGCCCAATAAGACGTTCCAAGCCCAATCAG
GAAATTTAAATTAGACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAATTTGTAAAATT
TTAAATACCTAGTTTTAATTTTTAGACTTTATGATTTAATTCCTATGTAAAAAAATTCAGCCCAA
GCAGCCCTTTAAAAGCCTTGGCCGAATTTCCCCTTGAAATTAGTAATTATTTTTTTTAGATTTCC
TAATAGGGTTAGGAAAATTGTTAGGAGGCTTATGCGTTCAAAACTAGATGGAACCATTCAAGAAT
TTATTAGCAAGACCTTAGTTGCGTAAACGAAGGAAAAAGAAAATCAAGATTCACTTTCTTGTTTT
CAAGAAAATCAAGAAACCGAATCTTGGTCCAATTTTGC
Found at i:33618061 original size:14 final size:14
Alignment explanation
Indices: 33618044--33618070 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33618034 TTTACCATGA
33618044 CATTTTAGTGTAGG
1 CATTTTAGTGTAGG
33618058 CATTTTAGTGTAG
1 CATTTTAGTGTAG
33618071 CCAAATTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.26, T:0.44
Consensus pattern (14 bp):
CATTTTAGTGTAGG
Found at i:33620936 original size:15 final size:15
Alignment explanation
Indices: 33620900--33620930 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33620890 TCCTCGAAAA
33620900 TCACATACCACGGGT
1 TCACATACCACGGGT
*
33620915 TCACATACCTCGGGT
1 TCACATACCACGGGT
33620930 T
1 T
33620931 TTCATATCGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (15 bp):
TCACATACCACGGGT
Found at i:33622325 original size:37 final size:37
Alignment explanation
Indices: 33622275--33622348 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
33622265 GGTGAGCATT
33622275 AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
1 AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
33622312 AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
1 AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
33622349 TACATATCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.54, C:0.19, G:0.11, T:0.16
Consensus pattern (37 bp):
AAAATCCAAGTGTGAGATCAACACAAATATAAACACA
Found at i:33630891 original size:40 final size:40
Alignment explanation
Indices: 33630574--33630877 Score: 440
Period size: 40 Copynumber: 7.7 Consensus size: 40
33630564 TTGAATTCTG
* *
33630574 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
33630613 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
33630653 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
33630692 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33630732 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33630772 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33630812 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33630853 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33630878 AACGAGGAGC
Statistics
Matches: 246, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
39 54 0.22
40 182 0.74
41 10 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33638741 original size:39 final size:40
Alignment explanation
Indices: 33638646--33638988 Score: 502
Period size: 40 Copynumber: 8.7 Consensus size: 40
33638636 TTGAATTCTG
* *
33638646 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
33638685 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
33638725 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
33638764 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33638804 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33638843 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
33638883 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33638923 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
33638964 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33638989 AACGAGGAGC
Statistics
Matches: 284, Mismatches: 12, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
39 93 0.33
40 181 0.64
41 10 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33639007 original size:80 final size:80
Alignment explanation
Indices: 33638646--33638988 Score: 486
Period size: 79 Copynumber: 4.3 Consensus size: 80
33638636 TTGAATTCTG
* * **
33638646 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGCA
*
33638707 TTTGTGCGAGA-TACTAAT
63 TTTGTGCGA-ATTACTAAA
*
33638725 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
*
33638789 GTGCGAGTTACTAAA
66 GTGCGAATTACTAAA
*
33638804 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
*
33638868 GTGCGAGTTACTAAA
66 GTGCGAATTACTAAA
*
33638883 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
33638948 GTGCGAATTACTATAA
66 GTGCGAATTACTA-AA
*
33638964 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33638989 AACGAGGAGC
Statistics
Matches: 246, Mismatches: 10, Indels: 15
0.91 0.04 0.06
Matches are distributed among these distances:
78 10 0.04
79 139 0.57
80 95 0.39
81 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GTGCGAATTACTAAA
Found at i:33658090 original size:22 final size:22
Alignment explanation
Indices: 33658077--33658156 Score: 88
Period size: 22 Copynumber: 3.6 Consensus size: 22
33658067 ACCGAACAAC
33658077 CACCATACAACCACCATATCAA
1 CACCATACAACCACCATATCAA
* * * *
33658099 CACCATTCAACCACCTTAGCAC
1 CACCATACAACCACCATATCAA
* *
33658121 CACCACACCACCACCATATCAA
1 CACCATACAACCACCATATCAA
* *
33658143 AACCATACCACCAC
1 CACCATACAACCAC
33658157 TCTTGTACCA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.40, C:0.46, G:0.01, T:0.12
Consensus pattern (22 bp):
CACCATACAACCACCATATCAA
Found at i:33658103 original size:14 final size:11
Alignment explanation
Indices: 33658072--33658156 Score: 68
Period size: 11 Copynumber: 7.7 Consensus size: 11
33658062 ATTCCACCGA
33658072 ACAACCACCAT
1 ACAACCACCAT
33658083 ACAACCACCAT
1 ACAACCACCAT
33658094 ATCAA-CACCAT
1 A-CAACCACCAT
* *
33658105 TCAACCACCTT
1 ACAACCACCAT
*
33658116 AGC-ACCACCAC
1 A-CAACCACCAT
*
33658127 ACCACCACCAT
1 ACAACCACCAT
*
33658138 ATCAA-AACCAT
1 A-CAACCACCAT
*
33658149 ACCACCAC
1 ACAACCAC
33658157 TCTTGTACCA
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
10 6 0.10
11 46 0.79
12 6 0.10
ACGTcount: A:0.41, C:0.46, G:0.01, T:0.12
Consensus pattern (11 bp):
ACAACCACCAT
Found at i:33666392 original size:35 final size:35
Alignment explanation
Indices: 33666343--33666433 Score: 110
Period size: 35 Copynumber: 2.6 Consensus size: 35
33666333 TTTAACACAG
* * *
33666343 TGGCATGCTAAACATGTGAATCAGAATCAGATTTA
1 TGGCATGCTTAACATGTGAATCAGAATCAGAATAA
* * *
33666378 TGGCATGCTTAACATGCGATTCATAATCAGAATAA
1 TGGCATGCTTAACATGTGAATCAGAATCAGAATAA
* *
33666413 TAGCATGATTAACATGTGAAT
1 TGGCATGCTTAACATGTGAAT
33666434 GGAATATCAA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (35 bp):
TGGCATGCTTAACATGTGAATCAGAATCAGAATAA
Found at i:33667854 original size:4 final size:4
Alignment explanation
Indices: 33667845--33667871 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
33667835 TGAACCAATG
33667845 TAAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAA
33667872 TGTGACGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:33669801 original size:24 final size:25
Alignment explanation
Indices: 33669761--33669807 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
33669751 AAATTTTATG
33669761 AAGTTTTATCTAACAA-TTAGAAAT
1 AAGTTTTATCTAACAATTTAGAAAT
*
33669785 AAGTTTTCAT-TATCAATTTAGAA
1 AAGTTTT-ATCTAACAATTTAGAA
33669808 TGTTTTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (25 bp):
AAGTTTTATCTAACAATTTAGAAAT
Found at i:33669892 original size:29 final size:29
Alignment explanation
Indices: 33669850--33669907 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
33669840 TACCAGTATC
* * *
33669850 TATAGTTTTTAGAATCTAGAGTTTCACAG
1 TATAGTTTTCAGAATCAAAAGTTTCACAG
33669879 TATAGTTTTCAGAATCAAAAGTTTCACAG
1 TATAGTTTTCAGAATCAAAAGTTTCACAG
33669908 CTAATAGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (29 bp):
TATAGTTTTCAGAATCAAAAGTTTCACAG
Found at i:33670737 original size:35 final size:35
Alignment explanation
Indices: 33670646--33670771 Score: 130
Period size: 35 Copynumber: 3.6 Consensus size: 35
33670636 TGACACAATG
* * *
33670646 GCATGCTTAACATGCAAATCAGAATC-AAAT-TTA
1 GCATGCTTAACATGCGAATCATAGTCAAAATATTA
*
