Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 117 of 214
Found at i:35584013 original size:3 final size:3
Alignment explanation
Indices: 35584007--35584037 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
35583997 TCTTCTTCTT
35584007 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA C
1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA C
35584038 CCATCTAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (3 bp):
CTA
Found at i:35584514 original size:29 final size:29
Alignment explanation
Indices: 35584398--35584506 Score: 141
Period size: 29 Copynumber: 3.8 Consensus size: 29
35584388 CATTAGTGAT
*
35584398 CAAAACATAATAAATTAAAGTTCAATAAC
1 CAAAACATAATAAATTAAAGTTCAATGAC
* *
35584427 CAAAACATAATAAATTAAAGTCCAATGAT
1 CAAAACATAATAAATTAAAGTTCAATGAC
* *
35584456 CAAAATGA-AATAAATTAAAGTTCAAAGAC
1 CAAAA-CATAATAAATTAAAGTTCAATGAC
35584485 CAAAACGA-AATAAATTAAAGTT
1 CAAAAC-ATAATAAATTAAAGTT
35584507 TAGTGACCTA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
29 69 0.99
30 1 0.01
ACGTcount: A:0.58, C:0.12, G:0.07, T:0.23
Consensus pattern (29 bp):
CAAAACATAATAAATTAAAGTTCAATGAC
Found at i:35586411 original size:12 final size:13
Alignment explanation
Indices: 35586386--35586415 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
35586376 TGGGCTATAA
35586386 TTATTGCATTTAT
1 TTATTGCATTTAT
35586399 TTATTGC-TTTAT
1 TTATTGCATTTAT
35586411 TTATT
1 TTATT
35586416 CATGTATGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (13 bp):
TTATTGCATTTAT
Found at i:35597527 original size:11 final size:10
Alignment explanation
Indices: 35597513--35597549 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
35597503 GAAAAACCAT
35597513 AAAAAAAGAA
1 AAAAAAAGAA
35597523 AAAAAAAGAA
1 AAAAAAAGAA
*
35597533 AAAAAAACAA
1 AAAAAAAGAA
35597543 CAAAAAA
1 -AAAAAA
35597550 CCAGCAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 19 0.76
11 6 0.24
ACGTcount: A:0.89, C:0.05, G:0.05, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:35612895 original size:6 final size:7
Alignment explanation
Indices: 35612878--35612907 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
35612868 AAAGTCGCCC
35612878 TTTTTTA
1 TTTTTTA
35612885 TTTTTTA
1 TTTTTTA
35612892 TTTTATTA
1 TTTT-TTA
35612900 TTTTTTA
1 TTTTTTA
35612907 T
1 T
35612908 ATTATGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTA
Found at i:35612902 original size:15 final size:15
Alignment explanation
Indices: 35612878--35612918 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
35612868 AAAGTCGCCC
35612878 TTTT-TTATTTTTTA
1 TTTTATTATTTTTTA
35612892 TTTTATTATTTTTTA
1 TTTTATTATTTTTTA
*
35612907 TATTATGTATTT
1 TTTTAT-TATTT
35612919 AATATATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 4 0.17
15 15 0.62
16 5 0.21
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (15 bp):
TTTTATTATTTTTTA
Found at i:35614047 original size:44 final size:44
Alignment explanation
Indices: 35613755--35614833 Score: 557
Period size: 44 Copynumber: 23.9 Consensus size: 44
35613745 GATTCATCGT
* * ** *
35613755 TTTAAT-TCGCTCCACTGCAACTTCAAGGAGATAGGATTAATAGC
1 TTTAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * *
35613799 TTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTGGTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * **
35613843 TTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* *
35613887 TTTAATATGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-T-G--TATC
* * *
35613936 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTTATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--TGTATC
* * * * *
35613982 TTTAA-CTTGTTCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTC
1 TTTAATC-TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* *
35614026 TTTAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGTTTATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG--TATC
* * * *
35614072 TTTAACCTGTTCCACTGCAGCTTCAGGGAGATAAGGTTTG-A--
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * * * *
35614113 TATGATTTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-----TAT--C
* * **
35614164 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTATC
* * * * * * * *
35614209 TTCAGTCTGTTCCATTGTAGCTTCAGGGAGATAAGACTTGTAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * *
35614253 TTCAACCTGCTCCACTGCAACTTCTGAGAGATAAGGTTTG---C
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * * * *
35614294 TATGATCTGTTCTACTGTAACTTCAGAGAGATAAGATCTGAAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T----TGTAT--C
* * * * * *
35614345 TTCAATATGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATC
** * * * * * * *
35614390 TCCAGTCTGTTCTACTGCAGCTTCAAGGAGATAAGACTTGTAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * *
35614434 TTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGGTTTG---C
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * ** * *
35614475 TATGATTTGCTCTACTGCAACTTCAAAGAGATAATATCTGCAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGAT-A-A---G--ATTTGTATC
* ** * * * *
35614526 TTCAATCTATTCCAATACAACTTCAGGGAAATAAGATTCGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATC
* * * *
35614571 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * *
35614615 TTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTG---C
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
* * * * * *
35614656 TATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCAGTAATTTATAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT---T--TGTAT--C
* ** * * * *
35614707 TTCAATCTATTCCATTGCAACTTTAGGGAAATAAGATTCGCTATC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TATC
* * * * * * **
35614752 TTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTAGTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
*
35614796 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
35614834 CGCCATGATG
Statistics
Matches: 773, Mismatches: 207, Indels: 110
0.71 0.19 0.10
Matches are distributed among these distances:
41 111 0.14
42 2 0.00
43 2 0.00
44 284 0.37
45 134 0.17
46 76 0.10
47 11 0.01
48 6 0.01
49 38 0.05
50 2 0.00
51 107 0.14
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTATC
Found at i:35614048 original size:139 final size:134
Alignment explanation
Indices: 35613766--35614830 Score: 482
Period size: 137 Copynumber: 7.9 Consensus size: 134
35613756 TTAATTCGCT
* * ** * *
35613766 CCACTGCAACTTCAAGGAGATAGGA-TT-AATAGCTTCAATCTGCTCCACTGTAACTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
35613829 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATA
66 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATA
*
35613894 TGCT
131 TGCC
*
35613898 CCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATCTTCAATCTGCTCCACTGCAACTTCAGG
1 CCACTGCAACTTCAGGGAGATAAGATTTGT---CTATCTTCAATCTGCTCCACTGCAACTTCAGG
* * * * * * *
35613963 GAGATAAGATTGGTTTATTTTTAACTTGTTCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTCTT
63 GAGATAAGATTGG--TATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTT
*
35614028 TAATCTGCC
126 TAATATGCC
* * * * * *
35614037 CCACTGCAACTTCAGGGAGATAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * * ** * * * * * *
35614102 ATAAGGTTTG-AT-AT-GATTTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTTATAGC
66 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG----G---TTTGTGGC
* **
35614164 TTTAATCTGTT
124 TTTAATATGCC
* ** * * * * *
35614175 CCACTGCAACTTCAGGGAAATAAGA-TTCACTATCTTCAGTCTGTTCCATTGTAGCTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * * *
35614239 ATAAGACTT-GTAACTTCAACCTGCTCCACTGCAACTTCTGAGAGATAAGG-TT-T-GCTATGAT
66 ATAAGA-TTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAAT
* **
35614300 CTGTT
130 ATGCC
* * * * * * *
35614305 CTACTGTAACTTCAGAGAGATAAGATCTGAAATTTATAGCTTCAATATGTTCCACTGCAACTTCA
1 CCACTGCAACTTCAGGGAGATAAGATTTG---TCTAT--CTTCAATCTGCTCCACTGCAACTTCA
* * * * ** * * * * ** **
35614370 GGAAAATAAGATTCGCTATCTCCAGTCTGTTCTACTGCAGCTTCAAGGAGATAAGACTTGTAACT
61 GGGAGATAAGATT-GGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCT
* ** *
35614435 TCAACCTGCT
125 TTAATATGCC
* * * * * **
35614445 CCATTGCAACTTCAGGGAGATAAGGTTTG-CTA---T-GATTTGCTCTACTGCAACTTCAAAGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * ** * * * * * **
35614505 ATAATATCTGCAATTTATAGCTTCAATCTATTCCAATACAACTTCAGGGAAATAAGATTCGCTAT
66 ATAAGAT-TG----GTAT--CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG-TGG
* * * *
35614570 CTTCAGTCTGCT
123 CTTTAATATGCC
* * * *
35614582 CCACTGCAACTTCAGGGAGATAAGACTTG--TAGCTTCAACCTACTCCACTGCAACTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * * * * * * * *
35614645 ATAAGGTT--T-GCTAT-GATCTGCTCTACTGTAACTTCAGAGAGATAAGATCAGTAATTTATAG
66 ATAAGATTGGTATCT-TCAACCTGCTCCACTGCAACTTCAGGGAGATAAG----G---TTTGTGG
* * ***
35614706 CTTCAATCTATT
123 CTTTAATATGCC
* * * * * * *
35614718 CCATTGCAACTTTAGGGAAATAAGATTCG-CTATCTTCAGTCTGCTCCACTGTAACTTCAGAGAG
1 CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
* * ** *
35614782 ATAAGACTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
66 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
35614831 ATTCGCCATG
Statistics
Matches: 707, Mismatches: 172, Indels: 100
0.72 0.18 0.10
Matches are distributed among these distances:
130 83 0.12
131 28 0.04
132 25 0.04
133 5 0.01
134 6 0.01
135 3 0.00
136 137 0.19
137 181 0.26
138 43 0.06
139 85 0.12
140 111 0.16
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (134 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGTCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATA
TGCC
Found at i:35614058 original size:90 final size:89
Alignment explanation
Indices: 35613809--35614787 Score: 392
Period size: 92 Copynumber: 10.8 Consensus size: 89
35613799 TTCAATCTGC
* * * *
35613809 TCCACTGTAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
* * *** *
35613874 TAAGGTT-TGTGGCTTTAA-TATGC
66 TAAGATTGTTTATTTTTAACT-TGT
*
35613897 TCCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATCTTCAATCTGCTCCACTGCAACTTCAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGT-G----TCTTCAATCTGCTCCACTGCAACTTCAG
35613962 GGAGATAAGATTGGTTTATTTTTAACTTGT
61 GGAGATAAGATT-GTTTATTTTTAACTTGT
* * * * *
35613992 TCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTCTTTAATCTGCCCCACTGCAACTTCAGGGAGA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
*
35614057 TAAGATTTGTTTATTTTTAACCTGT
66 TAAGA-TTGTTTATTTTTAACTTGT
* * * * * * * * * *
35614082 TCCACTGCAGCTTCAGGGAGATAAGGTTTG-AT-AT-GATTTGCTCTACTGTAACTTCAGAGATA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
*
35614144 TAAGATTTGTAATTTATAGCTTTAA-TCTGT
66 TAAGA-TTG---TTTAT--TTTTAACT-TGT
* ** * * * * * *
35614174 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGTTCCATTGTAGCTTCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATT-TGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * * *
35614239 ATAAGACTTG--TAACTTCAACCTGC
65 ATAAGA-TTGTTTATTTTTAACTTGT
* * * * * * * *
35614263 TCCACTGCAACTTCTGAGAGATAAG-GTT-TG-CTAT-GATCTGTTCTACTGTAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCT-TCAATCTGCTCCACTGCAACTTCAGGGAG
* *
35614324 ATAAGATCTGAAATTTATAGCTTCAA-TATGT
65 ATAAGAT-TG---TTTAT--TTTTAACT-TGT
* * * * * * * * * *
35614355 TCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTCCAGTCTGTTCTACTGCAGCTTCAAGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * * *
35614420 ATAAGACTTG--TAACTTCAACCTGC
65 ATAAGA-TTGTTTATTTTTAACTTGT
* * * * * **
35614444 TCCATTGCAACTTCAGGGAGATAAG-GTT-TG-CTAT-GATTTGCTCTACTGCAACTTCAAAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCT-TCAATCTGCTCCACTGCAACTTCAGGGAG
* * * *
35614505 ATAATATCTGCAATTTATAGCTTCAA-TCTAT
65 ATAAGAT-TG---TTTAT--TTTTAACT-TGT
* * * * * *
35614536 TCCAATACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
** * * **
35614601 ATAAGACTTG--TAGCTTCAACCTAC
65 ATAAGA-TTGTTTATTTTTAACTTGT
* * * * *
35614625 TCCACTGCAACTTCAGGGAGATAAG-GTT-TG-CTAT-GATCTGCTCTACTGTAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCT-TCAATCTGCTCCACTGCAACTTCAGGGAG
* * * *
35614686 ATAAGATCAGTAATTTATAGCTTCAA-TCTAT
65 ATAAGAT---T-GTTTAT--TTTTAACT-TGT
* * * * * * * *
35614717 TCCATTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGTAACTTCAGAGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TGTCTTCAATCTGCTCCACTGCAACTTCAGGGAG
35614782 ATAAGA
65 ATAAGA
35614788 CTAGTGGCTT
Statistics
Matches: 681, Mismatches: 141, Indels: 130
0.72 0.15 0.14
Matches are distributed among these distances:
84 3 0.00
85 91 0.13
86 5 0.01
87 31 0.05
88 32 0.05
89 90 0.13
90 90 0.13
91 8 0.01
92 121 0.18
93 41 0.06
94 3 0.00
95 43 0.06
96 121 0.18
97 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (89 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTGTCTTCAATCTGCTCCACTGCAACTTCAGGGAGA
TAAGATTGTTTATTTTTAACTTGT
Found at i:35614189 original size:92 final size:91
Alignment explanation
Indices: 35613940--35614787 Score: 483
Period size: 92 Copynumber: 9.4 Consensus size: 91
35613930 CCTATCTTCA
* * * * * * * *
35613940 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-GTTTAT--TTTTAACTTGTTCCAGTGCA
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGCA
** * * *
35614001 ACTTCAGGGGGATAAGGTTTGTGTCTTTA
66 ACTTCAGGGAAATAAGG-TT-TG-ATATG
* * * * * *
35614030 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTG--TTTAT--TTTTAACCTGTTCCACTGCA
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGCA
* *
35614091 GCTTCAGGGAGATAAGGTTTGATATG
66 ACTTCAGGGAAATAAGGTTTGATATG
* * * *
35614117 ATTTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGC
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTG-AATTTATAGCTTCAACCTGTTCCACTGC
* * *
35614182 AACTTCAGGGAAATAAGATTCACT-ATCTTC
65 AACTTCAGGGAAATAAGGTT---TGAT-ATG
* * * * * * *
35614212 AGTCTGTTCCATTGTAGCTTCAGGGAGATAAGACTTG----TA-A-CTTCAACCTGCTCCACTGC
1 A-TCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGC
* * * *
35614271 AACTTCTGAGAGATAAGGTTTGCTATG
65 AACTTCAGGGAAATAAGGTTTGATATG
* * **
35614298 ATCTGTTCTACTGTAACTTCAGAGAGATAAGATCTGAAATTTATAGCTTCAATATGTTCCACTGC
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTG-AATTTATAGCTTCAACCTGTTCCACTGC
