Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 121 of 214
Found at i:36733406 original size:17 final size:17
Alignment explanation
Indices: 36733339--36733403 Score: 60
Period size: 17 Copynumber: 3.7 Consensus size: 17
36733329 TAAATTTATC
*
36733339 TTTTTATTTTTTTACTT
1 TTTTTATTTTTTTATTT
*
36733356 TTTTGATTTTTTT-TCTT
1 TTTTTATTTTTTTAT-TT
* *
36733373 ATTTCATTTTGTTTATTT
1 TTTTTATTTT-TTTATTT
36733391 TGTTTTATTTTTT
1 T-TTTTATTTTTT
36733404 ATTATTAACT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
17 22 0.58
18 7 0.18
19 9 0.24
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.80
Consensus pattern (17 bp):
TTTTTATTTTTTTATTT
Found at i:36733452 original size:28 final size:27
Alignment explanation
Indices: 36733419--36733478 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
36733409 TAACTTTAAA
36733419 ATGATATAATATAATATATATTTTAATT
1 ATGATATAATA-AATATATATTTTAATT
* *
36733447 ATGATATAATAAATTTATTTTTTAATT
1 ATGATATAATAAATATATATTTTAATT
36733474 ATGAT
1 ATGAT
36733479 TGGTTTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 19 0.63
28 11 0.37
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (27 bp):
ATGATATAATAAATATATATTTTAATT
Found at i:36733792 original size:19 final size:18
Alignment explanation
Indices: 36733761--36733830 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 18
36733751 TTTAATTAAT
*
36733761 TTTAAAAT-TTTAAAATAA
1 TTTAAAATAATTAAAAT-A
36733779 TTTAAAATAATTAAGAATA
1 TTTAAAATAATTAA-AATA
* *
36733798 TATAAAAAAATT-AAAT-
1 TTTAAAATAATTAAAATA
36733814 TTTAAAAATAAATTAAA
1 TTT-AAAAT-AATTAAA
36733831 TGTTGACATA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
16 2 0.05
17 7 0.17
18 13 0.31
19 17 0.40
20 3 0.07
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.37
Consensus pattern (18 bp):
TTTAAAATAATTAAAATA
Found at i:36734353 original size:17 final size:18
Alignment explanation
Indices: 36734331--36734376 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
36734321 TAAAGTTAAT
36734331 AATAAAAAATGAAACAA-
1 AATAAAAAATGAAACAAG
*
36734348 AATAAACAAAATGAAATAAG
1 AAT-AA-AAAATGAAACAAG
36734368 AA-AAAAAAT
1 AATAAAAAAT
36734377 CAAAAAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 8 0.32
18 4 0.16
19 11 0.44
20 2 0.08
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (18 bp):
AATAAAAAATGAAACAAG
Found at i:36734398 original size:16 final size:17
Alignment explanation
Indices: 36734334--36734406 Score: 62
Period size: 18 Copynumber: 4.2 Consensus size: 17
36734324 AGTTAATAAT
36734334 AAAAAATGAAACAAA-ATA
1 AAAAAAT-AAA-AAAGATA
*
36734352 AACAAAATGAAATAAGA-A
1 AA-AAAAT-AAAAAAGATA
*
36734370 AAAAAATCAAAAAAGTTA
1 AAAAAAT-AAAAAAGATA
36734388 AAAAAAT-AAAAAGATA
1 AAAAAATAAAAAAGATA
36734404 AAA
1 AAA
36734407 TTTATTAAGG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
16 11 0.23
17 11 0.23
18 15 0.32
19 10 0.21
ACGTcount: A:0.77, C:0.04, G:0.07, T:0.12
Consensus pattern (17 bp):
AAAAAATAAAAAAGATA
Found at i:36734469 original size:26 final size:25
Alignment explanation
Indices: 36734433--36734490 Score: 98
Period size: 26 Copynumber: 2.3 Consensus size: 25
36734423 ATAAAAAAGT
36734433 AAAAAAAAAGAAATATGAAAATAAA
1 AAAAAAAAAGAAATATGAAAATAAA
36734458 AAAAACAAAAGAAATATGAAAATAAA
1 AAAAA-AAAAGAAATATGAAAATAAA
*
36734484 AGAAAAA
1 AAAAAAA
36734491 GAAAACAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 7 0.23
26 24 0.77
ACGTcount: A:0.79, C:0.02, G:0.09, T:0.10
Consensus pattern (25 bp):
AAAAAAAAAGAAATATGAAAATAAA
Found at i:36734502 original size:17 final size:16
Alignment explanation
Indices: 36734455--36734500 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
36734445 ATATGAAAAT
36734455 AAAA-AAAACAAAAGA
1 AAAAGAAAACAAAAGA
* *
36734470 AATATGAAAATAAAAGA
1 AA-AAGAAAACAAAAGA
36734487 AAAAGAAAACAAAA
1 AAAAGAAAACAAAA
36734501 AGGTGTCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
15 2 0.08
16 11 0.44
17 12 0.48
ACGTcount: A:0.80, C:0.04, G:0.09, T:0.07
Consensus pattern (16 bp):
AAAAGAAAACAAAAGA
Found at i:36736591 original size:23 final size:23
Alignment explanation
Indices: 36736565--36736611 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
36736555 TTAATGTTCG
*
36736565 TGAAAATGTTCGATTAAG-TTAAA
1 TGAAAATGTTC-ATGAAGATTAAA
*
36736588 TGAACATGTTCATGAAGATTAAA
1 TGAAAATGTTCATGAAGATTAAA
36736611 T
1 T
36736612 AAACGAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.34
Consensus pattern (23 bp):
TGAAAATGTTCATGAAGATTAAA
Found at i:36741658 original size:11 final size:12
Alignment explanation
Indices: 36741638--36741662 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36741628 TGGTAAGTTG
36741638 TTTTCTTTTTTT
1 TTTTCTTTTTTT
36741650 TTTTCTTTTTTT
1 TTTTCTTTTTTT
36741662 T
1 T
36741663 AATATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:36743456 original size:118 final size:118
Alignment explanation
Indices: 36743243--36743479 Score: 402
Period size: 118 Copynumber: 2.0 Consensus size: 118
36743233 ATGAAGACTA
* * *
36743243 AGTGTTGAAGGTAAGTTGGCAGAGTATAGGCAAGTATATTCAAGAGCTAGTCCTCACTTCATCGT
1 AGTGCTGAAGGTAAGTTGGCAAAGTATAGGCAAGTATATTCAAGAGCTAGTCCGCACTTCATCGT
* *
36743308 TTTAGGGGCTCTTTATAGGTGAGGTCCTGTGCAGAATAATATTAATGTGTTGG
66 TTTAGGGGCTCTTTATAGGTGAGGTCCTGTGCAAAATAATATTAATGTATTGG
* * *
36743361 AGTGCTGAAGGTAAGTTGGCAAAGTATAGGCAAGTATATTCAAGAGCTGGTCCGCTCTTCATTGT
1 AGTGCTGAAGGTAAGTTGGCAAAGTATAGGCAAGTATATTCAAGAGCTAGTCCGCACTTCATCGT
36743426 TTTAGGGGCTCTTTATAGGTGAGGTCCTGTGCAAAATAATATTAATGTATTGG
66 TTTAGGGGCTCTTTATAGGTGAGGTCCTGTGCAAAATAATATTAATGTATTGG
36743479 A
1 A
36743480 CTTGTAATCG
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 111 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (118 bp):
AGTGCTGAAGGTAAGTTGGCAAAGTATAGGCAAGTATATTCAAGAGCTAGTCCGCACTTCATCGT
TTTAGGGGCTCTTTATAGGTGAGGTCCTGTGCAAAATAATATTAATGTATTGG
Found at i:36745902 original size:171 final size:168
Alignment explanation
Indices: 36745672--36746132 Score: 631
Period size: 166 Copynumber: 2.7 Consensus size: 168
36745662 AAAAAAGTGC
* * * *
36745672 AAGTGACATGGAATTAAAGGATGAGTAGGGTTAGACAAAAGTACCATAAAGGTCCTTATATTAGG
1 AAGTGACATGGAATTAAAGGATG-GTAGGATTAGACAAAAGTACCATATAGGCCCTTATACTAGG
* * * * *
36745737 AATTAGATTGCATTTTGCCTCTTTTACTAAAAAAATAGGCAAATTAGTTCTTATTAAGTTAGATC
65 AATTAGATTACATTTTTCATCTTTTACTAAAAAAATAGGCAAATTAGTCCCTATTAAGTTAGATC
*
36745802 AAAGAGCAAACTCACCCTTTTGTTAGAAAAAAATTATGT
130 AAAGAGCAAACTCACCCTTTTGTTAAAAAAAAATTATGT
* * * *
36745841 AAGTGACATGGAATATTTTAAGGATGGTAGGATTACATAAAAGTACCGTATAGGCCCTTATACTA
1 AAGTGACATGG-A-A-TTAAAGGATGGTAGGATTAGACAAAAGTACCATATAGGCCCTTATACTA
*
36745906 GGAATTAGATTTCATTTTTCATCTTTTACTAAAAAAA-AGGCAAATTAGTCCCTA-TAAGTTAGA
63 GGAATTAGATTACATTTTTCATCTTTTACTAAAAAAATAGGCAAATTAGTCCCTATTAAGTTAGA
* * *
36745969 TCAAAGATCAAACTCGCCTTTTTGTTAAAAAAAAATTATGT
128 TCAAAGAGCAAACTCACCCTTTTGTTAAAAAAAAATTATGT
* * * * *
36746010 AAGTGACATGGAATTGAAGGATAGTAGAATTAGACAAAAGTAACATATAGGCCTTTATACTAGGA
1 AAGTGACATGGAATTAAAGGATGGTAGGATTAGACAAAAGTACCATATAGGCCCTTATACTAGGA
* * *
36746075 ATCAAATTACATTTTTCATCTTTTACT-AAAAAATAGTCAAATTAGTCCCTATTAAGTT
66 ATTAGATTACATTTTTCATCTTTTACTAAAAAAATAGGCAAATTAGTCCCTATTAAGTT
36746133 TCATTTATTT
Statistics
Matches: 258, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
165 6 0.02
166 84 0.33
167 7 0.03
168 1 0.00
169 68 0.26
170 16 0.06
171 67 0.26
172 9 0.03
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.32
Consensus pattern (168 bp):
AAGTGACATGGAATTAAAGGATGGTAGGATTAGACAAAAGTACCATATAGGCCCTTATACTAGGA
ATTAGATTACATTTTTCATCTTTTACTAAAAAAATAGGCAAATTAGTCCCTATTAAGTTAGATCA
AAGAGCAAACTCACCCTTTTGTTAAAAAAAAATTATGT
Found at i:36749866 original size:9 final size:9
Alignment explanation
Indices: 36749816--36749894 Score: 56
Period size: 10 Copynumber: 8.7 Consensus size: 9
36749806 AATCTTAAAT
36749816 ATTTTCTATA
1 ATTTT-TATA
36749826 ATTTTTAATA
1 ATTTTT-ATA
36749836 ATTTTTAT-
1 ATTTTTATA
**
36749844 ATTTTCCT-
1 ATTTTTATA
36749852 -TTTTTATA
1 ATTTTTATA
36749860 ATTTTTATTA
1 ATTTTTA-TA
* *
36749870 ATTATAATA
1 ATTTTTATA
*
36749879 ATATTTTATC
1 AT-TTTTATA
36749889 ATTTTT
1 ATTTTT
36749895 CGTCACATAT
Statistics
Matches: 55, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
7 5 0.09
8 6 0.11
9 17 0.31
10 27 0.49
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (9 bp):
ATTTTTATA
Found at i:36752001 original size:17 final size:18
Alignment explanation
Indices: 36751975--36752019 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
36751965 ATAAAATTTA
*
36751975 TTTATTAAAACAATA-AT
1 TTTATAAAAACAATATAT
36751992 TTTATAAAAA-AATATAT
1 TTTATAAAAACAATATAT
*
36752009 TTTTTAAAAAC
1 TTTATAAAAAC
36752020 CCACAGACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTATAAAAACAATATAT
Found at i:36755250 original size:24 final size:24
Alignment explanation
Indices: 36755217--36755278 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
36755207 TCGAAAAAGT
* * *
36755217 TGATAGTAATAGTGCGAGCTATGA
1 TGATAATAATAGTGCAAACTATGA
36755241 TGATAATAATAGTGCAAACTATGA
1 TGATAATAATAGTGCAAACTATGA
*
36755265 TGATAATGATAGTG
1 TGATAATAATAGTG
36755279 AACTTTGTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (24 bp):
TGATAATAATAGTGCAAACTATGA
Found at i:36756416 original size:12 final size:12
Alignment explanation
Indices: 36756401--36756432 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
36756391 TTAGAAGTAG
36756401 TTTTCTTCTTGA
1 TTTTCTTCTTGA
36756413 TTTTCTTCTTGA
1 TTTTCTTCTTGA
36756425 TTTTCTTC
1 TTTTCTTC
36756433 AAGGAGTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.19, G:0.06, T:0.69
Consensus pattern (12 bp):
TTTTCTTCTTGA
Found at i:36757340 original size:19 final size:18
Alignment explanation
Indices: 36757318--36757365 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
36757308 TTATTTATAA
*
36757318 GTATTTTTATAATTTTTAT
1 GTATTTTTATAATCTTT-T
*
36757337 GTATTTTATAAAATCTTTT
1 GTATTTT-TATAATCTTTT
36757356 GTATTTTTAT
1 GTATTTTTAT
36757366 TGAAAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 2 0.08
19 15 0.60
20 8 0.32
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (18 bp):
GTATTTTTATAATCTTTT
Found at i:36757989 original size:15 final size:14
Alignment explanation
Indices: 36757967--36758008 Score: 61
Period size: 15 Copynumber: 3.1 Consensus size: 14
36757957 AAGTGCATGT
36757967 AAAAGGAAAAGAAA
1 AAAAGGAAAAGAAA
36757981 AAGAAGGAAAA-AAA
1 AA-AAGGAAAAGAAA
36757995 AAAA-GAAAAGAAA
1 AAAAGGAAAAGAAA
36758008 A
1 A
36758009 GGTCAGATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 5 0.19
13 6 0.23
14 7 0.27
15 8 0.31
