Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 122 of 214
Found at i:37016908 original size:55 final size:55
Alignment explanation
Indices: 37016839--37016976 Score: 170
Period size: 55 Copynumber: 2.5 Consensus size: 55
37016829 TTCAAGGTCT
*
37016839 GCCACAAAAGCTTCCTTTAATAGTGATAGCCACAAAGGCTTCC-TTAACAAAGATC
1 GCCAC-AAAGCTTCCTTTAATAGTGATAGCCACAAAGGCTTCCTTTAACAAACATC
* * * * * *
37016894 GCCACAAAGTCTTCCTTTAATAGAGATTGCCTCAAAGGCTTCCTTTAATAGACATT
1 GCCACAAAG-CTTCCTTTAATAGTGATAGCCACAAAGGCTTCCTTTAACAAACATC
*
37016950 GCCACAAAGACTTCCTTTAACAGTGAT
1 GCCACAAAG-CTTCCTTTAATAGTGAT
37016977 TTAGGCGATA
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
54 4 0.06
55 35 0.49
56 32 0.45
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (55 bp):
GCCACAAAGCTTCCTTTAATAGTGATAGCCACAAAGGCTTCCTTTAACAAACATC
Found at i:37017186 original size:52 final size:53
Alignment explanation
Indices: 37017094--37017193 Score: 123
Period size: 52 Copynumber: 1.9 Consensus size: 53
37017084 TATATGATGT
** *
37017094 CATAACCCACTAGTTATGGTCATACACGATATGATTTTTTTC-CATATAATAC
1 CATAACCCACTAGTTACAGTCATACACGATATGATCTTTTTCGCATATAATAC
* * *
37017146 CATAACCCATTAGTTACAGTCTTACATGATAT-AGTCTTTTTCGCATAT
1 CATAACCCACTAGTTACAGTCATACACGATATGA-TCTTTTTCGCATAT
37017194 GATGCAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
51 1 0.03
52 34 0.85
53 5 0.12
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (53 bp):
CATAACCCACTAGTTACAGTCATACACGATATGATCTTTTTCGCATATAATAC
Found at i:37017276 original size:53 final size:51
Alignment explanation
Indices: 37017080--37017284 Score: 160
Period size: 53 Copynumber: 3.9 Consensus size: 51
37017070 TCCTTAAATA
* * * * * *
37017080 TTTCTATATGATGTCATAACCCA-CTAGTTATGGTCATACACGATATGATTTT
1 TTTCCATATGATGCCATAACCCATC-AGTTACGGTCTTACAAGATATG-TCTT
* * * * *
37017132 TTTCCATATAATACCATAACCCATTAGTTACAGTCTTACATGATATAGTCTT
1 TTTCCATATGATGCCATAACCCATCAGTTACGGTCTTACAAGATAT-GTCTT
* * * ** *
37017184 TTTCGCATATGATGCAATAACGCACCAGTTACGACCTTACAAGATGTGCTCTT
1 TTTC-CATATGATGCCATAACCCATCAGTTACGGTCTTACAAGATATG-TCTT
* * * *
37017237 CTTCCTATATGATGCCATAACCCATCAATTATGGTCTTACACGATATG
1 TTTCC-ATATGATGCCATAACCCATCAGTTACGGTCTTACAAGATATG
37017285 GTCCTTCAGT
Statistics
Matches: 117, Mismatches: 31, Indels: 9
0.75 0.20 0.06
Matches are distributed among these distances:
52 45 0.38
53 72 0.62
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.36
Consensus pattern (51 bp):
TTTCCATATGATGCCATAACCCATCAGTTACGGTCTTACAAGATATGTCTT
Found at i:37022384 original size:51 final size:50
Alignment explanation
Indices: 37022265--37022449 Score: 155
Period size: 50 Copynumber: 3.7 Consensus size: 50
37022255 GAAGTGATGG
* * * * * * *
37022265 TCACGTGTGTAGTGCTATGTCCAGGCTACTACGTGTACCGGA-A-TGATAGG
1 TCACATGTGTA-TACTATGTGCAGGCTACTATGTGTACCAGATAGTAAT-GA
* *
37022315 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCT-TACCAGATAGT-TTCGA