* * * * *
35614363 AACTTCAGGAAAATAAGATTCGCTATCTCC
65 AACTTCAGGGAAATAAGGTTTG--ATAT-G
* * * * * *
35614393 AGTCTGTTCTACTGCAGCTTCA-AGGAGATAAGACTTG----TA-A-CTTCAACCTGCTCCATTG
1 A-TCTGCTCTACTGTAACTTCAGA-GAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTG
* *
35614451 CAACTTCAGGGAGATAAGGTTTGCTATG
64 CAACTTCAGGGAAATAAGGTTTGATATG
* * * * * * * * *
35614479 ATTTGCTCTACTGCAACTTCAAAGAGATAATATCTGCAATTTATAGCTTCAATCTATTCCAATAC
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTG-AATTTATAGCTTCAACCTGTTCCACTGC
* * * *
35614544 AACTTCAGGGAAATAAGATTCGCTATCTTC
65 AACTTCAGGGAAATAAGGTTTG--AT-ATG
* * * * **
35614574 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG------TAGCTTCAACCTACTCCACTGC
1 A-TCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGC
* *
35614633 AACTTCAGGGAGATAAGGTTTGCTATG
65 AACTTCAGGGAAATAAGGTTTGATATG
** * * *
35614660 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATCAGTAATTTATAGCTTCAATCTATTCCATTGC
1 ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTG-AATTTATAGCTTCAACCTGTTCCACTGC
* * * * *
35614725 AACTTTAGGGAAATAAGATTCGCTATCTTC
65 AACTTCAGGGAAATAAGGTTTG--AT-ATG
*
35614755 AGTCTGCTCCACTGTAACTTCAGAGAGATAAGA
1 A-TCTGCTCTACTGTAACTTCAGAGAGATAAGA
35614788 CTAGTGGCTT
Statistics
Matches: 588, Mismatches: 123, Indels: 88
0.74 0.15 0.11
Matches are distributed among these distances:
85 85 0.14
86 7 0.01
87 36 0.06
88 2 0.00
89 104 0.18
90 80 0.14
91 9 0.02
92 136 0.23
94 6 0.01
95 9 0.02
96 114 0.19
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (91 bp):
ATCTGCTCTACTGTAACTTCAGAGAGATAAGATTTGAATTTATAGCTTCAACCTGTTCCACTGCA
ACTTCAGGGAAATAAGGTTTGATATG
Found at i:35614222 original size:227 final size:228
Alignment explanation
Indices: 35613765--35614292 Score: 548
Period size: 227 Copynumber: 2.3 Consensus size: 228
35613755 TTTAATTCGC
* * * * * *
35613765 TCCACTGCAACTTCAAGGAGATAGGA-TTAATAGCTTCAATCTGCTCCACTGTAACTTCAGGGAG
1 TCCAGTGCAACTTCAGGGAGATAAGACTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGGGAG
* *
35613829 ATAAGA-TTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAAT
65 ATAAGATTTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGATATAAT
* * *
35613893 ATGCTCCATTGCAACTTCAGGGAGATAAGATTTGTAGCCTATCTTCAATCTGCTCCACTGCAACT
130 ATGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACCTATCTTCAATCTGCTCCACTGCAACT
* *** * *
35613958 TCAGGGAGATAAGATTGGTTTATTTTTAACTTGT
195 TCAGGGAAATAAGATTGCACTATCTTCAACTTGT
* ** ** * *
35613992 TCCAGTGCAACTTCAGGGGGATAAGGTTTGTGTCTTTAATCTGCCCCACTGCAACTTCAGGGAGA
1 TCCAGTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGA
* * * * * *
35614057 TAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGGGAGATAAGG-TT-T-GATATGAT
66 TAAGATTTG-GTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGATATAAT
* * * * ** * *
35614119 TTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAA
130 ATGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACCTAT--CTTCAATCTGCTCCACTGCAA
*
35614184 CTTCAGGGAAATAAGATT-CACTATCTTC-AGTCTGT
193 CTTCAGGGAAATAAGATTGCACTATCTTCAACT-TGT
* * * * * *
35614219 TCCATTGTAGCTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCTGAGAGA
1 TCCAGTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGA
*
35614284 TAAGGTTTG
66 TAAGATTTG
35614293 CTATGATCTG
Statistics
Matches: 244, Mismatches: 51, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
226 40 0.16
227 125 0.51
228 43 0.18
229 36 0.15
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (228 bp):
TCCAGTGCAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGA
TAAGATTTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGATATAATA
TGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACCTATCTTCAATCTGCTCCACTGCAACTT
CAGGGAAATAAGATTGCACTATCTTCAACTTGT
Found at i:35614290 original size:181 final size:181
Alignment explanation
Indices: 35613794--35614830 Score: 1190
Period size: 181 Copynumber: 5.7 Consensus size: 181
35613784 GATAGGATTA
** * * * **
35613794 ATAGCTTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGATT-GGTATCTTCAACCTGCTCCAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
** ** * ** *
35613858 TGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATATGCTCCATTGCAACTTCAGGGAGATAAGA
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG-
* * * * * *
35613923 TTTGTAGCCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TG--GTTT
130 GTT-T-G-CTA---T-GATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * * * ** * * * * * *
35613979 AT--TTTTAA-CTTGTTCCAGTGCAACTTCAGGGGGATAAGGTTTG-TGTCTTTAATCTGCCCCA
1 ATAGCTTCAATC-TATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCA
* ** * * *
35614040 CTGCAACTTCAGGGAGATAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGGGAGATA
65 CTGCAACTTCAGGGAGATAAGACTTG--TAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
35614105 AGGTTTGATATGATTTGCTCTACTGTAACTTCAGAGATATAAGATTTGTAATTT
128 AGGTTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * * * *
35614159 ATAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGTTCCAT
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * * *
35614224 TGTAGCTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCTGAGAGATAAGG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
* *
35614289 TTTGCTATGATCTGTTCTACTGTAACTTCAGAGAGATAAGATCTGAAATTT
131 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* * * * * *
35614340 ATAGCTTCAATATGTTCCACTGCAACTTCAGGAAAATAAGATTCGCTATCTCCAGTCTGTTCTAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * *
35614405 TGCAGCTTCAAGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGAGATAAGG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
* * * * *
35614470 TTTGCTATGATTTGCTCTACTGCAACTTCAAAGAGATAATATCTGCAATTT
131 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* *
35614521 ATAGCTTCAATCTATTCCAATACAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* *
35614586 TGCAACTTCAGGGAGATAAGACTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
*
35614651 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCAGTAATTT
131 TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
* *
35614702 ATAGCTTCAATCTATTCCATTGCAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
1 ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
* * * ** *
35614767 TGTAACTTCAGAGAGATAAGACTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
66 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
35614831 ATTCGCCATG
Statistics
Matches: 737, Mismatches: 104, Indels: 26
0.85 0.12 0.03
Matches are distributed among these distances:
177 28 0.04
178 3 0.00
180 5 0.01
181 525 0.71
182 34 0.05
183 106 0.14
184 3 0.00
185 33 0.04
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (181 bp):
ATAGCTTCAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCAC
TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
TTTGCTATGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCTGTAATTT
Found at i:35614468 original size:89 final size:88
Alignment explanation
Indices: 35613763--35614836 Score: 516
Period size: 89 Copynumber: 11.9 Consensus size: 88
35613753 GTTTTAATTC
* * * * * *
35613763 GCTCCACTGCAACTTCAAGGAGATAGGA-TTAATAGCTTCAATCTGCTCCACTGTAACTTCAGGG
1 GCTCTACTGTAACTTCAAGGAGATAAGACTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * **
35613827 AGATAAGATT-GGTATCTTCAACCT
65 AAATAAGATTCGCTATC-TCAGTCT
* * * ** ** * * *
35613851 GCTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATATGCTCCATTGCAACTTCAGGGA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* * *
35613916 GATAAGATTTGTAGCCTATCTTCAATCT
66 AATAAGA--T-TCG-CTATC-TCAGTCT
* * * ** * * *
35613944 GCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTTTATTTTTAA-CTTGTTCCAGTGCAACTTCA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTT-G--TAACTTCAATC-TGCTCCACTGCAACTTCA
** * * * * *
35614007 GGGGGATAAGGTTTG-TGTCTTTAATCT
62 GGGAAATAAGATTCGCTATC-TCAGTCT
* * * * * ** * * * *
35614034 GCCCCACTGCAACTTCAGGGAGATAAGATTTGTTTATTTTTAACCTGTTCCACTGCAGCTTCAGG
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTG--TAACTTCAATCTGCTCCACTGCAACTTCAGG
* * * * * *
35614099 GAGATAAGGTTTG--ATATGA-TTT
64 GAAATAAGATTCGCTATCTCAGTCT
* * * *
35614121 GCTCTACTGTAACTTC-AGAGATATAAGATTTGTAATTTATAGCTTTAATCTGTTCCACTGCAAC
1 GCTCTACTGTAACTTCAAG-GAGATAAGACTTG-----TA-A-CTTCAATCTGCTCCACTGCAAC
*
35614185 TTCAGGGAAATAAGATTCACTATCTTCAGTCT
58 TTCAGGGAAATAAGATTCGCTATC-TCAGTCT
* * * * * * * *
35614217 GTTCCATTGTAGCTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCCACTGCAACTTCTGAGA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* * * *
35614282 GATAAGGTTTGCTA--TGA-TCT
66 AATAAGATTCGCTATCTCAGTCT
* * * *
35614302 GTTCTACTGTAACTTC-AGAGAGATAAGATCTGAAATTTATAGCTTCAATATGTTCCACTGCAAC
1 GCTCTACTGTAACTTCAAG-GAGATAAGA-CT----TGTA-A-CTTCAATCTGCTCCACTGCAAC
*
35614366 TTCAGGAAAATAAGATTCGCTATCTCCAGTCT
58 TTCAGGGAAATAAGATTCGCTATCT-CAGTCT
* * * * *
35614398 GTTCTACTGCAGCTTCAAGGAGATAAGACTTGTAACTTCAACCTGCTCCATTGCAACTTCAGGGA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* * * * *
35614463 GATAAGGTTTGCTA--TGA-TTT
66 AATAAGATTCGCTATCTCAGTCT
* * * * ** * *
35614483 GCTCTACTGCAACTTCAAAGAGATAATATCTGCAATTTATAGCTTCAATCTATTCCAATACAACT
1 GCTCTACTGTAACTTCAAGGAGATAAGA-CT----TGTA-A-CTTCAATCTGCTCCACTGCAACT
35614548 TCAGGGAAATAAGATTCGCTATCTTCAGTCT
59 TCAGGGAAATAAGATTCGCTATC-TCAGTCT
* * * * * *
35614579 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGA
1 GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
* * * *
35614644 GATAAGGTTTGCTA--TGA-TCT
66 AATAAGATTCGCTATCTCAGTCT
* ** *
35614664 GCTCTACTGTAACTTC-AGAGAGATAAGATCAGTAATTTATAGCTTCAATCTATTCCATTGCAAC
1 GCTCTACTGTAACTTCAAG-GAGATAAGA-C--T--TGTA-A-CTTCAATCTGCTCCACTGCAAC
*
35614728 TTTAGGGAAATAAGATTCGCTATCTTCAGTCT
58 TTCAGGGAAATAAGATTCGCTATC-TCAGTCT
* * **
35614760 GCTCCACTGTAACTTC-AGAGAGATAAGACTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGG
1 GCTCTACTGTAACTTCAAG-GAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
*
35614824 AGATAAGATTCGC
65 AAATAAGATTCGC
35614837 CATGATGACT
Statistics
Matches: 783, Mismatches: 144, Indels: 117
0.75 0.14 0.11
Matches are distributed among these distances:
84 2 0.00
85 77 0.10
86 11 0.01
87 28 0.04
88 63 0.08
89 148 0.19
90 95 0.12
91 15 0.02
92 147 0.19
93 41 0.05
94 3 0.00
95 43 0.05
96 107 0.14
97 3 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (88 bp):
GCTCTACTGTAACTTCAAGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGA
AATAAGATTCGCTATCTCAGTCT
Found at i:35619204 original size:56 final size:50
Alignment explanation
Indices: 35619108--35619345 Score: 246
Period size: 49 Copynumber: 4.7 Consensus size: 50
35619098 ATTTGGGTAA
* *
35619108 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGA-G--ATG
* *
35619164 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* * * *
35619214 AGAGGTCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
** * * * * *
35619263 AGAACTCCCATGTAAGACCATATCTGGGACATGACATTGGCAGT-ACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
* **
35619312 AAACATCCCATGTAAGACCATGTCTGGGACATGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGG
35619346 TTTTGGCATA
Statistics
Matches: 156, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
49 73 0.47
50 40 0.26
52 1 0.01
53 3 0.02
55 1 0.01
56 38 0.24
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
Found at i:35619272 original size:99 final size:102
Alignment explanation
Indices: 35619112--35619345 Score: 251
Period size: 99 Copynumber: 2.3 Consensus size: 102
35619102 GGGTAAAGAG
* * * * **
35619112 ATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGGTTATGAGAGGTCCCATGT
1 ATCCCACGTAAGACCATGTCTGGGACATGGCATGGGCATCA-CGA-G-TATGAGAACTCCCATGT
* * * * * * * *
35619177 AAGACCATGTTTGGGACATGGCGTTGGCACTGAGATGAGAG
63 AAGACCATATCTGGGACATGACATTGGCACT-ACAAGAAAC
*
35619218 GTCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCA-C-CGA-TATGAGAACTCCCATGTAAG
1 ATCCCACGTAAGACCATGTCTGGGACATGGCATGGGCATCACGAGTATGAGAACTCCCATGTAAG
*
35619279 ACCATATCTGGGACATGACATTGGCAGTACAAGAAAC
66 ACCATATCTGGGACATGACATTGGCACTACAAGAAAC
*
35619316 ATCCCATGTAAGACCATGTCTGGGACATGG
1 ATCCCACGTAAGACCATGTCTGGGACATGG
35619346 TTTTGGCATA
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
98 9 0.08
99 64 0.59
102 2 0.02
104 1 0.01
105 29 0.27
106 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (102 bp):
ATCCCACGTAAGACCATGTCTGGGACATGGCATGGGCATCACGAGTATGAGAACTCCCATGTAAG
ACCATATCTGGGACATGACATTGGCACTACAAGAAAC
Found at i:35620676 original size:12 final size:12
Alignment explanation
Indices: 35620646--35620703 Score: 62
Period size: 12 Copynumber: 4.6 Consensus size: 12
35620636 AGTATAAAAT
*
35620646 AATAATAATAAC
1 AATAAAAATAAC
*
35620658 AAATAAAAGTAAC
1 -AATAAAAATAAC
*
35620671 AATAAAAAAATAAA
1 AAT--AAAAATAAC
35620685 AATAAAAATAAC
1 AATAAAAATAAC
35620697 AATAAAA
1 AATAAAA
35620704 GAGTAATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
12 18 0.47
13 10 0.26
14 10 0.26
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (12 bp):
AATAAAAATAAC
Found at i:35620689 original size:26 final size:27
Alignment explanation
Indices: 35620634--35620703 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 27
35620624 AGAAAACATG
* *
35620634 AAAGTATAAAATAATAATAATAACAAATA
1 AAAGTA-ACAATAA-AAAAATAACAAATA
35620663 AAAGTAACAATAAAAAAATAA-AAATA
1 AAAGTAACAATAAAAAAATAACAAATA
*
35620689 AAAATAACAATAAAA
1 AAAGTAACAATAAAA
35620704 GAGTAATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.50
27 7 0.18
28 6 0.16
29 6 0.16
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.19
Consensus pattern (27 bp):
AAAGTAACAATAAAAAAATAACAAATA
Found at i:35622278 original size:23 final size:24
Alignment explanation
Indices: 35622223--35622321 Score: 89
Period size: 23 Copynumber: 4.3 Consensus size: 24
35622213 AGTGTTATTG
* * *
35622223 ATCAGTGGCAGCTTCAGTTACATT
1 ATCAGTGGTAGCTTCGGCTACATT
** *
35622247 -TCAACGGTAGCTACGGCTACATT
1 ATCAGTGGTAGCTTCGGCTACATT
**
35622270 A-CAGTGGTAGCTTCAACTACA-T
1 ATCAGTGGTAGCTTCGGCTACATT
*
35622292 ATCAGTGGTAGCTTTGGCTACA-T
1 ATCAGTGGTAGCTTCGGCTACATT
35622315 ATCAGTG
1 ATCAGTG
35622322 TGACACTTAT
Statistics