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAGGAAAAGAAA
Found at i:36761181 original size:45 final size:45
Alignment explanation
Indices: 36761098--36761266 Score: 164
Period size: 45 Copynumber: 3.7 Consensus size: 45
36761088 TCTCGTAGTT
* * *
36761098 GATGCATGTCCCAGACATGTCTTACATTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCCT-CGTCTCGAGGCC
* * * *
36761144 TATGCATGT-CCAGACATGTCTTACACTAACACTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTCGAGGCC
* * *
36761189 GATGCCATGTCCCAGACATGGTCTTACAC-AGGCTC-TCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCCTCGTC-T--CGAGGCC
36761237 GATGCATGTCCCAGACATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
36761267 TTTATACGAG
Statistics
Matches: 101, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
45 33 0.33
46 27 0.27
47 25 0.25
48 16 0.16
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCTCGTCTCGAGGCC
Found at i:36764065 original size:40 final size:40
Alignment explanation
Indices: 36764009--36764256 Score: 415
Period size: 40 Copynumber: 6.2 Consensus size: 40
36763999 GCTATTTACC
*
36764009 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
*
36764049 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGGCT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
* *
36764089 TAGCCCAGATACATCACTAGCACGAATGCTCTTCGGGGCT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
*
36764129 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
* * *
36764169 TAGCCCGGATACATCACTAGAACGAATGCTCTTTGGGGCT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
*
36764209 TAGCCTGGATACATCACTAGCACGAATGCTCTTCGGGACT
1 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
36764249 TAGCCCGG
1 TAGCCCGG
36764257 GTATACCACT
Statistics
Matches: 193, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 193 1.00
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACT
Found at i:36765583 original size:37 final size:37
Alignment explanation
Indices: 36765533--36765682 Score: 246
Period size: 37 Copynumber: 4.1 Consensus size: 37
36765523 CTTTAGCTCA
* *
36765533 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
36765570 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* * *
36765607 GACATAATCTTCACACGTAGTCATCAGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
36765644 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
36765681 GA
1 GA
36765683 ATATATTTCC
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:36765948 original size:47 final size:47
Alignment explanation
Indices: 36765887--36766071 Score: 280
Period size: 47 Copynumber: 3.9 Consensus size: 47
36765877 TACATATATT
* * *
36765887 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
36765934 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
36765981 TCACATTAGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
36766028 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACAT
36766072 CACAATTATC
Statistics
Matches: 124, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 124 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:36766007 original size:22 final size:22
Alignment explanation
Indices: 36765980--36766055 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
36765970 GCTCACATTC
36765980 ATCACATTAGCCATTTGGCCTT
1 ATCACATTAGCCATTTGGCCTT
** *
36766002 ATCACATATATG-CATGTTCACATT
1 ATCACAT-TA-GCCAT-TTGGCCTT
* *
36766026 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTAGCCATTTGGCCTT
36766049 ATCACAT
1 ATCACAT
36766056 ATATGCACAT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 14 0.34
23 10 0.24
24 10 0.24
25 7 0.17
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTAGCCATTTGGCCTT
Found at i:36769213 original size:30 final size:30
Alignment explanation
Indices: 36769173--36769230 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
36769163 AATTCATATA
* *
36769173 TTTGGTAAAATGACCCTTTTGCCCCTAGAC
1 TTTGATAAAATGACCCTTTTACCCCTAGAC
36769203 TTTGATAAAATGACCCTTTTACCCCTAG
1 TTTGATAAAATGACCCTTTTACCCCTAG
36769231 GCCCGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (30 bp):
TTTGATAAAATGACCCTTTTACCCCTAGAC
Found at i:36772930 original size:222 final size:222
Alignment explanation
Indices: 36772537--36772976 Score: 756
Period size: 222 Copynumber: 2.0 Consensus size: 222
36772527 TATACTTTCT
* *
36772537 ATTCCTAGTATAATTTCATTGTAGATTTTGAATTTATTCAGTTTAGTTCCTAATGTTACAAAGTT
1 ATTCCTAGTATAATTTCATTGCAGATTTTGAATTTATTCAATTTAGTTCCTAATGTTACAAAGTT
* * *
36772602 ATCTATCAAGCTTATTTGGCTTTACAATTTAATTTTTATCATGATCTAAGCTTAATTTCTATAAA
66 ATCTATCAAGCTTATGTAGCTTTACAATTTAATTCTTATCATGATCTAAGCTTAATTTCTATAAA
36772667 TTGCAAGCCTAATTCATCAATTTCTCAACAATGAAAACTTGCTAAAAATTCAACAATTGAACAAA
131 TTGCAAGCCTAATTCATCAATTTCTCAACAATGAAAACTTGCTAAAAATTCAACAATTGAACAAA
*
36772732 TTAATACAT-GGTCTAGCTAAATCAAGC
196 TTAACACATAGG-CTAGCTAAATCAAGC
*
36772759 ATTCCTAGTATAATTTCATTGCAGATTTTGAATTTATTCAATTTAGTTCCTAATGTTAGAAAGTT
1 ATTCCTAGTATAATTTCATTGCAGATTTTGAATTTATTCAATTTAGTTCCTAATGTTACAAAGTT
* *
36772824 ATCTATCAAGCTTATGTAGCTTTACAATTTAGTTCTTATCTTGATCTAAGCTTAATTTCTATAAA
66 ATCTATCAAGCTTATGTAGCTTTACAATTTAATTCTTATCATGATCTAAGCTTAATTTCTATAAA
* *
36772889 TTGCAAGCCTAATTCATCAATTTTTCAACAATGACAACTTGCTAAAAATTCAACAATTGAACAAA
131 TTGCAAGCCTAATTCATCAATTTCTCAACAATGAAAACTTGCTAAAAATTCAACAATTGAACAAA
*
36772954 TTAACCCATAGGCTAGCTAAATC
196 TTAACACATAGGCTAGCTAAATC
36772977 TGTGACACCC
Statistics
Matches: 205, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
222 203 0.99
223 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (222 bp):
ATTCCTAGTATAATTTCATTGCAGATTTTGAATTTATTCAATTTAGTTCCTAATGTTACAAAGTT
ATCTATCAAGCTTATGTAGCTTTACAATTTAATTCTTATCATGATCTAAGCTTAATTTCTATAAA
TTGCAAGCCTAATTCATCAATTTCTCAACAATGAAAACTTGCTAAAAATTCAACAATTGAACAAA
TTAACACATAGGCTAGCTAAATCAAGC
Found at i:36775472 original size:37 final size:37
Alignment explanation
Indices: 36775416--36775494 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36775406 CTGAGCTCTA
* *
36775416 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
36775453 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36775490 AAGAC
1 AAGAC
36775495 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36777416 original size:43 final size:43
Alignment explanation
Indices: 36777362--36777460 Score: 180
Period size: 43 Copynumber: 2.3 Consensus size: 43
36777352 TTGGTTTTTA
*
36777362 GCACTATGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
36777405 GCACTTAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
36777448 GCACTAAGTGTGC
1 GCACTAAGTGTGC
36777461 ACTAAGTGTG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.21, C:0.15, G:0.34, T:0.29
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:36777455 original size:28 final size:28
Alignment explanation
Indices: 36777419--36777512 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 28
36777409 TTAGTGTGCG
36777419 GGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCAATAAGTGTTCACGGTTGTGAGATT
* * * *
36777447 GGCACTAAGTGTGCACTAAG-TGTGCG---
1 GGCAATAAGTGTTCAC--GGTTGTGAGATT
36777473 GGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCAATAAGTGTTCACGGTTGTGAGATT
*
36777501 GGCACTAAGTGT
1 GGCAATAAGTGT
36777513 GCGGGCTTGA
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
24 1 0.02
25 5 0.10
26 14 0.27
28 25 0.49
29 5 0.10
30 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (28 bp):
GGCAATAAGTGTTCACGGTTGTGAGATT
Found at i:36777487 original size:54 final size:54
Alignment explanation
Indices: 36777405--36777514 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
36777395 TGTGAGATTG
*
36777405 GCACTTAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
36777459 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
36777513 GC
1 GC
36777515 GGGCTTGAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.23, C:0.15, G:0.34, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTGGCACTAAGTGT
Found at i:36777535 original size:29 final size:29
Alignment explanation
Indices: 36777500--36777573 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
36777490 GTTGTGAGAT
* *
36777500 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
36777529 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
36777558 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36777574 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:36778009 original size:40 final size:40
Alignment explanation
Indices: 36777889--36778120 Score: 211
Period size: 40 Copynumber: 5.8 Consensus size: 40
36777879 AATGATGTCT
** *
36777889 GGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCC
* * ** * * *
36777929 GGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATATCC
*
36777969 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCC
* *
36778009 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCC
* * * * * *
36778049 GTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATGTCC
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCC
* * *
36778088 GGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
36778121 CGTGTATTCG
Statistics
Matches: 159, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
39 32 0.20
40 109 0.69
41 18 0.11
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCC
Found at i:36781352 original size:47 final size:47
Alignment explanation
Indices: 36781291--36781403 Score: 208
Period size: 47 Copynumber: 2.4 Consensus size: 47
36781281 CAGCCAAGAC
36781291 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36781338 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36781385 ATTGTATATATGTGATAAG
1 AGTGTATATATGTGATAAG
36781404 TCCCGAAGGG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.32, C:0.07, G:0.29, T:0.32
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:36781578 original size:37 final size:37
Alignment explanation
Indices: 36781522--36781600 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
36781512 CCGAGCTCTA
* * *
36781522 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCTGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
36781559 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36781596 AAGAC
1 AAGAC
36781601 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36783315 original size:15 final size:15
Alignment explanation
Indices: 36783295--36783324 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36783285 CATTTTAACC
36783295 CTTTGGATGATTGCT
1 CTTTGGATGATTGCT
36783310 CTTTGGATGATTGCT
1 CTTTGGATGATTGCT
36783325 ATATAGGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.27, T:0.47
Consensus pattern (15 bp):
