Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 118 of 214
Found at i:35794800 original size:50 final size:50
Alignment explanation
Indices: 35794690--35794826 Score: 130
Period size: 50 Copynumber: 2.7 Consensus size: 50
35794680 TTATGAGATG
* * * * **
35794690 TCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACAATGTCTAGGACATGGCATGGGCACCGAGATAAGAAC
** * *
35794740 TCCCCCGTAAGATAATGTCTAGGACATGGCATGGGCACCGATATAAGAAC
1 TCCCATGTAAGACAATGTCTAGGACATGGCATGGGCACCGAGATAAGAAC
* * * * * *
35794790 TCTCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACAATGTCTAGGACATGGCATGGGCA
35794827 GTACAGGAAA
Statistics
Matches: 68, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
50 68 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACAATGTCTAGGACATGGCATGGGCACCGAGATAAGAAC
Found at i:35802106 original size:28 final size:28
Alignment explanation
Indices: 35802074--35802130 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
35802064 ACCATGTATA
*
35802074 TATTAACCCAAAGAAAATTGAATAATAC
1 TATTAACCCAAAGAAAATCGAATAATAC
35802102 TATTAACCCAAAGAAAATCGAATAATAC
1 TATTAACCCAAAGAAAATCGAATAATAC
35802130 T
1 T
35802131 TTTGAAGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.53, C:0.16, G:0.07, T:0.25
Consensus pattern (28 bp):
TATTAACCCAAAGAAAATCGAATAATAC
Found at i:35805005 original size:56 final size:56
Alignment explanation
Indices: 35804936--35805049 Score: 192
Period size: 56 Copynumber: 2.0 Consensus size: 56
35804926 TCTCATGGTC
*
35804936 CTGCATTTCACAACAGGACAATTGTTTCAAGTTCCAGTTTAATTGTCAATTAGTGT
1 CTGCATTTCACAACAGGACAATTGTTTCAAGTTCCAGTTCAATTGTCAATTAGTGT
* * *
35804992 CTGCATTTCACAACATGACAATTGTTTCATGTTCCAGTTCAATTGTCAGTTAGTGT
1 CTGCATTTCACAACAGGACAATTGTTTCAAGTTCCAGTTCAATTGTCAATTAGTGT
35805048 CT
1 CT
35805050 ACAATGTTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (56 bp):
CTGCATTTCACAACAGGACAATTGTTTCAAGTTCCAGTTCAATTGTCAATTAGTGT
Found at i:35807077 original size:18 final size:18
Alignment explanation
Indices: 35807043--35807076 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35807033 ATCAATATCG
*
35807043 ATTTAACATGATTAAAAT
1 ATTTAACATGATAAAAAT
35807061 ATTTAACA-GATAAAAA
1 ATTTAACATGATAAAAA
35807077 AAAACTCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (18 bp):
ATTTAACATGATAAAAAT
Found at i:35824012 original size:8 final size:8
Alignment explanation
Indices: 35823988--35824021 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
35823978 TTTTTTTGTG
35823988 AAATTTTA
1 AAATTTTA
35823996 TAAATTTTTA
1 -AAA-TTTTA
35824006 AAATTTTA
1 AAATTTTA
35824014 AAATTTTA
1 AAATTTTA
35824022 GATGTTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 13 0.54
9 6 0.25
10 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
AAATTTTA
Found at i:35824890 original size:14 final size:14
Alignment explanation
Indices: 35824871--35824923 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
35824861 TTTAAATATA
35824871 AAAAATAAAAATTT
1 AAAAATAAAAATTT
* **
35824885 AAAAATATATTTTT
1 AAAAATAAAAATTT
35824899 AAAAAATAAAAATTAT
1 -AAAAATAAAAATT-T
*
35824915 GAAAATAAA
1 AAAAATAAA
35824924 TAAAAACTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 11 0.37
15 18 0.60
16 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (14 bp):
AAAAATAAAAATTT
Found at i:35824942 original size:19 final size:18
Alignment explanation
Indices: 35824902--35824971 Score: 63
Period size: 19 Copynumber: 3.6 Consensus size: 18
35824892 TATTTTTAAA
35824902 AAATAAAAATTATGAAAA-T
1 AAATAAAAATT-T-AAAATT
35824921 AAATAAAAACTTTAAAATT
1 AAATAAAAA-TTTAAAATT
35824940 AAA-AAAATATTTTTAAAATAT
1 AAATAAAA-A--TTTAAAAT-T
35824961 AAATAAAAATT
1 AAATAAAAATT
35824972 CCAAAATTTA
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
18 8 0.18
19 17 0.39
20 10 0.23
21 5 0.11
22 4 0.09
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (18 bp):
AAATAAAAATTTAAAATT
Found at i:35824956 original size:20 final size:19
Alignment explanation
Indices: 35824878--35824971 Score: 61
Period size: 18 Copynumber: 4.8 Consensus size: 19
35824868 ATAAAAAATA
*
35824878 AAAATTTAAAAATATATTTTT
1 AAAA-TTAAAAA-AAATTTTT
* * *
35824899 AAAA--AATAAAAATTATG
1 AAAATTAAAAAAAATTTTT
*
35824916 AAAA-TAAATAAAAA-CTTT
1 AAAATTAAA-AAAAATTTTT
35824934 AAAATTAAAAAAATATTTTT
1 AAAATTAAAAAAA-ATTTTT
35824954 AAAATATAAATAAAAATT
1 AAAAT-TAAA-AAAAATT
35824972 CCAAAATTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
17 9 0.16
18 15 0.26
19 10 0.18
20 8 0.14
21 11 0.19
22 4 0.07
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (19 bp):
AAAATTAAAAAAAATTTTT
Found at i:35826518 original size:7 final size:7
Alignment explanation
Indices: 35826506--35826539 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
35826496 TGCCACATTA
35826506 TAAAAAT
1 TAAAAAT
35826513 TAAAAAT
1 TAAAAAT
35826520 TAAAAAT
1 TAAAAAT
35826527 TAAAAAT
1 TAAAAAT
35826534 TAAAAA
1 TAAAAA
35826540 AAATATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
TAAAAAT
Found at i:35827564 original size:11 final size:11
Alignment explanation
Indices: 35827550--35827602 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
35827540 AAATAATGAT
*
35827550 AAAACAATAGG
1 AAAACAATAGC
* *
35827561 AAAACAACAAC
1 AAAACAATAGC
*
35827572 AAAACAAT-GA
1 AAAACAATAGC
35827582 AAAACAATAGC
1 AAAACAATAGC
35827593 AAAACAATAG
1 AAAACAATAG
35827603 TTTTTTTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
10 8 0.24
11 26 0.76
ACGTcount: A:0.68, C:0.15, G:0.09, T:0.08
Consensus pattern (11 bp):
AAAACAATAGC
Found at i:35827587 original size:21 final size:22
Alignment explanation
Indices: 35827550--35827602 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
35827540 AAATAATGAT
*
35827550 AAAACAATAGGAAAACAACAAC
1 AAAACAATAGAAAAACAACAAC
* *
35827572 AAAACAAT-GAAAAACAATAGC
1 AAAACAATAGAAAAACAACAAC
35827593 AAAACAATAG
1 AAAACAATAG
35827603 TTTTTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.68, C:0.15, G:0.09, T:0.08
Consensus pattern (22 bp):
AAAACAATAGAAAAACAACAAC
Found at i:35827591 original size:32 final size:33
Alignment explanation
Indices: 35827533--35827599 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 33
35827523 ATAGTGAAAT
* *
35827533 AACAACAAAATAATGATAAAACAATAGGAAAAC
1 AACAACAAAACAATGATAAAACAATAGCAAAAC
35827566 AACAACAAAACAATGA-AAAACAATAGCAAAAC
1 AACAACAAAACAATGATAAAACAATAGCAAAAC
35827598 AA
1 AA
35827600 TAGTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.53
33 15 0.47
ACGTcount: A:0.69, C:0.15, G:0.07, T:0.09
Consensus pattern (33 bp):
AACAACAAAACAATGATAAAACAATAGCAAAAC
Found at i:35828279 original size:18 final size:17
Alignment explanation
Indices: 35828252--35828306 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 17
35828242 TTTGAATTTT
*
35828252 ATTTAATATTTTTATAAA
1 ATTTATTATTTTT-TAAA
35828270 ATTTATTATTTATTTACAA
1 ATTTATTATTT-TTTA-AA
*
35828289 ATTTATAATTTTTTAAA
1 ATTTATTATTTTTTAAA
35828306 A
1 A
35828307 ATATTTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 3 0.09
18 16 0.48
19 14 0.42
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTATTATTTTTTAAA
Found at i:35828291 original size:50 final size:47
Alignment explanation
Indices: 35828222--35828321 Score: 112
Period size: 49 Copynumber: 2.1 Consensus size: 47
35828212 TTTATTTATT
** * * *
35828222 TTTATTTTTATTTTTAAATTTTTGAATTTTATTTAATAT-TTTTATAAAA
1 TTTATTTTTATTTACAAATTTAT-AATTTT-TTAAAAATATTTT-TAAAA
35828271 TTTATTATTTATTTACAAATTTATAATTTTTTAAAAATATTTTTAAAA
1 TTTATT-TTTATTTACAAATTTATAATTTTTTAAAAATATTTTTAAAA
35828319 TTT
1 TTT
35828322 TAAAAAATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
48 14 0.32
49 16 0.36
50 14 0.32
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (47 bp):
TTTATTTTTATTTACAAATTTATAATTTTTTAAAAATATTTTTAAAA
Found at i:35828308 original size:18 final size:18
Alignment explanation
Indices: 35828255--35828308 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
35828245 GAATTTTATT
35828255 TAATATTTTTATAAAATTTA
1 TAAT-TTTTTA-AAAATTTA
* *
35828275 TTATTTATTTACAAATTTA
1 TAATTT-TTTAAAAATTTA
35828294 TAATTTTTTAAAAAT
1 TAATTTTTTAAAAAT
35828309 ATTTTTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 8 0.28
19 14 0.48
20 7 0.24
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTTTTTAAAAATTTA
Found at i:35828336 original size:22 final size:21
Alignment explanation
Indices: 35828298--35828341 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
35828288 AATTTATAAT
* *
35828298 TTTTTAAAAATATTTTTAAAA
1 TTTTAAAAAATAGTTTTAAAA
*
35828319 TTTTAAAAAATAAGTTTTGAAA
1 TTTTAAAAAAT-AGTTTTAAAA
35828341 T
1 T
35828342 AAATGAACCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (21 bp):
TTTTAAAAAATAGTTTTAAAA
Found at i:35832051 original size:58 final size:58
Alignment explanation
Indices: 35831982--35832103 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 58
35831972 ATAAAGAAAT
* *
35831982 AATCATACCAATGTTGATTGAAACACAGAGTAGTCAATCTCTCTATTGGGATAACGAG
1 AATCATACCAATGTTGATTGAAACACAGAGTAGTAAATCTCTCGATTGGGATAACGAG
* * *
35832040 AATCATACCAATGTTGATTGAAATAGAGAGTAGTAAATCTCTCGATTTGGATAACGAG
1 AATCATACCAATGTTGATTGAAACACAGAGTAGTAAATCTCTCGATTGGGATAACGAG
35832098 AATCAT
1 AATCAT
35832104 TGCTTGTAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.29
Consensus pattern (58 bp):
AATCATACCAATGTTGATTGAAACACAGAGTAGTAAATCTCTCGATTGGGATAACGAG
Found at i:35835805 original size:16 final size:16
Alignment explanation
Indices: 35835786--35835820 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
35835776 TTCTTGGAAA
35835786 ACATAACAGTTTGCAC
1 ACATAACAGTTTGCAC
35835802 ACATAACAGTTTGCAC
1 ACATAACAGTTTGCAC
35835818 ACA
1 ACA
35835821 AGTTATGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.40, C:0.26, G:0.11, T:0.23
Consensus pattern (16 bp):
ACATAACAGTTTGCAC
Found at i:35838092 original size:72 final size:73
Alignment explanation
Indices: 35837964--35838102 Score: 262
Period size: 72 Copynumber: 1.9 Consensus size: 73
35837954 AAACATGGTC
*
35837964 AAAATATACCTATACCAACAAGGCACTCGTCATTTATGCTACATTTACATTCCAAACTTATATAA
1 AAAATATACCTATACCAACAAGGCACTCGTCATTTATGCTACATTTACATTCCAAACTTACATAA
35838029 TTCTAGTT
66 TTCTAGTT
35838037 AAAATATACCTATACCAACAAGGCACTC-TCATTTATGCTACATTTACATTCCAAACTTACATAA
1 AAAATATACCTATACCAACAAGGCACTCGTCATTTATGCTACATTTACATTCCAAACTTACATAA
35838101 TT
66 TT
35838103 GTAGCATATC
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
72 37 0.57
73 28 0.43
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (73 bp):
AAAATATACCTATACCAACAAGGCACTCGTCATTTATGCTACATTTACATTCCAAACTTACATAA
TTCTAGTT
Found at i:35841150 original size:22 final size:22
Alignment explanation
Indices: 35841105--35841299 Score: 225
Period size: 22 Copynumber: 8.7 Consensus size: 22
35841095 TTATCACCCA
*
35841105 CCAAACACAACCAATCATAGCCT
1 CCAAACACAACCAAT-TTAGCCT
*
35841128 CCAACCACAACCAATTTAGCCT
1 CCAAACACAACCAATTTAGCCT
*
35841150 CCAAACACAATCAATTATAGCCT
1 CCAAACACAACCAATT-TAGCCT
35841173 CCAAACACAACCAATTTA-CCTT
1 CCAAACACAACCAATTTAGCC-T
35841195 CCAAACACAACCAATTTA-CCTT
1 CCAAACACAACCAATTTAGCC-T
*
35841217 CCAAACACAACCAATCATAGCCT
1 CCAAACACAACCAAT-TTAGCCT
35841240 CCAAACACAACCAATTT-GCCCT
1 CCAAACACAACCAATTTAG-CCT
* * * *
35841262 TCGAACACAACCAAGTGTACCCT
1 CCAAACACAACCAA-TTTAGCCT
*
35841285 CCAAAGACAACCAAT
1 CCAAACACAACCAAT
35841300 ATACCTTTCA
Statistics
Matches: 151, Mismatches: 14, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.02
22 77 0.51
23 69 0.46
24 2 0.01
ACGTcount: A:0.41, C:0.37, G:0.05, T:0.17
Consensus pattern (22 bp):
CCAAACACAACCAATTTAGCCT
Found at i:35841155 original size:45 final size:44
Alignment explanation
Indices: 35841105--35841302 Score: 222
Period size: 45 Copynumber: 4.4 Consensus size: 44
35841095 TTATCACCCA
*
35841105 CCAAACACAACCAATCATAGCCTCCAACCACAACCAATTTAGCCT
1 CCAAACACAACCAAT-ATAGCCTCCAAACACAACCAATTTAGCCT
*
35841150 CCAAACACAATCAATTATAGCCTCCAAACACAACCAATTTA-CCTT
1 CCAAACACAACCAA-TATAGCCTCCAAACACAACCAATTTAGCC-T
* *
35841195 CCAAACACAACCAATTTA-CCTTCCAAACACAACCAATCATAGCCT
1 CCAAACACAACCAATATAGCC-TCCAAACACAACCAAT-TTAGCCT
* * * * *
35841240 CCAAACACAACCAAT-TTGCCCTTCGAACACAACCAAGTGTACCCT
1 CCAAACACAACCAATATAG-CCTCCAAACACAACCAA-TTTAGCCT
*
35841285 CCAAAGACAACCAATATA
1 CCAAACACAACCAATATA
35841303 CCTTTCAACA
Statistics
Matches: 132, Mismatches: 12, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
43 2 0.02
44 22 0.17
45 101 0.77
46 7 0.05
ACGTcount: A:0.41, C:0.36, G:0.05, T:0.18
Consensus pattern (44 bp):
CCAAACACAACCAATATAGCCTCCAAACACAACCAATTTAGCCT