Matches: 59, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
22 2 0.03
23 57 0.97
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
ATCAGTGGTAGCTTCGGCTACATT
Found at i:35622321 original size:46 final size:46
Alignment explanation
Indices: 35622223--35622321 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 46
35622213 AGTGTTATTG
** *
35622223 ATCAGTGGCAGCTTCAGTTACATTTCAACGGTAGCTACGGCTACAT
1 ATCAGTGGCAGCTTCAACTACATATCAACGGTAGCTACGGCTACAT
* ** **
35622269 -TACAGTGGTAGCTTCAACTACATATCAGTGGTAGCTTTGGCTACAT
1 AT-CAGTGGCAGCTTCAACTACATATCAACGGTAGCTACGGCTACAT
35622315 ATCAGTG
1 ATCAGTG
35622322 TGACACTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
45 1 0.02
46 41 0.95
47 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (46 bp):
ATCAGTGGCAGCTTCAACTACATATCAACGGTAGCTACGGCTACAT
Found at i:35622571 original size:23 final size:25
Alignment explanation
Indices: 35622525--35622571 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
35622515 GAAATTGCTA
* *
35622525 AGAAATGTTTGATTAGTTATATGAG
1 AGAAATGTTTAATTAGTTAAATGAG
35622550 AGAAATG-TTAATT-GTTAAATGA
1 AGAAATGTTTAATTAGTTAAATGA
35622572 ATATTTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (25 bp):
AGAAATGTTTAATTAGTTAAATGAG
Found at i:35629866 original size:25 final size:25
Alignment explanation
Indices: 35629835--35629882 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
35629825 TAAGCTATAT
35629835 AACGGGAAGCTCAT-GTGAGCCATGC
1 AACGGGAAGCTCATAG-GAGCCATGC
35629860 AACGGGAAGCTCATAGGAGCCAT
1 AACGGGAAGCTCATAGGAGCCAT
35629883 AATCAAGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (25 bp):
AACGGGAAGCTCATAGGAGCCATGC
Found at i:35629935 original size:49 final size:49
Alignment explanation
Indices: 35629840--35629944 Score: 124
Period size: 49 Copynumber: 2.1 Consensus size: 49
35629830 TATATAACGG
* * *
35629840 GAAGCTCATGTGAGCCATGCAACGGGAAGCTCATAGGAGCCATAATCAA
1 GAAGCTCATGCGAGCCAAGCAACGGGAAGCTCATAAGAGCCATAATCAA
* **
35629889 GAAGCTCATGCGAGCCAAG-AACGGGTAGCTC-TGAAGAGCCATTAATCGG
1 GAAGCTCATGCGAGCCAAGCAACGGGAAGCTCAT-AAGAGCCA-TAATCAA
35629938 GAAGCTC
1 GAAGCTC
35629945 CGAATAGTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 1 0.02
48 18 0.38
49 29 0.60
ACGTcount: A:0.32, C:0.23, G:0.29, T:0.16
Consensus pattern (49 bp):
GAAGCTCATGCGAGCCAAGCAACGGGAAGCTCATAAGAGCCATAATCAA
Found at i:35629943 original size:25 final size:25
Alignment explanation
Indices: 35629910--35630054 Score: 104
Period size: 25 Copynumber: 5.8 Consensus size: 25
35629900 GAGCCAAGAA
*
35629910 CGGGTAGCTCTGAAGAGCCATTAAT
1 CGGGAAGCTCTGAAGAGCCATTAAT
* * *
35629935 CGGGAAGCTCCGAATAGTCA-TATAT
1 CGGGAAGCTCTGAAGAGCCATTA-AT
* *
35629960 AGGGAAG-T-TCAAGCGAGCC-TT-AT
1 CGGGAAGCTCTGAA--GAGCCATTAAT
35629983 CGGGAAGCTCT-AGAGAGCCATTAAT
1 CGGGAAGCTCTGA-AGAGCCATTAAT
* * *
35630008 CAGGAAGCTCATAAAGAGCCTTTAAT
1 CGGGAAGCTC-TGAAGAGCCATTAAT
* *
35630034 CGAGAAGCTCCGAAGAGCCAT
1 CGGGAAGCTCTGAAGAGCCAT
35630055 ATATCGAGAC
Statistics
Matches: 92, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
23 15 0.16
24 7 0.08
25 49 0.53
26 20 0.22
27 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (25 bp):
CGGGAAGCTCTGAAGAGCCATTAAT
Found at i:35630032 original size:26 final size:24
Alignment explanation
Indices: 35629985--35630054 Score: 77
Period size: 26 Copynumber: 2.8 Consensus size: 24
35629975 AGCCTTATCG
*
35629985 GGAAGCTCTAGAGAGCCATTAATC
1 GGAAGCTCTAAAGAGCCATTAATC
*
35630009 AGGAAGCTCATAAAGAGCCTTTAATC
1 -GGAAGCTC-TAAAGAGCCATTAATC
**
35630035 GAGAAGCTCCGAAGAGCCAT
1 G-GAAGCTCTAAAGAGCCAT
35630055 ATATCGAGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
25 17 0.45
26 21 0.55
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (24 bp):
GGAAGCTCTAAAGAGCCATTAATC
Found at i:35630074 original size:25 final size:25
Alignment explanation
Indices: 35629974--35630076 Score: 74
Period size: 25 Copynumber: 4.2 Consensus size: 25
35629964 AAGTTCAAGC
*
35629974 GAGCCT-T-ATCGGGAAGCTC-TAGA
1 GAGCCTATAATCGAGAAGCTCATA-A
35629997 GAGCC-ATTAATC-AGGAAGCTCATAAA
1 GAGCCTA-TAATCGA-GAAGCTCAT-AA
* **
35630023 GAGCCTTTAATCGAGAAGCTCCGAA
1 GAGCCTATAATCGAGAAGCTCATAA
*
35630048 GAGCC-ATATATCGAGACGCTCATAA
1 GAGCCTATA-ATCGAGAAGCTCATAA
35630073 GAGC
1 GAGC
35630077 TGCAGTGTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
23 5 0.08
24 3 0.05
25 34 0.54
26 19 0.30
27 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (25 bp):
GAGCCTATAATCGAGAAGCTCATAA
Found at i:35632187 original size:25 final size:25
Alignment explanation
Indices: 35632149--35632229 Score: 78
Period size: 26 Copynumber: 3.3 Consensus size: 25
35632139 AAGTTTAAGC
35632149 GAGCCA-T-ATTAGGAAGCTCCAAA
1 GAGCCATTAATTAGGAAGCTCCAAA
*
35632172 GAGCCATTAATTAGGAAGCTCACATCA
1 GAGCCATTAATTAGGAAGCTC-CA-AA
* ** *
35632199 -AGCCTTTAATCGGGAAGCTCCGAA
1 GAGCCATTAATTAGGAAGCTCCAAA
35632223 GAGCCAT
1 GAGCCAT
35632230 ATATCGGGAC
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
23 6 0.13
24 2 0.04
25 18 0.39
26 19 0.41
27 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (25 bp):
GAGCCATTAATTAGGAAGCTCCAAA
Found at i:35650089 original size:22 final size:21
Alignment explanation
Indices: 35650056--35650106 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
35650046 TAATATTTCA
35650056 AAAGAAAA-AAAATTAG-TAAT
1 AAAGAAAATAAAA-TAGATAAT
*
35650076 CAAGCAAAATAAAATAGATAAT
1 AAAG-AAAATAAAATAGATAAT
35650098 AAAGAAAAT
1 AAAGAAAAT
35650107 GTTACTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.12
21 12 0.46
22 11 0.42
ACGTcount: A:0.69, C:0.04, G:0.10, T:0.18
Consensus pattern (21 bp):
AAAGAAAATAAAATAGATAAT
Found at i:35651905 original size:12 final size:13
Alignment explanation
Indices: 35651876--35651905 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
35651866 CAATTTGACA
*
35651876 AAAAAATTTTGCT
1 AAAAAATTTTACT
35651889 AAAAAATTTTACT
1 AAAAAATTTTACT
35651902 AAAA
1 AAAA
35651906 TTATGATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (13 bp):
AAAAAATTTTACT
Found at i:35652607 original size:12 final size:12
Alignment explanation
Indices: 35652586--35652620 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
35652576 CACACGGCCA
*
35652586 TGTCCCTGCCCG
1 TGTCCTTGCCCG
35652598 TGTCCTTGCCCG
1 TGTCCTTGCCCG
35652610 TGTCCTTGCCC
1 TGTCCTTGCCC
35652621 ATGTAACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.46, G:0.23, T:0.31
Consensus pattern (12 bp):
TGTCCTTGCCCG
Found at i:35652677 original size:66 final size:66
Alignment explanation
Indices: 35652553--35652678 Score: 155
Period size: 66 Copynumber: 1.9 Consensus size: 66
35652543 GTGTCTCAAG
* * *
35652553 CCATGCAACAATCGAAATAGGGACACACGGCCATGTCCCTGCCCGTGTCCTTGCCCGTGTCCTTG
1 CCATGCAACAATCGAAATAGAGACACACGGCCATGTCCCAGCCCGTGTCCTTGACCGTGTCCTTG
35652618 C
66 C
* * * * * *
35652619 CCATGTAACATTCGAACTAGAGACACATGGCCGTGTCCCAGCTCGTGT-CTCTGACCGTGT
1 CCATGCAACAATCGAAATAGAGACACACGGCCATGTCCCAGCCCGTGTCCT-TGACCGTGT
35652679 AACATTCTAA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
65 2 0.04
66 48 0.96
ACGTcount: A:0.21, C:0.33, G:0.23, T:0.23
Consensus pattern (66 bp):
CCATGCAACAATCGAAATAGAGACACACGGCCATGTCCCAGCCCGTGTCCTTGACCGTGTCCTTG
C
Found at i:35652680 original size:54 final size:54
Alignment explanation
Indices: 35652595--35652778 Score: 255
Period size: 54 Copynumber: 3.4 Consensus size: 54
35652585 ATGTCCCTGC
** * *
35652595 CCGTGTCCTTGCCCGTGTC-CTTGCCCATGTAACATTCGAACTAGAGACACATGG
1 CCGTGTCCCAGCCCGTGTCTC-TGACCATGTAACATTCGAACTAGAGACACACGG
* * *
35652649 CCGTGTCCCAGCTCGTGTCTCTGACCGTGTAACATTCTAACTAGAGACACACGG
1 CCGTGTCCCAGCCCGTGTCTCTGACCATGTAACATTCGAACTAGAGACACACGG
* * *
35652703 TCGTGTCCCAGCCCGTGTCTCTGCCCATGTAACATTTGAACTAGAGACACACGG
1 CCGTGTCCCAGCCCGTGTCTCTGACCATGTAACATTCGAACTAGAGACACACGG
35652757 CCGTGT-CCAGCCCGTGTCTCTG
1 CCGTGTCCCAGCCCGTGTCTCTG
35652779 CTCGTCTAAC
Statistics
Matches: 115, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
53 16 0.14
54 98 0.85
55 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.23, T:0.25
Consensus pattern (54 bp):
CCGTGTCCCAGCCCGTGTCTCTGACCATGTAACATTCGAACTAGAGACACACGG
Found at i:35652827 original size:108 final size:108
Alignment explanation
Indices: 35652607--35652828 Score: 265
Period size: 108 Copynumber: 2.1 Consensus size: 108
35652597 GTGTCCTTGC
* *
35652607 CCGTGTCCTTGCCCATGTAACATTCGAACTAGAGACACATGGCCGTGTCCCAGCTCGTGTCTCTG
1 CCGTGTCCTTGCCCATGTAACATTCGAACTAGAGACACACGGCCGTGTCCCAGCCCGTGTCTCTG
* * * *
35652672 ACCGTGTAACATTCTAACTAGAGACACACGGTCGTGTCCCAGC
66 ACCGTCTAACATACTAACTAGAGACACACGGTCGTGTCACAGA
*
35652715 CCGTGT-CTCTGCCCATGTAACATTTGAACTAGAGACACACGGCCGTGT-CCAGCCCGTGTCTCT
1 CCGTGTCCT-TGCCCATGTAACATTCGAACTAGAGACACACGGCCGTGTCCCAGCCCGTGTCTCT
* * * *
35652778 G-CTCGTCTAAC-TCACTAAGTAGGGTCACATGG-CTGTGTCACACGA
65 GAC-CGTCTAACAT-ACTAACTAGAGACACACGGTC-GTGTCACA-GA
35652823 CCGTGT
1 CCGTGT
35652829 GCTAGGTCGT
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
106 3 0.03
107 45 0.46
108 50 0.51
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (108 bp):
CCGTGTCCTTGCCCATGTAACATTCGAACTAGAGACACACGGCCGTGTCCCAGCCCGTGTCTCTG
ACCGTCTAACATACTAACTAGAGACACACGGTCGTGTCACAGA
Found at i:35654756 original size:20 final size:20
Alignment explanation
Indices: 35654721--35654769 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
35654711 ATCATGGTCT
*
35654721 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTTTTTACTTAC
35654740 TCT-CTTACTTTTTTACTTAC
1 T-TGCTTACTTTTTTACTTAC
35654760 TTGCTTACTT
1 TTGCTTACTT
35654770 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.04, T:0.59
Consensus pattern (20 bp):
TTGCTTACTTTTTTACTTAC
Found at i:35655095 original size:50 final size:49
Alignment explanation
Indices: 35654971--35655115 Score: 168
Period size: 50 Copynumber: 2.9 Consensus size: 49
35654961 GATAATAACA
* *
35654971 TGCCAAAGCCATGTCTCAGACATGGTCTTACATGGGATGTT-TCATGTAC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATATAC
* * * *
35655020 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATAT-C
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAC
* **
35655068 GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 --TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATA
35655116 AACTCAATAA
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
48 4 0.05
49 37 0.46
50 40 0.49
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (49 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAC
Found at i:35659754 original size:39 final size:40
Alignment explanation
Indices: 35659654--35659759 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
35659644 TAGACTGAAC
* * *
35659654 ACACCAAACAGAAGCTCATAAAAGTTGGTCCAACTGAAAT
1 ACACCAAACAGAAGCTCATAAGAGCTGGTCCAACCGAAAT
*
35659694 ACACCAAACAGAAGCTCATAAGAGCTGGTCCACCCG-AA-
1 ACACCAAACAGAAGCTCATAAGAGCTGGTCCAACCGAAAT
**
35659732 ACACGTGAACAGAAGCTCATAAGAGCTG
1 ACAC-CAAACAGAAGCTCATAAGAGCTG
35659760 AACAGAAGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
38 4 0.07
39 23 0.39
40 32 0.54
ACGTcount: A:0.42, C:0.25, G:0.19, T:0.14
Consensus pattern (40 bp):
ACACCAAACAGAAGCTCATAAGAGCTGGTCCAACCGAAAT
Found at i:35659763 original size:21 final size:21
Alignment explanation
Indices: 35659737--35659781 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
35659727 CCGAAACACG
*
35659737 TGAACAGAAGCTCATAAGAGC
1 TGAACAGAAGATCATAAGAGC
35659758 TGAACAGAAGATCATAAGAGC
1 TGAACAGAAGATCATAAGAGC
35659779 TGA
1 TGA
35659782 TCCACCCGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (21 bp):
TGAACAGAAGATCATAAGAGC
Found at i:35674537 original size:13 final size:13
Alignment explanation
Indices: 35674519--35674543 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35674509 AAAATCTGAT
35674519 TTCAAGTGTATTC
1 TTCAAGTGTATTC
35674532 TTCAAGTGTATT
1 TTCAAGTGTATT
35674544 GTGTATAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.48
Consensus pattern (13 bp):
TTCAAGTGTATTC
Found at i:35679820 original size:19 final size:20
Alignment explanation
Indices: 35679798--35679835 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
35679788 CACAATTTAT
*
35679798 CTTAAACATATTA-AAAGCA
1 CTTAAACACATTATAAAGCA
*
35679817 CTTATACACATTATAAAGC
1 CTTAAACACATTATAAAGC
35679836 TTACAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.29
Consensus pattern (20 bp):
CTTAAACACATTATAAAGCA
Found at i:35681601 original size:19 final size:19
Alignment explanation
Indices: 35681577--35681639 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
35681567 ATATATATAT
35681577 TAATAAATGATGAATTTAA
1 TAATAAATGATGAATTTAA
* *
35681596 TAATAATATG-TCAAGTTAAA
1 TAATAA-ATGATGAA-TTTAA
35681616 TTTAAT-AAT-ATGAATTTAA
1 --TAATAAATGATGAATTTAA
35681635 TAATA
1 TAATA
35681640 GTAATATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 13
0.67 0.08 0.25
Matches are distributed among these distances:
17 4 0.12
19 13 0.38
20 12 0.35
21 1 0.03
22 4 0.12
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (19 bp):
TAATAAATGATGAATTTAA
Found at i:35683394 original size:45 final size:44
Alignment explanation
Indices: 35683345--35683429 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 44
35683335 ATTTGCTATT
*
35683345 CTCAGTCTACCCCACTGCAACTTCAAGGGGGATAAGACCTGTTTA
1 CTCAGTCTACCCCACTGCAACTTC-AGGGAGATAAGACCTGTTTA
* * **
35683390 CTCAGTCTGCTCTGCTGCAACTTCAGGGAGATAAGACCTG
1 CTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGACCTG
35683430 ATGCGATCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 15 0.43
45 20 0.57
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (44 bp):
CTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGACCTGTTTA
Found at i:35683500 original size:44 final size:44
Alignment explanation
Indices: 35683356--35684026 Score: 313
Period size: 44 Copynumber: 15.5 Consensus size: 44
35683346 TCAGTCTACC
* * * *
35683356 CCACTGCAACTTCAAGGGGGATAAGACCTGTTTAC-TCAGTCTGCT
1 CCACTGCAACTTC-AGGGAGATAAGATCT-ATTACTTCAATCTGCT
** * * * * **
35683401 CTGCTGCAACTTCAGGGAGATAAGA-C-CTGA-TGCGATCCACT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * * *
35683442 CTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * **
35683486 CCACTACAACTTCAGGGAGATAGGAT-TATCGGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTAT-TACTTCAATCTGCT