CTTTGGATGATTGCT
Found at i:36783676 original size:15 final size:16
Alignment explanation
Indices: 36783637--36783681 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
36783627 ATTTTTGCAA
36783637 TTTA-AAAATTAT-TT
1 TTTATAAAATTATATT
36783651 TTTAATAAAATTATATT
1 TTT-ATAAAATTATATT
*
36783668 TTT-TAAAATAATAT
1 TTTATAAAATTATAT
36783682 ATATCCATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 3 0.11
15 11 0.41
16 8 0.30
17 5 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTATAAAATTATATT
Found at i:36796679 original size:40 final size:40
Alignment explanation
Indices: 36796634--36796778 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
36796624 CTCGCACAAG
* * * * *
36796634 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
36796674 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
36796714 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
36796755 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
36796779 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.65
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:36799811 original size:27 final size:27
Alignment explanation
Indices: 36799781--36799835 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
36799771 AGTGTTTTCT
*
36799781 CATAGCTTCCTCGAGTTCCCATGTAGC
1 CATAGCTTCCTCGAGTCCCCATGTAGC
36799808 CATAGCTTCCTCGAGTCCCCATGTAGC
1 CATAGCTTCCTCGAGTCCCCATGTAGC
36799835 C
1 C
36799836 TCTGCAACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.18, C:0.36, G:0.18, T:0.27
Consensus pattern (27 bp):
CATAGCTTCCTCGAGTCCCCATGTAGC
Found at i:36803511 original size:16 final size:16
Alignment explanation
Indices: 36803469--36803511 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
36803459 GTAGATCGGC
*
36803469 AAAAGCTGAAATGCCG
1 AAAAGCAGAAATGCCG
*
36803485 AAAATCAGAAATGCCG
1 AAAAGCAGAAATGCCG
*
36803501 AAAAGCCGAAA
1 AAAAGCAGAAA
36803512 GTTTGGCTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAGCAGAAATGCCG
Found at i:36803764 original size:29 final size:29
Alignment explanation
Indices: 36803730--36803815 Score: 145
Period size: 29 Copynumber: 3.0 Consensus size: 29
36803720 TGAATATATT
36803730 GTGATTTGGGCCTAACGGGCCATATAAAG
1 GTGATTTGGGCCTAACGGGCCATATAAAG
*
36803759 GTGATTTGGGCCTAACAGGCCATATAAAG
1 GTGATTTGGGCCTAACGGGCCATATAAAG
* *
36803788 GTGAATTGGGCCTAATGGGCCATATAAA
1 GTGATTTGGGCCTAACGGGCCATATAAA
36803816 TGAGATTGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.24
Consensus pattern (29 bp):
GTGATTTGGGCCTAACGGGCCATATAAAG
Found at i:36803834 original size:28 final size:28
Alignment explanation
Indices: 36803730--36803840 Score: 118
Period size: 29 Copynumber: 3.9 Consensus size: 28
36803720 TGAATATATT
* *
36803730 GTGATTTGGGCCTAACGGGCCATATAAA
1 GTGAATTGGGCCTAATGGGCCATATAAA
* **
36803758 GGTGATTTGGGCCTAACAGGCCATATAAA
1 -GTGAATTGGGCCTAATGGGCCATATAAA
36803787 GGTGAATTGGGCCTAATGGGCCATATAAA
1 -GTGAATTGGGCCTAATGGGCCATATAAA
*
36803816 -TGAGATTGGGCC-AAGTGGGCTATAT
1 GTGA-ATTGGGCCTAA-TGGGCCATAT
36803841 GCATGTATAT
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.07
28 17 0.23
29 53 0.71
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (28 bp):
GTGAATTGGGCCTAATGGGCCATATAAA
Found at i:36808389 original size:40 final size:40
Alignment explanation
Indices: 36808332--36808576 Score: 307
Period size: 40 Copynumber: 6.2 Consensus size: 40
36808322 GGACTAAGAT
* *
36808332 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
* * * *
36808372 CCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTC
*
36808412 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
* * * * *
36808452 CCAAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGAC
1 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTC
*
36808492 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGGC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
* * *
36808532 CCGAGGGCATTTGTGCGAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
36808571 CCGAAG
1 CCGAAG
36808577 ATACTTGTGA
Statistics
Matches: 176, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
39 16 0.09
40 156 0.89
41 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTC
Found at i:36808459 original size:80 final size:80
Alignment explanation
Indices: 36808320--36808576 Score: 394
Period size: 80 Copynumber: 3.2 Consensus size: 80
36808310 CGGATGATAA
* * *
36808320 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
36808385 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
*
36808400 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCAAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
36808465 TGCTAGTGATTATAT
66 TGCTAGTGATTATAT
* * * *
36808480 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGGCCCGAGGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
*
36808545 TGCGAGTTG-TTATAT
66 TGCTAG-TGATTATAT
36808560 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
36808577 ATACTTGTGA
Statistics
Matches: 165, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 13 0.08
80 149 0.90
81 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
TGCTAGTGATTATAT
Found at i:36811164 original size:143 final size:138
Alignment explanation
Indices: 36811052--36811711 Score: 840
Period size: 143 Copynumber: 4.6 Consensus size: 138
36811042 ATTTAGGATT
*
36811052 TGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 TGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
* * *
36811117 AAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTGTGTATAT
64 AAAGTG----TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGGTCTATATAT
36811181 GTGATAAGGCCGAATGGC
125 GTGATAAGG-C--AT-GC
** * *
36811199 CAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTG
1 TGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
36811264 AAAGTGTATATATGTGATAAGGCCGAATGGCC-ACTGTGATGAATGTGAAAGTGTCTATATATGT
64 AAAGTGTATATATGTGATAAGGCCGAATGGCCGA-TGTGATGAATGTGAAAG-GTCTATATATGT
36811328 GATAAGGCCTAATGGC
127 GATAAGG-C--AT-GC
* *
36811344 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAA
1 TGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
36811409 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTCTATATATGTGAT
66 AGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAG-GTCTATATATGTGAT
36811474 AAGGCCTAATGGC
130 AAGG-C--AT-GC
*
36811487 TGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAA
1 TGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
36811552 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTGTATATATGTGATA
66 AGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGGTCTATATATGTGATA
36811616 AGGCCTAATGGC
131 AGG-C--AT-GC
* * * * * * * * *
36811628 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 TGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
36811693 AGTGTATAAATGTGATAAG
66 AGTGTATATATGTGATAAG
36811712 TCCCGAAGGG
Statistics
Matches: 483, Mismatches: 26, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
141 100 0.21
142 1 0.00
143 267 0.55
144 1 0.00
145 46 0.10
147 68 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (138 bp):
TGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGGTCTATATATGTGATA
AGGCATGC
Found at i:36811198 original size:47 final size:47
Alignment explanation
Indices: 36811053--36811711 Score: 1014
Period size: 47 Copynumber: 13.8 Consensus size: 47
36811043 TTTAGGATTT
36811053 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
36811102 GATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCC
* *
36811153 GATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
36811200 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
* *
36811249 GATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
36811296 -ACTGTGATGAATGTGAAAGTGTCTATATATGTGATAAGGCCTAATGGCC
1 GA-TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
* *
36811345 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*
36811392 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* *
36811439 AATGTGATGAATGTGAAAGTGTCTATATATGTGATAAGGCCTAATGGCT
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
* *
36811488 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
36811535 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
36811582 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
36811629 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * * *
36811676 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36811712 TCCCGAAGGG
Statistics
Matches: 566, Mismatches: 34, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
46 1 0.00
47 363 0.64
49 152 0.27
50 1 0.00
51 49 0.09
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:36811276 original size:96 final size:95
Alignment explanation
Indices: 36811053--36811711 Score: 1013
Period size: 96 Copynumber: 6.9 Consensus size: 95
36811043 TTTAGGATTT
36811053 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
36811118 AAGTGTATATATATATGTGATAAGGCCTAATGGCC
64 AAGTG--T-TATATATGTGATAAGGCCTAATGGCC
* * *
36811153 GATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
36811218 GTGTATATATATGTGATAAGGCCTAATGGCC
66 GTGT-TATATATGTGATAAGGCCTAATGGCC
* *
36811249 GATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ACTGTGATGAATGTGAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAA
36811313 AGTGTCTATATATGTGATAAGGCCTAATGGCC
65 AGTGT-TATATATGTGATAAGGCCTAATGGCC
* *
36811345 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
36811410 GTG-TATATATGTGATAAGGCCGAATGGCC
66 GTGTTATATATGTGATAAGGCCTAATGGCC
* *
36811439 AATGTGATGAATGTGAAAGTGTCTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
* *
36811504 AAGTG-TATATATGTGATAAGGCCTAATAGTC
64 AAGTGTTATATATGTGATAAGGCCTAATGGCC
36811535 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
36811600 GTG-TATATATGTGATAAGGCCTAATGGCC
66 GTGTTATATATGTGATAAGGCCTAATGGCC
* * * * * * *
36811629 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
36811694 GTG-TATAAATGTGATAAG
66 GTGTTATATATGTGATAAG
36811712 TCCCGAAGGG
Statistics
Matches: 525, Mismatches: 30, Indels: 14
0.92 0.05 0.02
Matches are distributed among these distances:
94 190 0.36
95 1 0.00
96 268 0.51
97 1 0.00
98 44 0.08
100 21 0.04
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (95 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTTATATATGTGATAAGGCCTAATGGCC
Found at i:36811880 original size:37 final size:37
Alignment explanation
Indices: 36811830--36811930 Score: 193
Period size: 37 Copynumber: 2.7 Consensus size: 37
36811820 CCGAGCTCTA
36811830 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