33670679 TGGCATGCTTAACATGTGAATCATAGTCAAAATATTA
1 --GCATGCTTAACATGCGAATCATAGTCAAAATATTA
* * * *
33670716 GCATGCTTAACAAGCGAATCATAGTTAGAATAATA
1 GCATGCTTAACATGCGAATCATAGTCAAAATATTA
* *
33670751 GCATGGTTAACATGTGAATCA
1 GCATGCTTAACATGCGAATCA
33670772 GAATATCCAT
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
35 70 0.91
36 4 0.05
37 3 0.04
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (35 bp):
GCATGCTTAACATGCGAATCATAGTCAAAATATTA
Found at i:33672914 original size:48 final size:48
Alignment explanation
Indices: 33672813--33672937 Score: 150
Period size: 48 Copynumber: 2.6 Consensus size: 48
33672803 AAGATGACTT
* * * *
33672813 AAATTTGGTGG-TTTATCCACAACCTACATGTTTTGGGAGTTGTTCTAC
1 AAATTTGGTGGCTTTGTCCACAA-CTATATGTATTGGCAGTTGTTCTAC
* *
33672861 GAATTTGGTGGCTTTGTCCACAACTATATGTATTGGCAGTT-TGTCTGC
1 AAATTTGGTGGCTTTGTCCACAACTATATGTATTGGCAGTTGT-TCTAC
33672909 AAATTTGGTGGCTTTGTCCAC-A-TATATGT
1 AAATTTGGTGGCTTTGTCCACAACTATATGT
33672938 TGGTGTGTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
46 7 0.10
47 2 0.03
48 49 0.72
49 10 0.15
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (48 bp):
AAATTTGGTGGCTTTGTCCACAACTATATGTATTGGCAGTTGTTCTAC
Found at i:33674164 original size:15 final size:15
Alignment explanation
Indices: 33674135--33674171 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
33674125 CTGACACCTG
*
33674135 CAAAG-AGAAACCAA
1 CAAAGCAGAAAACAA
33674149 CAAAGCAGAAAACAA
1 CAAAGCAGAAAACAA
33674164 CAAA-CAGA
1 CAAAGCAGA
33674172 CAATCCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.65, C:0.22, G:0.14, T:0.00
Consensus pattern (15 bp):
CAAAGCAGAAAACAA
Found at i:33676029 original size:106 final size:106
Alignment explanation
Indices: 33675854--33676052 Score: 326
Period size: 106 Copynumber: 1.9 Consensus size: 106
33675844 TCAAAATAAG
* * * * *
33675854 GCAATATTTTACGTTTGGAAATTCGAGAAGACGTGCCCTAACGTGCTGGGTTTCGATTTCTTGTT
1 GCAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTCTCGTA
*
33675919 CGACCAAATAGCCAAATATCCTTTTAAAATTTCAAATCCAA
66 CGACCAAATAGCCAAATATCCTCTTAAAATTTCAAATCCAA
* *
33675960 GCAATATTTTACGTTTAGAAATTCGAGAAAATGTGCCCTAATGTGCTGAGTTTCGATTTCTCGTA
1 GCAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTCTCGTA
33676025 CGACCAAATAGCCAAATATCCTCTTAAA
66 CGACCAAATAGCCAAATATCCTCTTAAA
33676053 TCTCAATCCA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
106 85 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.33
Consensus pattern (106 bp):
GCAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTCTCGTA
CGACCAAATAGCCAAATATCCTCTTAAAATTTCAAATCCAA
Found at i:33678339 original size:53 final size:54
Alignment explanation
Indices: 33678239--33678343 Score: 162
Period size: 53 Copynumber: 2.0 Consensus size: 54
33678229 ATAATGACCG
33678239 AAATACCCTCGATGGGTAAAATGACAGAAATACCCCCATAGGGTAAAATGACTA
1 AAATACCCTCGATGGGTAAAATGACAGAAATACCCCCATAGGGTAAAATGACTA
*
33678293 AAATACCCTCG-TAGGGTAGAAT-ATC-GAAATACCCCCATAGGGTAAAATGAC
1 AAATACCCTCGAT-GGGTAAAATGA-CAGAAATACCCCCATAGGGTAAAATGAC
33678344 CGTAATATCC
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
53 28 0.58
54 20 0.42
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (54 bp):
AAATACCCTCGATGGGTAAAATGACAGAAATACCCCCATAGGGTAAAATGACTA
Found at i:33678360 original size:27 final size:27
Alignment explanation
Indices: 33678231--33678430 Score: 147
Period size: 27 Copynumber: 7.4 Consensus size: 27
33678221 AAAAAAGGAT
*
33678231 AATGACCGAAATA-CCCTCG-ATGGGTAA
1 AATGACCGTAATACCCCT-GTA-GGGTAA
* * **
33678258 AATGACAGAAATACCCCCATAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
*** *
33678285 AATGACTAAAATA-CCCTCGTAGGGTAG
1 AATGACCGTAATACCCCT-GTAGGGTAA
* * **
33678312 AAT-ATCGAAATACCCCCATAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
* *
33678338 AATGACCGTAATATCCTTGTAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
* ** *
33678365 ATTGACCACAATGCCCCTGTAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
* *
33678392 ATTAACCGTAATACCCCTGTAGGGTAA
1 AATGACCGTAATACCCCTGTAGGGTAA
*
33678419 AATGATCGTAAT
1 AATGACCGTAAT
33678431 GCCCTGGTGG
Statistics
Matches: 135, Mismatches: 33, Indels: 10
0.76 0.19 0.06
Matches are distributed among these distances:
26 19 0.14
27 112 0.83
28 4 0.03
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
AATGACCGTAATACCCCTGTAGGGTAA
Found at i:33678387 original size:80 final size:81
Alignment explanation
Indices: 33678235--33678430 Score: 193
Period size: 80 Copynumber: 2.4 Consensus size: 81
33678225 AAGGATAATG
* * * *
33678235 ACCGAAATACCCTCGAT-GGGTAAAATGACAGAAATACCCCCATAGGGTAAAATGACTAAAATAC
1 ACCGAAATACCC-CCATAGGGTAAAATGACCGTAATACCCCCATAGGGTAAAATGACCAAAATAC
33678299 CCTCGTAGGGTAGAA-T-
65 CCTCGTAGGGTA-AATTA
* * *** * * *
33678315 ATCGAAATACCCCCATAGGGTAAAATGACCGTAATATCCTTGTAGGGTAAATTGACCACAATGCC
1 ACCGAAATACCCCCATAGGGTAAAATGACCGTAATACCCCCATAGGGTAAAATGACCAAAATACC
33678380 C-CTGTAGGGTAAATTA
66 CTC-GTAGGGTAAATTA
* ** *
33678396 ACCGTAATACCCCTGTAGGGTAAAATGATCGTAAT
1 ACCGAAATACCCCCATAGGGTAAAATGACCGTAAT
33678431 GCCCTGGTGG
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
79 6 0.06
80 59 0.62
81 30 0.32
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (81 bp):
ACCGAAATACCCCCATAGGGTAAAATGACCGTAATACCCCCATAGGGTAAAATGACCAAAATACC
CTCGTAGGGTAAATTA
Found at i:33678432 original size:54 final size:53
Alignment explanation
Indices: 33678294--33678446 Score: 143
Period size: 54 Copynumber: 2.9 Consensus size: 53
33678284 AAATGACTAA
* * ** * *
33678294 AATACCCTCGTAGGGTAGAAT-ATCGAAATACCCCCATAGGGTAAAATGACCGT
1 AATACCCT-GTAGGGTAAAATGATCGAAATGCCCCTGTAGGGTAAATTAACCGT
* * *
33678347 AATATCCTTGTAGGGTAAATTGA-CCACAATGCCCCTGTAGGGTAAATTAACCGT
1 AATA-CCCTGTAGGGTAAAATGATCGA-AATGCCCCTGTAGGGTAAATTAACCGT
*
33678401 AATACCCCTGTAGGGTAAAATGATCGTAATG-CCCTGGT-GGGTAAAT
1 AATA-CCCTGTAGGGTAAAATGATCGAAATGCCCCT-GTAGGGTAAAT
33678447 GACTATGTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
53 28 0.35
54 52 0.64
55 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (53 bp):
AATACCCTGTAGGGTAAAATGATCGAAATGCCCCTGTAGGGTAAATTAACCGT
Found at i:33678497 original size:23 final size:23
Alignment explanation
Indices: 33678470--33678536 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
33678460 CATCGAGGTC
*
33678470 AAATGATTGTTTTGTCTGTGGTT
1 AAATGATTGATTTGTCTGTGGTT
* * *
33678493 AAATGACTAATTTGTCTGTGTTT
1 AAATGATTGATTTGTCTGTGGTT
**
33678516 AGTGTGATTGATTTGTCTGTG
1 A-AATGATTGATTTGTCTGTG
33678537 ATTTGAATGA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 20 0.57
24 15 0.43
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.49
Consensus pattern (23 bp):
AAATGATTGATTTGTCTGTGGTT
Found at i:33678686 original size:27 final size:27
Alignment explanation
Indices: 33678634--33678686 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
33678624 TGTTGTCTCT
* **
33678634 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAATCACTATTACTGGCAGCTTG
33678661 GCCACATAT-ACTATTACTGGCAGCTT
1 GCCACA-ATCACTATTACTGGCAGCTT
33678687 TGATGCGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 20 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTATTACTGGCAGCTTG
Found at i:33678768 original size:32 final size:32
Alignment explanation
Indices: 33678727--33678899 Score: 149
Period size: 32 Copynumber: 5.4 Consensus size: 32
33678717 ACAATGCTAT
*
33678727 TGATGGCTTTGTGTCGATCATAGTACCGTTAC
1 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
*
33678759 TGATGGCTTTGTGCCGATCATATTACCGTTAC
1 TGATGGCTTTGTGCCGATCATAGTACCGTTAC
* * * * * *
33678791 CGATGGCTATGTGCCGGTCAT-TTCACTGTTAT
1 TGATGGCTTTGTGCCGATCATAGT-ACCGTTAC
33678823 TGATGG-TTGTGTGCCGATCAT-GTTACCGTTAC
1 TGATGGCTT-TGTGCCGATCATAG-TACCGTTAC
* * * *
33678855 TGATGG-TTGTGTGTCAATCATA-TCACTGCTAC
1 TGATGGCTT-TGTGCCGATCATAGT-ACCGTTAC
*
33678887 TGATAGCTTTGTG
1 TGATGGCTTTGTG
33678900 TCAATCACAT
Statistics