1 TCACATGTGTA-TACTATGTGCAGGCTACTATG-TGTACCAGATAGTAAT-GA
* * * *
37022366 TCACATGTGTAATACTATGTGCAGGCTACTACGTGTATCAGATGGTAATGG
1 TCACATGTGT-ATACTATGTGCAGGCTACTATGTGTACCAGATAGTAATGA
37022417 TCACATGTGT-TGACTATGTGCAGGCTACTATGT
1 TCACATGTGTAT-ACTATGTGCAGGCTACTATGT
37022450 TAACCGAACA
Statistics
Matches: 112, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
49 1 0.01
50 55 0.49
51 53 0.47
52 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (50 bp):
TCACATGTGTATACTATGTGCAGGCTACTATGTGTACCAGATAGTAATGA
Found at i:37022433 original size:101 final size:101
Alignment explanation
Indices: 37022265--37022448 Score: 255
Period size: 101 Copynumber: 1.8 Consensus size: 101
37022255 GAAGTGATGG
* * * * *
37022265 TCACGTGTGTAGTGCTATGTCCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAATACTATGTCCAGGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTAC
37022330 TATGTGCAGGCTACTATGCTTACCAGATAGTTTCGA
66 TATGTGCAGGCTACTATGCTTACCAGATAGTTTCGA
* * * *
37022366 TCACATGTGTAATACTATGTGCAGGCTACTACGTGTATCAG-ATGGTAATGGTCACATGTGTTG-
1 TCACATGTGTAATACTATGTCCAGGCTACTACGTGTACCAGAATGAT-A-GGTCACATGTGTAGT
37022429 ACTATGTGCAGGCTACTATG
64 ACTATGTGCAGGCTACTATG
37022449 TTAACCGAAC
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
100 4 0.06
101 56 0.78
102 12 0.17
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (101 bp):
TCACATGTGTAATACTATGTCCAGGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCTTACCAGATAGTTTCGA
Found at i:37025369 original size:49 final size:51
Alignment explanation
Indices: 37025314--37025417 Score: 135
Period size: 49 Copynumber: 2.1 Consensus size: 51
37025304 TTACAATCAT
* *
37025314 TTTTGAGAAATCCTTATTCATTTAT-AAATGAATT-CA-TTTCT-CATTTTCA
1 TTTTGAGAAAACCATATTCATTT-TCAAATG-ATTCCATTTTCTCCATTTTCA
*
37025363 TTTTGAGAAAACCATATTCATTTTCATATGATTCCATTTTCTCCATTTTCA
1 TTTTGAGAAAACCATATTCATTTTCAAATGATTCCATTTTCTCCATTTTCA
37025414 TTTT
1 TTTT
37025418 CATTTTCATT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
48 4 0.08
49 27 0.56
50 5 0.10
51 12 0.25
ACGTcount: A:0.28, C:0.16, G:0.06, T:0.50
Consensus pattern (51 bp):
TTTTGAGAAAACCATATTCATTTTCAAATGATTCCATTTTCTCCATTTTCA
Found at i:37039910 original size:27 final size:26
Alignment explanation
Indices: 37039741--37039911 Score: 189
Period size: 27 Copynumber: 6.3 Consensus size: 26
37039731 AGAGGTCGTT
* *
37039741 AAATGACCGAAATACTCCCATAGGGTA
1 AAATGACTGAAATAC-CCTATAGGGTA
*
37039768 AAATGACCGAAATACCCTCATAGGGTA
1 AAATGACTGAAATACCCT-ATAGGGTA
*
37039795 AAACGACTGAAATACCCTCATAGGGTA
1 AAATGACTGAAATACCCT-ATAGGGTA
* * * *
37039822 AAATGACTAAAATACCCCCATAAGTTA
1 AAATGACTGAAATA-CCCTATAGGGTA
**
37039849 AAATGACCAAAATATCCCTATAGGGTA
1 AAATGACTGAAATA-CCCTATAGGGTA
*
37039876 AAATGACTGAAATACCTCTAGAGGGTA
1 AAATGACTGAAATACC-CTATAGGGTA
37039903 AAATGACTG
1 AAATGACTG
37039912 TTATACCCCT
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.03
27 118 0.94
28 3 0.02