Found at i:35841305 original size:112 final size:112
Alignment explanation
Indices: 35841105--35841306 Score: 307
Period size: 112 Copynumber: 1.8 Consensus size: 112
35841095 TTATCACCCA
* * * *
35841105 CCAAACACAACCAATCATAGCCTCCAACCACAACCAATTTAGCCTCCAAACACAATCAATTATAG
1 CCAAACACAACCAATCATAGCCTCCAAACACAACCAATTTAGCCTCCAAACACAACCAAGTATAC
*
35841170 CCTCCAAACACAACCAATTTACCTTCCAAACACAACCAATTTACCTT
66 CCTCCAAACACAACCAATATACCTTCCAAACACAACCAATTTACCTT
* * *
35841217 CCAAACACAACCAATCATAGCCTCCAAACACAACCAATTT-GCCCTTCGAACACAACCAAGTGTA
1 CCAAACACAACCAATCATAGCCTCCAAACACAACCAATTTAG-CCTCCAAACACAACCAAGTATA
*
35841281 CCCTCCAAAGACAACCAATATACCTT
65 CCCTCCAAACACAACCAATATACCTT
35841307 TCAACATATC
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
111 1 0.01
112 79 0.99
ACGTcount: A:0.41, C:0.37, G:0.04, T:0.18
Consensus pattern (112 bp):
CCAAACACAACCAATCATAGCCTCCAAACACAACCAATTTAGCCTCCAAACACAACCAAGTATAC
CCTCCAAACACAACCAATATACCTTCCAAACACAACCAATTTACCTT
Found at i:35845008 original size:23 final size:23
Alignment explanation
Indices: 35844980--35845149 Score: 131
Period size: 23 Copynumber: 7.6 Consensus size: 23
35844970 AGTTACTTGT
*
35844980 AATGCCTTTGTGGCGTATCCTGA
1 AATGCCTTTGTGGCGTATTCTGA
* *
35845003 AATGCCTTTGTGGCGAATTCTGT
1 AATGCCTTTGTGGCGTATTCTGA
*
35845026 AATGCCTTTGTGGCGTATT-GGA
1 AATGCCTTTGTGGCGTATTCTGA
* * *
35845048 TAATGCCTTTGTGACATATTCTGT
1 -AATGCCTTTGTGGCGTATTCTGA
* *
35845072 AATGACTTTTGTGGCATATTCTG-
1 AATG-CCTTTGTGGCGTATTCTGA
* *
35845095 AA----TTTGTGGCATAGTCT-A
1 AATGCCTTTGTGGCGTATTCTGA
* *
35845113 TAATGCCTTTGTGGTGTATT-TTA
1 -AATGCCTTTGTGGCGTATTCTGA
35845136 CAATGCCTTTGTGG
1 -AATGCCTTTGTGG
35845150 TAAGTTCTAT
Statistics
Matches: 120, Mismatches: 17, Indels: 20
0.76 0.11 0.13
Matches are distributed among these distances:
18 14 0.12
19 2 0.02
22 2 0.02
23 85 0.71
24 17 0.14
ACGTcount: A:0.19, C:0.15, G:0.24, T:0.41
Consensus pattern (23 bp):
AATGCCTTTGTGGCGTATTCTGA
Found at i:35845033 original size:46 final size:45
Alignment explanation
Indices: 35844977--35845148 Score: 151
Period size: 46 Copynumber: 3.8 Consensus size: 45
35844967 GCAAGTTACT
*
35844977 TGTAATGCCTTTGTGGCGTATCCTGAAATGCCTTTGTGGCGA-ATTC
1 TGTAATGCCTTTGTGGCGTAT-CTGAAATGCCTTTGTGAC-ATATTC
35845023 TGTAATGCCTTTGTGGCGTAT-TGGATAATGCCTTTGTGACATATTC
1 TGTAATGCCTTTGTGGCGTATCT-GA-AATGCCTTTGTGACATATTC
* * * *
35845069 TGTAATGACTTTTGTGGCATATTCTG-AA----TTTGTGGCATAGTC
1 TGTAATG-CCTTTGTGGCGTA-TCTGAAATGCCTTTGTGACATATTC
* * * *
35845111 TATAATGCCTTTGTGGTGTATTTTACAATGCCTTTGTG
1 TGTAATGCCTTTGTGGCGTATCTGA-AATGCCTTTGTG
35845149 GTAAGTTCTA
Statistics
Matches: 103, Mismatches: 11, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
40 2 0.02
41 10 0.10
42 20 0.19
44 1 0.01
45 3 0.03
46 53 0.51
47 11 0.11
48 2 0.02
49 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.24, T:0.42
Consensus pattern (45 bp):
TGTAATGCCTTTGTGGCGTATCTGAAATGCCTTTGTGACATATTC
Found at i:35849692 original size:91 final size:91
Alignment explanation
Indices: 35849530--35849718 Score: 254
Period size: 91 Copynumber: 2.1 Consensus size: 91
35849520 GTAACCATTT
* * * *
35849530 GATAACACACCAGATGCACATAGTGTAAAGCCCATAGGCTAAGTATTCTCCCCCGGTAACACAAC
1 GATAACACACCACATGCACATAGTGCAAAGCCCATAGGCTAAATATTCTCCCCCGATAACACAAC
*
35849595 AATTTTCTCATAAGAGCTTTCCAA-C
66 AATTTTCTCATAAGAACTTTCCAATC
* ***
35849620 AGATAACACACCACATGCACATAGTGCAAAGCCCATAGGCTAAATATTCTCCCCTGATAACATGC
1 -GATAACACACCACATGCACATAGTGCAAAGCCCATAGGCTAAATATTCTCCCCCGATAACACAA
* * *
35849685 CAGTTTTCTCGTAAGAATTTTCCAATC
65 CAATTTTCTCATAAGAACTTTCCAATC
35849712 GATAACA
1 GATAACA
35849719 TGCTAGAATC
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
91 84 0.99
92 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (91 bp):
GATAACACACCACATGCACATAGTGCAAAGCCCATAGGCTAAATATTCTCCCCCGATAACACAAC
AATTTTCTCATAAGAACTTTCCAATC
Found at i:35853012 original size:21 final size:21
Alignment explanation
Indices: 35852988--35853040 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
35852978 TTTAAAACCC
35852988 AATGAGTATCGATACTTTTTA
1 AATGAGTATCGATACTTTTTA
*
35853009 AATGAGTATCGATATTTTTTA
1 AATGAGTATCGATACTTTTTA
*
35853030 AA-AAGTATCGA
1 AATGAGTATCGA
35853041 AAAACAATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 8 0.27
21 22 0.73
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.40
Consensus pattern (21 bp):
AATGAGTATCGATACTTTTTA
Found at i:35856473 original size:20 final size:21
Alignment explanation
Indices: 35856428--35856479 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
35856418 TACACCACAT
*
35856428 CAGAGGCATCAAAAATGCATAA
1 CAGAGGCA-CCAAAATGCATAA
*
35856450 CAGAGGCACCAAAGTGCA-AA
1 CAGAGGCACCAAAATGCATAA
35856470 CAGAGGCACC
1 CAGAGGCACC
35856480 GAATTACAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 12 0.43
21 8 0.29
22 8 0.29
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.08
Consensus pattern (21 bp):
CAGAGGCACCAAAATGCATAA
Found at i:35863266 original size:28 final size:28
Alignment explanation
Indices: 35863226--35863303 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
35863216 CACTTACTTA
35863226 AAAGATAGTCCATGCAGACTCTTG-TTGG
1 AAAGATAGTCCATGCAGACTCTTGCTT-G
**
35863254 AAAGATAGTCCATGTGGACTCTTGCTTG
1 AAAGATAGTCCATGCAGACTCTTGCTTG
*
35863282 AAAGAGAGTCCATGCAGACTCT
1 AAAGATAGTCCATGCAGACTCT
35863304 CATATGGTGG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 42 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (28 bp):
AAAGATAGTCCATGCAGACTCTTGCTTG
Found at i:35865375 original size:27 final size:27
Alignment explanation
Indices: 35865345--35865590 Score: 144
Period size: 27 Copynumber: 9.1 Consensus size: 27
35865335 AAACCAACAG
* *
35865345 AGTCTACTAGGACAGTAAACACAGGGT
1 AGTCCACTGGGACAGTAAACACAGGGT
* * *
35865372 AGTCCATTGGGATAGTAAACACGGGGT
1 AGTCCACTGGGACAGTAAACACAGGGT
* * * * **
35865399 AATCC-GTCAGGACAATAAACATGGGGT
1 AGTCCACT-GGGACAGTAAACACAGGGT
* * * * * *
35865426 AGTCTACCGAGATAATAAACACGGGGT
1 AGTCCACTGGGACAGTAAACACAGGGT
* * * * *
35865453 AATCCACCGAGACATTAAAGAC-GAGGT
1 AGTCCACTGGGACAGTAAACACAG-GGT
**
35865480 AGT-CTGTCGGGACAGTAAACACAGGGT
1 AGTCCACT-GGGACAGTAAACACAGGGT
*
35865507 AGTCCACTAGGACA-TGAAACACAGGGT
1 AGTCCACTGGGACAGT-AAACACAGGGT
*
35865534 AGTCCA-TCGGGACATTAAACACAGGGT
1 AGTCCACT-GGGACAGTAAACACAGGGT
**
35865561 AGTCCACTGGGAC-GTTAAACATGGGGT
1 AGTCCACTGGGACAG-TAAACACAGGGT
35865588 AGT
1 AGT
35865591 TTGCTGGGAC
Statistics
Matches: 170, Mismatches: 38, Indels: 22
0.74 0.17 0.10
Matches are distributed among these distances:
26 5 0.03
27 160 0.94
28 5 0.03
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (27 bp):
AGTCCACTGGGACAGTAAACACAGGGT
Found at i:35865573 original size:81 final size:80
Alignment explanation
Indices: 35865345--35865590 Score: 223
Period size: 81 Copynumber: 3.0 Consensus size: 80
35865335 AAACCAACAG
* * * * *
35865345 AGTCTACTAGGACA-GTAAACACAGGGTAGTCCATTGGGATAGTAAACACGGGGTAATCCGTCAG
1 AGTCTACTAGGACATG-AAACACAGGGTAGTCCATCGGGACATTAAACAC-GGGTAGTCCGTCGG
*
35865409 GACAATAAACATGGGGT
64 GACAGTAAACATGGGGT
* * * * * * * *
35865426 AGTCTAC-CGAGATAAT-AAACACGGGGTAATCCACCGAGACATTAAAGACGAGGTAGTCTGTCG
1 AGTCTACTAG-GA-CATGAAACACAGGGTAGTCCATCGGGACATTAAACACG-GGTAGTCCGTCG
**
35865489 GGACAGTAAACACAGGGT
63 GGACAGTAAACATGGGGT
* *
35865507 AGTCCACTAGGACATGAAACACAGGGTAGTCCATCGGGACATTAAACACAGGGTAGTCC-ACTGG
1 AGTCTACTAGGACATGAAACACAGGGTAGTCCATCGGGACATTAAACAC-GGGTAGTCCGTC-GG
35865571 GAC-GTTAAACATGGGGT
64 GACAG-TAAACATGGGGT
35865588 AGT
1 AGT
35865591 TTGCTGGGAC
Statistics
Matches: 128, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
80 6 0.05
81 119 0.93
82 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (80 bp):
AGTCTACTAGGACATGAAACACAGGGTAGTCCATCGGGACATTAAACACGGGTAGTCCGTCGGGA
CAGTAAACATGGGGT
Found at i:35865581 original size:54 final size:54
Alignment explanation
Indices: 35865350--35865590 Score: 200
Period size: 54 Copynumber: 4.5 Consensus size: 54
35865340 AACAGAGTCT
* * * *
35865350 ACTAGGACAGTAAACACAGGGTAGTCCATTGGGATAGTAAACACGGGGTAATCC
1 ACTAGGACATTAAACACAGGGTAGTCCATCGGGACAGTAAACACAGGGTAATCC
* * ** * * * * * *
35865404 -GTCAGGACAATAAACATGGGGTAGTCTACCGAGATAATAAACACGGGGTAATCC
1 ACT-AGGACATTAAACACAGGGTAGTCCATCGGGACAGTAAACACAGGGTAATCC
* * ** *
35865458 AC-CGAGACATTAAAGAC-GAGGTAGTCTGTCGGGACAGTAAACACAGGGTAGTCC
1 ACTAG-GACATTAAACACAG-GGTAGTCCATCGGGACAGTAAACACAGGGTAATCC
* * *
35865512 ACTAGGACATGAAACACAGGGTAGTCCATCGGGACATTAAACACAGGGTAGTCC
1 ACTAGGACATTAAACACAGGGTAGTCCATCGGGACAGTAAACACAGGGTAATCC
* * **
35865566 ACTGGGACGTTAAACATGGGGTAGT
1 ACTAGGACATTAAACACAGGGTAGT
35865591 TTGCTGGGAC
Statistics
Matches: 149, Mismatches: 32, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
53 3 0.02
54 144 0.97
55 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.18
Consensus pattern (54 bp):
ACTAGGACATTAAACACAGGGTAGTCCATCGGGACAGTAAACACAGGGTAATCC
Found at i:35871720 original size:46 final size:46
Alignment explanation
Indices: 35871669--35871764 Score: 183
Period size: 46 Copynumber: 2.1 Consensus size: 46
35871659 AAGGACCTTA
*
35871669 AAATGTTCTAAAAATGTATGTATGAATCATATTGCACGAAACGGGT
1 AAATGTTCTAAAAATGTATATATGAATCATATTGCACGAAACGGGT
35871715 AAATGTTCTAAAAATGTATATATGAATCATATTGCACGAAACGGGT
1 AAATGTTCTAAAAATGTATATATGAATCATATTGCACGAAACGGGT
35871761 AAAT
1 AAAT
35871765 TTAAACCTAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.30
Consensus pattern (46 bp):
AAATGTTCTAAAAATGTATATATGAATCATATTGCACGAAACGGGT
Found at i:35877387 original size:24 final size:24
Alignment explanation
Indices: 35877360--35877411 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
35877350 TTAGTAAGTC
*
35877360 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
35877384 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
35877408 AAAT
1 AAAT
35877412 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:35879356 original size:24 final size:24
Alignment explanation
Indices: 35879329--35879380 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
35879319 TTAGTAAGTC
*
35879329 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
35879353 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
35879377 AAAT
1 AAAT
35879381 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:35901975 original size:42 final size:42
Alignment explanation
Indices: 35901928--35902024 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
35901918 AGGTCGTGTG
35901928 GCCAGGCTGTGTAAC-ATTTGAACAAGCCACACACGGCCGTAT
1 GCCAGGCTGTGTAACTATTTG-ACAAGCCACACACGGCCGTAT
* *** * *
35901970 GCCAGGCTGTGTAACTCTTTGAGTTGCCACACACGGTCGTGT
1 GCCAGGCTGTGTAACTATTTGACAAGCCACACACGGCCGTAT
*
35902012 GCCAGGCCGTGTA
1 GCCAGGCTGTGTA
35902025 CTAAGTCATG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 43 0.91
43 4 0.09
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (42 bp):
GCCAGGCTGTGTAACTATTTGACAAGCCACACACGGCCGTAT
Found at i:35902160 original size:116 final size:116
Alignment explanation
Indices: 35901956--35902213 Score: 372
Period size: 116 Copynumber: 2.2 Consensus size: 116
35901946 TGAACAAGCC
* * * * * * *
35901956 ACACACGGCCGTATGCCAGGCTGTGTAACTCTTTGAGTTGCCACACACGGTCGTGTGCCAGGCCG
1 ACACACGGCCGTGTGCCAGGCTGTGTAACTCTCTAAGTTGCCACAAACGGTCATGAGCCAGGCCA
* *
35902021 TGTACTAAGTCATGAAACACACTGGCTTGAAATATCAAAATTTTGCAAATG
66 TGTACTAAGCCATGAAACACACTGACTTGAAATATCAAAATTTTGCAAATG
*
35902072 ACACATGGCCGTGTGCCAGGCTGTGTAACTCTCTAAGTTGCCACAAACGGTCATGAGCCAGGCCA
1 ACACACGGCCGTGTGCCAGGCTGTGTAACTCTCTAAGTTGCCACAAACGGTCATGAGCCAGGCCA
* * *
35902137 TGTACTAAGCCGTGAAACACACTGACTTGAAATATTAAAATTTTTCAAATG
66 TGTACTAAGCCATGAAACACACTGACTTGAAATATCAAAATTTTGCAAATG
* * *
35902188 ACACACGACCGTGTGACAGCCTGTGT
1 ACACACGGCCGTGTGCCAGGCTGTGT
35902214 CCCAGGCCAT
Statistics
Matches: 125, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
116 125 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (116 bp):
ACACACGGCCGTGTGCCAGGCTGTGTAACTCTCTAAGTTGCCACAAACGGTCATGAGCCAGGCCA
TGTACTAAGCCATGAAACACACTGACTTGAAATATCAAAATTTTGCAAATG
Found at i:35904176 original size:20 final size:20
Alignment explanation
Indices: 35904139--35904177 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
35904129 TCATCTTTTC
*
35904139 TTACTTAATTTTCTTTTTAG
1 TTACTTAATTTTCATTTTAG
35904159 TTAC-TAATTTATCATTTTA
1 TTACTTAATTT-TCATTTTA
35904178 CCCTTATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.26, C:0.10, G:0.03, T:0.62
Consensus pattern (20 bp):
TTACTTAATTTTCATTTTAG
Found at i:35909808 original size:27 final size:27
Alignment explanation