36811867 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
36811904 AAGACCCGATGACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
36811931 TCGTCTGAGC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:36819391 original size:29 final size:29
Alignment explanation
Indices: 36819350--36819413 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
36819340 GTGAGCATGA
*
36819350 ATAT-AAGGTGATTTGGGCCTAACGGGCT
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
*
36819378 ATATAAAGGTGATTTGGGCCTAATGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
36819407 ATATAAA
1 ATATAAA
36819414 TGAGATTGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.28
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACGGGCC
Found at i:36819420 original size:29 final size:29
Alignment explanation
Indices: 36819350--36819439 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 29
36819340 GTGAGCATGA
* * *
36819350 ATAT-AAGGTGATTTGGGCCTAACGGGCT
1 ATATAAAGGAGATTTGGGCCTAATGGGCC
*
36819378 ATATAAAGGTGATTTGGGCCTAATGGGCC
1 ATATAAAGGAGATTTGGGCCTAATGGGCC
* *
36819407 ATATAAATGAGA-TTGGACC-AAGTGGGCC
1 ATATAAAGGAGATTTGGGCCTAA-TGGGCC
36819435 ATATA
1 ATATA
36819440 CATGTATGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 2 0.04
28 21 0.38
29 32 0.58
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (29 bp):
ATATAAAGGAGATTTGGGCCTAATGGGCC
Found at i:36822586 original size:45 final size:45
Alignment explanation
Indices: 36822534--36822620 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
36822524 TATGTGATCT
* * *
36822534 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTAAGTTGTGATCTGAGTTCATGATATATATGACATCC
* *
36822579 GAACTCATTAAGTTGTGATTTGAGTTCGTGATATATATGACA
1 GAACTCATTAAGTTGTGATCTGAGTTCATGATATATATGACA
36822621 CATGTTTTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.37
Consensus pattern (45 bp):
GAACTCATTAAGTTGTGATCTGAGTTCATGATATATATGACATCC
Found at i:36834395 original size:26 final size:29
Alignment explanation
Indices: 36834340--36834405 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 29
36834330 TTATTTTCAC
36834340 TTTTATCTTTATTTATCTTCTTTAAGTATTT
1 TTTTAT-TTTATTTATC-TCTTTAAGTATTT
36834371 TTTTATTTTATTT-TC-CTTTAA-TATTT
1 TTTTATTTTATTTATCTCTTTAAGTATTT
*
36834397 TTTCATTTT
1 TTTTATTTT
36834406 TAGGTTTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
26 13 0.38
27 6 0.18
29 2 0.06
30 7 0.21
31 6 0.18
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.71
Consensus pattern (29 bp):
TTTTATTTTATTTATCTCTTTAAGTATTT
Found at i:36842546 original size:96 final size:96
Alignment explanation
Indices: 36842384--36843035 Score: 1191
Period size: 96 Copynumber: 6.8 Consensus size: 96
36842374 CCCTTCGGGA
* * * * *
36842384 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36842447 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
36842478 CTTATCACATATATATACACTTTCACATTCATCTCATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36842543 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36842574 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36842639 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36842670 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
36842735 ACTTTCACATTCATCACATCGACCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36842766 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36842831 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36842862 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36842927 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
36842958 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
36843023 ACACTTTCACATT
64 ACACTTTCACATT
36843036 TATTCAAATA
Statistics
Matches: 543, Mismatches: 11, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
94 10 0.02
95 1 0.00
96 513 0.94
98 19 0.03
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36846665 original size:29 final size:28
Alignment explanation
Indices: 36846629--36846706 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
36846619 TCATGAGATT
36846629 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
36846659 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
36846686 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
36846707 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:36846982 original size:173 final size:173
Alignment explanation
Indices: 36846659--36846984 Score: 546
Period size: 173 Copynumber: 1.9 Consensus size: 173
36846649 AAATTGTACA
* *
36846659 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTACTAAACACTATG
* *
36846724 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
*
36846789 TTTTGGACAGCGAGAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
36846832 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTACTAAACACTATG
* *
36846897 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACTGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
36846961 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGC-GAAAAGGTAAGT
36846985 ACCTTGAGTT
Statistics
Matches: 142, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
172 66 0.46
173 76 0.54
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.32
Consensus pattern (173 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:36849898 original size:47 final size:47
Alignment explanation
Indices: 36849842--36849990 Score: 166
Period size: 47 Copynumber: 3.3 Consensus size: 47
36849832 ATAGTCCAAC
36849842 CATGGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGA
1 CATGGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGA
* * * * * * * *
36849889 CATGGTCTTAC--A-CA--ACATCTCAAATCAATGCCTTCATCCCAGA
1 CATGGTCTTACATATTATCACATATCGAGTCGATGCCAT-GTCCTAGA
36849932 CGA-GGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGA
1 C-ATGGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGA
36849979 CATGGTCTTACA
1 CATGGTCTTACA
36849991 CAACATCTCA
Statistics
Matches: 78, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
42 15 0.19
43 15 0.19
44 2 0.03
45 2 0.03
46 2 0.03
47 27 0.35
48 15 0.19
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (47 bp):
CATGGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGA
Found at i:36849998 original size:90 final size:90
Alignment explanation
Indices: 36849845--36850034 Score: 380
Period size: 90 Copynumber: 2.1 Consensus size: 90
36849835 GTCCAACCAT
36849845 GGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGACATGGTCTTACACAACATCTC
1 GGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGACATGGTCTTACACAACATCTC
36849910 AAATCAATGCCTTCATCCCAGACGA
66 AAATCAATGCCTTCATCCCAGACGA
36849935 GGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGACATGGTCTTACACAACATCTC
1 GGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGACATGGTCTTACACAACATCTC
36850000 AAATCAATGCCTTCATCCCAGACGA
66 AAATCAATGCCTTCATCCCAGACGA
36850025 GGTCTTACAT
1 GGTCTTACAT
36850035 GAATCTCATT
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 100 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (90 bp):
GGTCTTACATATTATCACATATCGAGTCGATGCCATGTCCTAGACATGGTCTTACACAACATCTC
AAATCAATGCCTTCATCCCAGACGA
Found at i:36850030 original size:43 final size:43
Alignment explanation
Indices: 36849892--36850033 Score: 144
Period size: 43 Copynumber: 3.2 Consensus size: 43
36849882 TCCTAGACAT
36849892 GGTCTTACACAACATCTCAAATCAATGCCTTCATCCCAGACGA
1 GGTCTTACACAACATCTCAAATCAATGCCTTCATCCCAGACGA
* * * * * * * *
36849935 GGTCTTACATATTATCACATATCGAGTCGATGCCAT-GTCCTAGAC-A
1 GGTCTTAC--A-CA--ACATCTCAAATCAATGCCTTCATCCCAGACGA
36849981 TGGTCTTACACAACATCTCAAATCAATGCCTTCATCCCAGACGA
1 -GGTCTTACACAACATCTCAAATCAATGCCTTCATCCCAGACGA
36850025 GGTCTTACA
1 GGTCTTACA
36850034 TGAATCTCAT
Statistics
Matches: 75, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
42 15 0.20
43 24 0.32
44 2 0.03
45 2 0.03
46 2 0.03
47 15 0.20
48 15 0.20
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (43 bp):
GGTCTTACACAACATCTCAAATCAATGCCTTCATCCCAGACGA
Found at i:36850145 original size:57 final size:58
Alignment explanation
Indices: 36850068--36850176 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
36850058 GCCCACTGAT
* *
36850068 CGATCTCGCCCACATAGTGCTAGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTAGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * * *
36850125 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTAGGTTAAAAGAACTCGCACACACAGTGCCTC
36850177 TAATGATTCG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTAGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:36850739 original size:40 final size:40
Alignment explanation
Indices: 36850388--36850726 Score: 507
Period size: 40 Copynumber: 8.5 Consensus size: 40
36850378 CCAGCATGAT
* * *
36850388 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
36850428 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
36850468 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36850508 TGCTCTTCGGGACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
36850548 TGCTCCTCGGGACTTAGCCCGGATTTATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
36850588 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36850628 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
36850668 TGCTCTTCGGAACTTAGTTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36850708 TGCTCTTCGGGATTTAGCC
1 TGCTCTTCGGGACTTAGCC
36850727 TGGACATTTC
Statistics
Matches: 266, Mismatches: 33, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 266 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:36852353 original size:96 final size:96
Alignment explanation
Indices: 36852191--36852842 Score: 1155
Period size: 96 Copynumber: 6.8 Consensus size: 96
36852181 CCCTTCGGGA
* * * * * *
36852191 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCTACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36852254 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36852285 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
36852350 ACTTTCACATTCATCACATCGGCCATTTGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
36852381 CCTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36852446 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
36852477 CTTATCACATATATATACACTTTCACGTTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36852542 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36852573 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
36852638 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36852669 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