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (26 bp):
AAATGACTGAAATACCCTATAGGGTA
Found at i:37039920 original size:81 final size:81
Alignment explanation
Indices: 37039741--37039910 Score: 236
Period size: 81 Copynumber: 2.1 Consensus size: 81
37039731 AGAGGTCGTT
** * * *
37039741 AAATGACCGAAATACTCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAACGACTGAA
1 AAATGACTAAAATACCCCCATAAGGTAAAATGACCAAAATACCCTCATAGGGTAAAACGACTGAA
*
37039806 ATACCCTCATAGGGTA
66 ATACCCTCAGAGGGTA
* *
37039822 AAATGACTAAAATACCCCCATAAGTTAAAATGACCAAAATATCCCT-ATAGGGTAAAATGACTGA
1 AAATGACTAAAATACCCCCATAAGGTAAAATGACCAAAATA-CCCTCATAGGGTAAAACGACTGA
37039886 AATA-CCTCTAGAGGGTA
65 AATACCCTC-AGAGGGTA
37039903 AAATGACT
1 AAATGACT
37039911 GTTATACCCC
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 4 0.05
81 71 0.90
82 4 0.05
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (81 bp):
AAATGACTAAAATACCCCCATAAGGTAAAATGACCAAAATACCCTCATAGGGTAAAACGACTGAA
ATACCCTCAGAGGGTA
Found at i:37040149 original size:26 final size:26
Alignment explanation
Indices: 37040072--37040152 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
37040062 TGGAGGAAGT
*
37040072 ATACTATTACTAGTAGCTTTGTTGCA
1 ATACTATTACTAGTAGCTTTGTTGCG
* * *
37040098 ATACTGTTACTAGCAGCTTTGCTGCG
1 ATACTATTACTAGTAGCTTTGTTGCG
*
37040124 ATACTATTACTGGTAGCTTTGTTGCG
1 ATACTATTACTAGTAGCTTTGTTGCG
37040150 ATA
1 ATA
37040153 TTGGTGTGTT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (26 bp):
ATACTATTACTAGTAGCTTTGTTGCG
Found at i:37050590 original size:6 final size:6
Alignment explanation
Indices: 37050579--37050623 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
37050569 CTATATATAC
* *
37050579 AATTTT AATTTTTT ATTTTT TATTTT AATTTT AATTTT AATTTT A
1 AATTTT AA--TTTT AATTTT AATTTT AATTTT AATTTT AATTTT A
37050624 GGTTGTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 28 0.85
8 5 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
AATTTT
Found at i:37063203 original size:45 final size:45
Alignment explanation
Indices: 37063153--37063269 Score: 117
Period size: 45 Copynumber: 2.6 Consensus size: 45
37063143 AGACGACCTA
* * * * *
37063153 CTAGTACAGTGTGGATAAACCACTCATCGATGCAGATAAAAGTTG
1 CTAGTACGGTGTGAATAAACCACTCAACGATACAGACAAAAGTTG
* * * * *
37063198 CTAGTATGGTGTGAATAAATCACTCAACGGTATAGACAAAATTTG
1 CTAGTACGGTGTGAATAAACCACTCAACGATACAGACAAAAGTTG
* * *
37063243 CAAGTACGGTGTGCATAAACCATTCAA
1 CTAGTACGGTGTGAATAAACCACTCAA
37063270 TGATGCAAGT
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.26
Consensus pattern (45 bp):
CTAGTACGGTGTGAATAAACCACTCAACGATACAGACAAAAGTTG
Found at i:37069007 original size:25 final size:25
Alignment explanation
Indices: 37068973--37069046 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 25
37068963 AGGGTGACAG
*
37068973 ATTTGTAGCTCGTGAGAGCATACCA
1 ATTTATAGCTCGTGAGAGCATACCA
* * **
37068998 ATTTATAGCTCGTAAGAGCTTACTG
1 ATTTATAGCTCGTGAGAGCATACCA