* *** * *
35683530 CCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCGATCTGCC
1 CCACTGCAACTTCAGGGAGATAAGATCTATTA-CTTCAATCTGCT
* * * * * * * **
35683575 CCATTGTAACCTCA-GGAGGATAAGA-C--CTGCTGCGATCCACT
1 CCACTGCAACTTCAGGGA-GATAAGATCTATTACTTCAATCTGCT
* * * * *
35683616 CTACTGCAACTTCAGAGAGATAAGATTTATTACTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * ** *
35683660 CTACTACAACTTCAGGGAGAT-AGTAT-TATCGGCTTCAATCTACT
1 CCACTGCAACTTCAGGGAGATAAG-ATCTAT-TACTTCAATCTGCT
* * * * *** * * *
35683704 CCACTGTAAGTTTAGGGAGATAAGATTTGCCATCTTCGATCTACC
1 CCACTGCAACTTCAGGGAGATAAGATCTATTA-CTTCAATCTGCT
* * * * * * *
35683749 CCACTGCAACCTCAGGGGGATAATA-C--TTGCTACGATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * * *
35683790 CTACTGCAACTTCAGAGAGGTAAGATCTATTACTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* **
35683834 CCACTACAACTTCAGGGAGATAAGAT-TATCGGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTAT-TACTTCAATCTGCT
* ** * **
35683878 -CACTACTGCTT-AGGGAGATAAGATCTGCTT-CTTCGGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATCT-ATTACTTCAATCTGCT
* * * * * * *
35683920 CTACTGTAACCTCAGGGAGATAAGATC--TGA-TGCGATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* * * *
35683961 CTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCT
1 CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
* *
35684005 CCACTACATCTTCAGGGAGATA
1 CCACTGCAACTTCAGGGAGATA
35684027 GGATTTGTGG
Statistics
Matches: 464, Mismatches: 133, Indels: 59
0.71 0.20 0.09
Matches are distributed among these distances:
41 117 0.25
42 28 0.06
43 31 0.07
44 216 0.47
45 72 0.16
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATCTATTACTTCAATCTGCT
Found at i:35683599 original size:174 final size:172
Alignment explanation
Indices: 35683412--35684048 Score: 911
Period size: 174 Copynumber: 3.7 Consensus size: 172
35683402 TGCTGCAACT
35683412 TCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
1 TCAGGG-GATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
35683477 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTT
*
35683542 CAGGGAGATAAGATTTGCCATCTTCGATCTGCCCCATTGTAACC
130 -AGGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGTAACC
* *
35683586 TCAGGAGGATAAGACCTGCTGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATTTATTACTT
1 TCAGG-GGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
* * * * *
35683651 TAATCCGCTCTACTACAACTTCAGGGAGATAGTATTATCGGCTTCAATCTACTCCACTGTAAGTT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAA-CT
* *
35683716 TAGGGAGATAAGATTTGCCATCTTCGATCTACCCCACTGCAACC
129 TAGGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGTAACC
* * * * * *
35683760 TCAGGGGGATAATACTTGCTACGATCTACTCTACTGCAACTTCAGAGAGGTAAGATCTATTACTT
1 TCA-GGGGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
* * * **
35683825 TAATCTGCTCCACTACAACTTCAGGGAGATAAGATTATCGGCTTCAATCTGCT-CACTACTGCTT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTT
* * * * *
35683889 AGGGAGATAAGATCTG-CTTCTTCGGTCTGCTCTACTGTAACC
130 AGGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGTAACC
* *
35683931 TCAGGGAGATAAGATCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
1 TCAGGG-GATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTT
* * *
35683996 TAATCCGCTCCACTACATCTTCAGGGAGATAGGATT-TGTGGCTTAAATCTGCT
65 TAATCCGCTCCACTACAACTTCAGGGAGATAGGATTAT-CGGCTTCAATCTGCT
35684049 TCCTTACTCT
Statistics
Matches: 414, Mismatches: 44, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
170 4 0.01
171 121 0.29
172 17 0.04
173 4 0.01
174 263 0.64
175 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (172 bp):
TCAGGGGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTT
AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTTA
GGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGTAACC
Found at i:35683636 original size:86 final size:85
Alignment explanation
Indices: 35683404--35683986 Score: 287
Period size: 86 Copynumber: 6.7 Consensus size: 85
35683394 GTCTGCTCTG
* * * * * *
35683404 CTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACCTCAGGG-GATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGATT
*** ** * *
35683469 TATTA-CTTTAATCCGCTCCA
65 TGCCATCTTCGATCTGCCCCA
* * * * * * * * *
35683489 CTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
1 CTGCAACCTCAGGG-GATA--A-TACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAG
35683554 ATTTGCCATCTTCGATCTGCCCCA
62 ATTTGCCATCTTCGATCTGCCCCA
* * * * *
35683578 TTGTAACCTCAGGAGGATAAGACCTGCTGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATT
1 CTGCAACCTCAGG-GGATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGATT
*** ** * * *
35683643 TATTA-CTTTAATCCGCTCTA
65 TGCCATCTTCGATCTGCCCCA
* * * * * * * * * * *
35683663 CTACAACTTCAGGGAGATAGTATTATCGGCTTCAATCTACTCCACTGTAAGTTTAGGGAGATAAG
1 CTGCAACCTCAGGG-GATA--A-TACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAG
*
35683728 ATTTGCCATCTTCGATCTACCCCA
62 ATTTGCCATCTTCGATCTGCCCCA
* * *
35683752 CTGCAACCTCAGGGGGATAATACTTGCTACGATCTACTCTACTGCAACTTCAGAGAGGTAAGATC
1 CTGCAACCTCA-GGGGATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGATT
*** ** *
35683817 TATTA-CTTTAATCTGCTCCA
65 TGCCATCTTCGATCTGCCCCA
* * * * * * * * ** *
35683837 CTACAACTTCAGGGAGATAAGATTATCGGCTTCAATCTGCTC-ACTACTGCTT-AGGGAGATAAG
1 CTGCAACCTCAGGG-GAT-A-A-TACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAG
* * * * *
35683900 ATCTG-CTTCTTCGGTCTGCTCTA
62 ATTTGCCATCTTCGATCTGCCCCA
* * * * *
35683923 CTGTAACCTCAGGGAGATAAGATCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGAT
1 CTGCAACCTCAGGG-GATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGAT
35683987 CTATTACTTT
Statistics
Matches: 362, Mismatches: 118, Indels: 36
0.70 0.23 0.07
Matches are distributed among these distances:
83 13 0.04
84 12 0.03
85 77 0.21
86 113 0.31
87 12 0.03
88 85 0.23
89 46 0.13
90 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (85 bp):
CTGCAACCTCAGGGGATAATACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAAGATTT
GCCATCTTCGATCTGCCCCA
Found at i:35684167 original size:129 final size:129
Alignment explanation
Indices: 35684017--35684421 Score: 666
Period size: 129 Copynumber: 3.1 Consensus size: 129
35684007 ACTACATCTT
* * * **
35684017 CAGGGAGATAGGATTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTTACCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
*
35684082 GATCTGCTCTGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
66 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
*
35684146 TAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* *
35684211 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGAAATTTCCCAACCTATTCCACTGTTGAC
66 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
* *
35684275 CAGGGATATAGGACTTGTGGCTTAAATTTGATTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* * * *
35684340 GATCTGCTCCACTATTGCTTAGGAAGACAAGATCTGTACTTTCCCAACCTATTCCACTACTGAC
66 GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
*
35684404 CAAGGATATAGGACTTGT
1 CAGGGATATAGGACTTGT
35684422 AATCTTCAAC
Statistics
Matches: 257, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 257 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (129 bp):
CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
GATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
Found at i:35684434 original size:44 final size:44
Alignment explanation
Indices: 35684384--35684717 Score: 404
Period size: 44 Copynumber: 7.6 Consensus size: 44
35684374 TGTACTTTCC
** * *
35684384 CAACCTATTCCACTACTGACCAAGGATATAGGACTTGTAATCTT
1 CAACCTATTCCACTACTGGTCAGGGATATAGGACTTGCAATCTT
* * * *
35684428 CAACCTATTCCATTGCTGGTTAGGGAGT-TAGGATTTGCAATCTT
1 CAACCTATTCCACTACTGGTCAGGGA-TATAGGACTTGCAATCTT
*
35684472 CTACCTATTCCACTACTGGTCAGGGAGT-TAGGACTTGCAATCTT
1 CAACCTATTCCACTACTGGTCAGGGA-TATAGGACTTGCAATCTT
*
35684516 CAACCTATTCCACTGCTGGTCAGGGAGT-TAGGACTTGCAATCTT
1 CAACCTATTCCACTACTGGTCAGGGA-TATAGGACTTGCAATCTT
* * *
35684560 CTACCTATTCCTCTACTGGTCAGGGAGATAGGACTTGCAATCTT
1 CAACCTATTCCACTACTGGTCAGGGATATAGGACTTGCAATCTT
* * * *
35684604 CTACCTATTCCTCTACTGGTCAGGGAGATAGGACTTACAATCTT
1 CAACCTATTCCACTACTGGTCAGGGATATAGGACTTGCAATCTT
* ** * *
35684648 CAACCTATTCCACTGCTGACCAGGGATATAGGACCTACAATCTT
1 CAACCTATTCCACTACTGGTCAGGGATATAGGACTTGCAATCTT
* *
35684692 CAACCTATTCCACTGCTGTTCAGGGA
1 CAACCTATTCCACTACTGGTCAGGGA
35684718 GCTAGGTTTT
Statistics
Matches: 259, Mismatches: 29, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
44 258 1.00
45 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (44 bp):
CAACCTATTCCACTACTGGTCAGGGATATAGGACTTGCAATCTT
Found at i:35684504 original size:88 final size:88
Alignment explanation
Indices: 35684386--35684723 Score: 462
Period size: 88 Copynumber: 3.8 Consensus size: 88
35684376 TACTTTCCCA
* * * *
35684386 ACCTATTCCACTACTGACCAAGGATATAGGACTTGTAATCTTCAACCTATTCCATTGCTGGTTAG
1 ACCTATTCCACTACTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCACTGCTGGTCAG
*
35684451 GGAGTTAGGATTTGCAATCTTCT
66 GGAGTTAGGACTTGCAATCTTCT
**
35684474 ACCTATTCCACTACTGGTCAGGGAGT-TAGGACTTGCAATCTTCAACCTATTCCACTGCTGGTCA
1 ACCTATTCCACTACTGACCAGGGA-TATAGGACTTGCAATCTTCAACCTATTCCACTGCTGGTCA
35684538 GGGAGTTAGGACTTGCAATCTTCT
65 GGGAGTTAGGACTTGCAATCTTCT
* ** * * * *
35684562 ACCTATTCCTCTACTGGTCAGGGAGATAGGACTTGCAATCTTCTACCTATTCCTCTACTGGTCAG
1 ACCTATTCCACTACTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCACTGCTGGTCAG
* * *
35684627 GGAGATAGGACTTACAATCTTCA
66 GGAGTTAGGACTTGCAATCTTCT
* * * *
35684650 ACCTATTCCACTGCTGACCAGGGATATAGGACCTACAATCTTCAACCTATTCCACTGCTGTTCAG
1 ACCTATTCCACTACTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCACTGCTGGTCAG
*
35684715 GGAGCTAGG
66 GGAGTTAGG
35684724 TTTTGTGGTT
Statistics
Matches: 221, Mismatches: 27, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
88 220 1.00
89 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (88 bp):
ACCTATTCCACTACTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCACTGCTGGTCAG
GGAGTTAGGACTTGCAATCTTCT
Found at i:35684549 original size:132 final size:132
Alignment explanation
Indices: 35684384--35684728 Score: 480
Period size: 132 Copynumber: 2.6 Consensus size: 132
35684374 TGTACTTTCC
* * *
35684384 CAACCTATTCCACTACTGACCAAGGATATAGGACTTGTAATCTTCAACCTATTCCATTGCTGGTT
1 CAACCTATTCCACTGCTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCATTGCTGGTT
* * *
35684449 AGGGAGTTAGGATTTGCAATCTTCTACCTATTCCACTACTGGTCAGGGAGTTAGGACTTGCAATC
66 AGGGAGATAGGATTTGCAATCTTCTACCTATTCCACTACTGGTCAGGGAGATAGGACTTACAATC
35684514 TT
131 TT
** * *
35684516 CAACCTATTCCACTGCTGGTCAGGGAGT-TAGGACTTGCAATCTTCTACCTATTCC-TCTACTGG
1 CAACCTATTCCACTGCTGACCAGGGA-TATAGGACTTGCAATCTTCAACCTATTCCAT-TGCTGG
* * *
35684579 TCAGGGAGATAGGACTTGCAATCTTCTACCTATTCCTCTACTGGTCAGGGAGATAGGACTTACAA
64 TTAGGGAGATAGGATTTGCAATCTTCTACCTATTCCACTACTGGTCAGGGAGATAGGACTTACAA
35684644 TCTT
129 TCTT
* * *
35684648 CAACCTATTCCACTGCTGACCAGGGATATAGGACCTACAATCTTCAACCTATTCCACTGCT-GTT
1 CAACCTATTCCACTGCTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCATTGCTGGTT
* *
35684712 CAGGGAGCTAGGTTTTG
66 -AGGGAGATAGGATTTG
35684729 TGGTTTTACC
Statistics
Matches: 184, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
131 4 0.02
132 179 0.97
133 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (132 bp):
CAACCTATTCCACTGCTGACCAGGGATATAGGACTTGCAATCTTCAACCTATTCCATTGCTGGTT
AGGGAGATAGGATTTGCAATCTTCTACCTATTCCACTACTGGTCAGGGAGATAGGACTTACAATC
TT
Found at i:35685955 original size:8 final size:7
Alignment explanation
Indices: 35685944--35685992 Score: 55
Period size: 8 Copynumber: 6.7 Consensus size: 7
35685934 CTATTTTTAC
35685944 TTTTTCA
1 TTTTTCA
*
35685951 TTTTTTTA
1 -TTTTTCA
35685959 TTTTTCA
1 TTTTTCA
35685966 -TTTTCA
1 TTTTTCA
35685972 TTTTTTCA
1 -TTTTTCA
35685980 TTTTTCA
1 TTTTTCA
35685987 TATTTT
1 T-TTTT
35685993 TTCCGACTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
6 6 0.17
7 14 0.39
8 16 0.44
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTCA
Found at i:35685955 original size:14 final size:13
Alignment explanation
Indices: 35685936--35685984 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
35685926 TAGCTTCTCT
35685936 ATTTTTACTTTTTC
1 ATTTTTA-TTTTTC
35685950 ATTTTTTTATTTTTC
1 A--TTTTTATTTTTC
*
35685965 ATTTTCATTTTTTC
1 ATTTTTA-TTTTTC
35685979 ATTTTT
1 ATTTTT
35685985 CATATTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 5 0.17
14 12 0.40
15 7 0.23
16 6 0.20
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTTTATTTTTC
Found at i:35685962 original size:15 final size:15
Alignment explanation
Indices: 35685937--35685984 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
35685927 AGCTTCTCTA
35685937 TTTTTACTTTTTCATT
1 TTTTTA-TTTTTCATT
35685953 TTTTTATTTTTCATT
1 TTTTTATTTTTCATT
**
35685968 TTCAT-TTTTTCATT
1 TTTTTATTTTTCATT
35685982 TTT
1 TTT
35685985 CATATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 11 0.38
15 12 0.41
16 6 0.21
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTATTTTTCATT
Found at i:35685969 original size:21 final size:21
Alignment explanation
Indices: 35685935--35685987 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
35685925 TTAGCTTCTC
*
35685935 TATTTTTACTTTTTCATTTTTT
1 TATTTTT-CATTTTCATTTTTT
35685957 TATTTTTCATTTTCATTTTTT
1 TATTTTTCATTTTCATTTTTT
*
35685978 CATTTTTCAT
1 TATTTTTCAT
35685988 ATTTTTTCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 22 0.76
22 7 0.24
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (21 bp):
TATTTTTCATTTTCATTTTTT
Found at i:35685985 original size:15 final size:16
Alignment explanation
Indices: 35685944--35685993 Score: 70
Period size: 15 Copynumber: 3.3 Consensus size: 16
35685934 CTATTTTTAC
*
35685944 TTTTTCATTTTT-TTA
1 TTTTTCATTTTTCATA
35685959 TTTTTCA-TTTTCAT-
1 TTTTTCATTTTTCATA
35685973 TTTTTCATTTTTCATA
1 TTTTTCATTTTTCATA
35685989 TTTTT
1 TTTTT
35685994 TCCGACTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 11 0.35
15 15 0.48
16 5 0.16
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCATTTTTCATA
Found at i:35686859 original size:5 final size:6
Alignment explanation
Indices: 35686844--35686934 Score: 58