Matches: 117, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
31 4 0.03
32 110 0.94
33 3 0.03
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATAGTACCGTTAC
Found at i:33678881 original size:64 final size:63
Alignment explanation
Indices: 33678727--33678899 Score: 188
Period size: 64 Copynumber: 2.7 Consensus size: 63
33678717 ACAATGCTAT
*
33678727 TGATGGCTTTGTGTCGATCATAGT-ACCGTTACTGATGGCTTTGTGCCGATCATATTACCGTTAC
1 TGATGG-TTTGTGTCGATCATA-TCACTGTTACTGATGGCTTTGTGCCGATCATATTACCGTTAC
* * * * * * *
33678791 CGATGGCTATGTGCCGGTCATTTCACTGTTATTGATGG-TTGTGTGCCGATCATGTTACCGTTAC
1 TGATGG-TTTGTGTCGATCATATCACTGTTACTGATGGCTT-TGTGCCGATCATATTACCGTTAC
* * *
33678855 TGATGGTTGTGTGTCAATCATATCACTGCTACTGATAGCTTTGTG
1 TGATGGTT-TGTGTCGATCATATCACTGTTACTGATGGCTTTGTG
33678900 TCAATCACAT
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
63 4 0.05
64 82 0.93
65 2 0.02
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (63 bp):
TGATGGTTTGTGTCGATCATATCACTGTTACTGATGGCTTTGTGCCGATCATATTACCGTTAC
Found at i:33678915 original size:96 final size:96
Alignment explanation
Indices: 33678724--33678915 Score: 203
Period size: 96 Copynumber: 2.0 Consensus size: 96
33678714 GCTACAATGC
* * * *
33678724 TATTGATGGCTTTGTGTCGATCATAGTACCGTTACTGATGGCTTTGTGCCGATCATATTACCGTT
1 TATTGATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGCTTTGTGCCAATCATATCACCGCT
* ** *
33678789 ACCGATGGCTATGTGCCGGTCATTTCACTGT
66 ACCGATAGCTATGTGCCAATCAATTCACTGT
* *
33678820 TATTGATGG-TTGTGTGCCGATCAT-GTTACCGTTACTGATGG-TTGTGTGTCAATCATATCACT
1 TATTGATGGCTT-TGTGCCGATCATAG-TACCGTTACTGATGGCTT-TGTGCCAATCATATCACC
* * *
33678882 GCTACTGATAGCTTTGTGTCAATCACATT-ACTGT
63 GCTACCGATAGCTATGTGCCAATCA-ATTCACTGT
33678916 ACTTATGGCT
Statistics
Matches: 79, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
95 5 0.06
96 72 0.91
97 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (96 bp):
TATTGATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGCTTTGTGCCAATCATATCACCGCT
ACCGATAGCTATGTGCCAATCAATTCACTGT
Found at i:33688900 original size:19 final size:20
Alignment explanation
Indices: 33688863--33688900 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33688853 TCAGTTGCAA
*
33688863 TTTCAAAGAGGATAAAATTC
1 TTTCAAAGAGGACAAAATTC
33688883 TTTCAAAGA-GACAAAATT
1 TTTCAAAGAGGACAAAATT
33688901 ATTCATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (20 bp):
TTTCAAAGAGGACAAAATTC
Found at i:33689993 original size:72 final size:73
Alignment explanation
Indices: 33689903--33690065 Score: 215
Period size: 74 Copynumber: 2.2 Consensus size: 73
33689893 AACCCAAACC
* * *
33689903 CTTTTACTTTCCCCCAAAAATTTAACTTCC-CCCAAAC-CCTAAAACTTTTTTCTTTTTA-CTTT
1 CTTTTAC-TTCCCCCAAAAATTTAACTTCCTCCCAAACTCCCAAAACTTTTTTCTTTTTACCCTC
*
33689965 TCCCTTAAAA
65 TCCC-CAAAA
* *
33689975 CTTTTACTTCCCCTCAAAAATTTTACTTCCTCCCAAACTCCCAGAACTTTTTTCTTTTTACCCTC
1 CTTTTACTTCCCC-CAAAAATTTAACTTCCTCCCAAACTCCCAAAACTTTTTTCTTTTTACCCTC
33690040 TCCCCAAAA
65 TCCCCAAAA
*
33690049 CTTTTACTTCCTCCAAA
1 CTTTTACTTCCCCCAAA
33690066 CCCCAAAAAT
Statistics
Matches: 80, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
71 6 0.08
72 22 0.28
73 11 0.14
74 35 0.44
75 6 0.08
ACGTcount: A:0.26, C:0.34, G:0.01, T:0.40
Consensus pattern (73 bp):
CTTTTACTTCCCCCAAAAATTTAACTTCCTCCCAAACTCCCAAAACTTTTTTCTTTTTACCCTCT
CCCCAAAA
Found at i:33690011 original size:19 final size:19
Alignment explanation
Indices: 33689956--33690004 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
33689946 ACTTTTTTCT
* * *
33689956 TTTTACTTTTCCCTTAAAAC
1 TTTTAC-TTCCCCTCAAAAA
33689976 TTTTACTTCCCCTCAAAAA
1 TTTTACTTCCCCTCAAAAA
33689995 TTTTACTTCC
1 TTTTACTTCC
33690005 TCCCAAACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTTACTTCCCCTCAAAAA
Found at i:33692707 original size:17 final size:16
Alignment explanation
Indices: 33692675--33692705 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
33692665 TCTAATTGAG
33692675 TTGAAATTATTTTTTA
1 TTGAAATTATTTTTTA
33692691 TTGAAATTATTTTTT
1 TTGAAATTATTTTTT
33692706 TACCCTCCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
TTGAAATTATTTTTTA
Found at i:33697991 original size:40 final size:40
Alignment explanation
Indices: 33697947--33698208 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
33697937 GCTCCTCGTT
* *
33697947 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
33697987 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
33698027 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
33698066 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
33698105 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
33698144 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
33698185 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33698209 CATCATTCAA
Statistics
Matches: 204, Mismatches: 9, Indels: 19
0.88 0.04 0.08
Matches are distributed among these distances:
38 2 0.01
39 128 0.63
40 63 0.31
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:33706074 original size:79 final size:78
Alignment explanation
Indices: 33705972--33706194 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
33705962 GCTCCTCGTT
* *
33705972 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
33706037 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
33706052 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
33706115 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
33706130 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
33706193 GA
63 GA
33706195 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:33706089 original size:39 final size:40
Alignment explanation
Indices: 33705972--33706194 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
33705962 GCTCCTCGTT
* *
33705972 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
33706012 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
33706052 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
33706091 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
33706130 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
33706171 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33706195 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:33720532 original size:11 final size:11
Alignment explanation
Indices: 33720516--33720545 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
33720506 CCCATATTAA
33720516 TATTTTTATAT
1 TATTTTTATAT
33720527 TATTTTTATAT
1 TATTTTTATAT
*
33720538 AATTTTTA
1 TATTTTTA
33720546 AATATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TATTTTTATAT
Found at i:33752003 original size:19 final size:17
Alignment explanation
Indices: 33751978--33752026 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
33751968 TAATATTTTG
33751978 TTAATTTAATATTAAAAT
1 TTAATTTAATATT-AAAT
*
33751996 TATTATTTAATATTAAAT
1 T-TAATTTAATATTAAAT
33752014 TTAATTTAATATT
1 TTAATTTAATATT
33752027 TATCTTGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 11 0.39
18 6 0.21
19 11 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTAATTTAATATTAAAT
Found at i:33752015 original size:12 final size:12
Alignment explanation
Indices: 33751978--33752028 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
33751968 TAATATTTTG
33751978 TTAATTTAATAT
1 TTAATTTAATAT
* * *
33751990 TAAAATTATTAT
1 TTAATTTAATAT
33752002 TTAATATTAA-AT
1 TTAAT-TTAATAT
33752014 TTAATTTAATAT
1 TTAATTTAATAT
33752026 TTA
1 TTA
33752029 TCTTGTAGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 4 0.13
12 24 0.77
13 3 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TTAATTTAATAT
Found at i:33752068 original size:61 final size:58
Alignment explanation
Indices: 33752000--33752117 Score: 173
Period size: 61 Copynumber: 2.0 Consensus size: 58
33751990 TAAAATTATT
** *
33752000 ATTTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTTTATTAATTTAATAG
1 ATTTAATATTAAATTTAATCAAATATTTATCTTG-A-A-AAATATTATATTAATTTAATAG
*