Indices: 35909791--35909997 Score: 207
Period size: 27 Copynumber: 7.6 Consensus size: 27
35909781 ATATTAAGTC
35909791 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
35909818 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
35909846 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
35909873 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
35909901 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
35909928 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * * *
35909956 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
35909983 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
35909998 GCACAATTTA
Statistics
Matches: 171, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
27 92 0.54
28 79 0.46
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:35909875 original size:55 final size:55
Alignment explanation
Indices: 35909791--35909997 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
35909781 ATATTAAGTC
* * * *
35909791 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
35909846 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
35909901 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
35909956 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
35909998 GCACAATTTA
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:35910606 original size:150 final size:150
Alignment explanation
Indices: 35910425--35910725 Score: 575
Period size: 150 Copynumber: 2.0 Consensus size: 150
35910415 AACTACCATA
35910425 TCATCAAAAATCTAATCACACATGCACATGCATTAGGTAAGTTACCTTTACTAATTTTAAACCCA
1 TCATCAAAAATCTAATCACACATGCACATGCATTAGGTAAGTTACCTTTACTAATTTTAAACCCA
*
35910490 ACATCACACAAGCTCTCAAGTGATGGCCGAATGCTTCTTTTGTTACCCAACTAATCATTCGACAA
66 ACATCACACAAGCTCTCAAGTGATGGCCGAATGCTTCTTTTATTACCCAACTAATCATTCGACAA
35910555 TTTCATCCCCTTTACCACCC
131 TTTCATCCCCTTTACCACCC
*
35910575 TCATCAAAAATCTAATCAGACATGCACATGCATTAGGTAAGTTACCTTTACTAATTTTAAACCCA
1 TCATCAAAAATCTAATCACACATGCACATGCATTAGGTAAGTTACCTTTACTAATTTTAAACCCA
*
35910640 ACATCACACAAGCTCTCAAGTGATGGTCGAATGCTTCTTTTATTACCCAACTAATCATTCGACAA
66 ACATCACACAAGCTCTCAAGTGATGGCCGAATGCTTCTTTTATTACCCAACTAATCATTCGACAA
35910705 TTTCATCCCCTTTACCACCC
131 TTTCATCCCCTTTACCACCC
35910725 T
1 T
35910726 TTTATGCCTA
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
150 148 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (150 bp):
TCATCAAAAATCTAATCACACATGCACATGCATTAGGTAAGTTACCTTTACTAATTTTAAACCCA
ACATCACACAAGCTCTCAAGTGATGGCCGAATGCTTCTTTTATTACCCAACTAATCATTCGACAA
TTTCATCCCCTTTACCACCC
Found at i:35922652 original size:10 final size:10
Alignment explanation
Indices: 35922637--35922668 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
35922627 AGTGAAAAAG
35922637 AAAAGTGAGA
1 AAAAGTGAGA
35922647 AAAAGTGAGA
1 AAAAGTGAGA
35922657 AAAAGTGAGA
1 AAAAGTGAGA
35922667 AA
1 AA
35922669 TTCTAGTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.28, T:0.09
Consensus pattern (10 bp):
AAAAGTGAGA
Found at i:35922821 original size:51 final size:51
Alignment explanation
Indices: 35922766--35922969 Score: 207
Period size: 51 Copynumber: 4.0 Consensus size: 51
35922756 ATGTGAAAGT
* *
35922766 GAAAGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
1 GAAAGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
* * * **
35922817 GAAA--GATAGGTCGCATGTGTAGTACTATGTGCAGGCTATTATGCATACCG
1 GAAAGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
* * * * * *
35922867 GATAGCT-TTGATCACGTGTGTAGTGCTATGTGCAGGCTACTACGTGTATCG
1 GAAAG-TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
* * * * *
35922918 GATAGTGATGGTCACATGTGTAGTAATATGTGTAGGCTACTATGTGAACCG
1 GAAAGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
35922969 G
1 G
35922970 TATCATTAAT
Statistics
Matches: 121, Mismatches: 27, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
49 3 0.02
50 39 0.32
51 78 0.64
52 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (51 bp):
GAAAGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
Found at i:35922914 original size:101 final size:102
Alignment explanation
Indices: 35922777--35922961 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 102
35922767 AAAGTGATGG
*
35922777 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAA--GATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGTGAT-GGTCACATGTGTAGT
* *
35922840 ACTATGTGCAGGCTATTATGCATACCGGATAGCTTTGA
65 AATATGTGCAGGCTACTATGCATACCGGATAGCTTTGA
* * * *
35922878 TCACGTGTGTAGTGCTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGTGATGGTCACATGTGTAGTA
*
35922943 ATATGTGTAGGCTACTATG
66 ATATGTGCAGGCTACTATG
35922962 TGAACCGGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
101 40 0.54
102 31 0.42
103 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGTGATGGTCACATGTGTAGTA
ATATGTGCAGGCTACTATGCATACCGGATAGCTTTGA
Found at i:35923037 original size:46 final size:44
Alignment explanation
Indices: 35922965--35923063 Score: 112
Period size: 46 Copynumber: 2.2 Consensus size: 44
35922955 TACTATGTGA
*
35922965 ACCGG-TATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGATATCATTAATTAAAAGGTGGTTGCTATGTGCTGAAT-CC
* * *
35923008 ACCGGATATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGAATCC
1 ACCGGATATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCC
*
35923054 ACCGTATATC
1 ACCGGATATC
35923064 TGTTATTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
43 5 0.11
44 11 0.23
45 2 0.04
46 27 0.57
47 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (44 bp):
ACCGGATATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:35926636 original size:32 final size:32
Alignment explanation
Indices: 35926595--35926661 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
35926585 TCCCATTCAA
*
35926595 TGAAACTAGAAGGGACAACAATATAGGGGGTT
1 TGAAACTAGAAGGGACAAAAATATAGGGGGTT
35926627 TGAAACTAGAAGGGACAAAAATATAGGGGGTT
1 TGAAACTAGAAGGGACAAAAATATAGGGGGTT
35926659 TGA
1 TGA
35926662 CCAAATTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.42, C:0.07, G:0.31, T:0.19
Consensus pattern (32 bp):
TGAAACTAGAAGGGACAAAAATATAGGGGGTT
Found at i:35931481 original size:26 final size:26
Alignment explanation
Indices: 35931438--35931510 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
35931428 TCTCATTCCT
* * *
35931438 ATTTTACCTCTAGAAAAATTTTGACA
1 ATTTTACCCCTGGTAAAATTTTGACA
* * *
35931464 ATTTTACCCCTGTTAAAATTTTGGCG
1 ATTTTACCCCTGGTAAAATTTTGACA
* *
35931490 ATTTTGCCCTTGGTAAAATTT
1 ATTTTACCCCTGGTAAAATTT
35931511 CGAGAAAATA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTGGTAAAATTTTGACA
Found at i:35935411 original size:25 final size:25
Alignment explanation
Indices: 35935354--35935401 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
35935344 TAGGCCCATT
*
35935354 TCACAGCTCATGTGAGCATTTACAA
1 TCACAGCTCATGAGAGCATTTACAA
*
35935379 TCACAGCTCGTGAGAGCATTTAC
1 TCACAGCTCATGAGAGCATTTAC
35935402 TGTCATAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
TCACAGCTCATGAGAGCATTTACAA
Found at i:35935498 original size:27 final size:27
Alignment explanation
Indices: 35935468--35935525 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
35935458 CATCGGGTGA
35935468 GAAATGAGTAAATGGAAAT-GGATATAT
1 GAAATGAGTAAATGGAAATAGG-TATAT
** *
35935495 GAAATGTTTATATGGAAATAGGTATAT
1 GAAATGAGTAAATGGAAATAGGTATAT
35935522 GAAA
1 GAAA
35935526 AGGTTAGATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (27 bp):
GAAATGAGTAAATGGAAATAGGTATAT
Found at i:35951521 original size:21 final size:20
Alignment explanation
Indices: 35951481--35951545 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 20
35951471 CAATTCAATT
35951481 TTTCAATCC-AAT-ATA-CA
1 TTTCAATCCAAATAATATCA
35951498 TTTCAATACCACAATAAT-TCA
1 TTTCAAT-CCA-AATAATATCA
*
35951519 TTT-AATTCAAATAATATCA
1 TTTCAATCCAAATAATATCA
35951538 TTTGCAAT
1 TTT-CAAT
35951546 TTCCGTTTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
17 7 0.18
18 8 0.21
19 8 0.21
20 6 0.15
21 10 0.26
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.38
Consensus pattern (20 bp):
TTTCAATCCAAATAATATCA
Found at i:35952938 original size:45 final size:45
Alignment explanation
Indices: 35952883--35952974 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
35952873 CAGATACTCA
* *
35952883 GTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCG
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCG
*
35952928 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTTCG
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCG
35952973 GT
1 GT
35952975 TCACATATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCG
Found at i:35953045 original size:51 final size:50
Alignment explanation
Indices: 35952983--35953166 Score: 158
Period size: 51 Copynumber: 3.6 Consensus size: 50
35952973 GTTCACATAT
*
35952983 TAGCCTGCACATAGTACTACACATGTGACCATTACGATCCGATACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCATTAC-ATCCGATACACGTAG
* * * * * * * *
35953034 TAGCCTACACATAGTACTACATACGTGATCGA-AACTATGC-AGTACGCATAC
1 TAGCCTGCACATAGTACTACACACGTGA-CCATTAC-ATCCGA-TACACGTAG
*** * * * *
35953085 TAGCCTGCACATAGTACTACACATACGACCTATTA-TTTCGGTAGACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACC-ATTACATCCGATACACGTAG
35953135 TAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGCCTGCACATAGTACTACACACGTGACCAT
35953167 CACTTTCACT
Statistics
Matches: 101, Mismatches: 27, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
49 2 0.02
50 36 0.36
51 60 0.59
52 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (50 bp):
TAGCCTGCACATAGTACTACACACGTGACCATTACATCCGATACACGTAG
Found at i:35953161 original size:101 final size:101
Alignment explanation
Indices: 35952978--35953162 Score: 264
Period size: 101 Copynumber: 1.8 Consensus size: 101
35952968 GTTCGGTTCA
* **
35952978 CATATTAGCCTGCACATAGTACTACACATGTGACCATTACGATCCGATACACGTAGTAGCCTACA
1 CATACTAGCCTGCACATAGTACTACACATACGACCATTAC-ATCCGATACACGTAGTAGCCTACA
*
35953043 CATAGTACTACATACGTGATCGAAACTATGCAGTACG
65 CATAGTACTACACACGTGATCGAAACTATGCAGTACG
* * * * *
35953080 CATACTAGCCTGCACATAGTACTACACATACGACCTATTA-TTTCGGTAGACGTAGTAGCCTGCA
1 CATACTAGCCTGCACATAGTACTACACATACGACC-ATTACATCCGATACACGTAGTAGCCTACA
35953144 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
35953163 CCATCACTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
101 37 0.51
102 32 0.44
103 4 0.05
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
CATACTAGCCTGCACATAGTACTACACATACGACCATTACATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAACTATGCAGTACG
Found at i:35960820 original size:10 final size:10
Alignment explanation
Indices: 35960762--35960824 Score: 65
Period size: 10 Copynumber: 6.1 Consensus size: 10
35960752 CCCTTTTATA
35960762 TTTTTT-AAT
1 TTTTTTAAAT
*
35960771 TTTTTTGAAT
1 TTTTTTAAAT
35960781 TTTTTTAAAT
1 TTTTTTAAAT
**
35960791 TTTTTTATTTT
1 TTTTTTA-AAT
35960802 TCCTTTTTAAAT
1 T--TTTTTAAAT
35960814 TTTTTTAAAT
1 TTTTTTAAAT
35960824 T
1 T
35960825 ACATGAAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
9 6 0.13
10 29 0.64
11 2 0.04
12 2 0.04
13 6 0.13
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (10 bp):
TTTTTTAAAT
Found at i:35964365 original size:45 final size:45
Alignment explanation
Indices: 35964316--35964489 Score: 197
Period size: 45 Copynumber: 3.9 Consensus size: 45
35964306 TACCATAAAC
* * * *
35964316 GAGTAATACCATAGTTGAAAGACGTTATGGCATCACGATTTTATT
1 GAGTAAGACCATAGCTAAAAGACGTTATGGCATCACGATTTTATA
* *
35964361 GAGTAAGACCATAGCTAAAAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATAGCTAAAAGACGTTATGGCATCACGATTTTATA
* * * *
35964406 GAGTAAGACCATAGCTAAAAGATGATATGGCATCACGA-ATTAAA
1 GAGTAAGACCATAGCTAAAAGACGTTATGGCATCACGATTTTATA
* * ** *
35964450 GAAGTAAGACCATAGTTGAAAGACACTATGGCAACACGAT
1 G-AGTAAGACCATAGCTAAAAGACGTTATGGCATCACGAT
35964490 GGAAAATGAA
Statistics
Matches: 110, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
44 3 0.03
45 107 0.97
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (45 bp):
GAGTAAGACCATAGCTAAAAGACGTTATGGCATCACGATTTTATA
Found at i:35964427 original size:90 final size:90
Alignment explanation
Indices: 35964315--35964489 Score: 217
Period size: 90 Copynumber: 1.9 Consensus size: 90
35964305 ATACCATAAA
* * * * * **
35964315 CGAGTAATACCATAGTTGAAAGACGTTATGGCATCACGATTTTATTG-AGTAAGACCATAGCTAA
1 CGAGTAAGACCATAGCTAAAAGACGATATGGCATCACGA-ATTAAAGAAGTAAGACCATAGCTAA
** *
35964379 AAGACGTTATGGCATCACGATTCTAT
65 AAGACACTATGGCAACACGATTCTAT
* * *
35964405 CGAGTAAGACCATAGCTAAAAGATGATATGGCATCACGAATTAAAGAAGTAAGACCATAGTTGAA