Period size: 6 Copynumber: 14.3 Consensus size: 6
35686834 TGGCCTCTCA
* * * *
35686844 TTTTTC TTTTTC TTTTTC TCTTTA TTTTTC ATTTTTAT TTTTATT TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -TTTTT-C TTTT-TC TTTTTC
* **
35686895 ATTTTTGC TTTTGAC -TTTGA TTTTTC TTTTTC TTTTTC TT
1 -TTTTT-C TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC TT
35686935 ATTTTTTGAT
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
6 41 0.61
7 24 0.36
8 2 0.03
ACGTcount: A:0.08, C:0.12, G:0.03, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:35686878 original size:19 final size:18
Alignment explanation
Indices: 35686850--35686891 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
35686840 CTCATTTTTC
*
35686850 TTTTTCTTTTTCTCTTTA
1 TTTTTCTTTTTATCTTTA
*
35686868 TTTTTCATTTTTATTTTTA
1 TTTTTC-TTTTTATCTTTA
35686887 TTTTT
1 TTTTT
35686892 TTCATTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTCTTTTTATCTTTA
Found at i:35686951 original size:6 final size:6
Alignment explanation
Indices: 35686938--35687000 Score: 90
Period size: 6 Copynumber: 10.3 Consensus size: 6
35686928 TTTTCTTATT
* * *
35686938 TTTTGA TTTAGA TTTTGA TTTAGA TTTAGA TTTTGA TTTTGA TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
35686986 TTTTGA TTTTTGA TT
1 TTTTGA -TTTTGA TT
35687001 GAATCTGAGC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
6 46 0.88
7 6 0.12
ACGTcount: A:0.21, C:0.00, G:0.16, T:0.63
Consensus pattern (6 bp):
TTTTGA
Found at i:35686955 original size:41 final size:40
Alignment explanation
Indices: 35686869--35686958 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 40
35686859 TTCTCTTTAT
* * *
35686869 TTTTCATTTTTATTTTTATTTTTTTCATTTTTGCTTTTGA
1 TTTTGATTTTTATTTTTATTTTTTTCATTTTTGATTTAGA
* * *
35686909 CTTTGATTTTTCTTTTTCTTTTTCTT-ATTTTTTGATTTAGA
1 TTTTGATTTTTATTTTTATTTTT-TTCA-TTTTTGATTTAGA
35686950 TTTTGATTT
1 TTTTGATTT
35686959 AGATTTAGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
40 20 0.49
41 21 0.51
ACGTcount: A:0.12, C:0.08, G:0.07, T:0.73
Consensus pattern (40 bp):
TTTTGATTTTTATTTTTATTTTTTTCATTTTTGATTTAGA
Found at i:35692891 original size:19 final size:18
Alignment explanation
Indices: 35692860--35692904 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
35692850 TTGCTGTCGA
35692860 TTTTTGCTCCTCT-TTTTGT
1 TTTTTG-TCCTCTGTTTT-T
35692879 TTGTTTGTCCTCTGTTTTT
1 TT-TTTGTCCTCTGTTTTT
35692898 TTTTTGT
1 TTTTTGT
35692905 GACATTGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 5 0.21
19 11 0.46
20 8 0.33
ACGTcount: A:0.00, C:0.16, G:0.13, T:0.71
Consensus pattern (18 bp):
TTTTTGTCCTCTGTTTTT
Found at i:35696343 original size:36 final size:36
Alignment explanation
Indices: 35696303--35696382 Score: 160
Period size: 36 Copynumber: 2.2 Consensus size: 36
35696293 GAAACAAATT
35696303 AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
1 AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
35696339 AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
1 AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
35696375 AAGAATAA
1 AAGAATAA
35696383 CAAGGAAAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (36 bp):
AAGAATAAATTTTACTATTCACATGTGTAGAAGAAA
Found at i:35697688 original size:17 final size:17
Alignment explanation
Indices: 35697632--35697691 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
35697622 TTCCTCAAAT
* *
35697632 TTTAGTAAAATTAATAAA
1 TTTAATAAAATT-TTAAA
* *
35697650 TTTTAATTAAAATATT-AC
1 -TTTAA-TAAAATTTTAAA
35697668 TTTAATAAAATTTTAAA
1 TTTAATAAAATTTTAAA
35697685 TTTAATA
1 TTTAATA
35697692 TAAAAATACA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
16 8 0.24
17 13 0.39
18 1 0.03
19 5 0.15
20 6 0.18
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TTTAATAAAATTTTAAA
Found at i:35700247 original size:14 final size:14
Alignment explanation
Indices: 35700230--35700259 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
35700220 AAAATATTTG
35700230 TATTATTTTAATAT
1 TATTATTTTAATAT
*
35700244 TATTTTTTTAATAT
1 TATTATTTTAATAT
35700258 TA
1 TA
35700260 AAAAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTATTTTAATAT
Found at i:35702258 original size:34 final size:33
Alignment explanation
Indices: 35702199--35702340 Score: 158
Period size: 34 Copynumber: 4.2 Consensus size: 33
35702189 AACATGTCTT
* * *
35702199 TTGCTACTGTATTGATTTATGATAAGCATATTAA
1 TTGCTA-TGTATTGATCTGTTATAAGCATATTAA
* *
35702233 TTGCAATTGTATTGACCTGTTATAAGCATATTAA
1 TTGCTA-TGTATTGATCTGTTATAAGCATATTAA
* *
35702267 ATACTACTGTATTGATCTGTTATAAGCATATTAA
1 TTGCTA-TGTATTGATCTGTTATAAGCATATTAA
***
35702301 TTGCTACCAATTGATCTGTTATAAGCATATTAA
1 TTGCTATGTATTGATCTGTTATAAGCATATTAA
*
35702334 ATGCTAT
1 TTGCTAT
35702341 CACATTGATC
Statistics
Matches: 90, Mismatches: 18, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
33 29 0.32
34 61 0.68
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (33 bp):
TTGCTATGTATTGATCTGTTATAAGCATATTAA
Found at i:35702281 original size:68 final size:67
Alignment explanation
Indices: 35702202--35702335 Score: 187
Period size: 68 Copynumber: 2.0 Consensus size: 67
35702192 ATGTCTTTTG
* ***
35702202 CTACTGTATTGATTTATGATAAGCATATTAATTGCAATTGTATTGACCTGTTATAAGCATATTAA
1 CTACTGTATTGATCTATGATAAGCATATTAATTGCAA-CCAATTGACCTGTTATAAGCATATTAA
35702267 ATA
65 ATA
* * * *
35702270 CTACTGTATTGATCTGTTATAAGCATATTAATTGCTACCAATTGATCTGTTATAAGCATATTAAA
1 CTACTGTATTGATCTATGATAAGCATATTAATTGCAACCAATTGACCTGTTATAAGCATATTAAA
35702335 T
66 T
35702336 GCTATCACAT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
67 25 0.43
68 33 0.57
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (67 bp):
CTACTGTATTGATCTATGATAAGCATATTAATTGCAACCAATTGACCTGTTATAAGCATATTAAA
TA
Found at i:35702319 original size:33 final size:33
Alignment explanation
Indices: 35702243--35702351 Score: 146
Period size: 34 Copynumber: 3.2 Consensus size: 33
35702233 TTGCAATTGT
* * **
35702243 ATTGACCTGTTATAAGCATATTAAATACTACTGT
1 ATTGATCTGTTATAAGCATATTAAATGCTAC-CA
*
35702277 ATTGATCTGTTATAAGCATATTAATTGCTACCA
1 ATTGATCTGTTATAAGCATATTAAATGCTACCA
*
35702310 ATTGATCTGTTATAAGCATATTAAATGCTATCA
1 ATTGATCTGTTATAAGCATATTAAATGCTACCA
35702343 CATTGATCT
1 -ATTGATCT
35702352 AAGCATGCCA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
33 31 0.46
34 36 0.54
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (33 bp):
ATTGATCTGTTATAAGCATATTAAATGCTACCA
Found at i:35702348 original size:67 final size:68
Alignment explanation
Indices: 35702220--35702351 Score: 169
Period size: 67 Copynumber: 2.0 Consensus size: 68
35702210 TTGATTTATG
*** **
35702220 ATAAGCATATTAATTGCAATTGTATTGACCTGTTATAAGCATATTAAATACTACTGTATTGATCT
1 ATAAGCATATTAATTGCAATCCAATTGACCTGTTATAAGCATATTAAATACTACTACATTGATCT
35702285 GTT
66 GTT
* * *
35702288 ATAAGCATATTAATTGCTA-CCAATTGATCTGTTATAAGCATATTAAATGCTA-TCACATTGATC
1 ATAAGCATATTAATTGCAATCCAATTGACCTGTTATAAGCATATTAAATACTACT-ACATTGATC
35702351 T
65 T
35702352 AAGCATGCCA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
66 1 0.02
67 36 0.65
68 18 0.33
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (68 bp):
ATAAGCATATTAATTGCAATCCAATTGACCTGTTATAAGCATATTAAATACTACTACATTGATCT
GTT
Found at i:35702603 original size:45 final size:45
Alignment explanation
Indices: 35702429--35702590 Score: 173
Period size: 45 Copynumber: 3.6 Consensus size: 45
35702419 AAATTTGCTA
* *
35702429 TGTATCCACAGCTAGAGGCAGATTCTATCTGTGAGATATTTGTTG
1 TGTATCCACAGCTAGAGGCAGATTCTATCTGTAAGATTTTTGTTG
* * * * *
35702474 TGCATCCACAACTAGAGGTAGATTCTAACTGTAGGA-TTTTGTTG
1 TGTATCCACAGCTAGAGGCAGATTCTATCTGTAAGATTTTTGTTG
* * * * * *
35702518 TGTTTTCACAGCTAAAAGCAGATTGTATCTGCAAGATTTTTGTTG
1 TGTATCCACAGCTAGAGGCAGATTCTATCTGTAAGATTTTTGTTG
* * *
35702563 TGTATCCACAGCCAGAGGTAAATTCTAT
1 TGTATCCACAGCTAGAGGCAGATTCTAT
35702591 TTGTGGGATT
Statistics
Matches: 90, Mismatches: 26, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
44 32 0.36
45 58 0.64
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (45 bp):
TGTATCCACAGCTAGAGGCAGATTCTATCTGTAAGATTTTTGTTG
Found at i:35702658 original size:22 final size:22
Alignment explanation
Indices: 35702618--35702660 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
35702608 GTGTCCACAT
* *
35702618 CCATTGGTAGTTTATCTACAAA
1 CCATTGGTAGTTAAACTACAAA
*
35702640 CCATTGGTGGTTAAACTACAA
1 CCATTGGTAGTTAAACTACAA
35702661 CCCGATGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (22 bp):
CCATTGGTAGTTAAACTACAAA
Found at i:35703525 original size:17 final size:17
Alignment explanation
Indices: 35703503--35703536 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
35703493 ACGATCATAG
35703503 TAATAACAA-AAGACTTC
1 TAATAA-AATAAGACTTC
35703520 TAATAAAATAAGACTTC
1 TAATAAAATAAGACTTC
35703537 GTTTGTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (17 bp):
TAATAAAATAAGACTTC
Found at i:35707286 original size:32 final size:32
Alignment explanation
Indices: 35707247--35707330 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 32
35707237 TATTGAATTT
*
35707247 AGTTTGTTGGATTTTGAAATTATTATGTCTTGA
1 AGTTTGTTGGATATTGAAATTATTATGT-TTGA
* * *
35707280 A-TTTGTTAGATATTGAATTTATTATGTTTTA
1 AGTTTGTTGGATATTGAAATTATTATGTTTGA
*
35707311 AGCTTGTTGGATATTGAAAT
1 AGTTTGTTGGATATTGAAAT
35707331 GATTGACAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
31 4 0.09
32 38 0.88
33 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.19, T:0.51
Consensus pattern (32 bp):
AGTTTGTTGGATATTGAAATTATTATGTTTGA
Found at i:35708271 original size:25 final size:26
Alignment explanation
Indices: 35708220--35708272 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
35708210 TAAAAGTAAG
35708220 AAGCATAGAAAAATTTGGCTTCAAAA
1 AAGCATAGAAAAATTTGGCTTCAAAA
35708246 AAGCATAGAAAAATTTGGCTTCAAAA
1 AAGCATAGAAAAATTTGGCTTCAAAA
35708272 A
1 A
35708273 TTTTCTCAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.23
Consensus pattern (26 bp):
AAGCATAGAAAAATTTGGCTTCAAAA
Found at i:35708788 original size:19 final size:19
Alignment explanation
Indices: 35708764--35708801 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
35708754 CATCCAAACA
*
35708764 CCAGAAAAATAAATCATTT
1 CCAGAAAAAAAAATCATTT
35708783 CCAGAAAAAAAAATCATTT
1 CCAGAAAAAAAAATCATTT
35708802 TTAAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.24
Consensus pattern (19 bp):
CCAGAAAAAAAAATCATTT
Found at i:35709340 original size:7 final size:7
Alignment explanation
Indices: 35709294--35709352 Score: 52
Period size: 7 Copynumber: 8.3 Consensus size: 7
35709284 TTTAATCAAA
*
35709294 AAATTTT
1 AAATTAT
35709301 AAATATAT
1 AAAT-TAT
35709309 AAAATTAT
1 -AAATTAT
35709317 AAA--A-
1 AAATTAT
35709321 AAATTAAAT
1 AAATT--AT
35709330 AAATTAT
1 AAATTAT
35709337 AAATTAT
1 AAATTAT
35709344 AAATTAT
1 AAATTAT
35709351 AA
1 AA
35709353 TAAAAATATT
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
4 3 0.07
5 1 0.02
7 25 0.57
8 6 0.14
9 9 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (7 bp):
AAATTAT
Found at i:35709371 original size:37 final size:35
Alignment explanation
Indices: 35709291--35709359 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
35709281 TTATTTAATC
*
35709291 AAAAAATTTTAAATATATAAAATTATAAAAAAATT
1 AAAAAATTATAAATATATAAAATTATAAAAAAATT
35709326 AAATAAATTATAAAT-TAT-AAATTATAATAAAAAT
1 AAA-AAATTATAAATATATAAAATTATAA-AAAAAT
35709360 ATTATAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 9 0.29
35 12 0.39
36 10 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (35 bp):
AAAAAATTATAAATATATAAAATTATAAAAAAATT
Found at i:35709476 original size:9 final size:9
Alignment explanation
Indices: 35709445--35709506 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
35709435 AATTTTTTAA
35709445 AAAAATTAT
1 AAAAATTAT
35709454 AAAAACATTA-
1 -AAAA-ATTAT
*
35709464 AAAAGTTAT
1 AAAAATTAT
35709473 AAAAATTAT
1 AAAAATTAT
**
35709482 AAAAACAAT
1 AAAAATTAT
35709491 AAAAAGTTAT
1 AAAAA-TTAT
35709501 AGAAAA
1 A-AAAA
35709507 ATTTTGTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
8 3 0.07
9 24 0.57
10 7 0.17
11 8 0.19
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (9 bp):
AAAAATTAT
Found at i:35709476 original size:28 final size:28
Alignment explanation
Indices: 35709445--35709506 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
35709435 AATTTTTTAA
*
35709445 AAAAATTATAAAAACATTAAAAAGTTAT
1 AAAAATTATAAAAACAATAAAAAGTTAT
35709473 AAAAATTATAAAAACAATAAAAAGTTAT
1 AAAAATTATAAAAACAATAAAAAGTTAT
35709501 AGAAAA
1 A-AAAA
35709507 ATTTTGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (28 bp):
AAAAATTATAAAAACAATAAAAAGTTAT
Found at i:35710021 original size:18 final size:18
Alignment explanation
Indices: 35710000--35710037 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
35709990 TTTTTTTAAA
* *
35710000 TATAAATTTTTTTATTTT
1 TATAAATATTTTTAATTT
35710018 TATAAATATTTTTAATTT
1 TATAAATATTTTTAATTT
35710036 TA
1 TA
35710038 ATTTTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TATAAATATTTTTAATTT
Found at i:35710029 original size:19 final size:18
Alignment explanation
Indices: 35710000--35710036 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
35709990 TTTTTTTAAA
*
35710000 TATAAATTTTTTTATTTT
1 TATAAATTTTTTAATTTT
35710018 TATAAATATTTTTAATTTT
1 TATAAAT-TTTTTAATTTT
35710037 AATTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATAAATTTTTTAATTTT
Found at i:35710333 original size:14 final size:14
Alignment explanation
Indices: 35710314--35710341 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
35710304 AGATTGGTCT
35710314 TGTGTGGGGTGCCA
1 TGTGTGGGGTGCCA
35710328 TGTGTGGGGTGCCA
1 TGTGTGGGGTGCCA
35710342 ACTGAGGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.14, G:0.50, T:0.29
Consensus pattern (14 bp):
TGTGTGGGGTGCCA
Found at i:35714319 original size:34 final size:34
Alignment explanation
Indices: 35714281--35714389 Score: 137
Period size: 34 Copynumber: 3.2 Consensus size: 34
35714271 TTAATTCGTG
* * *
35714281 ATAAGCATATTAATTACTAACGTATTGATCAGTT
1 ATAAGCATATTAATTGCTAACATATTGATCTGTT
* * **
35714315 ATAAGCATATTATTTGTTATTATATTGATCTGTT
1 ATAAGCATATTAATTGCTAACATATTGATCTGTT
* *
35714349 ATAAGCATATTAATTGCTACCATATTGATCTTTT
1 ATAAGCATATTAATTGCTAACATATTGATCTGTT