33752061 ATTTAATATTAAATTTAATCAAATATTTATCTTGAAAAGTATTATATTAATTTAATA
1 ATTTAATATTAAATTTAATCAAATATTTATCTTGAAAAATATTATATTAATTTAATA
33752118 TTAAAATGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 19 0.36
59 1 0.02
60 1 0.02
61 32 0.60
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (58 bp):
ATTTAATATTAAATTTAATCAAATATTTATCTTGAAAAATATTATATTAATTTAATAG
Found at i:33752137 original size:58 final size:60
Alignment explanation
Indices: 33752004--33752139 Score: 163
Period size: 58 Copynumber: 2.3 Consensus size: 60
33751994 ATTATTATTT
** * *
33752004 AATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTTTATTAATTTAATAGATTT
1 AATATTAAATTTAATCAAATATTTATCTTGTAGATAAATATTATATTAATTTAATA-ATTA
*
33752065 AATATTAAATTTAATCAAATATTTATCTTG-A-A-AAGTATTATATTAATTTAAT-ATTAA
1 AATATTAAATTTAATCAAATATTTATCTTGTAGATAAATATTATATTAATTTAATAATT-A
*
33752122 AATGATTAAGTTTAATCA
1 AAT-ATTAAATTTAATCA
33752140 TAGTTAAACT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
56 3 0.04
57 3 0.04
58 31 0.46
59 1 0.01
60 1 0.01
61 28 0.42
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (60 bp):
AATATTAAATTTAATCAAATATTTATCTTGTAGATAAATATTATATTAATTTAATAATTA
Found at i:33761655 original size:291 final size:291
Alignment explanation
Indices: 33761131--33761721 Score: 1173
Period size: 291 Copynumber: 2.0 Consensus size: 291
33761121 TTTCACTTGA
33761131 GAGATTAACAGAGTTGTATGTAGCTGAGATCGTTAGATTGCACGGTGTGCTAGTTTCTATTATTT
1 GAGATTAACAGAGTTGTATGTAGCTGAGATCGTTAGATTGCACGGTGTGCTAGTTTCTATTATTT
33761196 TTTATAGAGATTTGTGGTTTACGTCTCGATTCTAGAGCAAGTTATATGAAACTCTAGGTAATCGA
66 TTTATAGAGATTTGTGGTTTACGTCTCGATTCTAGAGCAAGTTATATGAAACTCTAGGTAATCGA
33761261 TTGTATTTTAGTACCGCATTTCATCCTTAGACCGACAGTCAATCTGAGCAAGTAACTCAGATACT
131 TTGTATTTTAGTACCGCATTTCATCCTTAGACCGACAGTCAATCTGAGCAAGTAACTCAGATACT
33761326 TGAGGATATGCTTTGATGTTGTGTTTTGGAGTTCGAAGGTAACTGGGAGAGATTTCTACTGTTAG
196 TGAGGATATGCTTTGATGTTGTGTTTTGGAGTTCGAAGGTAACTGGGAGAGATTTCTACTGTTAG
33761391 TTGAATTTGCATACAACAATAGTTATCAATC
261 TTGAATTTGCATACAACAATAGTTATCAATC
33761422 GAGATTAACAGAGTTGTATGTAGCTGAGATCGTTAGATTGCACGGTGTGCTAGTTTCTATTATTT
1 GAGATTAACAGAGTTGTATGTAGCTGAGATCGTTAGATTGCACGGTGTGCTAGTTTCTATTATTT
33761487 TTTATAGAGATTTGTGGTTTACGTCTCGATTCTAGAGCAAGTTATATGAAACTCTAGGTAATCGA
66 TTTATAGAGATTTGTGGTTTACGTCTCGATTCTAGAGCAAGTTATATGAAACTCTAGGTAATCGA
33761552 TTGTATTTTAGTACCGCATTTCATCCTTAGACCGACAGTCAATCTGAGCAAGTAACTCAGATACT
131 TTGTATTTTAGTACCGCATTTCATCCTTAGACCGACAGTCAATCTGAGCAAGTAACTCAGATACT
33761617 TGAGGATATGCTTTGATGTTGTGTTTTGGAGTTCGAAGGTAACTGGGAGAGATTTCTACTGTTAG
196 TGAGGATATGCTTTGATGTTGTGTTTTGGAGTTCGAAGGTAACTGGGAGAGATTTCTACTGTTAG
33761682 TTGAATTTGCATACAACAATAGTTATCAATC
261 TTGAATTTGCATACAACAATAGTTATCAATC
33761713 GAGCATTAA
1 GAG-ATTAA
33761722 AATGGCATAG
Statistics
Matches: 299, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
291 294 0.98
292 5 0.02
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (291 bp):
GAGATTAACAGAGTTGTATGTAGCTGAGATCGTTAGATTGCACGGTGTGCTAGTTTCTATTATTT
TTTATAGAGATTTGTGGTTTACGTCTCGATTCTAGAGCAAGTTATATGAAACTCTAGGTAATCGA
TTGTATTTTAGTACCGCATTTCATCCTTAGACCGACAGTCAATCTGAGCAAGTAACTCAGATACT
TGAGGATATGCTTTGATGTTGTGTTTTGGAGTTCGAAGGTAACTGGGAGAGATTTCTACTGTTAG
TTGAATTTGCATACAACAATAGTTATCAATC
Found at i:33764574 original size:30 final size:30
Alignment explanation
Indices: 33764540--33764596 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
33764530 ACGGCCTGAG
*
33764540 ACACGGGC-ATGTGACTCAGTCATGTGTTAC
1 ACAC-GGCAATGTGACACAGTCATGTGTTAC
*
33764570 ACACGGCAATGTGACACGGTCATGTGT
1 ACACGGCAATGTGACACAGTCATGTGT
33764597 CCCATGTAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (30 bp):
ACACGGCAATGTGACACAGTCATGTGTTAC
Found at i:33766043 original size:13 final size:13
Alignment explanation
Indices: 33766025--33766049 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33766015 TTATATATTA
33766025 CATTGTAAATAGG
1 CATTGTAAATAGG
33766038 CATTGTAAATAG
1 CATTGTAAATAG
33766050 CATATATGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (13 bp):
CATTGTAAATAGG
Found at i:33782623 original size:17 final size:17
Alignment explanation
Indices: 33782603--33782642 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
33782593 AGAAGAGTCT
* *
33782603 GCCAAACCCTAGAGTTC
1 GCCAAAACCTAGAGCTC
*
33782620 GCCAAAATCTAGAGCTC
1 GCCAAAACCTAGAGCTC
33782637 GCCAAA
1 GCCAAA
33782643 TGGCAAATCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.33, G:0.17, T:0.15
Consensus pattern (17 bp):
GCCAAAACCTAGAGCTC
Found at i:33787963 original size:5 final size:5
Alignment explanation
Indices: 33787955--33788012 Score: 62
Period size: 5 Copynumber: 11.6 Consensus size: 5
33787945 TATTTTTTTT
* * * ** *
33787955 CATTC CATTC CATCC CATTC CATTC CATAC CATTT CATTC CATAG CATTT
1 CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC
33788005 CATTC CAT
1 CATTC CAT
33788013 CAAGCATTCA
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.24, C:0.36, G:0.02, T:0.38
Consensus pattern (5 bp):
CATTC
Found at i:33787975 original size:15 final size:15
Alignment explanation
Indices: 33787955--33788012 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
33787945 TATTTTTTTT
*
33787955 CATTCCATTCCATCC
1 CATTCCATTCCATAC
33787970 CATTCCATTCCATAC
1 CATTCCATTCCATAC
* *
33787985 CATTTCATTCCATAG
1 CATTCCATTCCATAC
*
33788000 CATTTCATTCCAT
1 CATTCCATTCCAT
33788013 CAAGCATTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.24, C:0.36, G:0.02, T:0.38
Consensus pattern (15 bp):
CATTCCATTCCATAC
Found at i:33793449 original size:6 final size:6
Alignment explanation
Indices: 33793438--33793463 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
33793428 GGTCGCAACC
33793438 TTTCCT TTTCCT TTTCCT TTTCCT TT
1 TTTCCT TTTCCT TTTCCT TTTCCT TT
33793464 ACATCGTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTCCT
Found at i:33799588 original size:74 final size:74
Alignment explanation
Indices: 33799457--33799603 Score: 195
Period size: 74 Copynumber: 2.0 Consensus size: 74
33799447 GTGAAAATAA
** * * *
33799457 TATCAACTGCTCGTTTGAGTTAATCAAAAACAATAGTGTTTGGTTACCCATTCGGGTTAAACCTA
1 TATCAACTGCTCGACTGAGCTAATCAAAAACAATAGTGCTTCGTTACCCATTCGGGTTAAACCTA
33799522 CACAACAAT
66 CACAACAAT
* * * ** *
33799531 TATCAATTGCTCGACTGAGCTATTCATAAACAATAGTGCTTCGTTACTTATTTGGGTTAAACCTA
1 TATCAACTGCTCGACTGAGCTAATCAAAAACAATAGTGCTTCGTTACCCATTCGGGTTAAACCTA
33799596 CACAACAA
66 CACAACAA
33799604 ATAGTCTGGC
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
74 62 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32
Consensus pattern (74 bp):
TATCAACTGCTCGACTGAGCTAATCAAAAACAATAGTGCTTCGTTACCCATTCGGGTTAAACCTA
CACAACAAT
Found at i:33809529 original size:33 final size:33
Alignment explanation
Indices: 33809492--33809570 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
33809482 CTCTTCTGTA
* *
33809492 TTTACTATCCCAGTGGA-CTATTTCTATTCTATG
1 TTTACTATCCCAAT-GATCTATCTCTATTCTATG
*
33809525 TTTACTATCCCAATGATCTATCTCTGTTCTATG
1 TTTACTATCCCAATGATCTATCTCTATTCTATG
*
33809558 TTTACTGTCCCAA
1 TTTACTATCCCAA
33809571 CAGACTATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 2 0.05
33 39 0.95
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (33 bp):
TTTACTATCCCAATGATCTATCTCTATTCTATG
Found at i:33812498 original size:27 final size:27
Alignment explanation
Indices: 33812453--33812524 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
33812443 GGTGAAATCT
* *
33812453 GGGTAAAATGATCGAAATACCCTCGTA-A
1 GGGTAAAATGACCGTAATACCC-C-TATA
33812481 -GGTAAAATGACCGTAATACCCCTATA
1 GGGTAAAATGACCGTAATACCCCTATA
*
33812507 GGGTAAAATGACCATAAT
1 GGGTAAAATGACCGTAAT
33812525 GCTTTTGTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
25 2 0.05
26 2 0.05
27 35 0.90
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATACCCCTATA
Found at i:33812862 original size:32 final size:32
Alignment explanation
Indices: 33812791--33812865 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