1 CGAGTAAGACCATAGCTAAAAGACGATATGGCATCACGAATTAAAGAAGTAAGACCATAGCTAAA
35964470 AGACACTATGGCAACACGAT
66 AGACACTATGGCAACACGAT
35964490 GGAAAATGAA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
89 4 0.06
90 67 0.94
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.24
Consensus pattern (90 bp):
CGAGTAAGACCATAGCTAAAAGACGATATGGCATCACGAATTAAAGAAGTAAGACCATAGCTAAA
AGACACTATGGCAACACGATTCTAT
Found at i:35968203 original size:23 final size:22
Alignment explanation
Indices: 35968155--35968203 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
35968145 AGGTTGTTGC
* * * *
35968155 TTTTTTTTTCTTTTTTTTCGTC
1 TTTTATTTTATTTTTTTTCCTA
35968177 TTTTATTTTATTTTCTTTTCCTA
1 TTTTATTTTATTTT-TTTTCCTA
35968200 TTTT
1 TTTT
35968204 CAAAACAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTTATTTTATTTTTTTTCCTA
Found at i:35968889 original size:12 final size:12
Alignment explanation
Indices: 35968874--35968903 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
35968864 TTAATAAATC
35968874 TATTATGATTAT
1 TATTATGATTAT
35968886 TATTATGATTAT
1 TATTATGATTAT
*
35968898 TTTTAT
1 TATTAT
35968904 TTATTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
TATTATGATTAT
Found at i:35969052 original size:33 final size:31
Alignment explanation
Indices: 35968979--35969055 Score: 82
Period size: 33 Copynumber: 2.4 Consensus size: 31
35968969 TGCATGCGGC
* * *
35968979 ATTTTTTATATTATACGTACATATTTTTATA
1 ATTTTTTATATTATACATACATACTTATATA
* *
35969010 ATTTATTTATTTATATATATACATACTTATATA
1 ATTT-TTTATAT-TATACATACATACTTATATA
35969043 TATTTTTTATATT
1 -ATTTTTTATATT
35969056 TTATAATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
31 4 0.11
32 7 0.19
33 22 0.59
34 4 0.11
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (31 bp):
ATTTTTTATATTATACATACATACTTATATA
Found at i:35969068 original size:29 final size:29
Alignment explanation
Indices: 35969001--35969089 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
35968991 ATACGTACAT
*
35969001 ATTTTTATAATTTATTTATTTATATATATAC
1 ATTTTTAT-ATATATTT-TTTATATATATAC
** *
35969032 ATACTTATATATATTTTTTATATTTTATA-
1 ATTTTTATATATATTTTTTATA-TATATAC
* * *
35969061 ATTTTTATATACATTTTGTATACATATAC
1 ATTTTTATATATATTTTTTATATATATAC
35969090 GTGCATATAC
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
28 4 0.09
29 24 0.52
30 12 0.26
31 6 0.13
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (29 bp):
ATTTTTATATATATTTTTTATATATATAC
Found at i:35969392 original size:4 final size:4
Alignment explanation
Indices: 35969383--35969407 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
35969373 TGTTTTAGTG
35969383 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
35969408 GTTATGGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:35969468 original size:15 final size:15
Alignment explanation
Indices: 35969450--35969480 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
35969440 TTATTATTCT
35969450 TTTTTGTTCATATTA
1 TTTTTGTTCATATTA
35969465 TTTTTGTTCATATTA
1 TTTTTGTTCATATTA
35969480 T
1 T
35969481 CGTATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTTGTTCATATTA
Found at i:35969801 original size:108 final size:108
Alignment explanation
Indices: 35969529--35969862 Score: 415
Period size: 109 Copynumber: 3.1 Consensus size: 108
35969519 TCGAAAAACG
* * * *
35969529 AAAATTTTTCAAAGTAAGGCAATATTTTGTGTTTGGAAATTCGAGAAAACGTTCCCTAATTTGCT
1 AAAA-TTTT-AAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCT
* **
35969594 GGGTTTT-GATTTTTCCCGTTCAACCAAATAGGTAAATATCCTTTT
64 -GGTTTTCGATTTTTCTCGTTCAACCAAATAGCAAAATATCCTTTT
* * * *
35969639 GAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGTAAATTCAAGAAAACGTGCCCTAATGTGCTG
1 -AAAATTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
* *
35969704 GTTTTCGATTTTTCTCGTTCGATCAAATAGCAAAATATCCTTTT
65 GTTTTCGATTTTTCTCGTTCAACCAAATAGCAAAATATCCTTTT
* * * *
35969748 AAAATTTTGAAATAAGACAATATTTTGCGTTTGGAAATTCGAGGAAATGTGCCCTAATGTGCTGG
1 AAAATTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGG
* * * *
35969813 GTTTCGA--TTTCTCGTTTAACCAAATAGCCAAATATCCTCTT
66 TTTTCGATTTTTCTCGTTCAACCAAATAGCAAAATATCCTTTT
35969854 -AAATTTTAA
1 AAAATTTTAA
35969863 TCCATGTCAT
Statistics
Matches: 194, Mismatches: 28, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
105 8 0.04
106 29 0.15
108 69 0.36
109 81 0.42
110 3 0.02
111 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.37
Consensus pattern (108 bp):
AAAATTTTAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGG
TTTTCGATTTTTCTCGTTCAACCAAATAGCAAAATATCCTTTT
Found at i:35973081 original size:10 final size:9
Alignment explanation
Indices: 35973057--35973121 Score: 55
Period size: 9 Copynumber: 7.0 Consensus size: 9
35973047 GTATGGGATG
35973057 CAAAAAAAA
1 CAAAAAAAA
*
35973066 -ATAACAAAA
1 CA-AAAAAAA
35973075 CAAAACAAAA
1 CAAAA-AAAA
35973085 CAAAAAACAA
1 CAAAAAA-AA
35973095 -AAAATAAAA
1 CAAAA-AAAA
35973104 -ATAAAAAAA
1 CA-AAAAAAA
35973113 CAAAAAAAA
1 CAAAAAAAA
35973122 TCTCTGCCGG
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
8 1 0.02
9 28 0.60
10 18 0.38
ACGTcount: A:0.85, C:0.11, G:0.00, T:0.05
Consensus pattern (9 bp):
CAAAAAAAA
Found at i:35974811 original size:46 final size:46
Alignment explanation
Indices: 35974738--35975064 Score: 476
Period size: 46 Copynumber: 7.1 Consensus size: 46
35974728 CCCAGAGAAC
*
35974738 AGATCAAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
*
35974784 AGACCGAAGATAGCAGATCTTGTCTTCC-AGTATTTGGCAGCGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTA-TATTTGGCAGCGGAGT
* * *
35974830 AGATCAAAGATAGCAGATCTTTTCTTCCTGTATTTGGCAGCGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
* * * *
35974876 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTAGCAACGGAGA
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
* * * * * *
35974922 AGATCGAAGATAGAAGATCTTATCTTCCTCTTTTTCGCAACGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
35974968 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
** *
35975014 AGATAAAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
35975060 AGATC
1 AGATC
35975065 TGTATTTACC
Statistics
Matches: 252, Mismatches: 27, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 251 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (46 bp):
AGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGT
Found at i:35974986 original size:138 final size:138
Alignment explanation
Indices: 35974738--35976415 Score: 1170
Period size: 138 Copynumber: 12.1 Consensus size: 138
35974728 CCCAGAGAAC
* * *
35974738 AGATCAAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGTAGACCGAAGATAGCAGATC
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
* * *
35974803 TTGTCTTCCAGTATTTGGCAGCGGAGTAGATCAAAGATAGCAGATCTTTTCTTCCTGTATTTGGC
66 TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
35974868 AGCGGAGT
131 AGCGGAGT
* * * *
35974876 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTAGCAACGGAGAAGATCGAAGATAGAAGATC
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
* * * * * *
35974941 TTATCTTCCTCTTTTTCGCAACGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGC
66 TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
35975006 AGCGGAGT
131 AGCGGAGT
**
35975014 AGATAAAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCTGTATTTACCAGCA
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATC-G-----A--AG-A
* * ** * ** * * ** * * * * * *
35975079 GAGTAGATCGAAG-ATAACAG-ATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAG
57 TAGCAGATC-TTGTCTTCCTGTAT-TTGGC-AGC-GGA-GTAG-ATC-GA--AGATAGCAGAT--
* *
35975142 AAGATCTTGTCTTCCGGTATTTGGCAGCGGAAT
111 -----CTTGTCTTCCTGTATTTGGCAGCGGAGT
* **
35975175 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTCGCAGTAGAGTAGATCGAAGATAGCAGATC
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
* * * * * *
35975240 TTGTCTTTCTGTATTTGGCAGCGAAGTAGATCAAAGATAGCAGCTCTTGTCTTCCTGTATTTCGT
66 TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
35975305 AGCGGAGT
131 AGCGGAGT
* * **** * ** * *
35975313 -GATCGAAGATAGCATAT-TCTGTC-TCC-CTAAGCAGTAATGGAGCAGATCGAAGATGGC-GAA
1 AGATCGAAGATAGCAGATCT-TGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAG-A
* * * * ** ** ** * * * *
35975373 TCTTATCTTCCCAAG-ATAATGG-A--GAAGTAGATTTAAGCCATTAG-TCCTATC-TCC-CTAA
64 TCTTGTCTT-CC-TGTAT-TTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
*** * *
35975431 GCAGTAGTGGAGT
126 TTGGCAGCGGAGT
* * * ** **** * * * * *
35975444 AGGTTGAAGATGGCAGAT-TCTGTC--CCCCTAAGAAGTAGTGGAGAAGATCGAACATGGC-GAA
1 AGATCGAAGATAGCAGATCT-TGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAG-A
* * * * ** ** ** * * *
35975505 TCTTATCTTCCCAAG-ATAGTGG-A--GAAGTAGATTTAAGCCATTAG-TCTTATC-TCC-CTAA
64 TCTTGTCTT-CC-TGTAT-TTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
* * * *
35975563 GTAGTAGTGGAGT
126 TTGGCAGCGGAGT
* * * ** * * * *
35975576 AGGTTGAAGATTGCAGAT-TCTGTCCCCCTAAGTA-AT---AGTGGAGCAGATCGAAGATGGC-G
1 AGATCGAAGATAGCAGATCT-TGTCTTCCT--GTATTTGGCAGCGGAGTAGATCGAAGATAGCAG
* * * * * ** **
35975635 AATCTTATCTTCCCAAG-ATAGTGG-A--GAAGCAGATTTAAGCA-ATTAG-TC-TGATC-TCC-
63 -ATCTTGTCTT-CC-TGTAT-TTGGCAGCGGAGTAGATCGAAG-ATAGCAGATCTTG-TCTTCCT
* ** * * **
35975691 CTAAGTAGTAGTAGAGT
122 GTATTTGGCAGCGGAGT
* *
35975708 AGGTTGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
* * * * * * *
35975773 TTGTCTTCCTGTATTTTGTAGCGGAGTAGATCGACGATAGCGGAACTTGTCTTCCTATATTTTGC
66 TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
*
35975838 AGTGGAGT
131 AGCGGAGT
*
35975846 AGATCGAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
* *
35975911 TTGTCTTCTTGTATTTGGCAGCGGAGTAGATCGAAGATA-CTAGATCTTGTCTTCCTGTATTTGA
66 TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGC-AGATCTTGTCTTCCTGTATTTGG
* *
35975975 CAACAGAGT
130 CAGCGGAGT
* * * * *
35975984 AGATCGAAGAAAGTAGATCTTGTCTTCTTGTATTTGGTAGCGGAGTAGATCGAAGATGGCAGATC
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
*
35976049 TTGTCTTCCTGTATTTGGCAGCGGAATAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
66 TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
**
35976114 AGCAAAGT
131 AGCGGAGT
* * * *
35976122 AGATCGAAGAAAGAAGATCTTGTCTTCTTGTATTTGGCAGCGGAGTAGATCGAAGATAGTAGATC
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
*
35976187 TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGT
66 TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
35976252 AGCGGAGT
131 AGCGGAGT
*
35976260 AGATCGAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
1 AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
* * *
35976325 TTGTCTTCCTGTATTTGGTAGCGGAGTAGATCGAAGATAGGAGATCTTGTCTTCCTGTATTTCGC
66 TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
*
35976390 AGCAGAGT
131 AGCGGAGT
*
35976398 AGATCGAAGCTAGCAGAT
1 AGATCGAAGATAGCAGAT
35976416 TCTGTCTCCC
Statistics
Matches: 1288, Mismatches: 195, Indels: 114
0.81 0.12 0.07
Matches are distributed among these distances:
130 3 0.00
131 15 0.01
132 257 0.20
133 11 0.01
134 47 0.04
135 42 0.03
136 13 0.01
137 30 0.02
138 724 0.56
139 2 0.00
144 1 0.00
145 8 0.01
146 3 0.00
147 14 0.01
148 3 0.00
149 4 0.00
150 4 0.00
151 4 0.00
152 17 0.01
153 4 0.00
154 9 0.01
155 1 0.00
160 1 0.00
161 71 0.06
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (138 bp):
AGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATC
TTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
AGCGGAGT
Found at i:35975067 original size:23 final size:23
Alignment explanation
Indices: 35975041--35975087 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
35975031 TCTTGTCTTC
** *
35975041 CTGTATTTGGCAGCGGAGTAGAT
1 CTGTATTTACCAGCAGAGTAGAT
35975064 CTGTATTTACCAGCAGAGTAGAT
1 CTGTATTTACCAGCAGAGTAGAT
35975087 C
1 C
35975088 GAAGATAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (23 bp):
CTGTATTTACCAGCAGAGTAGAT
Found at i:35975103 original size:161 final size:161
Alignment explanation
Indices: 35974903--35975225 Score: 468
Period size: 161 Copynumber: 2.0 Consensus size: 161
35974893 TCTTGTCTTC
* * *
35974903 CTGTATTTAGCAACGGAGAAGATCGAAGATAGAAGATCTTATCTTCCTCTTTTTCGCAACGGAGT
1 CTGTATTTACCAACAGAGAAGATCGAAGATAGAAGATCTTATCTTCCTCTATTTCGCAACGGAGT
* * *
35974968 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGTAGATAAAAGATAGCAGATC
66 AGATCGAAGATAGAAGATCTTGTCTTCCGATATTTGGCAGCGGAATAGATAAAAGATAGCAGATC
* *
35975033 TTGTCTTCCTGTATTTGGCAGCGGAGTAGAT
131 TTGTCTTCCTGTATTTCGCAGCAGAGTAGAT
* * * * * *
35975064 CTGTATTTACCAGCAGAGTAGATCGAAGATA-ACAGATCTTGTCTTCCTGTATTTGGCAGCGGAG