36852734 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
** *
36852765 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
36852830 ACACTTTCACATT
64 ACACTTTCACATT
36852843 TATTCAAATA
Statistics
Matches: 538, Mismatches: 16, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
94 10 0.02
95 1 0.00
96 508 0.94
98 19 0.04
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36854202 original size:40 final size:40
Alignment explanation
Indices: 36854124--36854307 Score: 221
Period size: 40 Copynumber: 4.5 Consensus size: 40
36854114 ACCCAAGTAT
* * *
36854124 CTTCGGGATTTAG-CTGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
36854163 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
36854203 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36854243 CTTCGGGACTTAGCCTGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
*
36854286 CTTCGGGACTTACCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
36854308 CATCCGAATA
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 12 0.10
40 83 0.66
41 1 0.01
43 29 0.23
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:36864463 original size:67 final size:63
Alignment explanation
Indices: 36864317--36864463 Score: 154
Period size: 67 Copynumber: 2.3 Consensus size: 63
36864307 ATATAGTTCG
* * * *
36864317 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACTTAGAACCACCCATGCGACCTAGCCAGTATATCCCGTA
** * *
36864380 GCTCTCTTGT-CTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACA-TATATCC
1 GCTCTCTTGTAC-ACATGGTG---AACACTTAGAACCACCCATGCGACCTAGC--CAGTATATCC
36864443 CGTA
60 CGTA
36864447 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
36864464 ATGTGCACTC
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.26
66 23 0.33
67 24 0.35
68 3 0.04
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.31
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACTTAGAACCACCCATGCGACCTAGCCAGTATATCCCGTA
Found at i:36865201 original size:30 final size:30
Alignment explanation
Indices: 36865167--36865227 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36865157 TCCTTAACTC
36865167 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36865197 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36865227 A
1 A
36865228 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36870095 original size:40 final size:40
Alignment explanation
Indices: 36870043--36870396 Score: 573
Period size: 40 Copynumber: 8.8 Consensus size: 40
36870033 ATAACCACAA
* * * *
36870043 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
36870083 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
36870123 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
36870163 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
*
36870205 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
36870245 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
*
36870287 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
36870327 GCACAACTGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
36870367 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
36870397 GTATTCAAAT
Statistics
Matches: 295, Mismatches: 15, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
40 216 0.73
42 79 0.27
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:36870234 original size:122 final size:122
Alignment explanation
Indices: 36870043--36870396 Score: 606
Period size: 122 Copynumber: 2.9 Consensus size: 122
36870033 ATAACCACAA
* * * *
36870043 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAG-CAACTCGCACGAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAACTCGCACAAATGCCTTCGGGTCTTAGC
*
36870107 CCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATA-TCAACTC
66 CCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAACTC
36870163 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-GTCAACTCGCACAAATGCCTTCGGGTCTTAG
36870228 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
65 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATA-GTCAACTC
* *
36870287 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-TCAACTTGCACAACTGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAACTCGCACAAATGCCTTCGGGTCTTAGC
36870351 CCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
66 CCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
36870397 GTATTCAAAT
Statistics
Matches: 223, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
120 30 0.13
121 1 0.00
122 152 0.68
124 40 0.18
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAACTCGCACAAATGCCTTCGGGTCTTAGC
CCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAACTC
Found at i:36870238 original size:82 final size:80
Alignment explanation
Indices: 36870043--36870396 Score: 573
Period size: 82 Copynumber: 4.4 Consensus size: 80
36870033 ATAACCACAA
* * * * *
36870043 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
36870108 CGGATATATCAACTT
66 CGGATATATCAACTC
*
36870123 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
36870188 CGGATATATGTCAACTC
66 CGGATATA--TCAACTC
*
36870205 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
36870270 CGGATATATGTCAACTC
66 CGGATATA--TCAACTC
* *
36870287 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAACTGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
36870352 CGGATATATCAACTT
66 CGGATATATCAACTC
36870367 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
36870397 GTATTCAAAT
Statistics
Matches: 263, Mismatches: 9, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
80 105 0.40
82 158 0.60
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTC
Found at i:36874666 original size:25 final size:25
Alignment explanation
Indices: 36874638--36874690 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
36874628 CTCAACCAGC
36874638 CAATTCAAAGTCCA-TTCAAACACCT
1 CAATT-AAAGTCCACTTCAAACACCT
**
36874663 CAATTTTAGTCCACTTCAAACACCT
1 CAATTAAAGTCCACTTCAAACACCT
36874688 CAA
1 CAA
36874691 AATAATATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.38, C:0.32, G:0.04, T:0.26
Consensus pattern (25 bp):
CAATTAAAGTCCACTTCAAACACCT
Found at i:36877513 original size:47 final size:47
Alignment explanation
Indices: 36877461--36877621 Score: 216
Period size: 47 Copynumber: 3.3 Consensus size: 47
36877451 TTAGGATTTT
*
36877461 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGGATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
36877508 CTGTGATGGATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGGATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* **
36877555 ATGTGAT-TATTGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGGA-TGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
36877606 ATGTGATGAATGTGAA
1 ATGTGATGGATGTGAA
36877622 TGTGACAGCC
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
46 1 0.01
47 57 0.56
49 1 0.01
51 41 0.41
52 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGGATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:36879244 original size:29 final size:28
Alignment explanation
Indices: 36879209--36879286 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
36879199 TCATGAGATT
36879209 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
36879239 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
36879266 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
36879287 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:36879554 original size:173 final size:174
Alignment explanation
Indices: 36879239--36879565 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
36879229 AAATTGTACA
* *
36879239 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
36879304 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
36879369 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
36879413 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
36879478 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
36879542 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
36879566 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:36881106 original size:47 final size:47
Alignment explanation
Indices: 36880984--36881263 Score: 380
Period size: 47 Copynumber: 5.8 Consensus size: 47
36880974 GGGTGTTACA
*
36880984 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
** *
36881031 GTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 GTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* *
36881084 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAC
1 GTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
36881131 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
36881178 GTGAACATGCATATATGAGATAAGGCCGAGTGGCCAATGTGATGAAT
1 GTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * * *
36881225 GTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 GTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
36881264 CGAAACGTGC
Statistics
Matches: 208, Mismatches: 19, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
47 164 0.79
48 1 0.00
52 1 0.00
53 42 0.20
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.25
Consensus pattern (47 bp):
GTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
Found at i:36881324 original size:46 final size:46
Alignment explanation
Indices: 36881237--36881327 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
36881227 GAACATGAAT
* * *
36881237 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGCATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGCATGAGATGG
* * * *
36881283 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGCATGAGATG
36881328 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGCATGAGATGG
Found at i:36881334 original size:141 final size:140
Alignment explanation
Indices: 36880984--36881312 Score: 387
Period size: 141 Copynumber: 2.3 Consensus size: 140
36880974 GGGTGTTACA
* * **
36880984 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATAT
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAA-C---ATGCATAT
* ** *
36881049 ATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAA
62 AT--GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAA
*
36881114 TGGCCAATGTGATGAAC
125 TGGCCAATGCGA-GAAC
* *
36881131 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGA
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
* * *
36881196 GATAAGGCCGAGTGGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
66 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
36881261 ATGCGA-AAC
131 ATGCGAGAAC
* *
36881270 GTGCATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