35714383 ATAAGCA
1 ATAAGCA
35714390 AGCCATATTG
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 63 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (34 bp):
ATAAGCATATTAATTGCTAACATATTGATCTGTT
Found at i:35715851 original size:19 final size:20
Alignment explanation
Indices: 35715815--35715852 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
35715805 GTAACTTTTA
* *
35715815 TTTTTTAAAATTTCTTTGAT
1 TTTTTTAAAATATATTTGAT
35715835 TTTTTTAAAA-ATATTTGA
1 TTTTTTAAAATATATTTGA
35715853 ATAGTTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTTTTAAAATATATTTGAT
Found at i:35717890 original size:36 final size:36
Alignment explanation
Indices: 35717850--35717932 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
35717840 TGATGATTTT
* * *
35717850 TGTGAAAG-AGAATATGTGGGTTTACTGTTCATGCCA
1 TGTGAAAGTA-AATATGTGAGTATACTATTCATGCCA
* **
35717886 TGTGACAGTAAATATGTGAGTATGTTATTCATGCCA
1 TGTGAAAGTAAATATGTGAGTATACTATTCATGCCA
*
35717922 TGTGACAGTAA
1 TGTGAAAGTAA
35717933 TTATAATGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
36 39 0.98
37 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (36 bp):
TGTGAAAGTAAATATGTGAGTATACTATTCATGCCA
Found at i:35723791 original size:35 final size:36
Alignment explanation
Indices: 35723729--35723800 Score: 110
Period size: 35 Copynumber: 2.0 Consensus size: 36
35723719 TGTGAAAGAG
* *
35723729 AATATGTGGGTATGTTATTCGTTCCATG-GACAGTA
1 AATATGTGGGTATGTTATTCATGCCATGTGACAGTA
*
35723764 AATATGTGGGTATGTTATTCATGCCATGTGATAGTA
1 AATATGTGGGTATGTTATTCATGCCATGTGACAGTA
35723800 A
1 A
35723801 TTGTAATGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 26 0.79
36 7 0.21
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (36 bp):
AATATGTGGGTATGTTATTCATGCCATGTGACAGTA
Found at i:35724268 original size:40 final size:40
Alignment explanation
Indices: 35724217--35724332 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 40
35724207 GTTTGGACAA
* *
35724217 AAAACGTCGCTAAAAATCGAGCATTAGCGGCGC-TTTACG
1 AAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTTACG
* *
35724256 TAAAACGCCGCTAAAGATCGAGCATTAGCAGCGCTTTTATG
1 -AAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTTACG
* *
35724297 AAAGCGCCGCTAAAAAT-GAGCATTAGCAGCGGTTTT
1 AAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTT
35724333 TGGAAAAACG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 18 0.26
40 45 0.66
41 5 0.07
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTTACG
Found at i:35724351 original size:39 final size:40
Alignment explanation
Indices: 35724216--35724352 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 40
35724206 CGTTTGGACA
* * * **
35724216 AAAAACGTCGCTAAAAATCGAGCATTAGCGGCGCTTTACG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGGTTTTTG
* * *
35724256 TAAAACGCCGCTAAAGATCGAGCATTAGCAGCGCTTTTATG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGGTTTT-TG
*
35724297 -AAAGCGCCGCTAAAAAT-GAGCATTAGCAGCGGTTTTTGG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGGTTTTT-G
* *
35724336 AAAAACGTCGCAAAAAA
1 AAAAACGCCGCTAAAAA
35724353 CCTAAGCCTT
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 19 0.23
40 61 0.74
41 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAATCGAGCATTAGCAGCGGTTTTTG
Found at i:35724445 original size:41 final size:41
Alignment explanation
Indices: 35724369--35724562 Score: 219
Period size: 41 Copynumber: 4.7 Consensus size: 41
35724359 CCTTTCGGGG
* **
35724369 CTTTAGCGACGTTTTTAAAAACAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGGAAA-AGCGCCGCTAATGCTCAGAT
* ** *
35724411 CTTTAACAACGTTTTTGGAAAGGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* * *
35724452 CTTTAGCGGTGTTTTTGGAAAAGTGCCGCTAATGTTCAGAT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* * *
35724493 CTTTAGCGGCGTTTTTGGAAAACCACCGCTAATGCTC-GAGG
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGA-T
* **
35724534 CTTTAGTGGCGTTTTTAAAAAAGCGCCGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGC
35724563 AAAAACATTT
Statistics
Matches: 128, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
40 2 0.02
41 109 0.85
42 17 0.13
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
Found at i:35725045 original size:7 final size:7
Alignment explanation
Indices: 35725035--35725069 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
35725025 TAAGGTTTAT
35725035 GGGTTAG
1 GGGTTAG
35725042 GGGTTAG
1 GGGTTAG
35725049 GGGTTAG
1 GGGTTAG
* *
35725056 AGGTTAA
1 GGGTTAG
35725063 GGGTTAG
1 GGGTTAG
35725070 AGATTTAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.20, C:0.00, G:0.51, T:0.29
Consensus pattern (7 bp):
GGGTTAG
Found at i:35725167 original size:63 final size:63
Alignment explanation
Indices: 35725098--35725229 Score: 228
Period size: 63 Copynumber: 2.1 Consensus size: 63
35725088 TTTAGTGTCA
* *
35725098 GGTTAGGGTTTAAGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAATGTTTAGG
1 GGTTAGGGTTTAAGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAAG
* *
35725161 GGTTAGGGTTTATGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAAGGTTTAAG
1 GGTTAGGGTTTAAGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAAG
35725224 GGTTAG
1 GGTTAG
35725230 TTGTTAAGGG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (63 bp):
GGTTAGGGTTTAAGATTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAAGGTTTAAG
Found at i:35725639 original size:18 final size:18
Alignment explanation
Indices: 35725616--35725651 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
35725606 TTGAGTTTTT
35725616 GAATTCGAATAACTCGAA
1 GAATTCGAATAACTCGAA
*
35725634 GAATTCGAATAATTCGAA
1 GAATTCGAATAACTCGAA
35725652 TATCAAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (18 bp):
GAATTCGAATAACTCGAA
Found at i:35725652 original size:9 final size:9
Alignment explanation
Indices: 35725617--35725653 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
35725607 TGAGTTTTTG
35725617 AATTCGAAT
1 AATTCGAAT
* *
35725626 AACTCGAAG
1 AATTCGAAT
35725635 AATTCGAAT
1 AATTCGAAT
35725644 AATTCGAAT
1 AATTCGAAT
35725653 A
1 A
35725654 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.27
Consensus pattern (9 bp):
AATTCGAAT
Found at i:35727529 original size:147 final size:144
Alignment explanation
Indices: 35727365--35727651 Score: 389
Period size: 147 Copynumber: 2.0 Consensus size: 144
35727355 TTTAGTATAA
* * * * * *
35727365 CAAAACAGTGTCGTTTTATTCGAAATGAAATAAGTTTTTGTTG-CGTTTTTGATAAAGACT-CCG
1 CAAAACAGTGTCATTTTATTCAAAATGAAATAAGTTTTTG-TGACATTTCTCATAAA-AATACCG
* * *
35727428 CAAAAGCTAAGCAATAGCGGCGTTTTTATAAAAAAAGACACAAAAAATAATTTTACTTTTAAAAA
64 CAAAAGCTAAACAATAGCGGCGTTTTTATAAAAAAACACAC-AAAAA-AA-TTTACTTTAAAAAA
35727493 ATAGCGCCATTTTATTTAG
126 ATAGCGCCATTTTATTTAG
*
35727512 CAAAACAGTGTCATTTTATTCAAAATGAAATAATTTTTTGTGACATTTCTCATAAAAATACCGCA
1 CAAAACAGTGTCATTTTATTCAAAATGAAATAAGTTTTTGTGACATTTCTCATAAAAATACCGCA
* * * *
35727577 AAAGGTAAACAATAGCGGCGTTTTTATTAAAAACCCCACAAAAAAATTTACTTTAAAAAAATAGC
66 AAAGCTAAACAATAGCGGCGTTTTTATAAAAAAACACACAAAAAAATTTACTTTAAAAAAATAGC
35727642 GCCATTTTAT
131 GCCATTTTAT
35727652 AAAATCCCCT
Statistics
Matches: 124, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
144 28 0.23
145 2 0.02
146 9 0.07
147 85 0.69
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (144 bp):
CAAAACAGTGTCATTTTATTCAAAATGAAATAAGTTTTTGTGACATTTCTCATAAAAATACCGCA
AAAGCTAAACAATAGCGGCGTTTTTATAAAAAAACACACAAAAAAATTTACTTTAAAAAAATAGC
GCCATTTTATTTAG
Found at i:35731153 original size:4 final size:4
Alignment explanation
Indices: 35731144--35731177 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35731134 AAGTTTTATT
35731144 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35731178 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35731185 original size:22 final size:22
Alignment explanation
Indices: 35731127--35731186 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35731117 AAGTGGCCCA
*
35731127 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35731151 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35731172 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35731187 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35732130 original size:4 final size:4
Alignment explanation
Indices: 35732121--35732154 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35732111 AAGTTTTATT
35732121 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35732155 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35732162 original size:22 final size:22
Alignment explanation
Indices: 35732104--35732163 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35732094 AAGTGGCCCA
*
35732104 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35732128 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35732149 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35732164 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35733107 original size:4 final size:4
Alignment explanation
Indices: 35733098--35733131 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35733088 AAGTTTTATT
35733098 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35733132 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35733139 original size:22 final size:22
Alignment explanation
Indices: 35733081--35733140 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35733071 AAGTGGCCCA
*
35733081 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35733105 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35733126 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35733141 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35734085 original size:4 final size:4
Alignment explanation
Indices: 35734076--35734109 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35734066 AAGTTTTATT
35734076 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35734110 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35734117 original size:22 final size:22
Alignment explanation
Indices: 35734059--35734118 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35734049 AAGTGGCCCA
*
35734059 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35734083 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35734104 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35734119 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35734124 original size:978 final size:978
Alignment explanation
Indices: 35731006--35739798 Score: 17480
Period size: 978 Copynumber: 9.0 Consensus size: 978
35730996 CGATGCCCTT
35731006 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
1 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
35731071 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
66 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
35731136 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
131 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
35731201 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
196 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
35731266 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
261 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
35731331 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
326 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
* *
35731396 TTCTTCAAAGATTTTCTCTTGTGTTTTCTTTAGAAGTTGTTTTAACAATC-TTTTGATTGTGGGA
391 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
35731460 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
456 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
35731525 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
521 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
35731590 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
586 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
35731655 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
651 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
35731720 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
716 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
35731785 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
781 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
35731850 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
846 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
35731915 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
911 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
35731980 GCA
976 GCA
35731983 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
1 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
35732048 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
66 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
35732113 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
131 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
35732178 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
196 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
35732243 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
261 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
35732308 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
326 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
35732373 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
391 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
35732438 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
456 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
35732503 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
521 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
35732568 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
586 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
35732633 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTC-T
651 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
35732697 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
716 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
35732762 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
781 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
35732827 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
846 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