* * *
37069023 ATTCATATCTCGTGAGAGCCTACC
1 ATTTATAGCTCGTGAGAGCATACC
37069047 GATCTTCAGC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
ATTTATAGCTCGTGAGAGCATACCA
Found at i:37070771 original size:101 final size:102
Alignment explanation
Indices: 37070629--37070811 Score: 280
Period size: 101 Copynumber: 1.8 Consensus size: 102
37070619 AACTGACGGC
** *
37070629 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAG-AA-TGATAGGTTGCATGTGTAGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGTGAT-GGTCACATGTCTAGTA
*
37070692 CTATGTGCAGGCTACTATGCATACCGGATAGCTTCAAT
65 CTATGCGCAGGCTACTATGCATACCGGATAGCTTCAAT
* * *
37070730 CACGTGTGTAGTACTATGTGCAGGCTACTGCGTGTATCAGAAAGTGATGGTCACTTGTCTAGTAC
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGTGATGGTCACATGTCTAGTAC
37070795 TATGCGCAGGCTACTAT
66 TATGCGCAGGCTACTAT
37070812 ATGAACCTGT
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 38 0.52
102 31 0.42
103 4 0.05
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGTGATGGTCACATGTCTAGTAC
TATGCGCAGGCTACTATGCATACCGGATAGCTTCAAT
Found at i:37071058 original size:16 final size:16
Alignment explanation
Indices: 37071037--37071068 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37071027 TGATTGAAAG
*
37071037 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
37071053 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
37071069 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:37073094 original size:15 final size:15
Alignment explanation
Indices: 37073074--37073103 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37073064 AATATGGTTT
37073074 AATGATAGAAGATTA
1 AATGATAGAAGATTA
*
37073089 AATGATAGATGATTA
1 AATGATAGAAGATTA
37073104 TGCATAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (15 bp):
AATGATAGAAGATTA
Found at i:37088726 original size:53 final size:53
Alignment explanation
Indices: 37088646--37088765 Score: 231
Period size: 53 Copynumber: 2.3 Consensus size: 53
37088636 AACAAAGGGA
37088646 CACACGGCCGTGTCCAGCTCGTATCTCTAGCTGTATAACTCATTAAGTTGGGT
1 CACACGGCCGTGTCCAGCTCGTATCTCTAGCTGTATAACTCATTAAGTTGGGT
37088699 CACACGGCCGTGTCCAGCTCGTATCTCTAGCTGTATAACTCATTAAGTTGGGT
1 CACACGGCCGTGTCCAGCTCGTATCTCTAGCTGTATAACTCATTAAGTTGGGT
*
37088752 CACACGGCCATGTC
1 CACACGGCCGTGTC
37088766 GCAGGCCGTG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 66 1.00
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (53 bp):
CACACGGCCGTGTCCAGCTCGTATCTCTAGCTGTATAACTCATTAAGTTGGGT
Found at i:37088791 original size:53 final size:53
Alignment explanation
Indices: 37088672--37088849 Score: 175
Period size: 53 Copynumber: 3.3 Consensus size: 53
37088662 GCTCGTATCT
* * *
37088672 CTAGCTGTATAACTCATTAAGTTGGGTCACACGGCCGTGTC-CA-GCTCGTATCT
1 CTAGCTGTATAACTCATTAAGTTGGGTCACACGGCCATGTCGCAGGC-CGTGT-G
37088725 CTAGCTGTATAACTCATTAAGTTGGGTCACACGGCCATGTCGCAGGCCGTGTG
1 CTAGCTGTATAACTCATTAAGTTGGGTCACACGGCCATGTCGCAGGCCGTGTG