1 GTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
36881313 GATATGTATG
Statistics
Matches: 164, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
139 6 0.04
140 20 0.12
141 67 0.41
142 10 0.06
143 8 0.05
146 1 0.01
147 52 0.32
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (140 bp):
GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
ATGCGAGAAC
Found at i:36881573 original size:37 final size:37
Alignment explanation
Indices: 36881471--36881579 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
36881461 GGAAATATAT
* *
36881471 TCCGGGTAAGACCCGATGACTACGTCTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
36881508 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
36881545 TCCGGGTAAGACCTGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
36881580 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:36889716 original size:16 final size:16
Alignment explanation
Indices: 36889697--36889727 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36889687 CTTCTTCACT
36889697 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
36889713 TACTTACTTACTTAA
1 TACTCACTTACTTAA
36889728 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:36889733 original size:20 final size:20
Alignment explanation
Indices: 36889694--36889733 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
36889684 AAACTTCTTC
* *
36889694 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
36889714 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
36889734 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:36890109 original size:55 final size:53
Alignment explanation
Indices: 36889919--36890173 Score: 225
Period size: 55 Copynumber: 4.8 Consensus size: 53
36889909 ACGCGGGTAC
* * * * * *
36889919 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGTATCCTT-TC-GA--AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * *
36889968 CTTACCATTGCCATGTGTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
* * * *
36890021 CTGACCAATGCCATGCCTTGGCTTGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AA
* * ***
36890076 CTTATCAATGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA
* * *
36890129 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
36890174 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
49 40 0.24
50 1 0.01
51 1 0.01
52 2 0.01
53 45 0.27
54 8 0.05
55 69 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAA
Found at i:36890110 original size:108 final size:110
Alignment explanation
Indices: 36889966--36890166 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
36889956 ATCCTTTCGA
* * * *
36889966 AACTTACCATTGCCATGTGTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTGACCAA
1 AACTTACCAATGCCATGTCTTGACATGATCTTACATGATATCCTTGCCTTA-GAAACCTGACCAA
*
36890029 -TGCCATGCCTTGGCTTGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
36890074 AACTTATCAATGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGATCTTACATGATATCCTTGCCTTAGAAACCTGACCAAT
36890139 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
36890167 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.57
109 7 0.09
110 27 0.33
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGATCTTACATGATATCCTTGCCTTAGAAACCTGACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:36891421 original size:21 final size:21
Alignment explanation
Indices: 36891395--36891444 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
36891385 AACAACACGA
36891395 GCGTGTCCCAGGGTCACATGG
1 GCGTGTCCCAGGGTCACATGG
*
36891416 GCGTGTCACAGGGTCACATGG
1 GCGTGTCCCAGGGTCACATGG
36891437 GCGTGTCC
1 GCGTGTCC
36891445 GTTGGACCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.14, C:0.28, G:0.38, T:0.20
Consensus pattern (21 bp):
GCGTGTCCCAGGGTCACATGG
Found at i:36900559 original size:16 final size:15
Alignment explanation
Indices: 36900538--36900583 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
36900528 AACTCGAATT
36900538 CACATAATCACATATA
1 CACATAATCACATA-A
*
36900554 CACATAATCTCATGAA
1 CACATAATCACAT-AA
*
36900570 CTCATAATCACATA
1 CACATAATCACATA
36900584 GTTCCTAGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 1 0.04
16 24 0.92
17 1 0.04
ACGTcount: A:0.46, C:0.26, G:0.02, T:0.26
Consensus pattern (15 bp):
CACATAATCACATAA
Found at i:36904101 original size:46 final size:46
Alignment explanation
Indices: 36903955--36904125 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
36903945 GATGTGAGGT
* * **
36903955 AGTGTAAGACATGTCTAGGACATGCATC-G-ATCGCATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCG-A-GACAAGAGCC
* *
36904001 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACAAGAGCC
* * * * * *
36904049 AATGTAAGACATGTTTGAGACATGCATCGGCCTCGGGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGAC-AAGAGCC
36904095 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
36904126 TACTTGAAGA
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
46 53 0.51
47 26 0.25
48 19 0.18
49 2 0.02
50 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACAAGAGCC
Found at i:36904847 original size:27 final size:26
Alignment explanation
Indices: 36904807--36904918 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
36904797 AGGAAACATC
**
36904807 CTGGTGGCGATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
36904834 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
36904861 CTGGTGGCTCAGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
36904889 CTGGTGACTTTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
36904915 CTGG
1 CTGG
36904919 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.69
28 15 0.21
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:36909933 original size:79 final size:81
Alignment explanation
Indices: 36909793--36909977 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36909783 TTGAATGATG
*
36909793 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36909857 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
36909872 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36909934 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
36909952 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36909978 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:36909991 original size:40 final size:40
Alignment explanation
Indices: 36909794--36909977 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36909784 TGAATGATGT
* * * *
36909794 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36909834 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36909874 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36909912 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36909953 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36909978 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36909999 original size:79 final size:79
Alignment explanation
Indices: 36909846--36910010 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36909836 GGACTAAGAT
* **
36909846 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
36909911 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* *
36909925 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36909988 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
36910004 CCGAAGG
1 CCGAAGG
36910011 TACGACTTCT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCTCGGTTAAATC
Found at i:36917565 original size:39 final size:40
Alignment explanation
Indices: 36917465--36917649 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
36917455 TTGAATGATG
* * * *
36917465 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
36917505 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36917545 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36917584 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
36917625 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36917650 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 40 0.30
40 82 0.62
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36917602 original size:79 final size:82
Alignment explanation
Indices: 36917465--36917649 Score: 247
Period size: 79 Copynumber: 2.3 Consensus size: 82
36917455 TTGAATGATG
*
36917465 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
36917529 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * * * **
36917545 TCCGGGTTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
36917607 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
*
36917625 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36917650 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:36917671 original size:79 final size:79
Alignment explanation
Indices: 36917518--36917682 Score: 219
Period size: 79 Copynumber: 2.1 Consensus size: 79
36917508 GGACTAAGAT
* **
36917518 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAA
*
36917583 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
36917597 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGT-CCGAAGGCATTTGAACGAGTTA-C
* *
36917660 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36917676 CCGAAGG
1 CCGAAGG
36917683 TACGTGATTT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
79 50 0.66
80 26 0.34
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36917679 original size:119 final size:119
Alignment explanation
Indices: 36917465--36917682 Score: 273
Period size: 119 Copynumber: 1.8 Consensus size: 119
36917455 TTGAATGATG
*
36917465 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
36917530 GTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
66 GAACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * * *
36917584 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* *
36917647 TTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
64 TTGAACGAGTTA-CTAAATCCGGGTT-AAGTCCGAAGG
36917683 TACGTGATTT
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
118 7 0.08
119 70 0.83
120 7 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36924629 original size:40 final size:40
Alignment explanation
Indices: 36924390--36924615 Score: 323
Period size: 40 Copynumber: 5.7 Consensus size: 40
36924380 TTGAATGATG
* * * * *
36924390 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
36924430 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
36924470 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
36924510 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
36924550 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
36924591 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
36924616 AAAGAGTAGC
Statistics
Matches: 173, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 162 0.94