35732892 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
911 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
35732957 GCA
976 GCA
35732960 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
1 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
35733025 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
66 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
35733090 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
131 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
35733155 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
196 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
35733220 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
261 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
35733285 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
326 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
35733350 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
391 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
35733415 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
456 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
35733480 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
521 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
35733545 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
586 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
35733610 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
651 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
35733675 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
716 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
35733740 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
781 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
35733805 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
846 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
35733870 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
911 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
35733935 GCA
976 GCA
35733938 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
1 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
35734003 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
66 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
35734068 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
131 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
35734133 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
196 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
35734198 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
261 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
35734263 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
326 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
35734328 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
391 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
35734393 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
456 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
35734458 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
521 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
35734523 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
586 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
35734588 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
651 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
35734653 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
716 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
35734718 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
781 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
35734783 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
846 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
35734848 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
911 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
35734913 GCA
976 GCA
35734916 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
1 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
35734981 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
66 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
35735046 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
131 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
35735111 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
196 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
35735176 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
261 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
35735241 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
326 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
35735306 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
391 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
35735371 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
456 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
35735436 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
521 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
35735501 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
586 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
35735566 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
651 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
35735631 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
716 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
35735696 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
781 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
35735761 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
846 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
35735826 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
911 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
35735891 GCA
976 GCA
35735894 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
1 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
35735959 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
66 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
35736024 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
131 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
35736089 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
196 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
35736154 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
261 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
35736219 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
326 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
35736284 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
391 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
35736349 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
456 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
35736414 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
521 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
35736479 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
586 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
35736544 AGCCTTTTTCTATCTTAAGGAATCAGCCC-AAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
651 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
35736608 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
716 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
35736673 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
781 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
35736738 TTTGGGGATTTTATTTCAGATCTGAAAATTC-AAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
846 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
35736802 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
911 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
35736867 GCA
976 GCA
35736870 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
1 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
35736935 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
66 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
35737000 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
131 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
35737065 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
196 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
35737130 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
261 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
35737195 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
326 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
35737260 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
391 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
35737325 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
456 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
35737390 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
521 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
35737455 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
586 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
35737520 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
651 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
35737585 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
716 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
35737650 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
781 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
35737715 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
846 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
35737780 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
911 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
35737845 GCA
976 GCA
35737848 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
1 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
35737913 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
66 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
35737978 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
131 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
*
35738043 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATACTAAAATAATTAGGAGTTTTTTTTAGTTTTA
196 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
35738108 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
261 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
35738173 CCCTACATTACATTACAATTACATT-AAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
326 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
35738237 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
391 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
35738302 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
456 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
35738367 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
521 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
35738432 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
586 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
35738497 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
651 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
35738562 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
716 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
35738627 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
781 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
35738692 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
846 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
35738757 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
911 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
35738822 GCA
976 GCA
*
35738825 ATGATACGAGTCACAAAAGCCCAAATTATTGAAGGCGAGGCCCAATAAGAAGATTCCAAG-CCAA
1 ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
35738889 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
66 TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
35738954 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
131 GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
35739019 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
196 TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
35739084 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
261 GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
35739149 CCCTACATTACATTACAATTACATT-AAAATTTCAGATTTGA-TTGAGTG-AAATTCTCTTTGAG
326 CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
35739211 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
391 TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
35739276 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
456 GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
35739341 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
521 AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
35739406 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
586 TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
35739471 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
651 AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
35739536 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
716 TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
35739601 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
781 CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
35739666 TTTGGGGATTTTATTTCAGATCTGAAAATTC-AAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
846 TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
35739730 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
911 AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
35739795 GCA
976 GCA
35739798 A
1 A
35739799 CCCATATCAT
Statistics
Matches: 7807, Mismatches: 5, Indels: 12
1.00 0.00 0.00
Matches are distributed among these distances:
973 102 0.01
974 500 0.06
975 7 0.00
976 1084 0.14
977 2493 0.32
978 3621 0.46
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (978 bp):
ATGATACGAGTCACAAAAGCCCAAATTCTTGAAGGCGAGGCCCAATAAGAAGATTCCAAGCCCAA
TCAAGAAATCCACCCATACTTAGTTGAAAATCAGGCCAAATTGTCAAAGTGGCCCAAGTTGTAAA
GTTTTATTTTTATTTATTTATTTATTTATTTTATTTAGTTTAAATTTTTATATTCAGTCCAAGAG
TCCCAAATAAAAGACCCTTGGCCGAATTTCCATATTAAAATAATTAGGAGTTTTTTTTAGTTTTA