* * **** *
37088778 C-AGACTGTGTAACTC-TCTAACTTACAACACATGGCCATGTCGCAGGCCGTGTG
1 CTAG-CTGTATAACTCAT-TAAGTTGGGTCACACGGCCATGTCGCAGGCCGTGTG
* *
37088831 CTAGGCCGTGTAACTCATT
1 CTA-GCTGTATAACTCATT
37088850 GACTTAGTAC
Statistics
Matches: 107, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
52 3 0.03
53 82 0.77
54 18 0.17
55 4 0.04
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (53 bp):
CTAGCTGTATAACTCATTAAGTTGGGTCACACGGCCATGTCGCAGGCCGTGTG
Found at i:37091019 original size:10 final size:10
Alignment explanation
Indices: 37090976--37091030 Score: 56
Period size: 10 Copynumber: 5.3 Consensus size: 10
37090966 AATATGAACA
37090976 TGATTAATTT
1 TGATTAATTT
*
37090986 TAATTAATTT
1 TGATTAATTT
*
37090996 TATAGTTAATTT
1 T-GA-TTAATTT
37091008 TGATTAATTT
1 TGATTAATTT
* *
37091018 TGACTATTTT
1 TGATTAATTT
37091028 TGA
1 TGA
37091031 CAGATTCGCA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
10 28 0.74
11 2 0.05
12 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.09, T:0.58
Consensus pattern (10 bp):
TGATTAATTT
Found at i:37125752 original size:15 final size:15
Alignment explanation
Indices: 37125732--37125764 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
37125722 ACAAAAACAG
37125732 TTCGAATCTTCAAGC
1 TTCGAATCTTCAAGC
37125747 TTCGAATCTTCAAGC
1 TTCGAATCTTCAAGC
37125762 TTC
1 TTC
37125765 ACCCCTACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (15 bp):
TTCGAATCTTCAAGC
Found at i:37127804 original size:65 final size:65
Alignment explanation
Indices: 37127700--37127830 Score: 199
Period size: 65 Copynumber: 2.0 Consensus size: 65
37127690 CAAATAGGGG
* * *
37127700 TCACACGACTGTATGATGGGTTGAGGCCATTTGGAGCTAAATGACATGGTCATGTTGTCAATTGA
1 TCACACAACTGTATGATAGGTTGAGGCCATTTGGAGCTAAATGACATGGTCATGTTGTCAACTGA
* * * *
37127765 TCACACAAGTGTATGATAGGTTGAGGCCGTTTGGAGCTAAGTGACATGGTCGTGTTGTCAACTGA
1 TCACACAACTGTATGATAGGTTGAGGCCATTTGGAGCTAAATGACATGGTCATGTTGTCAACTGA
37127830 T
1 T
37127831 GTCATGTAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (65 bp):
TCACACAACTGTATGATAGGTTGAGGCCATTTGGAGCTAAATGACATGGTCATGTTGTCAACTGA
Found at i:37131687 original size:45 final size:44
Alignment explanation
Indices: 37131614--37131702 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 44
37131604 AGATTTGCTA
* * * *
37131614 TTCTCAGTCTGCCCCACTGCAACTTCAGGGGGGATAAGACTTGAT
1 TTCTCAGTCTGCCCCACTACAACCTCA-GGGAGATAAGACCTGAT
* **
37131659 TTCTCAGTCTGCTCGGCTACAACCTCAGGGAGATAAGACCTGAT
1 TTCTCAGTCTGCCCCACTACAACCTCAGGGAGATAAGACCTGAT
37131703 GTGATCTACT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 15 0.41
45 22 0.59
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (44 bp):
TTCTCAGTCTGCCCCACTACAACCTCAGGGAGATAAGACCTGAT
Found at i:37131907 original size:44 final size:44
Alignment explanation
Indices: 37131596--37132698 Score: 268
Period size: 44 Copynumber: 25.2 Consensus size: 44
37131586 TACACCGCCG
* * * *