1 CTGTATTTACCAACAGAGAAGATCGAAGATAGA-AGATCTTATCTTCCTCTATTTCGCAACGGAG
* **
35975128 TAGATCGAAGATAGAAGATCTTGTCTTCCGGTATTTGGCAGCGGAATAGATCGAAGATAGCAGAT
65 TAGATCGAAGATAGAAGATCTTGTCTTCCGATATTTGGCAGCGGAATAGATAAAAGATAGCAGAT
*
35975193 CTTGTCTTCCTGTATTTCGCAGTAGAGTAGAT
130 CTTGTCTTCCTGTATTTCGCAGCAGAGTAGAT
35975225 C
1 C
35975226 GAAGATAGCA
Statistics
Matches: 143, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
160 1 0.01
161 142 0.99
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (161 bp):
CTGTATTTACCAACAGAGAAGATCGAAGATAGAAGATCTTATCTTCCTCTATTTCGCAACGGAGT
AGATCGAAGATAGAAGATCTTGTCTTCCGATATTTGGCAGCGGAATAGATAAAAGATAGCAGATC
TTGTCTTCCTGTATTTCGCAGCAGAGTAGAT
Found at i:35975109 original size:69 final size:69
Alignment explanation
Indices: 35975005--35975133 Score: 222
Period size: 69 Copynumber: 1.9 Consensus size: 69
35974995 CTATATTTGG
* *
35975005 CAGCGGAGTAGATAAAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCTGTAT
1 CAGCAGAGTAGATAAAAGATAACAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCTGTAT
35975070 TTAC
66 TTAC
**
35975074 CAGCAGAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATC
1 CAGCAGAGTAGATAAAAGATAACAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATC
35975134 GAAGATAGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (69 bp):
CAGCAGAGTAGATAAAAGATAACAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCTGTAT
TTAC
Found at i:35975116 original size:46 final size:46
Alignment explanation
Indices: 35975064--35975326 Score: 343
Period size: 46 Copynumber: 5.7 Consensus size: 46
35975054 CGGAGTAGAT
* * *
35975064 CTGTATTTACCAGCAGAGTAGATCGAAGATAACAGATCTTGTCTTC
1 CTGTATTTGCCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTC
* *
35975110 CTGTATTTGGCAGCGGAGTAGATCGAAGATAGAAGATCTTGTCTTC
1 CTGTATTTGCCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTC
* * *
35975156 CGGTATTTGGCAGCGGAATAGATCGAAGATAGCAGATCTTGTCTTC
1 CTGTATTTGCCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTC
** *
35975202 CTGTATTT-CGCAGTAGAGTAGATCGAAGATAGCAGATCTTGTCTTT
1 CTGTATTTGC-CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTC
* * * *
35975248 CTGTATTTGGCAGCGAAGTAGATCAAAGATAGCAGCTCTTGTCTTC
1 CTGTATTTGCCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTC
*
35975294 CTGTATTT-CGTAGCGGAGT-GATCGAAGATAGCA
1 CTGTATTTGC-CAGCGGAGTAGATCGAAGATAGCA
35975327 TATTCTGTCT
Statistics
Matches: 189, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
45 13 0.07
46 176 0.93
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (46 bp):
CTGTATTTGCCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTC
Found at i:35975166 original size:115 final size:115
Alignment explanation
Indices: 35974964--35975179 Score: 369
Period size: 115 Copynumber: 1.9 Consensus size: 115
35974954 TTTCGCAACG
* *
35974964 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGTAGATAAAAGATAGCA
1 GAGTAGATCGAAGATAACAGATCTTGTCTTCCTATATTTGGCAGCGGAGTAGATAAAAGATAGAA
* *
35975029 GATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCTGTATTTACCAGCA
66 GATCTTGTCTTCCGGTATTTGGCAGCGGAATAGATCTGTATTTACCAGCA
* **
35975079 GAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGAA
1 GAGTAGATCGAAGATAACAGATCTTGTCTTCCTATATTTGGCAGCGGAGTAGATAAAAGATAGAA
35975144 GATCTTGTCTTCCGGTATTTGGCAGCGGAATAGATC
66 GATCTTGTCTTCCGGTATTTGGCAGCGGAATAGATC
35975180 GAAGATAGCA
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
115 94 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (115 bp):
GAGTAGATCGAAGATAACAGATCTTGTCTTCCTATATTTGGCAGCGGAGTAGATAAAAGATAGAA
GATCTTGTCTTCCGGTATTTGGCAGCGGAATAGATCTGTATTTACCAGCA
Found at i:35975223 original size:207 final size:207
Alignment explanation
Indices: 35974857--35975271 Score: 632
Period size: 207 Copynumber: 2.0 Consensus size: 207
35974847 TCTTTTCTTC
** * *
35974857 CTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTAGCAACGGAGA
1 CTGTATTTACCAGCAGAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTTAGCAACGGAGA
* * *
35974922 AGATCGAAGATAGAAGATCTTATCTTCCTCTTTTTCGCAACGGAGTAGATCGAAGATAGCAGATC
66 AGATCGAAGATAGAAGATCTTATCTTCCGCTATTTCGCAACGGAATAGATCGAAGATAGCAGATC
* *
35974987 TTGTCTTCCTATATTTGGCAGCGGAGTAGATAAAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
131 TTGTCTTCCTATATTTCGCAGCAGAGTAGATAAAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
*
35975052 AGCGGAGTAGAT
196 AGCGAAGTAGAT
* * *
35975064 CTGTATTTACCAGCAGAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTTGGCAGCGGAGT
1 CTGTATTTACCAGCAGAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTTAGCAACGGAGA
* * * *
35975129 AGATCGAAGATAGAAGATCTTGTCTTCCGGTATTTGGCAGCGGAATAGATCGAAGATAGCAGATC
66 AGATCGAAGATAGAAGATCTTATCTTCCGCTATTTCGCAACGGAATAGATCGAAGATAGCAGATC
* * ** *
35975194 TTGTCTTCCTGTATTTCGCAGTAGAGTAGATCGAAGATAGCAGATCTTGTCTTTCTGTATTTGGC
131 TTGTCTTCCTATATTTCGCAGCAGAGTAGATAAAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
35975259 AGCGAAGTAGAT
196 AGCGAAGTAGAT
35975271 C
1 C
35975272 AAAGATAGCA
Statistics
Matches: 186, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
207 186 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (207 bp):
CTGTATTTACCAGCAGAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTTAGCAACGGAGA
AGATCGAAGATAGAAGATCTTATCTTCCGCTATTTCGCAACGGAATAGATCGAAGATAGCAGATC
TTGTCTTCCTATATTTCGCAGCAGAGTAGATAAAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
AGCGAAGTAGAT
Found at i:35975467 original size:132 final size:132
Alignment explanation
Indices: 35975317--35975725 Score: 660
Period size: 132 Copynumber: 3.1 Consensus size: 132
35975307 CGGAGTGATC
* * * *
35975317 GAAGATAGCATATTCTGTCTCCCTAAGCAGTAATGGAGCAGATCGAAGATGGCGAATCTTATCTT
1 GAAGATAGCAGATTCTGTCCCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTT
* *
35975382 CCCAAGATAATGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGG
66 CCCAAGATAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTAGTGGAGTAGG
35975447 TT
131 TT
* * *
35975449 GAAGATGGCAGATTCTGTCCCCCTAAGAAGTAGTGGAGAAGATCGAACATGGCGAATCTTATCTT
1 GAAGATAGCAGATTCTGTCCCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTT
*
35975514 CCCAAGATAGTGGAGAAGTAGATTTAAGCCATTAGTCTTATCTCCCTAAGTAGTAGTGGAGTAGG
66 CCCAAGATAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTAGTGGAGTAGG
35975579 TT
131 TT
*
35975581 GAAGATTGCAGATTCTGTCCCCCTAAGTAA-TAGTGGAGCAGATCGAAGATGGCGAATCTTATCT
1 GAAGATAGCAGATTCTGTCCCCCTAAG-AAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCT
* * *
35975645 TCCCAAGATAGTGGAGAAGCAGATTTAAGCAATTAGT-CTGATCTCCCTAAGTAGTAGTAGAGTA
65 TCCCAAGATAGTGGAGAAGTAGATTTAAGCCATTAGTCCT-ATCTCCCTAAGTAGTAGTGGAGTA
35975709 GGTT
129 GGTT
35975713 GAAGATAGCAGAT
1 GAAGATAGCAGAT
35975726 CTTGTCTTCC
Statistics
Matches: 257, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
131 1 0.00
132 254 0.99
133 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (132 bp):
GAAGATAGCAGATTCTGTCCCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTT
CCCAAGATAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTAGTGGAGTAGG
TT
Found at i:35975608 original size:44 final size:45
Alignment explanation
Indices: 35975420--35975643 Score: 142
Period size: 44 Copynumber: 5.1 Consensus size: 45
35975410 CCATTAGTCC
* * *
35975420 TATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATGGCAGATTC-
1 TATCCCCCTAAGTAGTAGTGGAGTAGATTGAAGATGGCAGATTCT
* * * * * *
35975464 TGTCCCCCTAAGAAGTAGTGGAGAAGATCGAACATGGC-GAATCT
1 TATCCCCCTAAGTAGTAGTGGAGTAGATTGAAGATGGCAGATTCT
* * * * * *
35975508 TATCTTCCC-AAGATAGTGGAGAAGTAGATTTAAGCCAT--TAG--TCT
1 TATC-CCCCTAAG-TAGTAGTGGAGTAGATTGAAG--ATGGCAGATTCT
* * *
35975552 TATCTCCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTC-
1 TATCCCCCTAAGTAGTAGTGGAGTAGATTGAAGATGGCAGATTCT
* * * * *
35975596 TGTCCCCCTAAGTAATAGTGGAGCAGATCGAAGATGGC-GAATCT
1 TATCCCCCTAAGTAGTAGTGGAGTAGATTGAAGATGGCAGATTCT
35975640 TATC
1 TATC
35975644 TTCCCAAGAT
Statistics
Matches: 134, Mismatches: 34, Indels: 24
0.70 0.18 0.12
Matches are distributed among these distances:
41 2 0.01
43 30 0.22
44 81 0.60
45 18 0.13
46 1 0.01
47 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (45 bp):
TATCCCCCTAAGTAGTAGTGGAGTAGATTGAAGATGGCAGATTCT
Found at i:35976422 original size:46 final size:46
Alignment explanation
Indices: 35975704--35976415 Score: 1102
Period size: 46 Copynumber: 15.5 Consensus size: 46
35975694 AGTAGTAGTA
* *
35975704 GAGTAGGTTGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* *
35975750 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTTGTAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* * * * * *
35975796 GAGTAGATCGACGATAGCGGAACTTGTCTTCCTATATTTTGCAGTG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
35975842 GAGTAGATCGAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
35975888 GAGTAGATCGAAGATAGCAGATCTTGTCTTCTTGTATTTGGCAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* * *
35975934 GAGTAGATCGAAGATA-CTAGATCTTGTCTTCCTGTATTTGACAACA
1 GAGTAGATCGAAGATAGC-AGATCTTGTCTTCCTGTATTTGGCAGCG
* * * *
35975980 GAGTAGATCGAAGAAAGTAGATCTTGTCTTCTTGTATTTGGTAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
35976026 GAGTAGATCGAAGATGGCAGATCTTGTCTTCCTGTATTTGGCAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* *
35976072 GAATAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCA
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* * * *
35976118 AAGTAGATCGAAGAAAGAAGATCTTGTCTTCTTGTATTTGGCAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
35976164 GAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
35976210 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGTAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
35976256 GAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
35976302 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGTAGCG
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
* * *
35976348 GAGTAGATCGAAGATAGGAGATCTTGTCTTCCTGTATTTCGCAGCA
1 GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
*
35976394 GAGTAGATCGAAGCTAGCAGAT
1 GAGTAGATCGAAGATAGCAGAT
35976416 TCTGTCTCCC
Statistics
Matches: 604, Mismatches: 60, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.00
46 603 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (46 bp):
GAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG
Found at i:35976560 original size:132 final size:131
Alignment explanation
Indices: 35976410--35977105 Score: 910
Period size: 132 Copynumber: 5.3 Consensus size: 131
35976400 ATCGAAGCTA
* **
35976410 GCAGATTCTGTCTCCCTAAGCAGTAGTGGAGGAGATCGAAGATGGCAAATCTTATCTTCCCAAGA
1 GCAGATTCTG-CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGA
* * * *
35976475 TAATGGAGAAGAAGATTTAAGCCATTAGTCCTATCTCCCTAAGAAGTAGTGGAGTAGGTTGATGA
65 TAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGA
*
35976540 TG
130 TT
* * * *
35976542 GCAGATTCTGCACCCCTAAGCAGTAGTGGAGAAGATCAAAGATGGCGAATCTTATCTTCCCAAGA
1 GCAGATTCTGC-TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGA
* * * *
35976607 TAGTGGAGAAGCAGATTTAAGCCATTAGTCTTATCTCCCTAAGTAGTAGTGGAGTAGATTGAAAA
65 TAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGA
35976672 TT
130 TT
* *
35976674 GCAGATTCTATCCCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCATA-
1 GCAGATTCT-GCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCA-AG
* *
35976738 ATAGTGGAGAAGCAGATTTAAGTCATTAGTCCAATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAG
64 ATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAG
35976803 ATT
129 ATT
* * *
35976806 GCAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCGAGGA
1 GCAGATTCTG-CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGA
* * * * **
35976871 TAGTGAAGAAGCAAATTTAATCCATTAGTCATATCTCCCTAAGCAGTAGTGGAGTAGGTCAAAGA
65 TAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGA
35976936 TT
130 TT
* * * * * * *
35976938 GTAGATTTTGTATCCCTAAGCAATAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTCTCAAGA
1 GCAGATTCTG-CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGA
* * *
35977003 TAGTGGAGAAGCTGATTTAAGCCATTAGTACTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGA
65 TAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGA
35977068 TT
130 TT
* * * * *
35977070 G-TGAATCCTATCTCTCTAAGCAGTAGTAGAGCAGAT
1 GCAG-ATTCT-GCTCCCTAAGCAGTAGTGGAGCAGAT
35977106 AAAAAACAGC
Statistics
Matches: 497, Mismatches: 60, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
131 2 0.00
132 493 0.99
133 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (131 bp):
GCAGATTCTGCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGAT
AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
T
Found at i:35979348 original size:109 final size:109
Alignment explanation
Indices: 35979150--35979471 Score: 470
Period size: 109 Copynumber: 3.0 Consensus size: 109
35979140 AAGGAAAATT
* *
35979150 TTTCAAAGTAAGGCAATATTTTGCGTTTGAAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
35979215 CGATTTTTCTCGTTCAACCGAATAGCTAAATATCCTTTTAAAAA
66 CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTTTAAAAA
* *
35979259 TTTCAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
35979324 CGATTTTTCTCGTTCGATCAAATAGCCAAATATCCTTTT-AAAA
66 CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTTTAAAAA
* * * * * *
35979367 TTTCGAAATAAGACAATATTTTACGTTTAGAAATTCGAGGAAATGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* * *
35979432 CGA--TTTCTTGTTTAACCAAATAGCCAAATATCCTCTTAAA
66 CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTTTAAA
35979472 TTTTAATCCA
Statistics
Matches: 191, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
106 29 0.15
107 2 0.01
108 64 0.34
109 96 0.50
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTTTAAAAA
Found at i:35981153 original size:20 final size:20
Alignment explanation
Indices: 35981128--35981178 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
35981118 TTATGCTAAG
35981128 TAAATGGAATGAAAAGTAAA
1 TAAATGGAATGAAAAGTAAA
* *
35981148 TAAAT-GAAGTGGAAAGTAAG
1 TAAATGGAA-TGAAAAGTAAA
35981168 TAAATGGAATG
1 TAAATGGAATG
35981179 GTTCATCGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 3 0.11
20 21 0.78
21 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.25, T:0.22
Consensus pattern (20 bp):
TAAATGGAATGAAAAGTAAA
Found at i:35985184 original size:6 final size:6
Alignment explanation
Indices: 35985173--35985203 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
35985163 GTGAAATTTA
35985173 TTCTAT TTCTAT TTCTAT TTCTAT TTCTAT T
1 TTCTAT TTCTAT TTCTAT TTCTAT TTCTAT T
35985204 AAGAAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCTAT
Found at i:35987139 original size:175 final size:176
Alignment explanation
Indices: 35986841--35987192 Score: 661
Period size: 175 Copynumber: 2.0 Consensus size: 176
35986831 TATGGGGACC
* *
35986841 AATTGTGTAATTGAACCTAAAATTCTTATTTGAAATGATGATTTAACATGCCACGTCAGTATACC
1 AATTGTATAATTGAACCTAAAATTCTTATTTGAAATGATGATTTAACATGCCACGTCAGCATACC
*
35986906 GTTATACCGTTAATGACAATTAATAGCTCAGTGATTAAAATGTTACAACAAGTTAACATAAGTGT
66 GTTATACCGTTAATGACAATTAACAGCTCAGTGATTAAAATGTTACAACAAGTTAACATAAGTGT
35986971 CTAAAACGTAACATTTCAAACATAAGTGATTAAAATGTAACC-GAA
131 CTAAAACGTAACATTTCAAACATAAGTGATTAAAATGTAACCTGAA
35987016 AATTGTATAATTGAACCTAAAATTCTTATTTGAAATGATGATTTAACATGCCACGTCAGCATACC
1 AATTGTATAATTGAACCTAAAATTCTTATTTGAAATGATGATTTAACATGCCACGTCAGCATACC
*
35987081 GTTATACCGTTAATGATAATTAACAGCTCAGTGATTAAAATGTTACAACAAGTTAACATAAGTGT
66 GTTATACCGTTAATGACAATTAACAGCTCAGTGATTAAAATGTTACAACAAGTTAACATAAGTGT
35987146 CTAAAACGTAACATTTCAAACATAAGTGATTAAAATGTAACCTGAA
131 CTAAAACGTAACATTTCAAACATAAGTGATTAAAATGTAACCTGAA
35987192 A
1 A
35987193 CAAACAAAAG
Statistics
Matches: 172, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
175 168 0.98
176 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.31
Consensus pattern (176 bp):
AATTGTATAATTGAACCTAAAATTCTTATTTGAAATGATGATTTAACATGCCACGTCAGCATACC
GTTATACCGTTAATGACAATTAACAGCTCAGTGATTAAAATGTTACAACAAGTTAACATAAGTGT
CTAAAACGTAACATTTCAAACATAAGTGATTAAAATGTAACCTGAA
Found at i:35987288 original size:32 final size:34
Alignment explanation
Indices: 35987251--35987327 Score: 90
Period size: 32 Copynumber: 2.3 Consensus size: 34
35987241 TATAATTTAG
*
35987251 TAAAAATTATTTAGAAAATT-TTAATA-TTTA-TT
1 TAAAAATTATTTA-AAAATTGTTAAAATTTTATTT
35987283 TAAAAA-TATATTAAAAATTGTTAAAATTTTATTT
1 TAAAAATTAT-TTAAAAATTGTTAAAATTTTATTT
*
35987317 TTAAAATTATT
1 TAAAAATTATT
35987328 ATAATTTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
31 9 0.24
32 14 0.37
33 4 0.11
34 8 0.21
35 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (34 bp):
TAAAAATTATTTAAAAATTGTTAAAATTTTATTT
Found at i:35987687 original size:51 final size:51
Alignment explanation
Indices: 35987627--35987729 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
35987617 CTAACATAAC
35987627 ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGACAGATTTT
1 ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGACAGATTTT
35987678 ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGACAGATTTT
1 ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGACAGATTTT
35987729 A
1 A
35987730 AGTATCGCAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.49
Consensus pattern (51 bp):
ATATTTATTTGGTAAAACATTATCTGTTCTTTTTAGCGTATGACAGATTTT
Found at i:35990379 original size:21 final size:21
Alignment explanation
Indices: 35990355--35990395 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
35990345 TTTTACAATT
*
35990355 TAATCTTTATGTTTTAATTAA
1 TAATCTTTATGATTTAATTAA
* *
35990376 TAATTTTTTTGATTTAATTA
1 TAATCTTTATGATTTAATTA
35990396 TTCAACCTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (21 bp):
TAATCTTTATGATTTAATTAA
Found at i:35994647 original size:21 final size:21
Alignment explanation
Indices: 35994602--35994648 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
35994592 AAATAATAAA
*
35994602 GTAG-ATTATATATTATTTTT
1 GTAGTATTATATATTATATTT
35994622 GTAGTATTATATATTATGATTT
1 GTAGTATTATATATTAT-ATTT
35994644 -TAGTA
1 GTAGTA
35994649 AATTCATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 17 0.71
22 3 0.12
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (21 bp):
GTAGTATTATATATTATATTT
Found at i:35994727 original size:58 final size:57
Alignment explanation
Indices: 35994631--35994795 Score: 183
Period size: 58 Copynumber: 2.9 Consensus size: 57
35994621 TGTAGTATTA
* * *
35994631 TATATTATGATTTTAGTAAATTCATA--TAATAATAATTATATTAAGAATTTTATTAAAT
1 TATA-TATTATTTTATTAAATT-ATATTTAATAATAATTATATTAA-AATTTGATTAAAT
* * *
35994689 TATATATTATTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGGTTAAAT
1 TATATATTATTTTATTAAATTATATTTAATAATAATTATATTAAAATTTGATTAAAT
* * *
35994746 TATTTATTACTTTTATAAAATTATTTTTAATAATAATCT-TATTAAAATTT
1 TATATATTA-TTTTATTAAATTATATTTAATAATAAT-TATATTAAAATTT
35994796 AATAACAATA
Statistics
Matches: 92, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
56 3 0.03
57 33 0.36
58 55 0.60
59 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.52
Consensus pattern (57 bp):
TATATATTATTTTATTAAATTATATTTAATAATAATTATATTAAAATTTGATTAAAT
Found at i:35994982 original size:16 final size:17
Alignment explanation
Indices: 35994961--35995000 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
35994951 TGAATTACTG
*
35994961 ATTACAGT-TTTATTCA
1 ATTACAGTCTCTATTCA
35994977 ATTACA-TCTCTATTCA
1 ATTACAGTCTCTATTCA
35994993 ATTACAGT
1 ATTACAGT
35995001 GAACCAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 19 0.90
17 1 0.05
ACGTcount: A:0.33, C:0.17, G:0.05, T:0.45
Consensus pattern (17 bp):
ATTACAGTCTCTATTCA
Found at i:35995203 original size:20 final size:22
Alignment explanation
Indices: 35995178--35995217 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
35995168 GGCTGCGTAC
35995178 TGTTT-GG-GAGTTGATTTTAT
1 TGTTTGGGCGAGTTGATTTTAT
35995198 TGTTTGGGCGAGTTGATTTT
1 TGTTTGGGCGAGTTGATTTT
35995218 GTGTAATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 2 0.11
22 11 0.61
ACGTcount: A:0.12, C:0.03, G:0.33, T:0.53
Consensus pattern (22 bp):
TGTTTGGGCGAGTTGATTTTAT
Found at i:36005144 original size:20 final size:20
Alignment explanation
Indices: 36005119--36005163 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
36005109 TTAACTTTTA
36005119 AATCAAGTTAAAATGATTTC
1 AATCAAGTTAAAATGATTTC
* **
36005139 AATCAAGTTAGAATTTTTTC
1 AATCAAGTTAAAATGATTTC
36005159 AATCA
1 AATCA
36005164 GTAAAATTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (20 bp):
AATCAAGTTAAAATGATTTC
Found at i:36010181 original size:62 final size:58
Alignment explanation
Indices: 36010106--36010231 Score: 137
Period size: 62 Copynumber: 2.1 Consensus size: 58
36010096 ATAATTTTAT
** * * *
36010106 TTTAAT-AGATTAATATTTAATTTAATTTAATGTTTATCTTATACATAAATATTCTATTAA
1 TTTAATAAGATTAATATGAAATTTAATCTAATATTTATC-T-T-CATAAATATTATATTAA
* * *
36010166 TTTAATAAGATTTAATGTGAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAA
1 TTTAATAAGA-TTAATATGAAATTTAATCTAATATTTATCTTCATAAATATTATATTAA
36010225 TTTAATA
1 TTTAATA
36010232 TTAAAGTGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
59 21 0.38
60 7 0.12
61 4 0.07
62 24 0.43
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (58 bp):
TTTAATAAGATTAATATGAAATTTAATCTAATATTTATCTTCATAAATATTATATTAA
Found at i:36011711 original size:73 final size:73
Alignment explanation
Indices: 36011587--36011762 Score: 223
Period size: 73 Copynumber: 2.4 Consensus size: 73
36011577 AAAATAAGAA
* * * *
36011587 TTAGCGGCATTTTCCAA-AAAGCGCCGCCAAGA-ACCTAAGCCCAACGACGCCGTTTACC-GAGC
1 TTAGCGGCGTTTT-TAAGAAAGCGCCGCTAAAAGACCTAAGCCCAACGACGCCGTTT-CCTGAGC
* *
36011649 TTTTGGGGAT
64 TGTCGGGGAT
** * *
36011659 TTAGCGGCGTTTTTGGGAAAGCGCTGCTAAAAGACCTAAGCCCAACGGCGCCGTTTCCTGAGCTG
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAAGACCTAAGCCCAACGACGCCGTTTCCTGAGCTG
36011724 TCGGGGAT
66 TCGGGGAT
36011732 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAAA
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAAA
36011763 GCTCAAGGAT
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
72 26 0.30
73 62 0.70
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (73 bp):
TTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAAGACCTAAGCCCAACGACGCCGTTTCCTGAGCTG
TCGGGGAT
Found at i:36011810 original size:114 final size:114
Alignment explanation
Indices: 36011655--36012097 Score: 471
Period size: 114 Copynumber: 3.9 Consensus size: 114
36011645 GAGCTTTTGG
* * * * * *
36011655 GGATTTAGCGGCGTTTTTGGGAAAGCGCTGCTAAAAGACCTAAGCCCAACGGCGCCGTTTCCTGA
1 GGATTTAGCGGCATTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTGA
* *
36011720 GCTGTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAGCTCAA
66 GCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAA
* ** * ** * *
36011769 GGATTTATCGGCATTTTTTGGAAAGCGCCGGTAAAAAACCTAAGCACAACTACGTCGTTTTCTCA
1 GGATTTAGCGGCATTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTGA
* * * * * * * *
36011834 GCTTTCGAGGATATAGCAGCGCTTTCAAGAAAGCGCCACTAATGTTCAG
66 GCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAA
* * * * * *
36011883 GGCTTTAGCGGC-GTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAATGGCACCTTTTTCTG
1 GGATTTAGCGGCATTTTTTG-GAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTG
* * *
36011947 AGCTTTCGGGGATTTACCGGCGTTTGTACGAAAGCGCCGCTAATGCTC-A
65 AGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAA
* * * * *
36011996 GGTCTTTAGCGGCA-TTCTTGGAAAAGCGCCACAAAAAAAACTAAGCCCAACGGTGCCGTTTTCT
1 GG-ATTTAGCGGCATTTTTTGG-AAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCT
*
36012060 GAGCTTTCGGGGATTAAGCGGCGTTTTTTAA-AAAGCGC
64 GAGCTTTCGGGGATTTAGCGGCG-TTTTTAAGAAAGCGC
36012098 TGCAAAAAAA
Statistics
Matches: 265, Mismatches: 59, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
113 9 0.03
114 251 0.95
115 5 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (114 bp):
GGATTTAGCGGCATTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGGCGCCGTTTTCTGA
GCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAA
Found at i:36012097 original size:228 final size:228
Alignment explanation
Indices: 36011658--36012073 Score: 548
Period size: 228 Copynumber: 1.8 Consensus size: 228
36011648 CTTTTGGGGA
* * * * * *
36011658 TTTAGCGGCGTTTTTGGGAAAGCGCTGCTAAAAGACCTAAGCCCAACGGCGCCGTTTCCTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAACGGCACCGTTTCCTGAGCT
* * * *
36011723 GTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAAAGCTCAAGGATTTATCGGCATTTTTT
66 GTCGGGGATTTACCGGCGTTTGTAAGAAAGCGCCGCTAAAGCTCAAGGATTTAGCGGCATTTCTT
*** * * *
36011788 GGAAAGCGCCGGTAAAAAACCTAAGCACAACTACGTCGTTTTCTCAGCTTTCGAGGATATAGCAG
131 GGAAAGCGCCACAAAAAAAACTAAGCACAACGACGCCGTTTTCTCAGCTTTCGAGGATATAGCAG
36011853 CGCTTTCAAGAAAGCGCCACTAATGTTCAGGGC
196 CGCTTTCAAGAAAGCGCCACTAATGTTCAGGGC
* * *
36011886 TTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAATGGCACCTTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAACGGCACCGTTTCCTGAGCT
* * * *
36011951 TTCGGGGATTTACCGGCGTTTGTACGAAAGCGCCGCTAATGCTC-AGGTCTTTAGCGGCA-TTCT
66 GTCGGGGATTTACCGGCGTTTGTAAGAAAGCGCCGCTAAAGCTCAAGG-ATTTAGCGGCATTTCT