GTTTTAGTGTTCTAATTAAATTAGGAAAACATTTGAAAGGCCTATTTATATGGCTTGGCCAGCCA
CCCTACATTACATTACAATTACATTAAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTTGAG
TTCTTCAAGGATTTTCTCTTGAGTTTTCTTTAGAAGTTGTTTTAACAATCTTTTTGATTGTGGGA
GCCATCTTCAACCTTCTTCTTGCCATTGATATTCTTTGGAGGGGAGATTAGAGCCGTTTGAAGGG
AGTTGTGAGATCTTTCGAGATTTCAAGGCTTCTTAGGACTTATCTTTTAATTTCTTACTGTTAAT
TCTTTCTTTATTTCTACTTGTGCTGAATCATTATCTAATCTATTTTCTGTTCTTATTGTGTTTTC
AGCCTTTTTCTATCTTAAGGAATCAGCCCAAAAATCCCCAATTTCTAGGGTTTTTCCATACTCTT
TTTGGGTGAAATTAGATTGTCGAAATTTGGGGAAAACTATCTTGGTGTTCAATTGGGCAGAATCA
CAATCTCCTTGAGGGTTTCAAGAACCCTAACACTTATTTCTATTCTCAATTTGATTCTTTGCTGA
TTTGGGGATTTTATTTCAGATCTGAAAATTCAAAAATCTAATCTTTTAATTTTCTGTTTCGTTTC
AATCTAATTGTTTAGGGTTTTCGTAGGAGTTTCTCGTGACTTGGCAACTCGATCTTGGTCCGCGC
GCA
Found at i:35735063 original size:4 final size:4
Alignment explanation
Indices: 35735054--35735087 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35735044 AAGTTTTATT
35735054 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35735088 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35735095 original size:22 final size:22
Alignment explanation
Indices: 35735037--35735096 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35735027 AAGTGGCCCA
*
35735037 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35735061 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35735082 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35735097 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35736041 original size:4 final size:4
Alignment explanation
Indices: 35736032--35736065 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35736022 AAGTTTTATT
35736032 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35736066 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35736073 original size:22 final size:22
Alignment explanation
Indices: 35736015--35736074 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35736005 AAGTGGCCCA
*
35736015 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35736039 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35736060 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35736075 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35737017 original size:4 final size:4
Alignment explanation
Indices: 35737008--35737041 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35736998 AAGTTTTATT
35737008 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35737042 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35737049 original size:22 final size:22
Alignment explanation
Indices: 35736991--35737050 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35736981 AAGTGGCCCA
*
35736991 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35737015 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35737036 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35737051 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35737995 original size:4 final size:4
Alignment explanation
Indices: 35737986--35738019 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35737976 AAGTTTTATT
35737986 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35738020 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35738027 original size:22 final size:22
Alignment explanation
Indices: 35737969--35738028 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35737959 AAGTGGCCCA
*
35737969 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35737993 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35738014 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35738029 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35738971 original size:4 final size:4
Alignment explanation
Indices: 35738962--35738995 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35738952 AAGTTTTATT
35738962 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35738996 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35739003 original size:22 final size:22
Alignment explanation
Indices: 35738945--35739004 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35738935 AAGTGGCCCA
*
35738945 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35738969 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35738990 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35739005 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35741334 original size:27 final size:27
Alignment explanation
Indices: 35741293--35741344 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
35741283 ACAAGTGAGG
35741293 AAAAAGAGAAAGAGAATGAAAAAGAGC
1 AAAAAGAGAAAGAGAATGAAAAAGAGC
** *
35741320 AAAAAGAGATTGAGAGTGAAAAAGA
1 AAAAAGAGAAAGAGAATGAAAAAGA
35741345 AATTGAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.63, C:0.02, G:0.27, T:0.08
Consensus pattern (27 bp):
AAAAAGAGAAAGAGAATGAAAAAGAGC
Found at i:35742754 original size:4 final size:4
Alignment explanation
Indices: 35742745--35742778 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
35742735 AAGTTTTATT
35742745 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
35742779 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:35742786 original size:22 final size:22
Alignment explanation
Indices: 35742728--35742787 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
35742718 AAGTGGCCCA
*
35742728 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
35742752 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
35742773 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
35742788 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:35744579 original size:43 final size:43
Alignment explanation
Indices: 35744493--35744695 Score: 228
Period size: 43 Copynumber: 4.7 Consensus size: 43
35744483 TTTTTGCTAG
* * * *
35744493 AAGCGCCGCTAAAGGT-TTGTTTTTTAGTGGCGTTTGTGATAA
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
* * *
35744535 AAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGATAA
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
* * * * *
35744578 AAGCGTCGCTAAATGTCTTGGTCTTTAGCGGCATTTTTGGGAA
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
* * * * * *
35744621 AAGTGCCGCTCAAGGTCGTGATCTTTAGCAGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
*
35744664 CAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGC
1 AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGC
35744696 ATTTTTTCCA
Statistics
Matches: 132, Mismatches: 28, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 16 0.12
43 116 0.88
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAA
Found at i:35747764 original size:68 final size:68
Alignment explanation
Indices: 35747655--35747926 Score: 330
Period size: 68 Copynumber: 4.0 Consensus size: 68
35747645 ATTAGAAATC
* ** * *
35747655 CACCAGGACAATAAACATCGGATCATATTGTGTAAGACCATAGTTGGGTTATGGCAACATATGGA
1 CACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGGA
35747720 GTT
66 GTT
* * * * * *
35747723 CACCAGGACAGTAACCATTGGATCATATCATGTAAGACCATAGTTGGGTTATGACAACATATGGA
1 CACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGGA
*
35747788 GTC
66 GTT
* * *
35747791 CGCCAAGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGAAACATATGGA
1 CACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGGA
35747856 G-T
66 GTT
* * * * * * *
35747858 CTTCCAGGACAATAAATATGGGATCATATAATGTAAGACCATAACTGGGCTATGGCAACAAATGA
1 C-ACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGG
35747923 AGTT
65 AGTT
35747927 TGCTAGAATG
Statistics
Matches: 176, Mismatches: 26, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
67 1 0.01
68 174 0.99
69 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.24
Consensus pattern (68 bp):
CACCAGGACAATAAACATAGGATCATATCATGTAAGACCATAGCTGGGCTATGGCAACATATGGA
GTT
Found at i:35755939 original size:27 final size:27
Alignment explanation
Indices: 35755909--35756084 Score: 185
Period size: 27 Copynumber: 6.5 Consensus size: 27
35755899 ATTGAGTCCA
* * *
35755909 CACACTCAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTACATAGTCAACTCG
* *
35755936 CACACTTAGTGCTACGTAATCAAAC-CG
1 CACACTTAGTGCTACATAGTC-AACTCG
35755963 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAGTC-AACTCG
** * *
35755991 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAGTCAACTCG
* **
35756018 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAGTCAACTCG
* *
35756045 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAGTCAACTCG
35756072 CACACTTAGTGCT
1 CACACTTAGTGCT
35756085 GTACAATTTA
Statistics
Matches: 128, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAGTCAACTCG
Found at i:35756578 original size:12 final size:12
Alignment explanation
Indices: 35756561--35756586 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
35756551 ATGGCATACT
35756561 TATGTATATATA
1 TATGTATATATA
35756573 TATGTATATATA
1 TATGTATATATA
35756585 TA
1 TA
35756587 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:35780615 original size:25 final size:25
Alignment explanation
Indices: 35780587--35780703 Score: 89
Period size: 25 Copynumber: 4.7 Consensus size: 25
35780577 TCTTGTACAT
35780587 GTATGCTCAT-ACGAGCTATGAATCG
1 GTATGCTC-TCACGAGCTATGAATCG
* *
35780612 GTATGCTCTCACAAGCTATGAATCA
1 GTATGCTCTCACGAGCTATGAATCG
* * * * *
35780637 ATATACTCTCACGAGCTGTAAATTG
1 GTATGCTCTCACGAGCTATGAATCG
* *
35780662 GTAAGCTCAT-ACGAG-T-TGAAATTG
1 GTATGCTC-TCACGAGCTATG-AATCG
*
35780686 GTAAGCTCTCACGAGCTA
1 GTATGCTCTCACGAGCTA
35780704 AAAATTGGTA
Statistics
Matches: 73, Mismatches: 13, Indels: 11
0.75 0.13 0.11
Matches are distributed among these distances:
23 2 0.03
24 20 0.27
25 50 0.68
26 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATGAATCG
Found at i:35780684 original size:24 final size:24
Alignment explanation
Indices: 35780647--35780728 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 24
35780637 ATATACTCTC
*
35780647 ACGAGCTGTAAATTGGTAAGCTCAT
1 ACGAGTTG-AAATTGGTAAGCTCAT
35780672 ACGAGTTGAAATTGGTAAGCTC-T
1 ACGAGTTGAAATTGGTAAGCTCAT
**
35780695 CACGAGCTAAAAATTGGTAAGCTCAT
1 -ACGAG-TTGAAATTGGTAAGCTCAT
*
35780721 ACAAGTTG
1 ACGAGTTG
35780729 TGGTGCGTCC
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 1 0.02
24 20 0.42
25 26 0.54
26 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (24 bp):
ACGAGTTGAAATTGGTAAGCTCAT
Found at i:35780714 original size:25 final size:25
Alignment explanation
Indices: 35780642--35780718 Score: 95
Period size: 25 Copynumber: 3.1 Consensus size: 25
35780632 AATCAATATA
**
35780642 CTCTCACGAGCTGTAAATTGGTAAG
1 CTCTCACGAGCTAAAAATTGGTAAG
**
35780667 CTCAT-ACGAG-TTGAAATTGGTAAG
1 CTC-TCACGAGCTAAAAATTGGTAAG
35780691 CTCTCACGAGCTAAAAATTGGTAAG
1 CTCTCACGAGCTAAAAATTGGTAAG
35780716 CTC
1 CTC
35780719 ATACAAGTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
23 1 0.02
24 20 0.44
25 23 0.51
26 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (25 bp):
CTCTCACGAGCTAAAAATTGGTAAG
Found at i:35783093 original size:32 final size:32
Alignment explanation
Indices: 35783026--35783094 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
35783016 TCAACATTTA
*
35783026 TTATTTTTCAGACTTTGAGCAAGCTTTGCTAT
1 TTATTTTTCAGACTTTGAGCAAGATTTGCTAT
* * * *
35783058 TTATTTTTGAGATTTTTGAGCAATATTTTCT-T
1 TTATTTTTCAGA-CTTTGAGCAAGATTTGCTAT
35783090 TTATT
1 TTATT
35783095 CTTTTGAGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 17 0.55
33 14 0.45
ACGTcount: A:0.22, C:0.10, G:0.13, T:0.55
Consensus pattern (32 bp):
TTATTTTTCAGACTTTGAGCAAGATTTGCTAT
Found at i:35786849 original size:369 final size:369
Alignment explanation
Indices: 35786170--35786910 Score: 1365
Period size: 369 Copynumber: 2.0 Consensus size: 369
35786160 GAAAGAAGAA
*
35786170 GTAATGTTGACCAACAATTATATTCAATATTTGCTCAAAAAATAACAACAGAAAGTGGTCTTTCT
1 GTAATGTTGACCAACAATTATATTCAATATTTGCTCAAAAAATAACAACAGAAAGTGATCTTTCT
*
35786235 ATTTTTCTTTGCTCGACTTTCTATCATTTGTACAAATCTACCTACCCATGATAATATTTAACGAA
66 ATTTTTCTTTGCTCGACTTTCTATCATTTGTACAAATCTACCTACCCACGATAATATTTAACGAA
*
35786300 ATCAGCTCATTTTTTGTTATATCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
131 ATCAGCTCATTTTTTGTTATACCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
35786365 GGGATCTATGATCCTTACTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTCAAGATT
196 GGGATCTATGATCCTTACTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTCAAGATT
*
35786430 GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCAGTATCTAATGATCTTTTCAAAATCGTT
261 GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCACTATCTAATGATCTTTTCAAAATCGTT
*
35786495 AAGTCTAACTCGAGTGACTCTTCTCTTGATGGGTTGGGTTGCTT
326 AAGTCTAACTCGAGTGACTCTTATCTTGATGGGTTGGGTTGCTT
* * * *
35786539 GTAATGTTGACCAACAATTATATTCAATATTTGCTTAATAAATAGCAACAGGAAGTGATCTTTCT
1 GTAATGTTGACCAACAATTATATTCAATATTTGCTCAAAAAATAACAACAGAAAGTGATCTTTCT
* *
35786604 GTTTTTCTTTGCTCGACTTTCTGTCATTTGTACAAATCTACCTACCCACGATAATATTTAACGAA
66 ATTTTTCTTTGCTCGACTTTCTATCATTTGTACAAATCTACCTACCCACGATAATATTTAACGAA
35786669 ATCAGCTCATTTTTTGTTATACCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
131 ATCAGCTCATTTTTTGTTATACCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
* *
35786734 GGGATCTATGATCCTTGCTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTTAAGATT
196 GGGATCTATGATCCTTACTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTCAAGATT
35786799 GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCACTATCTAATGATCTTTTCAAAATCGTT
261 GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCACTATCTAATGATCTTTTCAAAATCGTT
35786864 AAGTCTAACTCGAGTGACTCTTATCTTGATGGGTTGGGTTGCTT
326 AAGTCTAACTCGAGTGACTCTTATCTTGATGGGTTGGGTTGCTT
35786908 GTA
1 GTA
35786911 CTCATGTGAT
Statistics
Matches: 359, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
369 359 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (369 bp):
GTAATGTTGACCAACAATTATATTCAATATTTGCTCAAAAAATAACAACAGAAAGTGATCTTTCT
ATTTTTCTTTGCTCGACTTTCTATCATTTGTACAAATCTACCTACCCACGATAATATTTAACGAA
ATCAGCTCATTTTTTGTTATACCTTCTTTCTTTGGTACAAGTCCCACCCACTGAATGTCATAGAT
GGGATCTATGATCCTTACTTTTAACCATTGAGACTCGAGTTTCCCAGGATCAAATACTCAAGATT
GGATGAATCTCTTTTGTCCCTCGATAGAACTCTTTTCACTATCTAATGATCTTTTCAAAATCGTT
AAGTCTAACTCGAGTGACTCTTATCTTGATGGGTTGGGTTGCTT
Done.