33812781 TGCTGCGATG
* *
33812791 TACTGATGGCTTTGTGCCGATCACAGTACAAT
1 TACTGATGGCTTTGTACCGATCACAATACAAT
* * * **
33812823 TATTGATGGCTTTGTACTGATCATAATACCGT
1 TACTGATGGCTTTGTACCGATCACAATACAAT
33812855 TACTGATGGCT
1 TACTGATGGCT
33812866 GTGTGCTAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (32 bp):
TACTGATGGCTTTGTACCGATCACAATACAAT
Found at i:33812889 original size:32 final size:33
Alignment explanation
Indices: 33812853--33812935 Score: 89
Period size: 32 Copynumber: 2.6 Consensus size: 33
33812843 TCATAATACC
* *
33812853 GTTACTGATGGCTGTGTGCT-AATCATTTCATT
1 GTTACTGATGGCTGTGTGCTCAATCATATCACT
* * *
33812885 GTTACTGGTGGTTGTGTG-TCGATCATATCACT
1 GTTACTGATGGCTGTGTGCTCAATCATATCACT
* *
33812917 GCTACTGATGGCTTTGTGC
1 GTTACTGATGGCTGTGTGC
33812936 CAAACACATT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
31 1 0.03
32 39 0.98
ACGTcount: A:0.16, C:0.17, G:0.27, T:0.41
Consensus pattern (33 bp):
GTTACTGATGGCTGTGTGCTCAATCATATCACT
Found at i:33812978 original size:22 final size:21
Alignment explanation
Indices: 33812953--33813017 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
33812943 ATTAATGTAC
33812953 TTATGGCTTGTAGCCATTCTGT
1 TTATGGCTT-TAGCCATTCTGT
* * *
33812975 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTT-TAGCCATTCTGT
*
33812997 TTACGGCTCTTAGCCATTCTG
1 TTATGGCT-TTAGCCATTCTG
33813018 ACTATTGGTA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (21 bp):
TTATGGCTTTAGCCATTCTGT
Found at i:33827370 original size:26 final size:26
Alignment explanation
Indices: 33827341--33827391 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
33827331 CGGAGAGCAG
*
33827341 TTAAACAGGATGCTCACAAAGAGCCT
1 TTAAACAGGAAGCTCACAAAGAGCCT
* * *
33827367 TTAATCGGGAAGCTCACGAAGAGCC
1 TTAAACAGGAAGCTCACAAAGAGCC
33827392 ATATAACGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (26 bp):
TTAAACAGGAAGCTCACAAAGAGCCT
Found at i:33827401 original size:26 final size:26
Alignment explanation
Indices: 33827352--33827408 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
33827342 TAAACAGGAT
*
33827352 GCTCACAAAGAGCCTTTAATCGGGAA
1 GCTCACAAAGAGCCTATAATCGGGAA
* *
33827378 GCTCACGAAGAGCCATATAA-CGGGAC
1 GCTCACAAAGAGCC-TATAATCGGGAA
33827404 GCTCA
1 GCTCA
33827409 TAAGAGGTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.33, C:0.26, G:0.25, T:0.16
Consensus pattern (26 bp):
GCTCACAAAGAGCCTATAATCGGGAA
Found at i:33827885 original size:5 final size:5
Alignment explanation
Indices: 33827856--33827895 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
33827846 TAAATTTAAC
* *
33827856 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCAA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCAA
33827896 ATCTTAGGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (5 bp):
TCAAT
Found at i:33839167 original size:15 final size:17
Alignment explanation
Indices: 33839147--33839182 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
33839137 TATTCTATTA
33839147 CTTTTTCA-TTTCT-TC
1 CTTTTTCATTTTCTCTC
33839162 CTTTTTCATTTTCTCTC
1 CTTTTTCATTTTCTCTC
33839179 CTTT
1 CTTT
33839183 ATGAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 5 0.26
17 6 0.32
ACGTcount: A:0.06, C:0.28, G:0.00, T:0.67
Consensus pattern (17 bp):
CTTTTTCATTTTCTCTC
Found at i:33839775 original size:17 final size:17
Alignment explanation
Indices: 33839744--33839791 Score: 80
Period size: 17 Copynumber: 2.9 Consensus size: 17
33839734 GAATTTAGAA
*
33839744 GAATTTT-TGAATTAGT
1 GAATTTTGTGATTTAGT
33839760 GAATTTTGTGATTTAGT
1 GAATTTTGTGATTTAGT
33839777 GAATTTTGTGATTTA
1 GAATTTTGTGATTTA
33839792 AAAAGAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 7 0.23
17 23 0.77
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (17 bp):
GAATTTTGTGATTTAGT
Found at i:33841078 original size:45 final size:46
Alignment explanation
Indices: 33841010--33841194 Score: 291
Period size: 46 Copynumber: 4.0 Consensus size: 46
33841000 CTATGGAAAA
* *
33841010 TTGTGAAAATTAGGTATGATGTTTCAGTGAAGAAAGCCATACTGAG
1 TTGTGAAAAGTAGGTATGATGTTTCAGTGAAGAAAACCATACTGAG
* *
33841056 TTGTGAAAAGTA-GTATGGTGTTTCAATGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGATGTTTCAGTGAAGAAAACCATACTGAG
*
33841101 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGATGTTTCAGTGAAGAAAACCATACTGAG
* * *
33841147 TTGTGAAAAGTAGGTACGATATTTCAGTGAAGGAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGATGTTTCAGTGAAGAAAACCATACTGAG
33841193 TT
1 TT
33841195 ATAGCATTGT
Statistics
Matches: 129, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
45 42 0.33
46 87 0.67
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGATGTTTCAGTGAAGAAAACCATACTGAG
Found at i:33845619 original size:48 final size:48
Alignment explanation
Indices: 33845546--33845741 Score: 248
Period size: 48 Copynumber: 4.1 Consensus size: 48
33845536 AGATTTCTCA
* * * * * ** * *
33845546 GTGGCCTACACATAGTCCATACCACCTTTGTGTAATAACAGACTCTCG
1 GTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATCG
* *
33845594 GTGGCCTACACAAAGTCCGTGCCACCCTTGTATCTTAACAGAATATTG
1 GTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATCG
* *
33845642 GTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATTG
1 GTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATCG
* * *
33845690 GTGGCCTGCACACAGTCCGTGCCACCCTTATATCTTAACAGAATATTG
1 GTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATCG
33845738 GTGG
1 GTGG
33845742 TCTGCACTTA
Statistics
Matches: 135, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 135 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (48 bp):
GTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATCG
Found at i:33845747 original size:48 final size:48
Alignment explanation
Indices: 33845593--33845757 Score: 276
Period size: 48 Copynumber: 3.4 Consensus size: 48
33845583 ACAGACTCTC
* *
33845593 GGTGGCCTACACAAAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
1 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
33845641 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
1 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
*
33845689 GGTGGCCTGCACACAGTCCGTGCCACCCTTATATCTTAACAGAATATT
1 GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
* **
33845737 GGTGGTCTGCACTTAGTCCGT
1 GGTGGCCTGCACACAGTCCGT
33845758 ACTACACGTG
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (48 bp):
GGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCTTAACAGAATATT
Found at i:33854148 original size:6 final size:6
Alignment explanation
Indices: 33854137--33854180 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
33854127 GTCGAAAAAT
33854137 AATCCC AATCCC AATCCC AATCCC AATCCC AATCCC AATCCC AA
1 AATCCC AATCCC AATCCC AATCCC AATCCC AATCCC AATCCC AA
33854181 ATGCAAATGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (6 bp):
AATCCC
Found at i:33854611 original size:21 final size:21
Alignment explanation
Indices: 33854586--33854653 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
33854576 GTCTAGACCG
33854586 TGTGATAAGGGTACAGGGCTA
1 TGTGATAAGGGTACAGGGCTA
** * *** *
33854607 TGTGATTGGGGCACAAACCCA
1 TGTGATAAGGGTACAGGGCTA
33854628 TGTGATAAGGGTACAGGGCTA
1 TGTGATAAGGGTACAGGGCTA
33854649 TGTGA
1 TGTGA
33854654 CTGGGGCACA
Statistics
Matches: 33, Mismatches: 14, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.28, C:0.13, G:0.35, T:0.24
Consensus pattern (21 bp):
TGTGATAAGGGTACAGGGCTA
Found at i:33854645 original size:42 final size:42
Alignment explanation
Indices: 33854586--33854674 Score: 160
Period size: 42 Copynumber: 2.1 Consensus size: 42
33854576 GTCTAGACCG
*
33854586 TGTGATAAGGGTACAGGGCTATGTGATTGGGGCACAAACCCA
1 TGTGATAAGGGTACAGGGCTATGTGACTGGGGCACAAACCCA
*
33854628 TGTGATAAGGGTACAGGGCTATGTGACTGGGGCACAAACCCG
1 TGTGATAAGGGTACAGGGCTATGTGACTGGGGCACAAACCCA
33854670 TGTGA
1 TGTGA