37131596 GGGAAATAAGATTTGCTATTC-TCAGTCTGCCCCACTGCAACTTCA
1 GGGAGATAAGATTTG-T-TTCTTCAATCTGCTCCACTGCAACCTCA
* * * ** *
37131641 GGGGGGATAAGACTTGATTTC-TCAGTCTGCTCGGCTACAACCTCA
1 -GGGAGATAAGATTTG-TTTCTTCAATCTGCTCCACTGCAACCTCA
** * * * * * *
37131686 GGGAGATAAGACCTG-AT-GT-GATCTACTCTACTGCAACTTCA
1 GGGAGATAAGATTTGTTTCTTCAATCTGCTCCACTGCAACCTCA
* * * * * *
37131727 GAGAGATAAGATCTATTGT-TTTAATCCGCTCCAACTGCAACTTCA
1 GGGAGATAAGATTTGTT-TCTTCAATCTGCTCC-ACTGCAACCTCA
* * * *
37131772 GGGAGATAGGATTATCG--GCTTCAATCTGCTCCACTGTAACCTTA
1 GGGAGATAAGATT-T-GTTTCTTCAATCTGCTCCACTGCAACCTCA
** * * * ** *
37131816 GGGAGATAAGATTTGCCATCTTCGATCTGCTCTACTAC-TGCTTA
1 GGGAGATAAGATTTG-TTTCTTCAATCTGCTCCACTGCAACCTCA
**
37131860 GGGAGATAAGATTTGTTTCTTCGGTCTGCTCCACTGCAACCTCA
1 GGGAGATAAGATTTGTTTCTTCAATCTGCTCCACTGCAACCTCA
** * ** * *
37131904 GGGAGATAAGACCTGATGTGATCTAATTTG-T----TGCAACTTCA
1 GGGAGATAAGATTTG-TTTCTTC-AATCTGCTCCACTGCAACCTCA
* * * * * * * ** *
37131945 GAGAGATAAGATCTATTAT-TTGAATCCGCTCTACTCCCGCTTCA
1 GGGAGATAAGATTTGTT-TCTTCAATCTGCTCCACTGCAACCTCA
* * * **
37131989 GGGAGATAGGATTATCG--GCTTCATTCTGCTCCACTGCAAAGTCA
1 GGGAGATAAGATT-T-GTTTCTTCAATCTGCTCCACTGCAACCTCA
* * * * * * *
37132033 GGGAGATAAGATTTG---ATGCGATCTACTCTATTGCAACCTTA
1 GGGAGATAAGATTTGTTTCTTCAATCTGCTCCACTGCAACCTCA
* * * *
37132074 GAGG-GATAAGATCTGTTATATT-AATCCGCTCCACTGCAACTTCA
1 G-GGAGATAAGATTTGTT-TCTTCAATCTGCTCCACTGCAACCTCA
* * ** * * * * *
37132118 GGGAGATAGGATTAGTGGCTTCAATGTACTCTACTGTATCCTCA
1 GGGAGATAAGATTTGTTTCTTCAATCTGCTCCACTGCAACCTCA
* * * * * ** *
37132162 GGGAGGTAAAATCTGTCATCTTCAATCTGCTCCACTAC-TGCTTA
1 GGGAGATAAGATTTGT-TTCTTCAATCTGCTCCACTGCAACCTCA
* * * ** * *
37132206 GGGAGATATGATCTGAGATTCTTCGGTCTGCTCCACTGTAACTTCA
1 GGGAGATAAGAT-T-TGTTTCTTCAATCTGCTCCACTGCAACCTCA
** * * * * *
37132252 GGGAGATAAGACCTGATGCGATCAA-CT-CT--ACTACAACTTCA
1 GGGAGATAAGATTTGTTTC-TTCAATCTGCTCCACTGCAACCTCA
* * ** * *
37132293 GAGAGATAAGATCTGTTAT-TTCAATCCACTCCACTACAACTTCA
1 GGGAGATAAGATTTGTT-TCTTCAATCTGCTCCACTGCAACCTCA
* * *
37132337 GGGCGATAGGATTATCG--GCTTCAATCTGCTCCACTGCAACCTCA
1 GGGAGATAAGATT-T-GTTTCTTCAATCTGCTCCACTGCAACCTCA
* ** * * *
37132381 TGGAGATAAGATTTGCCATCTTCAGTCTGCCCCACTGCAACTTCA
1 GGGAGATAAGATTTG-TTTCTTCAATCTGCTCCACTGCAACCTCA
* * * * * *
37132426 GGGGGATAAGACTTGCTTTC-TCAGTCTGTTCCGCTGCCACCTCA
1 GGGAGATAAGATTTG-TTTCTTCAATCTGCTCCACTGCAACCTCA
** * * * * ** *
37132470 GGGAGATAAGACCTG-AT-GT-GATCTACTCTGCTGCAACTTCA
1 GGGAGATAAGATTTGTTTCTTCAATCTGCTCCACTGCAACCTCA
** * * * * * * * *
37132511 GATAGATAAGATCTATTAT-TTGAACCCGCTCCACTGCCACTTTA
1 GGGAGATAAGATTTGTT-TCTTCAATCTGCTCCACTGCAACCTCA
* * *
37132555 GGGAGATAGGATTATCG--GCTTCAATCTGCTCCACTACAACCTCA
1 GGGAGATAAGATT-T-GTTTCTTCAATCTGCTCCACTGCAACCTCA
** * *
37132599 GGGAGATAAGATTTGCCATCTTCAGTCTG-TGCCACTGCAACTTCA
1 GGGAGATAAGATTTG-TTTCTTCAATCTGCT-CCACTGCAACCTCA
* * **
37132644 GGGGGATAAGACTTGCTTTC-TCGGTCTGCTCCACTGCAACCTCA
1 GGGAGATAAGATTTG-TTTCTTCAATCTGCTCCACTGCAACCTCA