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36924633 original size:120 final size:120
Alignment explanation
Indices: 36924390--36924648 Score: 312
Period size: 120 Copynumber: 2.2 Consensus size: 120
36924380 TTGAATGATG
* *
36924390 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ***
36924455 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAAAGAGTTACTAAA
* * * **
36924510 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
36924573 TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAAAGAG-TAGCTATA
64 TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAAAGAGTTA-CTAAA
* *
36924630 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36924649 TACGTGATTT
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
119 17 0.14
120 94 0.78
121 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAAAGAGTTACTAAA
Found at i:36930877 original size:27 final size:28
Alignment explanation
Indices: 36930832--36930904 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 28
36930822 ACATGATAGT
*
36930832 AAAGAATAGCCTTTGTGGCGAACTCTGA
1 AAAGAATAGCCTTTGTGGCAAACTCTGA
*
36930860 AAAGAATA-CCTTTTTGGCAAACTCTGA
1 AAAGAATAGCCTTTGTGGCAAACTCTGA
* * *
36930887 ATAG-ATCGCCTTAGTGGC
1 AAAGAATAGCCTTTGTGGC
36930905 GTACCCTATC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.05
27 28 0.74
28 8 0.21
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (28 bp):
AAAGAATAGCCTTTGTGGCAAACTCTGA
Found at i:36933356 original size:20 final size:20
Alignment explanation
Indices: 36933331--36933369 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
36933321 TACTTTCTTC
36933331 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
36933351 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
36933370 TAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:36933689 original size:50 final size:51
Alignment explanation
Indices: 36933625--36933810 Score: 164
Period size: 50 Copynumber: 3.6 Consensus size: 51
36933615 CTGTACTGCA
* * ** *
36933625 AATGCCATATCCCAGATATGGTCTTACATGA-GAGTTCTCATAC-CGGTGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTCAT-CTCGGTACC
* * *
36933675 CATGCCATGTCCCAGACATGGTCTTAC-GGAGGACCTCTCATCTGGGTACC
1 AATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTCATCTCGGTACC
* * **
36933725 AACGCCATGTCCCAGACATGGTCTTACATG-GAACCTCTCATAACCTCAATAATACC
1 AATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTCAT---CTC---GGTACC
*
36933781 AATGTCATGTCCCAGACATGGTCTTACATG
1 AATGCCATGTCCCAGACATGGTCTTACATG
36933811 GGGTCCCATG
Statistics
Matches: 110, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
49 3 0.03
50 72 0.65
51 1 0.01
53 2 0.02
56 32 0.29
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (51 bp):
AATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTCATCTCGGTACC
Found at i:36936718 original size:17 final size:18
Alignment explanation
Indices: 36936698--36936735 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
36936688 TTAGAATTGG
*
36936698 ATTGAGA-AAATAATTTA
1 ATTGAGAGAAATAATTAA
*
36936715 ATTGAGAGAATTAATTAA
1 ATTGAGAGAAATAATTAA
36936733 ATT
1 ATT
36936736 TATTTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (18 bp):
ATTGAGAGAAATAATTAA
Found at i:36943061 original size:48 final size:48
Alignment explanation
Indices: 36942990--36943138 Score: 167
Period size: 48 Copynumber: 3.1 Consensus size: 48
36942980 TACTATGCGT
* *
36942990 ACCGATATTCTTTTATGACACAAGGGTGGCACGAACTGTGTGCAGGCC
1 ACCGATATTCTGTTATGACACAAGGGTGACACGAACTGTGTGCAGGCC
* *
36943038 ACCGATATTCTGTTATGATACAAGGGTGACACGGACTGTGTGCAGGCC
1 ACCGATATTCTGTTATGACACAAGGGTGACACGAACTGTGTGCAGGCC
* * * * * * *
36943086 ACCGAGAATCTATTATTACACAAAGGTGGTACA-G-ACTGTGTACAAGCC
1 ACCGATATTCTGTTATGACACAAGGGT-G-ACACGAACTGTGTGCAGGCC
36943134 ACCGA
1 ACCGA
36943139 GAAATTTGTT
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
48 82 0.94
49 2 0.02
50 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (48 bp):
ACCGATATTCTGTTATGACACAAGGGTGACACGAACTGTGTGCAGGCC
Found at i:36943491 original size:20 final size:20
Alignment explanation
Indices: 36943444--36943492 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
36943434 AATAAGCGTG
* *
36943444 GAAAGTAAAGAAATGGAAAT
1 GAAAATAAAGAAATCGAAAT
36943464 GAAAATAAAGAAATTCGAAA-
1 GAAAATAAAGAAA-TCGAAAT
*
36943484 GAATATAAA
1 GAAAATAAA
36943493 ATTGTTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.63, C:0.02, G:0.18, T:0.16
Consensus pattern (20 bp):
GAAAATAAAGAAATCGAAAT
Found at i:36946937 original size:27 final size:27
Alignment explanation
Indices: 36946885--36946947 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
36946875 AAACACTAGC
36946885 TCGCCAGACCTACTGGCGTACACCATA
1 TCGCCAGACCTACTGGCGTACACCATA
* * *
36946912 TCGCCAGAGCTACTGGCTTACACCATC
1 TCGCCAGACCTACTGGCGTACACCATA
*
36946939 TCCCCAGAC
1 TCGCCAGAC
36946948 TTGCTAGCGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.24, C:0.40, G:0.17, T:0.19
Consensus pattern (27 bp):
TCGCCAGACCTACTGGCGTACACCATA
Found at i:36946958 original size:54 final size:54
Alignment explanation
Indices: 36946900--36947020 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
36946890 AGACCTACTG
* * * *
36946900 GCGTACACCATATCGCCAGAGCTACTGGCTTACACCATCTCCCCAGACTTGCTA
1 GCGTACACCATATCGCCAAACCTACTGGCATACACCATCTCACCAGACTTGCTA
* * * * * *
36946954 GCGTACATCATCTTGCCAAACCTTCTGGCATATAGCATCTCACCAGACTTGCTA
1 GCGTACACCATATCGCCAAACCTACTGGCATACACCATCTCACCAGACTTGCTA
*
36947008 GCGCACACCATAT
1 GCGTACACCATAT
36947021 TGTCAGACTT
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.24
Consensus pattern (54 bp):
GCGTACACCATATCGCCAAACCTACTGGCATACACCATCTCACCAGACTTGCTA
Found at i:36946960 original size:27 final size:27
Alignment explanation
Indices: 36946930--36947018 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
36946920 GCTACTGGCT
*
36946930 TACACCATCTCCCCAGACTTGCTAGCG
1 TACACCATCTCACCAGACTTGCTAGCG
* ** * * *
36946957 TACATCATCTTGCCAAACCTT-CTGGCA
1 TACACCATCTCACCAGA-CTTGCTAGCG
* *
36946984 TATAGCATCTCACCAGACTTGCTAGCG
1 TACACCATCTCACCAGACTTGCTAGCG
*
36947011 CACACCAT
1 TACACCAT
36947019 ATTGTCAGAC
Statistics
Matches: 44, Mismatches: 16, Indels: 4
0.69 0.25 0.06
Matches are distributed among these distances:
26 3 0.07
27 38 0.86
28 3 0.07
ACGTcount: A:0.26, C:0.36, G:0.13, T:0.25
Consensus pattern (27 bp):
TACACCATCTCACCAGACTTGCTAGCG
Found at i:36949200 original size:13 final size:13
Alignment explanation
Indices: 36949184--36949316 Score: 65
Period size: 13 Copynumber: 9.9 Consensus size: 13
36949174 GAAAAATGAA
36949184 TATATGGAATGGT
1 TATATGGAATGGT
* *
36949197 TATAT-AAATCGAT
1 TATATGGAAT-GGT
*
36949210 TATATGGAAAATGGA
1 TATATGG--AATGGT
*
36949225 TATATGAAATGGT
1 TATATGGAATGGT
*
36949238 TACAT-GAATCGGT
1 TATATGGAAT-GGT
* * *
36949251 TATATGAAAATAGA
1 TATATG-GAATGGT
*
36949265 TATATGAAATGGT
1 TATATGGAATGGT
* *
36949278 TATA-AGAACCGGT
1 TATATGGAA-TGGT
* *
36949291 TATATGGAAATAGA
1 TATATGG-AATGGT
36949305 TATATGGAATGG
1 TATATGGAATGG
36949317 AACATTGGAT
Statistics
Matches: 87, Mismatches: 23, Indels: 20
0.67 0.18 0.15
Matches are distributed among these distances:
12 8 0.09
13 48 0.55
14 16 0.18
15 12 0.14
16 3 0.03
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.32
Consensus pattern (13 bp):
TATATGGAATGGT
Found at i:36949271 original size:40 final size:40
Alignment explanation
Indices: 36949183--36949316 Score: 178
Period size: 40 Copynumber: 3.3 Consensus size: 40
36949173 TGAAAAATGA
* * * *
36949183 ATATATGGAATGGTTATATAAATCGATTATATGGAAAATGG
1 ATATATGAAATGGTTATATGAATCGGTTATAT-GAAAATAG
*
36949224 ATATATGAAATGGTTACATGAATCGGTTATATGAAAATAG
1 ATATATGAAATGGTTATATGAATCGGTTATATGAAAATAG
* * *
36949264 ATATATGAAATGGTTATAAGAACCGGTTATATGGAAATAG
1 ATATATGAAATGGTTATATGAATCGGTTATATGAAAATAG
*
36949304 ATATATGGAATGG
1 ATATATGAAATGG
36949317 AACATTGGAT
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 55 0.66
41 28 0.34
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.32
Consensus pattern (40 bp):
ATATATGAAATGGTTATATGAATCGGTTATATGAAAATAG
Found at i:36954976 original size:39 final size:39
Alignment explanation
Indices: 36954923--36955065 Score: 207
Period size: 39 Copynumber: 3.7 Consensus size: 39
36954913 ATATCCATAA
* *
36954923 ATATGA-TATTGTGATCTATGCTTAAATTTTATGTGATT
1 ATATGAGTATTGTGATATATGCTTAAATGTTATGTGATT
* *
36954961 ATATGAGTATTGTGATATATGCTTAAATGTTATGCGGTT
1 ATATGAGTATTGTGATATATGCTTAAATGTTATGTGATT
*
36955000 ATATGAGTATTGTGATATATACTTAAATGTTATGTGATT
1 ATATGAGTATTGTGATATATGCTTAAATGTTATGTGATT
* **
36955039 ATATGTGTAAGGTGATATATGCTTAAA
1 ATATGAGTATTGTGATATATGCTTAAA
36955066 AGTGAATATG
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 6 0.06
39 87 0.94
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45
Consensus pattern (39 bp):
ATATGAGTATTGTGATATATGCTTAAATGTTATGTGATT
Found at i:36961952 original size:9 final size:9
Alignment explanation
Indices: 36961918--36961966 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
36961908 TCGATTTAAA
36961918 AAATTAA-T
1 AAATTAATT
36961926 AAATT--TT
1 AAATTAATT
36961933 AAATT--TT
1 AAATTAATT
36961940 AAATTAATT
1 AAATTAATT
36961949 AAATTAATT
1 AAATTAATT
*
36961958 ATATTAATT
1 AAATTAATT
36961967 TTTTGAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
7 13 0.35
8 5 0.14
9 19 0.51
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
AAATTAATT
Found at i:36962191 original size:22 final size:21
Alignment explanation
Indices: 36962150--36962216 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 21
36962140 ATCTTCAAAA
36962150 ATTCAAAATATTTATAAAATATT
1 ATTCAAAAT-TTTAT-AAATATT
*
36962173 TTTCTAAAATTTTATAAATATAT
1 ATTC-AAAATTTTATAAATAT-T
*
36962196 ATTCAAAAATTTA-AAATATT
1 ATTCAAAATTTTATAAATATT
36962216 A
1 A
36962217 AAAATTACTA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
20 2 0.05
21 6 0.15
22 14 0.36
23 12 0.31
24 5 0.13
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTCAAAATTTTATAAATATT
Found at i:36962204 original size:23 final size:23
Alignment explanation
Indices: 36962150--36962214 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
36962140 ATCTTCAAAA
36962150 ATTCAAAATATTTATAAA-ATATT
1 ATTCAAAAT-TTTATAAATATATT
*
36962173 TTTCTAAAATTTTATAAATATA-T
1 ATTC-AAAATTTTATAAATATATT
*
36962196 ATTCAAAAATTTA-AAATAT
1 ATTCAAAATTTTATAAATAT
36962215 TAAAAATTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 6 0.16
22 8 0.22
23 15 0.41
24 8 0.22
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTCAAAATTTTATAAATATATT
Found at i:36967290 original size:41 final size:41