33854675 GTGAGGGACA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.27, C:0.17, G:0.35, T:0.21
Consensus pattern (42 bp):
TGTGATAAGGGTACAGGGCTATGTGACTGGGGCACAAACCCA
Found at i:33854694 original size:42 final size:42
Alignment explanation
Indices: 33854586--33854698 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
33854576 GTCTAGACCG
* * *
33854586 TGTGATAAGGGTACAGGGCTATGTGATTGGGGCACAAACCCA
1 TGTGATAAGGGTACAGGACCATGTGACTGGGGCACAAACCCA
* * *
33854628 TGTGATAAGGGTACAGGGCTATGTGACTGGGGCACAAACCCG
1 TGTGATAAGGGTACAGGACCATGTGACTGGGGCACAAACCCA
* *
33854670 TGTGAGTGAGGG-ACATGACCATGTGACTG
1 TGTGA-TAAGGGTACAGGACCATGTGACTG
33854699 AGAGACAAGC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 59 0.92
43 5 0.08
ACGTcount: A:0.27, C:0.17, G:0.35, T:0.21
Consensus pattern (42 bp):
TGTGATAAGGGTACAGGACCATGTGACTGGGGCACAAACCCA
Found at i:33854734 original size:21 final size:19
Alignment explanation
Indices: 33854667--33854736 Score: 50
Period size: 21 Copynumber: 3.4 Consensus size: 19
33854657 GGGCACAAAC
* *
33854667 CCGTGTGAGTGAGGGACATGA
1 CCGTGTGACTGA-GGACA-GG
* *
33854688 CCATGTGACTGAGAGACAAG
1 CCGTGTGACTGAG-GACAGG
33854708 CTCGTGTGACTGAGGTACACGG
1 C-CGTGTGACTGAGG-ACA-GG
33854730 CCGTGTG
1 CCGTGTG
33854737 GGTAGGCTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
20 3 0.08
21 34 0.87
22 2 0.05
ACGTcount: A:0.23, C:0.20, G:0.37, T:0.20
Consensus pattern (19 bp):
CCGTGTGACTGAGGACAGG
Found at i:33859116 original size:12 final size:12
Alignment explanation
Indices: 33859098--33859132 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
33859088 TTGAAGGCAT
33859098 CAAAACTCCATA
1 CAAAACTCCATA
* *
33859110 TAAAACTCCAAA
1 CAAAACTCCATA
33859122 CAAAACTCCAT
1 CAAAACTCCAT
33859133 TTCTAATCCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.17
Consensus pattern (12 bp):
CAAAACTCCATA
Found at i:33862107 original size:14 final size:15
Alignment explanation
Indices: 33862085--33862119 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
33862075 ACAACTAAAA
*
33862085 CTTTGTTTTTC-TTT
1 CTTTTTTTTTCTTTT
33862099 CTTTTTTTTTCTTTT
1 CTTTTTTTTTCTTTT
33862114 CTTTTT
1 CTTTTT
33862120 AAAACAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (15 bp):
CTTTTTTTTTCTTTT
Found at i:33869669 original size:46 final size:46
Alignment explanation
Indices: 33869537--33869704 Score: 142
Period size: 46 Copynumber: 3.7 Consensus size: 46
33869527 TTCATATTCA
* * * *
33869537 TGTATTCTCGAGTTCACAACATATGAAGGAACTCGGAACCTAATCC
1 TGTATTCTCGAGTTCACAACATATGCAGGAACTTGAAACCTAATCT
* * * * * * *
33869583 CGTACTCTTGAGTCCACAACATATGCAAGAGC-TCAGAACCTAATCT
1 TGTATTCTCGAGTTCACAACATATGCAGGAACTTGA-AACCTAATCT
* * *
33869629 TGTATTCTCGAG-TCTGCAACATATGCAGGATCTTGAAACCTATTCT
1 TGTATTCTCGAGTTC-ACAACATATGCAGGAACTTGAAACCTAATCT
* * * *
33869675 TGTATTCTTGGGTTCGCAACATATGTAGGA
1 TGTATTCTCGAGTTCACAACATATGCAGGA
33869705 GCTCAGAACC
Statistics
Matches: 95, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
45 1 0.01
46 90 0.95
47 4 0.04
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (46 bp):
TGTATTCTCGAGTTCACAACATATGCAGGAACTTGAAACCTAATCT
Found at i:33869695 original size:92 final size:92
Alignment explanation
Indices: 33869537--33869714 Score: 214
Period size: 92 Copynumber: 1.9 Consensus size: 92
33869527 TTCATATTCA
*
33869537 TGTATTCTCGAGTTCACAACATATGAAGGAACTCGGAACCTAATCCCGTACTCTTGAGTCCACAA
1 TGTATTCTCGAGTTCACAACATATGAAGGAACTCGAAACCTAATCCCGTACTCTTGAGTCCACAA
33869602 CATATGCAAGAGCTCAGAACCTAATCT
66 CATATGCAAGAGCTCAGAACCTAATCT
* * * * * ** * * * *
33869629 TGTATTCTCGAG-TCTGCAACATATGCAGGATCTTGAAACCTATTCTTGTATTCTTGGGTTCGCA
1 TGTATTCTCGAGTTC-ACAACATATGAAGGAACTCGAAACCTAATCCCGTACTCTTGAGTCCACA
* *
33869693 ACATATGTAGGAGCTCAGAACC
65 ACATATGCAAGAGCTCAGAACC
33869715 AGGGCAAACT
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
91 2 0.03
92 69 0.97
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (92 bp):
TGTATTCTCGAGTTCACAACATATGAAGGAACTCGAAACCTAATCCCGTACTCTTGAGTCCACAA
CATATGCAAGAGCTCAGAACCTAATCT
Found at i:33874021 original size:9 final size:9
Alignment explanation
Indices: 33874007--33874037 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
33873997 GTTAAACGAA
33874007 TCGAGTTAT
1 TCGAGTTAT
*
33874016 TCGAGTTAA
1 TCGAGTTAT
33874025 TCGAGTTAT
1 TCGAGTTAT
33874034 TCGA
1 TCGA
33874038 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:33874201 original size:30 final size:31
Alignment explanation
Indices: 33874167--33874227 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
33874157 AAACCTTTTT
* *
33874167 ACTTTTCCCTCAAAACTTTTACT-CCTTCCC
1 ACTTTCCCCCCAAAACTTTTACTCCCTTCCC
33874197 ACTTTCCCCCCAAAACTTTTACTCCCTTCCC
1 ACTTTCCCCCCAAAACTTTTACTCCCTTCCC
33874228 CTCCCAACCC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 21 0.75
31 7 0.25
ACGTcount: A:0.20, C:0.44, G:0.00, T:0.36
Consensus pattern (31 bp):
ACTTTCCCCCCAAAACTTTTACTCCCTTCCC
Found at i:33883926 original size:28 final size:27
Alignment explanation
Indices: 33883895--33883949 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
33883885 AAAAATAATT
*
33883895 AAAATTCAA-TATGTTAATAATTTAAGTG
1 AAAATT-AATTAT-TTAATAATTAAAGTG
*
33883923 AAAATTAATTATTTTATAATTAAAGTG
1 AAAATTAATTATTTAATAATTAAAGTG
33883950 TGAATTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (27 bp):
AAAATTAATTATTTAATAATTAAAGTG
Found at i:33885353 original size:19 final size:19
Alignment explanation
Indices: 33885329--33885367 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
33885319 ACAATATTTC
33885329 CCAAGGTGATACACTCGGT
1 CCAAGGTGATACACTCGGT
33885348 CCAAGGTGATACACTCGGT
1 CCAAGGTGATACACTCGGT
33885367 C
1 C
33885368 TATTGGTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (19 bp):
CCAAGGTGATACACTCGGT
Found at i:33887131 original size:16 final size:17
Alignment explanation
Indices: 33887100--33887132 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33887090 GCAGATAAAA
*
33887100 TTTCATATACTTTCACC
1 TTTCACATACTTTCACC
33887117 TTTCACATA-TTTCACC
1 TTTCACATACTTTCACC
33887133 CCATGCATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.24, C:0.30, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTCACATACTTTCACC
Found at i:33887524 original size:4 final size:4
Alignment explanation
Indices: 33887515--33887548 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
33887505 AAAAGAAAAG
*
33887515 GAAA GAAA GAAA GAAA GAAA GAAA -AGA GAAA GAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA
33887549 GAATGCACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
3 2 0.07
4 25 0.93
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:33888680 original size:18 final size:18
Alignment explanation
Indices: 33888657--33888704 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
33888647 ATGGCAAAGT
* *
33888657 TGAGAAATGAATATGAGA
1 TGAGAAATGAATATAAAA
33888675 TGAGAAATGAAATATAAAA
1 TGAGAAATG-AATATAAAA
33888694 TGATGAAATGA
1 TGA-GAAATGA
33888705 GATGTGAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 9 0.35
19 11 0.42
20 6 0.23
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (18 bp):
TGAGAAATGAATATAAAA
Found at i:33898217 original size:50 final size:48
Alignment explanation
Indices: 33898163--33898300 Score: 125
Period size: 48 Copynumber: 2.8 Consensus size: 48
33898153 TGTAAGTATG
* * * *
33898163 TGGCAGTTTATTTGCAAATAAATTGTGGTTTGTCCACAAAGTGTTATCAA
1 TGGCAGTTTATCTGC--ATAAATGGTGGCTTGTCCACAAAGTGCTATCAA
* * ** *
33898213 TGGCAATATATCTGCATATGTGGTGGCTTGTCCACAAAGTGCTATCAG
1 TGGCAGTTTATCTGCATAAATGGTGGCTTGTCCACAAAGTGCTATCAA
* *
33898261 TGGCAGTTTATCTACA-AATCAGTGGTGGCTTGTCTACAAA
1 TGGCAGTTTATCTGCATAA--A-TGGTGGCTTGTCCACAAA
33898301 TGGAGTTTCG
Statistics
Matches: 70, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
47 1 0.01
48 40 0.57
50 29 0.41
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (48 bp):
TGGCAGTTTATCTGCATAAATGGTGGCTTGTCCACAAAGTGCTATCAA