* ** * *
36012014 TGGAAAAGCGCCACAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCGGGGAT
130 TGG-AAAGCGCCACAAAAAAAACTAAGCACAACGACGCCGTTTTCTCAGCTTTCGAGGAT
36012074 TAAGCGGCGT
Statistics
Matches: 158, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
227 9 0.06
228 149 0.94
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (228 bp):
TTTAGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAACGGCACCGTTTCCTGAGCT
GTCGGGGATTTACCGGCGTTTGTAAGAAAGCGCCGCTAAAGCTCAAGGATTTAGCGGCATTTCTT
GGAAAGCGCCACAAAAAAAACTAAGCACAACGACGCCGTTTTCTCAGCTTTCGAGGATATAGCAG
CGCTTTCAAGAAAGCGCCACTAATGTTCAGGGC
Found at i:36012133 original size:187 final size:190
Alignment explanation
Indices: 36011889--36012284 Score: 530
Period size: 187 Copynumber: 2.1 Consensus size: 190
36011879 TCAGGGCTTT
* * * *
36011889 AGCGGCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAATGGCACCTTTTTCTGAGCTTTC
1 AGCGGCGTTTTTTAAAAAGCACCGCAAAAAAACCTAAGCCCAACGGCACCGTTTTCTGAGCTTTC
* * * *
36011954 GGGGATTTACCGGCGTTTGTACGAAAGCGCCGCTAATGCTCAGGTC-TTTAGCGG-CATTCTTGG
66 AGGGATTTACCGGCCTTTGTACGAAAGCGCCGCTAATGATCAGGGCTTTTAGCGGTCATTCTTGG
** *
36012017 AAAAGCGCCAC-AAAAAAAACTAAGCCCAACGGTGCCGTTTTCTG-AGCTTTCGGGGATTA
131 AAAAGCGCCACAAAAAAAAACTAAGCCCAACGGCACCGTTTTCGGTA-CTTTCGGGGATTA
* *
36012076 AGCGGCGTTTTTTAAAAAGCGCTGCAAAAAAACCTAAGCCCAACGGCACCGTTTTCTGAGCTTTC
1 AGCGGCGTTTTTTAAAAAGCACCGCAAAAAAACCTAAGCCCAACGGCACCGTTTTCTGAGCTTTC
** * * ** *
36012141 AGGGATTTAGTGGCCTTTTTATGAAAGCGCCGCTAATGATCAGGGCTTTTAGCGGTGTTTTTTGG
66 AGGGATTTACCGGCCTTTGTACGAAAGCGCCGCTAATGATCAGGGCTTTTAGCGGTCATTCTTGG
* * *
36012206 GAAAGCGCCGCAAAAAAAAACTAAGCCCAACGGCACCGTTTTCGGTACTTTCGGGGATTT
131 AAAAGCGCCACAAAAAAAAACTAAGCCCAACGGCACCGTTTTCGGTACTTTCGGGGATTA
*
36012266 AGCGGCATTTTTTAGAAAA
1 AGCGGCGTTTTTTA-AAAA
36012285 CGCCTCTAAT
Statistics
Matches: 180, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
187 97 0.54
188 8 0.04
189 15 0.08
190 55 0.31
191 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.26
Consensus pattern (190 bp):
AGCGGCGTTTTTTAAAAAGCACCGCAAAAAAACCTAAGCCCAACGGCACCGTTTTCTGAGCTTTC
AGGGATTTACCGGCCTTTGTACGAAAGCGCCGCTAATGATCAGGGCTTTTAGCGGTCATTCTTGG
AAAAGCGCCACAAAAAAAAACTAAGCCCAACGGCACCGTTTTCGGTACTTTCGGGGATTA
Found at i:36012170 original size:73 final size:73
Alignment explanation
Indices: 36012017--36012160 Score: 207
Period size: 73 Copynumber: 2.0 Consensus size: 73
36012007 GCATTCTTGG
** *
36012017 AAAAGCGCCACAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCGGGGATTAAGCGGC
1 AAAAGCGCCACAAAAAAAACTAAGCCCAACGGCACCGTTTTCTGAGCTTTCAGGGATTAAGCGGC
*
36012082 GTTTTTTA
66 CTTTTTTA
** * * *
36012090 AAAAGCGCTGCAAAAAAACCTAAGCCCAACGGCACCGTTTTCTGAGCTTTCAGGGATTTAGTGGC
1 AAAAGCGCCACAAAAAAAACTAAGCCCAACGGCACCGTTTTCTGAGCTTTCAGGGATTAAGCGGC
36012155 CTTTTT
66 CTTTTT
36012161 ATGAAAGCGC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
73 62 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (73 bp):
AAAAGCGCCACAAAAAAAACTAAGCCCAACGGCACCGTTTTCTGAGCTTTCAGGGATTAAGCGGC
CTTTTTTA
Found at i:36012601 original size:37 final size:36
Alignment explanation
Indices: 36012543--36012630 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 36
36012533 GGATTTAAGG
* *
36012543 TTTATGGGTTAGGTGTTATGCTTTAGGGGTTAGGAGA
1 TTTA-GGGTTAGGGGTTATGCTTTAGAGGTTAGGAGA
*
36012580 TTTAGGGATTAGGGGTTATGCTTTAGAGGTTAGGGGA
1 TTTAGGG-TTAGGGGTTATGCTTTAGAGGTTAGGAGA
36012617 TTTAGGGGTTAGGG
1 TTTA-GGGTTAGGG
36012631 TTTCAACGTC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
36 3 0.07
37 40 0.87
38 3 0.07
ACGTcount: A:0.19, C:0.02, G:0.41, T:0.38
Consensus pattern (36 bp):
TTTAGGGTTAGGGGTTATGCTTTAGAGGTTAGGAGA
Found at i:36012630 original size:16 final size:16
Alignment explanation
Indices: 36012564--36012630 Score: 62
Period size: 16 Copynumber: 3.9 Consensus size: 16
36012554 GGTGTTATGC
*
36012564 TTTAGGGGTTAGGAGA
1 TTTAGGGGTTAGGGGA
*
36012580 TTTAGGGATTAGGGGTTA
1 TTTAGGGGTTAGGGG--A
*
36012598 TGCTTTAGAGGTTAGGGGA
1 ---TTTAGGGGTTAGGGGA
36012617 TTTAGGGGTTAGGG
1 TTTAGGGGTTAGGG
36012631 TTTCAACGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
16 26 0.63
18 1 0.02
19 1 0.02
21 13 0.32
ACGTcount: A:0.21, C:0.01, G:0.43, T:0.34
Consensus pattern (16 bp):
TTTAGGGGTTAGGGGA
Found at i:36012722 original size:7 final size:7
Alignment explanation
Indices: 36012712--36012745 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
36012702 TAATGTCTAT
36012712 GGTTTAG
1 GGTTTAG
*
36012719 GGTTTAA
1 GGTTTAG
36012726 GGTTTAG
1 GGTTTAG
36012733 GGTTTAG
1 GGTTTAG
36012740 GGTTTA
1 GGTTTA
36012746 TGGTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:36012724 original size:21 final size:21
Alignment explanation
Indices: 36012700--36012745 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
36012690 AAATTTAAGA
* *
36012700 TTTAATGTCTATGGTTTAGGG
1 TTTAAGGTCTAGGGTTTAGGG
*
36012721 TTTAAGGTTTAGGGTTTAGGG
1 TTTAAGGTCTAGGGTTTAGGG
36012742 TTTA
1 TTTA
36012746 TGGTATAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (21 bp):
TTTAAGGTCTAGGGTTTAGGG
Found at i:36012814 original size:20 final size:20
Alignment explanation
Indices: 36012791--36012841 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
36012781 TCTGTTAGAT
36012791 TTTGAGTTTGGGGTTTAAGG
1 TTTGAGTTTGGGGTTTAAGG
* * *
36012811 TTTGAGTTAAGGGTTTTAGGG
1 TTTGAGTT-TGGGGTTTAAGG
36012832 TTT-AGTTTGG
1 TTTGAGTTTGG
36012842 AAATTGAAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.08
20 12 0.46
21 12 0.46
ACGTcount: A:0.16, C:0.00, G:0.37, T:0.47
Consensus pattern (20 bp):
TTTGAGTTTGGGGTTTAAGG
Found at i:36013109 original size:15 final size:15
Alignment explanation
Indices: 36013091--36013124 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
36013081 GTTGGTTGTT
*
36013091 GGTTTTAGGGTTTAG
1 GGTTTAAGGGTTTAG
36013106 GGTTTAAGGGTTTAG
1 GGTTTAAGGGTTTAG
36013121 GGTT
1 GGTT
36013125 AGATTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (15 bp):
GGTTTAAGGGTTTAG
Found at i:36013115 original size:8 final size:7
Alignment explanation
Indices: 36013094--36013124 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
36013084 GGTTGTTGGT
36013094 TTTAGGG
1 TTTAGGG
36013101 TTTAGGG
1 TTTAGGG
36013108 TTTAAGGG
1 TTT-AGGG
36013116 TTTAGGG
1 TTTAGGG
36013123 TT
1 TT
36013125 AGATTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:36013180 original size:15 final size:16
Alignment explanation
Indices: 36013162--36013194 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36013152 AGATAAATAT
*
36013162 AAAATAT-TATTTCAA
1 AAAATATATATATCAA
36013177 AAAATATATATATCAA
1 AAAATATATATATCAA
36013193 AA
1 AA
36013195 TGGGTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATATATATATCAA
Found at i:36014011 original size:115 final size:114
Alignment explanation
Indices: 36013520--36014102 Score: 923
Period size: 114 Copynumber: 5.1 Consensus size: 114
36013510 GCGCTTCAGC
* * *
36013520 AAAAACGCCGCTAAAGGTGATGTATTACCAGCATTTTATGAAGAAACGCTGCAAATTTCCTTTAA
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
* * *
36013585 GCGTAATAGAGACGGTGCCTTTTTTTGTTTTCTTTTAGTGGCGCATTTT
66 GTGTAACAGAGACGGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
* *
36013634 AAAAACGCCACTAAAGGTGATGTATTATCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
* * *
36013699 GTGTAACAGAGATGGTGTCGTTTTTTGTTTTCTTTTAGTGGCGCCTTTT
66 GTGTAACAGAGACGGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
* *
36013748 AAAAATGCCGCTAAAGGTGATGTATTACCGGCGTTTAATGAAGAAACGCCGCAAATTTCCTTTAA
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
* *
36013813 GTGTAATAGAGACAGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
66 GTGTAACAGAGACGGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
* *
36013862 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAATGCCACAAATTTCCTTTAA
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
36013927 GTGTAACAGAGACGGTGCCGTTTTTATGTTTTCTTTTAGTGGCGCATTTT
66 GTGTAACAGAGACGGTGCCGTTTTT-TGTTTTCTTTTAGTGGCGCATTTT
* * * *
36013977 AAAAATGCTGCTAAAGGTGATGTATTACCGGCGTTTTACGAAGAAGCGCCGCAAATTTCCTTTAA
1 AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
* ** *
36014042 GTGTAACAAAGACGGTGACATTTTTTTGTTTTCTTTTAGTGGCGCATTTA
66 GTGTAACAGAGACGGTG-CCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
36014092 AAAAACGCCGC
1 AAAAACGCCGC
36014103 AAATATTTAT
Statistics
Matches: 429, Mismatches: 38, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
114 292 0.68
115 131 0.31
116 6 0.01
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (114 bp):
AAAAACGCCGCTAAAGGTGATGTATTACCGGCGTTTTATGAAGAAACGCCGCAAATTTCCTTTAA
GTGTAACAGAGACGGTGCCGTTTTTTGTTTTCTTTTAGTGGCGCATTTT
Found at i:36014581 original size:173 final size:175
Alignment explanation
Indices: 36014306--36014638 Score: 553
Period size: 173 Copynumber: 1.9 Consensus size: 175
36014296 CATTATATCG
* * * *
36014306 AAACTTAAACGCCAACTTAAACGTGACTTATCCCTCAAAATTCCATCCTCCCCCAAATCCCTAAA
1 AAACTTAAACCCCAACTTAAACGTGACTTATCCCCCAAAATCCCATCCTCCCCCAAATCCCCAAA
*
36014371 ATTTCCTCTAATCCACATTTCCCCAAACCCGACCTCTTGCAACGTTGCCGTTTCCTCTGGCGCAT
66 ATTTCCCCTAATCCACATTTCCCCAAACCCGACCTCTTGCAACGTTGCCGTTTCCTCTGGCGCAT
*
36014436 CACCGTCTCCGTCCGTTGGTCTCCTCTGCCCCATACATTTTTCCA
131 CACCGTCTCCGTCCGTCGGTCTCCTCTGCCCCATACATTTTTCCA
* * *
36014481 AAACTTAAACCCCAAC-T-ATCGTGACTTATCCCCCAAAATCCCATTCTCCCCCAAGTCCCCAAA
1 AAACTTAAACCCCAACTTAAACGTGACTTATCCCCCAAAATCCCATCCTCCCCCAAATCCCCAAA
* *
36014544 ATTTCCCCTAATCCATATTTCCCCAAACCCGACCTCTTGCGACGTTGCCGTTTCCTCTGGCGCAT
66 ATTTCCCCTAATCCACATTTCCCCAAACCCGACCTCTTGCAACGTTGCCGTTTCCTCTGGCGCAT
36014609 CACCGTCTCCGTCCGTCGGTCTCCTCTGCC
131 CACCGTCTCCGTCCGTCGGTCTCCTCTGCC
36014639 GTAACAATCG
Statistics
Matches: 147, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
173 131 0.89
174 1 0.01
175 15 0.10
ACGTcount: A:0.22, C:0.40, G:0.11, T:0.27
Consensus pattern (175 bp):
AAACTTAAACCCCAACTTAAACGTGACTTATCCCCCAAAATCCCATCCTCCCCCAAATCCCCAAA
ATTTCCCCTAATCCACATTTCCCCAAACCCGACCTCTTGCAACGTTGCCGTTTCCTCTGGCGCAT
CACCGTCTCCGTCCGTCGGTCTCCTCTGCCCCATACATTTTTCCA
Found at i:36015696 original size:9 final size:9
Alignment explanation
Indices: 36015682--36015740 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 9
36015672 CTTAATTTAA
*
36015682 TACATAATT
1 TACATAACT
36015691 TACATAACT
1 TACATAACT
*
36015700 CACATAACT
1 TACATAACT
* *
36015709 TACAAAAGT
1 TACATAACT
* *
36015718 CACAT-ACA
1 TACATAACT
36015726 TACATAACT
1 TACATAACT
36015735 TA-ATAA
1 TACATAA
36015741 ATGGTACATA
Statistics
Matches: 38, Mismatches: 11, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
8 9 0.24
9 29 0.76
ACGTcount: A:0.49, C:0.20, G:0.02, T:0.29
Consensus pattern (9 bp):
TACATAACT
Found at i:36015867 original size:9 final size:9
Alignment explanation
Indices: 36015853--36016183 Score: 206
Period size: 9 Copynumber: 36.7 Consensus size: 9
36015843 TATTGACACA
36015853 TTACATAAC
1 TTACATAAC
36015862 TTACATAA-
1 TTACATAAC
36015870 -TACATAAC
1 TTACATAAC
*
36015878 TTAAATAA-
1 TTACATAAC
*
36015886 ATACATAAC
1 TTACATAAC
36015895 TTACATAA-
1 TTACATAAC
36015903 -TACATAAC
1 TTACATAAC
36015911 TTACATAATAAC
1 TTAC---ATAAC
*
36015923 TTACATAGC
1 TTACATAAC
*
36015932 TTATATAAC
1 TTACATAAC
36015941 TTACATAAC
1 TTACATAAC
*
36015950 TTACATATC
1 TTACATAAC
**
36015959 TTTTATAA-
1 TTACATAAC
36015967 TATATGCATAAC
1 T-TA--CATAAC
* *
36015979 TTATATAAT
1 TTACATAAC
*
36015988 TTACTTAA-
1 TTACATAAC
36015996 -TACATAAC
1 TTACATAAC
*
36016004 TTACATAATAAT
1 TTAC---ATAAC
*
36016016 TTACATAGC
1 TTACATAAC
*
36016025 TTATATAAC
1 TTACATAAC
36016034 TTACATAAC
1 TTACATAAC
*
36016043 TTATATAAC
1 TTACATAAC
*
36016052 TTACATAAT
1 TTACATAAC
36016061 TTAC-TAA-
1 TTACATAAC
*
36016068 ATACATAA-
1 TTACATAAC
* *
36016076 TCAACATATAT
1 T-TACATA-AC
*
36016087 TATATCTTAAC
1 T-TA-CATAAC
36016098 TTACATAATAAC
1 TTAC---ATAAC
*
36016110 TTACATAGC
1 TTACATAAC
*
36016119 TTATATAAC
1 TTACATAAC
36016128 TTACATAA-
1 TTACATAAC
36016136 -TACATAAC
1 TTACATAAC
*
36016144 CTACATAAC
1 TTACATAAC
*
36016153 TTATATAAC
1 TTACATAAC
36016162 TTACATAA-
1 TTACATAAC
36016170 -TACATAAC
1 TTACATAAC
36016178 TTACAT
1 TTACAT
36016184 TGAGAAAAAT
Statistics
Matches: 250, Mismatches: 43, Indels: 58
0.71 0.12 0.17
Matches are distributed among these distances:
7 37 0.15
8 13 0.05
9 158 0.63
10 3 0.01
11 10 0.04
12 29 0.12
ACGTcount: A:0.45, C:0.16, G:0.01, T:0.37
Consensus pattern (9 bp):
TTACATAAC
Found at i:36015896 original size:33 final size:33
Alignment explanation