Alignment explanation
Indices: 36967244--36967434 Score: 265
Period size: 41 Copynumber: 4.7 Consensus size: 41
36967234 TAATTATTCA
36967244 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * **
36967285 TTGAATTGCACATACATGCCATTGTTTGTACTTCGGTACCC
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
36967326 CTGAATTGCACATATGTGCCCCTGTTTGTACTTTGATACCC
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
36967367 CTAAATTGCACATACATGCCACTGTTTGTACTTCGGTACCC
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
36967408 TTGAATTGCACCTATGTGCCCCTGTTT
1 CTGAATTGCACATACGTGCCCCTGTTT
36967435 ACACTCCGGT
Statistics
Matches: 127, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 127 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (41 bp):
CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
Found at i:36967381 original size:82 final size:82
Alignment explanation
Indices: 36967244--36967434 Score: 310
Period size: 82 Copynumber: 2.3 Consensus size: 82
36967234 TAATTATTCA
* * * * *
36967244 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAATTGCACATACATGCCATTG
1 CTGAATTGCACATATGTGCCCCTGTTTGTACTTCGATACCCCTAAATTGCACATACATGCCACTG
36967309 TTTGTACTTCGGTACCC
66 TTTGTACTTCGGTACCC
*
36967326 CTGAATTGCACATATGTGCCCCTGTTTGTACTTTGATACCCCTAAATTGCACATACATGCCACTG
1 CTGAATTGCACATATGTGCCCCTGTTTGTACTTCGATACCCCTAAATTGCACATACATGCCACTG
36967391 TTTGTACTTCGGTACCC
66 TTTGTACTTCGGTACCC
* *
36967408 TTGAATTGCACCTATGTGCCCCTGTTT
1 CTGAATTGCACATATGTGCCCCTGTTT
36967435 ACACTCCGGT
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 101 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (82 bp):
CTGAATTGCACATATGTGCCCCTGTTTGTACTTCGATACCCCTAAATTGCACATACATGCCACTG
TTTGTACTTCGGTACCC
Found at i:36975012 original size:50 final size:49
Alignment explanation
Indices: 36974856--36975029 Score: 172
Period size: 51 Copynumber: 3.4 Consensus size: 49
36974846 CATAGTCTGT
*
36974856 ACATAGTACTACACATGTGACCATTACCA-TCCGATACACGTAGTAGCCTGC
1 ACATAGTACTACACATGTGACC--TA-CATTCCGGTACACGTAGTAGCCTGC
* * * * * * * *
36974907 ACATAGTACTACAGACGTGA-TTGAAATTATCCAGTACGCATAGTAGCCTGT
1 ACATAGTACTACACATGTGACCT-ACA-T-TCCGGTACACGTAGTAGCCTGC
*
36974958 ACATAGTACTACACATGCGACCTATCATTCCGGTACACGTAGTAGCCTGC
1 ACATAGTACTACACATGTGACCTA-CATTCCGGTACACGTAGTAGCCTGC
*
36975008 ACATAGTACTACACACGTGACC
1 ACATAGTACTACACATGTGACC
36975030 ATCACTTTCA
Statistics
Matches: 97, Mismatches: 20, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
48 2 0.02
49 1 0.01
50 38 0.39
51 54 0.56
52 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (49 bp):
ACATAGTACTACACATGTGACCTACATTCCGGTACACGTAGTAGCCTGC
Found at i:36979388 original size:14 final size:15
Alignment explanation
Indices: 36979355--36979388 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
36979345 ATTGATATTA
36979355 TTATTATTTCCTTTC
1 TTATTATTTCCTTTC
*
36979370 CTATTATTT-CTTTC
1 TTATTATTTCCTTTC
36979384 TTATT
1 TTATT
36979389 TCTTTTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (15 bp):
TTATTATTTCCTTTC
Found at i:36987306 original size:67 final size:67
Alignment explanation
Indices: 36987225--36987360 Score: 227
Period size: 67 Copynumber: 2.0 Consensus size: 67
36987215 AAAGAGGTGC
* *
36987225 TAATCATCCTAGGAAGGCCTTTCCTAGAAATAGGAAGGACTTTAGTTGATGTGCAGAAAGACGAG
1 TAATCATCCTAGGAAGGCCTTTCCTAGAAACAGGAAGGACTTTAATTGATGTGCAGAAAGACGAG
36987290 CT
66 CT
* * *
36987292 TAATCATCCTAGGAAGGCCTTTCTTGGAAACAGGATGGACTTTAATTGATGTGCAGAAAGACGAG
1 TAATCATCCTAGGAAGGCCTTTCCTAGAAACAGGAAGGACTTTAATTGATGTGCAGAAAGACGAG
36987357 CT
66 CT
36987359 TA
1 TA
36987361 CCATACGTGT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (67 bp):
TAATCATCCTAGGAAGGCCTTTCCTAGAAACAGGAAGGACTTTAATTGATGTGCAGAAAGACGAG
CT
Found at i:36989322 original size:21 final size:21
Alignment explanation
Indices: 36989285--36989324 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
36989275 ATAAGATTGG
36989285 AAATACTACGAGAATGGCTAT
1 AAATACTACGAGAATGGCTAT
*
36989306 AAATAGCTAGGAG-ATGGCT
1 AAATA-CTACGAGAATGGCT
36989325 CCCAGTGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.40, C:0.12, G:0.25, T:0.23
Consensus pattern (21 bp):
AAATACTACGAGAATGGCTAT
Found at i:36991119 original size:45 final size:45
Alignment explanation
Indices: 36991070--36991164 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
36991060 AACACCACCC
*
36991070 TTATAGTCAATAGTACTC-GCTGAAATCAGCACATAGCAACCACTT
1 TTATACTCAATAGTAC-CGGCTGAAATCAGCACATAGCAACCACTT
* * * *
36991115 TTATACTCAATGGTACCGGGTGAATTCAGCACATAGCAATCACTT
1 TTATACTCAATAGTACCGGCTGAAATCAGCACATAGCAACCACTT
*
36991160 ATATA
1 TTATA
36991165 ACAATTGCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (45 bp):
TTATACTCAATAGTACCGGCTGAAATCAGCACATAGCAACCACTT
Found at i:36993503 original size:25 final size:26
Alignment explanation
Indices: 36993471--36993527 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
36993461 ACCCCCAAAC
*
36993471 AAATTTTGACAGTTTTACCC-TGTTA
1 AAATTTTGACAATTTTACCCTTGTTA
*
36993496 AAATTTTGACAATTTTTCCCTTGTTA
1 AAATTTTGACAATTTTACCCTTGTTA
36993522 AAATTT
1 AAATTT
36993528 CAAGAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 18 0.62
26 11 0.38
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.47
Consensus pattern (26 bp):
AAATTTTGACAATTTTACCCTTGTTA
Found at i:36993512 original size:26 final size:25
Alignment explanation
Indices: 36993471--36993527 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
36993461 ACCCCCAAAC
36993471 AAATTTTGACAGTTTTACCC-TGTTA
1 AAATTTTGACAGTTTT-CCCTTGTTA
*
36993496 AAATTTTGACAATTTTTCCCTTGTTA
1 AAATTTTGAC-AGTTTTCCCTTGTTA
36993522 AAATTT
1 AAATTT
36993528 CAAGAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 13 0.45
26 16 0.55
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.47
Consensus pattern (25 bp):
AAATTTTGACAGTTTTCCCTTGTTA
Found at i:37003212 original size:25 final size:24
Alignment explanation
Indices: 37003184--37003253 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
37003174 ATTTCATTTA
37003184 GAAAATGTTCTCCTTATTAAAGTAG
1 GAAAATGTTCTCCTT-TTAAAGTAG
* **
37003209 GAAAGTAATCTCCTTTTGAAAGTAG
1 GAAAATGTTCTCCTTTT-AAAGTAG
* *
37003234 GAAAAAGTTATCCTTCTTAA
1 GAAAATGTTCTCCTT-TTAA
37003254 TTTAGGAGTA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
24 2 0.06
25 31 0.89
26 2 0.06
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (24 bp):
GAAAATGTTCTCCTTTTAAAGTAG
Found at i:37004384 original size:41 final size:41
Alignment explanation
Indices: 37004314--37004407 Score: 129
Period size: 41 Copynumber: 2.3 Consensus size: 41
37004304 TTTTACATGG
* *
37004314 TAATCACAT-TCACTTTTAAGCATATATCACATTACAAATA
1 TAATCACATATCACTTTTAAGCATAGATCACAATACAAATA
* *
37004354 TAATCACATATCACATTTT-CGCATAGATCACAATACACATA
1 TAATCACATATCAC-TTTTAAGCATAGATCACAATACAAATA
37004395 TAATCACATATCA
1 TAATCACATATCA
37004408 TTCATATGTC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
40 9 0.19
41 35 0.73
42 4 0.08
ACGTcount: A:0.43, C:0.22, G:0.03, T:0.32
Consensus pattern (41 bp):
TAATCACATATCACTTTTAAGCATAGATCACAATACAAATA
Found at i:37004422 original size:35 final size:35
Alignment explanation
Indices: 37004375--37004485 Score: 123
Period size: 35 Copynumber: 3.1 Consensus size: 35
37004365 CACATTTTCG
* *
37004375 CATAGATCACAATACACATATAATCACATATCATT
1 CATATATCACAATACTCATATAATCACATATCATT
* *
37004410 CATATGTCACAATACTCATATAATCACATAATATTCATG
1 CATATATCACAATACTCATATAATCAC---ATA-TCATT
** *
37004449 CATATATCACAATACTTTTATAATCACATAACATT
1 CATATATCACAATACTCATATAATCACATATCATT
37004484 CA
1 CA
37004486 AAGATATATC
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
35 29 0.46
36 3 0.05
38 3 0.05
39 28 0.44
ACGTcount: A:0.43, C:0.22, G:0.03, T:0.32
Consensus pattern (35 bp):
CATATATCACAATACTCATATAATCACATATCATT
Found at i:37004430 original size:16 final size:17
Alignment explanation
Indices: 37004380--37004476 Score: 70
Period size: 17 Copynumber: 5.4 Consensus size: 17
37004370 TTTCGCATAG
*
37004380 ATCACAATACACATATA
1 ATCACAATACTCATATA
*
37004397 ATCACATATCATTCATAT-
1 ATCACA-AT-ACTCATATA
*
37004415 GTCACAATACTCATATA
1 ATCACAATACTCATATA
*
37004432 ATCACATAATATTCATGCATA
1 ATCAC--AATACTCAT--ATA
**
37004453 TATCACAATACTTTTATA
1 -ATCACAATACTCATATA
37004471 ATCACA
1 ATCACA
37004477 TAACATTCAA
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
16 7 0.11
17 18 0.29
18 10 0.16
19 14 0.22
20 6 0.10
21 3 0.05
22 5 0.08
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (17 bp):
ATCACAATACTCATATA
Found at i:37004464 original size:39 final size:39
Alignment explanation
Indices: 37004333--37004499 Score: 148
Period size: 39 Copynumber: 4.3 Consensus size: 39
37004323 TCACTTTTAA
* * *
37004333 GCATATATCACATTACAAATATAATCACATATCACATT-TT
1 GCATATATCACAATACACATATAATCACATA--ACATTCAT
*
37004373 CGCATAGATCACAATACACATATAATCACAT---A-TCAT
1 -GCATATATCACAATACACATATAATCACATAACATTCAT
* * * *
37004409 TCATATGTCACAATACTCATATAATCACATAATATTCAT
1 GCATATATCACAATACACATATAATCACATAACATTCAT
*** *
37004448 GCATATATCACAATACTTTTATAATCACATAACATTCAAA
1 GCATATATCACAATACACATATAATCACATAACATTC-AT
37004488 G-ATATATCACAA
1 GCATATATCACAA
37004500 CACTAAAAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
35 27 0.25
36 2 0.02
38 1 0.01
39 47 0.44
40 2 0.02
41 27 0.25
ACGTcount: A:0.44, C:0.21, G:0.04, T:0.32
Consensus pattern (39 bp):
GCATATATCACAATACACATATAATCACATAACATTCAT
Found at i:37006671 original size:17 final size:17
Alignment explanation
Indices: 37006637--37006674 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
37006627 CCCAGTGCAC
* *
37006637 TGAC-ATGAATATGTAA
1 TGACAATGAAAATGAAA
37006653 TGACAATGAAAATGAAA
1 TGACAATGAAAATGAAA
37006670 TGACA
1 TGACA
37006675 GTTTATACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.50, C:0.08, G:0.18, T:0.24
Consensus pattern (17 bp):
TGACAATGAAAATGAAA
Found at i:37016879 original size:28 final size:28
Alignment explanation
Indices: 37016838--37016969 Score: 167
Period size: 28 Copynumber: 4.8 Consensus size: 28
37016828 GTTCAAGGTC
* *
37016838 TGCCACAAAAGCTTCCTTTAATAGTGAT
1 TGCCACAAAGGCTTCCTTTAATAGAGAT
* * *
37016866 AGCCACAAAGGCTTCC-TTAACAAAGAT
1 TGCCACAAAGGCTTCCTTTAATAGAGAT
* *
37016893 CGCCACAAAGTCTTCCTTTAATAGAGAT
1 TGCCACAAAGGCTTCCTTTAATAGAGAT
* *
37016921 TGCCTCAAAGGCTTCCTTTAATAGACAT
1 TGCCACAAAGGCTTCCTTTAATAGAGAT
*
37016949 TGCCACAAAGACTTCCTTTAA
1 TGCCACAAAGGCTTCCTTTAA
37016970 CAGTGATTTA
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 22 0.25
28 66 0.75
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (28 bp):
TGCCACAAAGGCTTCCTTTAATAGAGAT
Done.