Found at i:33898245 original size:48 final size:49
Alignment explanation
Indices: 33898187--33898300 Score: 140
Period size: 48 Copynumber: 2.3 Consensus size: 49
33898177 CAAATAAATT
* * * *
33898187 GTGGTTTGTCCACAAAGTGTTATCAATGGCAATATATCTGCATAT-GTG
1 GTGGCTTGTCCACAAAGTGCTATCAATGGCAATATATCTACAAATAGTG
* * *
33898235 GTGGCTTGTCCACAAAGTGCTATCAGTGGCAGTTTATCTACAAATCAGTG
1 GTGGCTTGTCCACAAAGTGCTATCAATGGCAATATATCTACAAAT-AGTG
*
33898285 GTGGCTTGTCTACAAA
1 GTGGCTTGTCCACAAA
33898301 TGGAGTTTCG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 38 0.68
50 18 0.32
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (49 bp):
GTGGCTTGTCCACAAAGTGCTATCAATGGCAATATATCTACAAATAGTG
Found at i:33907652 original size:9 final size:10
Alignment explanation
Indices: 33907629--33907654 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
33907619 CCATAATTAT
33907629 TTTTTTACAA
1 TTTTTTACAA
33907639 TTTTTTACAA
1 TTTTTTACAA
33907649 TTTTTT
1 TTTTTT
33907655 CAAAGTCAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTTACAA
Found at i:33907945 original size:37 final size:37
Alignment explanation
Indices: 33907895--33907977 Score: 166
Period size: 37 Copynumber: 2.2 Consensus size: 37
33907885 CTTTCATAAT
33907895 TTCACTTTTTCACTTTCAATCACAATTCAATTCAAAA
1 TTCACTTTTTCACTTTCAATCACAATTCAATTCAAAA
33907932 TTCACTTTTTCACTTTCAATCACAATTCAATTCAAAA
1 TTCACTTTTTCACTTTCAATCACAATTCAATTCAAAA
33907969 TTCACTTTT
1 TTCACTTTT
33907978 CCATTTCTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.43
Consensus pattern (37 bp):
TTCACTTTTTCACTTTCAATCACAATTCAATTCAAAA
Found at i:33908035 original size:23 final size:22
Alignment explanation
Indices: 33907992--33908035 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
33907982 TTCTAAGTCG
33907992 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
33908015 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
33908036 TTAGTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:33908197 original size:51 final size:49
Alignment explanation
Indices: 33908134--33908320 Score: 205
Period size: 51 Copynumber: 3.7 Consensus size: 49
33908124 TCGGTTCACA
* * *
33908134 TAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATCCGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCG-TACACG
* * * *
33908185 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCCGTACACA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCAT-CCGTACACG
* * * * *
33908236 TAGTAGCCTGTACATAGTACTACATATGCGACC-TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCC-GTACACG
33908286 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
33908321 CATTTTCACT
Statistics
Matches: 111, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
49 4 0.04
50 37 0.33
51 65 0.59
52 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCGTACACG
Found at i:33908308 original size:101 final size:101
Alignment explanation
Indices: 33908130--33908316 Score: 286
Period size: 101 Copynumber: 1.8 Consensus size: 101
33908120 ATGTTCGGTT
* * *
33908130 CACATAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATCCGATACATGTAGTAGCCTG
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTG
33908195 CACATAGTACTACACACGTGATCGAAACTATCCCGTA
65 CACATAGTACTACACACGTGATCGAAACTATCCCGTA
* * * *
33908232 CACATAGTAGCCTGTACATAGTACTACATATGCGACC-TATCATTCCGGTACACGTAGTAGCCTG
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTG
33908296 CACATAGTACTACACACGTGA
65 CACATAGTACTACACACGTGA
33908317 CCATCATTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
100 4 0.05
101 40 0.52
102 33 0.43
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (101 bp):
CACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTGC
ACATAGTACTACACACGTGATCGAAACTATCCCGTA
Found at i:33910326 original size:23 final size:24
Alignment explanation
Indices: 33910291--33910336 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
33910281 AATTTGAATC
*
33910291 ATTTGACATTAAACAGAAATATTT
1 ATTTGACATTAAACAAAAATATTT
*
33910315 ATTTGA-ATTAAATAAAAATATT
1 ATTTGACATTAAACAAAAATATT
33910337 CAAATACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.50, C:0.04, G:0.07, T:0.39
Consensus pattern (24 bp):
ATTTGACATTAAACAAAAATATTT
Found at i:33920673 original size:33 final size:33
Alignment explanation
Indices: 33920609--33920675 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
33920599 AAGTAGAGAG
* *
33920609 ACTAAATTCTTGAAAATAAAAGTATAGGGACTA
1 ACTAAATTCTTGAAAATAAAAATACAGGGACTA
* *
33920642 ACTAAATT-TTTAAAAGTAAAAATACATGGACTA
1 ACTAAATTCTTGAAAA-TAAAAATACAGGGACTA
33920675 A
1 A
33920676 ATTCTAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 6 0.21
33 23 0.79
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (33 bp):
ACTAAATTCTTGAAAATAAAAATACAGGGACTA
Found at i:33920950 original size:14 final size:14
Alignment explanation
Indices: 33920912--33920950 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
33920902 AATAATTTAT
33920912 TATATGATTAAATA
1 TATATGATTAAATA
* *
33920926 TAAATAATTAAATA
1 TATATGATTAAATA
*
33920940 TATATGTTTAA
1 TATATGATTAA
33920951 TAATATTTAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (14 bp):
TATATGATTAAATA
Found at i:33920991 original size:28 final size:28
Alignment explanation
Indices: 33920923--33920991 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 28
33920913 ATATGATTAA
*
33920923 ATATAAATA-ATTAAA-TATATATGTTT
1 ATATTAATATATTAAATTATATATGTTT
33920949 A-A-TAATAT-TTAAAATTATAATAT-TTT
1 ATATTAATATATT-AAATTAT-ATATGTTT
33920975 ATATTAATATATTAAAT
1 ATATTAATATATTAAAT
33920992 ATTTAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
24 6 0.17
25 4 0.11
26 8 0.23
27 5 0.14
28 10 0.29
29 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (28 bp):
ATATTAATATATTAAATTATATATGTTT
Found at i:33923693 original size:43 final size:43
Alignment explanation
Indices: 33923645--33923869 Score: 290
Period size: 43 Copynumber: 5.3 Consensus size: 43
33923635 TTACTTTTGT
*
33923645 AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
* * ** * *
33923688 AAACGCCATTAAAGATCATGTTCTTTAGCGACGCTCCTTGCTC
1 AAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
* * * **
33923731 AAACGCCGCTAAAGATCATGTCCTTTAGTGGCGCTCCTTCCAC
1 AAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
*
33923774 AAACGCCTCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
* * * *
33923817 AAACGCCGCTAAAGATCATGTTCTTTAGTGGAGC-TTTTACAC
1 AAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
33923859 AAACGCCACTA
1 AAACGCCACTA
33923870 TTTTGTTTGT
Statistics
Matches: 158, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 17 0.11
43 141 0.89
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (43 bp):
AAACGCCACTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
Found at i:33924236 original size:21 final size:21
Alignment explanation
Indices: 33924210--33924258 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
33924200 TTTGCTCTGC
*
33924210 TCTGCTTCCCTCGCTG-CAGCA
1 TCTGCTTCCCTCGATGCCA-CA
*
33924231 TCTGCTTCTCTCGATGCCACA
1 TCTGCTTCCCTCGATGCCACA
33924252 TCTGCTT
1 TCTGCTT
33924259 TAAGTTGTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.10, C:0.39, G:0.16, T:0.35
Consensus pattern (21 bp):
TCTGCTTCCCTCGATGCCACA
Found at i:33924343 original size:87 final size:87
Alignment explanation
Indices: 33924224--33924385 Score: 245
Period size: 87 Copynumber: 1.9 Consensus size: 87
33924214 CTTCCCTCGC
*
33924224 TGCAGCATCTGCTTCTCTCGATGCCACATCTGCTTTAAGTTGTACCTGGAGTTCTTCATATTTCT
1 TGCAGCATCTGCTTCTCTCGATGCCACATCTGCTTTAAGTTGTACCTGGAGTTCTTCATATTTCC
33924289 TTTGAACCTCTACTTCTTTCGT
66 TTTGAACCTCTACTTCTTTCGT
* * * * **
33924311 TGCAGCCTCTGCTTC-CGTCGCTGCCGCCTCTGCTTTAAGTTGTAGTTGGAGTTCTTCATATTTC
1 TGCAGCATCTGCTTCTC-TCGATGCCACATCTGCTTTAAGTTGTACCTGGAGTTCTTCATATTTC
33924375 CTTTGAACCTC
65 CTTTGAACCTC
33924386 AACTGTGGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
86 1 0.01