Indices: 36015854--36015918 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
36015844 ATTGACACAT
36015854 TACATAACTTACATAATACATAACTTAAATAAA
1 TACATAACTTACATAATACATAACTTAAATAAA
*
36015887 TACATAACTTACATAATACATAACTTACATAA
1 TACATAACTTACATAATACATAACTTAAATAA
36015919 TAACTTACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (33 bp):
TACATAACTTACATAATACATAACTTAAATAAA
Found at i:36016011 original size:93 final size:89
Alignment explanation
Indices: 36015853--36016151 Score: 336
Period size: 93 Copynumber: 3.3 Consensus size: 89
36015843 TATTGACACA
* * * *
36015853 TTACATAACTTACATAA--TACATAACTTAAATAAATACATAACTTACATAATACATAACTTACA
1 TTACATAACTTACATAACTTACATAA-TTTACTAAATACATAATTTACTTAATACATAACTTACA
36015916 TAATAACTTACATAGCTTATATAAC
65 TAATAACTTACATAGCTTATATAAC
* ** * * *
36015941 TTACATAACTTACATATCTTTTATAATATATGCATAACTTATATAATTTACTTAATACATAACTT
1 TTACATAACTTACATAACTTACATAAT-T-TAC-TAA-ATACATAATTTACTTAATACATAACTT
*
36016006 ACATAATAATTTACATAGCTTATATAAC
62 ACATAATAACTTACATAGCTTATATAAC
* ** *
36016034 TTACATAACTTATATAACTTACATAATTTACTAAATACATAATCAACATATATTATATCTTAACT
1 TTACATAACTTACATAACTTACATAATTTACTAAATACATAATTTAC-T-TA--ATA-CATAACT
36016099 TACATAATAACTTACATAGCTTATATAAC
61 TACATAATAACTTACATAGCTTATATAAC
*
36016128 TTACATAA--TACATAACCTACATAA
1 TTACATAACTTACATAACTTACATAA
36016152 CTTATATAAC
Statistics
Matches: 176, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
88 16 0.09
89 10 0.06
90 10 0.06
91 4 0.02
92 18 0.10
93 76 0.43
94 42 0.24
ACGTcount: A:0.45, C:0.16, G:0.01, T:0.37
Consensus pattern (89 bp):
TTACATAACTTACATAACTTACATAATTTACTAAATACATAATTTACTTAATACATAACTTACAT
AATAACTTACATAGCTTATATAAC
Found at i:36018502 original size:43 final size:43
Alignment explanation
Indices: 36018455--36018536 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
36018445 AATGGTGTTT
36018455 GTGAAGAAAGCGCCACTAAAGAACAT-TTCTTTTAGCGGCATTC
1 GTGAAGAAAGCGCCACTAAAGAACATGTTC-TTTAGCGGCATTC
* * *
36018498 GTGAAGAAAGCGTCGCTAAAGATCATGTTCTTTAGCGGC
1 GTGAAGAAAGCGCCACTAAAGAACATGTTCTTTAGCGGC
36018537 GTTTTTCTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
43 32 0.91
44 3 0.09
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (43 bp):
GTGAAGAAAGCGCCACTAAAGAACATGTTCTTTAGCGGCATTC
Found at i:36018572 original size:42 final size:43
Alignment explanation
Indices: 36018505--36018790 Score: 413
Period size: 42 Copynumber: 6.8 Consensus size: 43
36018495 TTCGTGAAGA
* * *
36018505 AAGCGTCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTCTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
36018548 -AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
* * *
36018590 -AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
*
36018632 AAGCGCCACTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
* * * * *
36018675 -AGTGCCACTAAAGAACATGATCTTTAGCGGCGTCTTTATTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
36018717 AAGCGCCGCTAAAGAACATGATCTTTAGCGGC-TTTTT-TT-T
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
*
36018757 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGT
36018791 CTATTTTCGT
Statistics
Matches: 222, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 32 0.14
41 3 0.01
42 120 0.54
43 67 0.30
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (43 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTCTTCT
Found at i:36018577 original size:85 final size:85
Alignment explanation
Indices: 36018506--36018792 Score: 438
Period size: 85 Copynumber: 3.4 Consensus size: 85
36018496 TCGTGAAGAA
* * * * * * *
36018506 AGCGTCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTCTTCT-AGCGCCGCTAAAGAACATGATC
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCACTAAAGAACATGATC
36018570 TTTAGCGGCGTTTTTCTTCT
66 TTTAGCGGCGTTTTTCTTCT
36018590 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCACTAAAGAACATGATC
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCACTAAAGAACATGATC
36018655 TTTAGCGGCGTTTTTCTTCT
66 TTTAGCGGCGTTTTTCTTCT
* * *
36018675 AGTGCCACTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCGCTAAAGAACATGATC
1 AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCACTAAAGAACATGATC
36018740 TTTAGCGGC-TTTTT-TT-T
66 TTTAGCGGCGTTTTTCTTCT
*
36018757 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTCT
1 -AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCT
36018793 ATTTTCGTAA
Statistics
Matches: 188, Mismatches: 13, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
82 1 0.01
83 34 0.18
84 41 0.22
85 112 0.60
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (85 bp):
AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTCTTTATTTTAAGCGCCACTAAAGAACATGATC
TTTAGCGGCGTTTTTCTTCT
Found at i:36019793 original size:17 final size:16
Alignment explanation
Indices: 36019749--36019794 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 16
36019739 ATTAAACCAC
36019749 AATCAAAATTT-TATA
1 AATCAAAATTTATATA
*
36019764 AAT-ATAA-TTATATA
1 AATCAAAATTTATATA
36019778 ATATCAAAATTTATATA
1 A-ATCAAAATTTATATA
36019795 TCAAATTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 2 0.08
14 8 0.32
15 5 0.20
16 3 0.12
17 7 0.28
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (16 bp):
AATCAAAATTTATATA
Found at i:36019801 original size:29 final size:30
Alignment explanation
Indices: 36019749--36019830 Score: 82
Period size: 29 Copynumber: 2.8 Consensus size: 30
36019739 ATTAAACCAC
* *
36019749 AATCAAAATTTTATAAATATAATTATATAAT
1 AATCAAAA-TTTATATATATAATTACATAAT
*
36019780 -ATCAAAATTTATATATCA-AATTACATATT
1 AATCAAAATTTATATAT-ATAATTACATAAT
36019809 GAATCAAAA-TTA-ATATATAATT
1 -AATCAAAATTTATATATATAATT
36019831 TTAATATTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
28 1 0.02
29 25 0.57
30 11 0.25
31 7 0.16
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.40
Consensus pattern (30 bp):
AATCAAAATTTATATATATAATTACATAAT
Found at i:36021665 original size:10 final size:10
Alignment explanation
Indices: 36021652--36021811 Score: 68
Period size: 10 Copynumber: 16.2 Consensus size: 10
36021642 AATTTAGTAC
36021652 AATTATAAAA
1 AATTATAAAA
36021662 AATTAT-AAA
1 AATTATAAAA
36021671 AA-TATATAAA
1 AATTATA-AAA
*
36021681 AATGAATAAATA
1 AAT-TATAAA-A
36021693 AAGCTTATAAAA
1 AA--TTATAAAA
**
36021705 AATCCT-AAA
1 AATTATAAAA
**
36021714 AATCCTAAAA
1 AATTATAAAA
*
36021724 TATT-T-AAA
1 AATTATAAAA
*
36021732 AATTATATAA
1 AATTATAAAA
*
36021742 ACTTATAAAA
1 AATTATAAAA
*
36021752 AA-TA-GAAA
1 AATTATAAAA
*
36021760 AATTAGGAAAA
1 AATTA-TAAAA
*
36021771 AATCATAAAA
1 AATTATAAAA
36021781 AA-TAT-AAA
1 AATTATAAAA
* *
36021789 TATTATCAAA
1 AATTATAAAA
*
36021799 ACTTATAACAA
1 AATTATAA-AA
36021810 AA
1 AA
36021812 AATAAAAATA
Statistics
Matches: 113, Mismatches: 21, Indels: 31
0.68 0.13 0.19
Matches are distributed among these distances:
8 18 0.16
9 25 0.22
10 43 0.38
11 12 0.11
12 9 0.08
13 5 0.04
14 1 0.01
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.28
Consensus pattern (10 bp):
AATTATAAAA
Found at i:36021673 original size:9 final size:9
Alignment explanation
Indices: 36021652--36021820 Score: 70
Period size: 9 Copynumber: 17.3 Consensus size: 9
36021642 AATTTAGTAC
36021652 AATTATAAAA
1 AATTAT-AAA
36021662 AATTATAAA
1 AATTATAAA
36021671 AATATATAAA
1 AAT-TATAAA
*
36021681 AATGAATAAATA
1 AAT-TAT-AA-A
36021693 AAGCTTATAAAA
1 AA--TTAT-AAA
**
36021705 AATCCTAAA
1 AATTATAAA
**
36021714 AATCCTAAA
1 AATTATAAA
36021723 ATATT-TAAA
1 A-ATTATAAA
36021732 AATTATATAA
1 AATTATA-AA
*
36021742 ACTTATAAA
1 AATTATAAA
* *
36021751 AAATAGAAA
1 AATTATAAA
*
36021760 AATTAGGAAAA
1 AATTA--TAAA
*
36021771 AATCATAAA
1 AATTATAAA
*
36021780 AAATATAAA
1 AATTATAAA
*
36021789 TATTATCAAA
1 AATTAT-AAA
*
36021799 ACTTATAACA
1 AATTATAA-A
**
36021809 AAAAATAAA
1 AATTATAAA
36021818 AAT
1 AAT
36021821 ATTTAAATTA
Statistics
Matches: 123, Mismatches: 24, Indels: 25
0.72 0.14 0.15
Matches are distributed among these distances:
8 3 0.02
9 57 0.46
10 42 0.34
11 9 0.07
12 6 0.05
13 5 0.04
14 1 0.01
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (9 bp):
AATTATAAA
Found at i:36021681 original size:19 final size:19
Alignment explanation
Indices: 36021655--36021820 Score: 53
Period size: 19 Copynumber: 8.6 Consensus size: 19
36021645 TTAGTACAAT
36021655 TATA-AAAAATTATAAAAA
1 TATATAAAAATTATAAAAA
*
36021673 TATATAAAAATGAATAAATAA
1 TATATAAAAAT-TATAAA-AA
**
36021694 -AGCTTATAAAAAATCCTAAAAA
1 TA---TAT-AAAAATTATAAAAA
* *
36021716 TCCTA-AAATATT-TAAAAA
1 T-ATATAAAAATTATAAAAA
*
36021734 T-TATATAAACTTATAAAAA
1 TATATA-AAAATTATAAAAA
* *
36021753 -ATAGAAAAATTAGGAAAAA
1 TATATAAAAATTA-TAAAAA
* *
36021772 -ATCATAAAAAATATAAATA
1 TAT-ATAAAAATTATAAAAA
*
36021791 T-TATCAAAACTTATAACAAA
1 TATAT-AAAAATTATAA-AAA
*
36021811 -AAATAAAAAT
1 TATATAAAAAT
36021821 ATTTAAATTA
Statistics
Matches: 109, Mismatches: 20, Indels: 37
0.66 0.12 0.22
Matches are distributed among these distances:
16 2 0.02
17 1 0.01
18 23 0.21
19 46 0.42
20 18 0.17
21 4 0.04
22 2 0.02
23 7 0.06
24 6 0.06
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (19 bp):
TATATAAAAATTATAAAAA
Found at i:36021794 original size:57 final size:58
Alignment explanation
Indices: 36021711--36021820 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 58
36021701 AAAAAATCCT
* * * *
36021711 AAAAATCCTAAAATATTTAAAAATTAT-ATAAACTTATAA-AAAATAGAAAAATTAGGA
1 AAAAATCATAAAAAATATAAAAATTATCA-AAACTTATAACAAAAAAGAAAAATTAGGA
* *
36021768 AAAAATCATAAAAAATATAAATATTATCAAAACTTATAACAAAAAATAAAAAT
1 AAAAATCATAAAAAATATAAAAATTATCAAAACTTATAACAAAAAAGAAAAAT
36021821 ATTTAAATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
57 33 0.73
58 12 0.27
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (58 bp):
AAAAATCATAAAAAATATAAAAATTATCAAAACTTATAACAAAAAAGAAAAATTAGGA
Found at i:36021799 original size:29 final size:28
Alignment explanation
Indices: 36021711--36021820 Score: 85
Period size: 29 Copynumber: 3.9 Consensus size: 28
36021701 AAAAAATCCT
* * *
36021711 AAAAATCCTAAAATATTTAAAAATTATA
1 AAAAATCATAAAAAATATAAAAATTATA
* * * * *
36021739 TAAACTTATAAAAAATAGAAAAATTAGGA
1 AAAAATCATAAAAAATATAAAAATTA-TA
* *
36021768 AAAAATCATAAAAAATATAAATATTATC
1 AAAAATCATAAAAAATATAAAAATTATA
* * *
36021796 AAAACTTATAACAAAAAATAAAAAT
1 AAAAATCATAA-AAAATATAAAAAT
36021821 ATTTAAATTA
Statistics
Matches: 61, Mismatches: 19, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
28 28 0.46
29 33 0.54
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (28 bp):
AAAAATCATAAAAAATATAAAAATTATA
Found at i:36026944 original size:44 final size:44
Alignment explanation
Indices: 36026896--36026985 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 44
36026886 ATATCTCAAG
*
36026896 GTCCATGTTTATAACATGGCAATGAAGGAAGAATTGACGGAAAA
1 GTCCATGTTTATAACATGGCAATGAAGAAAGAATTGACGGAAAA
* *
36026940 GTCCATGTTTATAACATGGCAATTAAGAAATAATTGACGGAAAA
1 GTCCATGTTTATAACATGGCAATGAAGAAAGAATTGACGGAAAA
36026984 GT
1 GT
36026986 ACCTTGGTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGCAATGAAGAAAGAATTGACGGAAAA
Found at i:36027084 original size:50 final size:50
Alignment explanation
Indices: 36027009--36027255 Score: 316
Period size: 50 Copynumber: 4.9 Consensus size: 50
36026999 CATGTCAACA
*
36027009 CGAGATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
*
36027059 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGTCATTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
* * ** *
36027109 TGAGATGAGAGGTCTCC-TGTAAGACCATGTCTGGCACATGGTGTTGGAAC
1 CGAGATGAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
* * * *
36027159 CGAGATGAGAGGTCCCCTGTAAGACCATGTCTGGGACATGACATGGGCAT
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
* ** * * * *
36027209 CGATATGAGAACTCCCATGTAAGACCATTTCTAGGATATGACATTGG
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
36027256 GAGTACAGGA
Statistics
Matches: 171, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 2 0.01
50 167 0.98
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC
Found at i:36032871 original size:44 final size:44
Alignment explanation
Indices: 36032822--36032911 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
36032812 ATATCTCAAG
*
36032822 GTCCATGTTTATAACATGGCAATGAAGGAAGAAATGACGGAAAA
1 GTCCATGTTTATAACATGGCAATGAAGAAAGAAATGACGGAAAA
*
36032866 GTCCATGTTTATAACATGGCAATTAAGAAAGAAATGACGGAAAA
1 GTCCATGTTTATAACATGGCAATGAAGAAAGAAATGACGGAAAA
36032910 GT
1 GT
36032912 ACCTTGGTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.22
Consensus pattern (44 bp):
GTCCATGTTTATAACATGGCAATGAAGAAAGAAATGACGGAAAA
Done.