87 66 0.99
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.41
Consensus pattern (87 bp):
TGCAGCATCTGCTTCTCTCGATGCCACATCTGCTTTAAGTTGTACCTGGAGTTCTTCATATTTCC
TTTGAACCTCTACTTCTTTCGT
Found at i:33926182 original size:19 final size:19
Alignment explanation
Indices: 33926146--33926183 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
33926136 GGAAAGGGCA
* *
33926146 AAGTTATGTATTATGAAAT
1 AAGTTATGTAATACGAAAT
33926165 AAGTTATGTAATACGAAAT
1 AAGTTATGTAATACGAAAT
33926184 TTTATCTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.16, T:0.37
Consensus pattern (19 bp):
AAGTTATGTAATACGAAAT
Found at i:33926210 original size:20 final size:20
Alignment explanation
Indices: 33926185--33926228 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
33926175 ATACGAAATT
33926185 TTATCTTAATATTATATAAC
1 TTATCTTAATATTATATAAC
*
33926205 TTATCTTAATATTATATAAG
1 TTATCTTAATATTATATAAC
33926225 TTAT
1 TTAT
33926229 GTAATTAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (20 bp):
TTATCTTAATATTATATAAC
Found at i:33926246 original size:37 final size:37
Alignment explanation
Indices: 33926205--33926298 Score: 153
Period size: 32 Copynumber: 2.7 Consensus size: 37
33926195 ATTATATAAC
33926205 TTATCTTAATATTATATAAGTTATGTAATTAGAAATT
1 TTATCTTAATATTATATAAGTTATGTAATTAGAAATT
33926242 TTATCTTAATA-T-TAT---TTATGTAATTAGAAATT
1 TTATCTTAATATTATATAAGTTATGTAATTAGAAATT
33926274 TTATCTTAATATTATATAAGTTATG
1 TTATCTTAATATTATATAAGTTATG
33926299 AAGTATCCTG
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
32 28 0.54
33 1 0.02
34 3 0.06
35 3 0.06
36 1 0.02
37 16 0.31
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.51
Consensus pattern (37 bp):
TTATCTTAATATTATATAAGTTATGTAATTAGAAATT
Found at i:33926635 original size:30 final size:30
Alignment explanation
Indices: 33926590--33926678 Score: 81
Period size: 30 Copynumber: 3.0 Consensus size: 30
33926580 ATGTTTAACT
* *
33926590 AAATTTTTGTAAGTTATCTAAAATTAAACA
1 AAATTGTTGAAAGTTATCTAAAATTAAACA
* ** * *
33926620 AAATATGTT-AAAGTTATGTAAGTTTTAACT
1 AAAT-TGTTGAAAGTTATCTAAAATTAAACA
* *
33926650 AAATTTTTGTAAGTTATCTAAAATTAAAC
1 AAATTGTTGAAAGTTATCTAAAATTAAAC
33926679 TTAAAAATAA
Statistics
Matches: 44, Mismatches: 13, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
29 3 0.07
30 38 0.86
31 3 0.07
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.42
Consensus pattern (30 bp):
AAATTGTTGAAAGTTATCTAAAATTAAACA
Found at i:33930388 original size:14 final size:15
Alignment explanation
Indices: 33930371--33930399 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33930361 TCTATAACCC
33930371 TAAACCCTAA-GTCT
1 TAAACCCTAACGTCT
33930385 TAAACCCTAACGTCT
1 TAAACCCTAACGTCT
33930400 AACCTCTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.34, C:0.31, G:0.07, T:0.28
Consensus pattern (15 bp):
TAAACCCTAACGTCT
Found at i:33931356 original size:114 final size:111
Alignment explanation
Indices: 33931040--33931371 Score: 400
Period size: 114 Copynumber: 2.9 Consensus size: 111
33931030 ACGGCCGGAT
* *
33931040 CATTAGCGGCGCTTTTCACAAAACGCCGCTAAAGGCCCAAAAACAT-AGAAAACGGCGTTGTTGG
1 CATTAGCGGCGCTTTTCA-AAAACGCCGCTAAAGGCCAAAAAAC-TCAGAAAACGGCGTCGTTGG
* * *
33931104 CCTTAGGTTTTTTTGCGGCGCTTTTCAGAAAACGCCACTAAAGACAAGAG
64 CCTTAGG-TTTTTTGCGGCGCTTTTTAGAAATCGCCGCT-AAGACAAGAG
* *
33931154 CATTAGCGTCGCTTTTCAAAAAACGCCGC-AACAGG-GACAAAAACTCAGAAAACGGCGTCGTTG
1 CATTAGCGGCGCTTTTC-AAAAACGCCGCTAA-AGGCCA-AAAAACTCAGAAAACGGCGTCGTTG
* * **
33931217 GCTTTAGGTTTTTTGCGGCGCTTTTTAGAAATCGCCGCTAAGTCCCCCGAG
63 GCCTTAGGTTTTTTGCGGCGCTTTTTAGAAATCGCCGCTAAG--ACAAGAG
* * *
33931268 CATTAGCGGCGTTTTTCTAAAAACGCCGCTAGAGGCCAAAAAACTCAGAAAATGGCGTCGTTGGC
1 CATTAGCGGCGCTTTTC-AAAAACGCCGCTAAAGGCCAAAAAACTCAGAAAACGGCGTCGTTGGC
* * *
33931333 CTTATGTTTTTTGCGACGCTTTTTATAAATCGCCGCTAA
65 CTTAGGTTTTTTGCGGCGCTTTTTAGAAATCGCCGCTAA
33931372 TGCTTATTAT
Statistics
Matches: 189, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
112 3 0.02
113 31 0.16
114 152 0.80
115 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (111 bp):
CATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGGCCAAAAAACTCAGAAAACGGCGTCGTTGGCC
TTAGGTTTTTTGCGGCGCTTTTTAGAAATCGCCGCTAAGACAAGAG
Found at i:33931406 original size:39 final size:40
Alignment explanation
Indices: 33931358--33931452 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
33931348 ACGCTTTTTA
*
33931358 TAAAT-CGCCGCTAATGCT-TAT-TATTAGCGGCGTTTTCC
1 TAAATGCGCCGCTAATGCTCGATCT-TTAGCGGCGTTTTCC
* **
33931396 TAAATGCGCCGCTAATTCTCGATCTTTAGCGGCGTTTTTG
1 TAAATGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCC
* *
33931436 TAGATGCGCTGCTAATG
1 TAAATGCGCCGCTAATG
33931453 TTCAAATTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
38 5 0.11
39 12 0.26
40 29 0.62
41 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (40 bp):
TAAATGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCC
Found at i:33934384 original size:29 final size:29
Alignment explanation
Indices: 33934351--33934427 Score: 129
Period size: 29 Copynumber: 2.7 Consensus size: 29
33934341 TATATATATT
33934351 ATTCGGTCCATCCCCATTTCTCTTTAAAC
1 ATTCGGTCCATCCCCATTTCTCTTTAAAC
33934380 ATTCGGTCCATCCCCATTTCTCTTTAAAC
1 ATTCGGTCCATCCCCATTTCTCTTTAAAC
*
33934409 ATTCTGAT-CATCCCCATTT
1 ATTC-GGTCCATCCCCATTT
33934428 ATATATATTA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
29 44 0.96
30 2 0.04
ACGTcount: A:0.21, C:0.34, G:0.06, T:0.39
Consensus pattern (29 bp):
ATTCGGTCCATCCCCATTTCTCTTTAAAC
Found at i:33940721 original size:41 final size:40
Alignment explanation
Indices: 33940665--33940792 Score: 211
Period size: 41 Copynumber: 3.1 Consensus size: 40
33940655 AGACAAATTA
*
33940665 AAAGCCTGAGCATTAGCGGCTCTTTTTCAAAAACGCCGCT
1 AAAGCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCT
*
33940705 AAAGCCTTGAGCATTAGCGGCGCTTTTTCAAAAACACCGCT
1 AAAGCC-TGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCT
*
33940746 AAAAGCCTGAGAATTAGCGGCGCTTTTTCAAAAACGCCGCT
1 -AAAGCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCT
33940787 AAAGCC
1 AAAGCC
33940793 CCAAAAGGTC
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
40 12 0.15
41 64 0.78
42 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
AAAGCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCT
Found at i:33943878 original size:16 final size:16
Alignment explanation
Indices: 33943857--33943888 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
33943847 GAGTTTATTT
33943857 TAGCATAATTTAACTA
1 TAGCATAATTTAACTA
33943873 TAGCATAATTTAACTA
1 TAGCATAATTTAACTA
33943889 GCCTGGGGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (16 bp):
TAGCATAATTTAACTA
Found at i:33961782 original size:27 final size:27
Alignment explanation
Indices: 33961665--33961791 Score: 112
Period size: 27 Copynumber: 4.7 Consensus size: 27
33961655 CACGACAGTG
*
33961665 AAGAATAGCCTTTGTGGCAAATTATGA
1 AAGAATAGCCTTTGTGGCAAACTATGA
* ** *
33961692 AAGAATAACCTTTGTGGTGAACTCTGA
1 AAGAATAGCCTTTGTGGCAAACTATGA
* * *
33961719 AAGAATAACCTTAGTGGCAAACTCTGA
1 AAGAATAGCCTTTGTGGCAAACTATGA
* *
33961746 AAGGGAT-GCCTTTGTGGCAAATTATGA
1 AA-GAATAGCCTTTGTGGCAAACTATGA
* * * *
33961773 ATGGATTGCCTTAGTGGCA
1 AAGAATAGCCTTTGTGGCA
33961792 TACTCTATCT
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.05
27 76 0.92
28 3 0.04
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.28
Consensus pattern (27 bp):
AAGAATAGCCTTTGTGGCAAACTATGA
Found at i:33967510 original size:3 final size:3
Alignment explanation
Indices: 33967502--33967539 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
33967492 ATCTTCTCTA
*
33967502 TTC TTC TTC TTC TTC TTC TT- TATC TTC ATC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC TTC TTC TT
33967540 TAGTTATTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 1 0.03
3 29 0.94
4 1 0.03
ACGTcount: A:0.05, C:0.29, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Done.