*
37132688 AGGAGATAAGA
1 GGGAGATAAGA
37132699 CTTGATGTGA
Statistics
Matches: 757, Mismatches: 242, Indels: 118
0.68 0.22 0.11
Matches are distributed among these distances:
39 4 0.01
40 7 0.01
41 127 0.17
42 12 0.02
43 31 0.04
44 357 0.47
45 188 0.25
46 31 0.04
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (44 bp):
GGGAGATAAGATTTGTTTCTTCAATCTGCTCCACTGCAACCTCA
Found at i:37131996 original size:129 final size:129
Alignment explanation
Indices: 37131844--37132140 Score: 327
Period size: 129 Copynumber: 2.3 Consensus size: 129
37131834 TCTTCGATCT
* * * * *
37131844 GCTCTACTACTGCTT-AGGGAGATAAGATT-T-GTTTCTTCGGTCTGCTCCACTGCAACCTCAGG
1 GCTCTACTACAGCTTCAGGGAGATAGGATTATCG--GCTTCAGTCTGCTCCACTGCAAACTCAGG
* * *
37131906 GAGATAAGACCTGATGTGATCTAATTTGTTGCAA-CTTCAGAGAGATAAGATCTATTAT-TTGAA
64 GAGATAAGACCTGATGCGATCTAATCTATTGCAACCTT-AGAGAGATAAGATCTATTATATT-AA
37131969 TCC
127 TCC
* * * *
37131972 GCTCTACTCCCGCTTCAGGGAGATAGGATTATCGGCTTCATTCTGCTCCACTGCAAAGTCAGGGA
1 GCTCTACTACAGCTTCAGGGAGATAGGATTATCGGCTTCAGTCTGCTCCACTGCAAACTCAGGGA
** * * *
37132037 GATAAGATTTGATGCGATCTACTCTATTGCAACCTTAGAGGGATAAGATCTGTTATATTAATCC
66 GATAAGACCTGATGCGATCTAATCTATTGCAACCTTAGAGAGATAAGATCTATTATATTAATCC
* * *
37132101 GCTCCACTGCAACTTCAGGGAGATAGGATTAGT-GGCTTCA
1 GCTCTACTACAGCTTCAGGGAGATAGGATTA-TCGGCTTCA
37132141 ATGTACTCTA
Statistics
Matches: 143, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
128 13 0.09
129 122 0.85
130 7 0.05
131 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (129 bp):
GCTCTACTACAGCTTCAGGGAGATAGGATTATCGGCTTCAGTCTGCTCCACTGCAAACTCAGGGA
GATAAGACCTGATGCGATCTAATCTATTGCAACCTTAGAGAGATAAGATCTATTATATTAATCC
Found at i:37132163 original size:129 final size:129
Alignment explanation
Indices: 37131888--37132166 Score: 330
Period size: 129 Copynumber: 2.2 Consensus size: 129
37131878 CTTCGGTCTG
* * *
37131888 CTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTAATTTGTTGCAACTTCAGAGAGATA
1 CTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAATCTATTGCAACTTCAGAGAGATA
* ** * *
37131953 AGATCTATTATTTGAATCCGCTCTACTCCCGCTTCAGGGAGATAGGATTATCGGCTTCATTCTG
66 AGATCTATTATTTGAATCCGCTCCACTCCAACTTCAGGGAGATAGGATTATCGGCTTCAATCTA
** ** * *
37132017 CTCCACTGCAAAGTCAGGGAGATAAGATTTGATGCGATCTACTCTATTGCAACCTT-AGAGGGAT
1 CTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAATCTATTGCAA-CTTCAGAGAGAT
* * *
37132081 AAGATCTGTTATATT-AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGT-GGCTTCAATG
65 AAGATCTATTAT-TTGAATCCGCTCCACTCCAACTTCAGGGAGATAGGATTA-TCGGCTTCAATC
37132144 TA
128 TA
* * *
37132146 CTCTACTGTATCCTCAGGGAG
1 CTCCACTGCAACCTCAGGGAG
37132167 GTAAAATCTG
Statistics
Matches: 125, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
129 119 0.95
130 6 0.05
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (129 bp):
CTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAATCTATTGCAACTTCAGAGAGATA
AGATCTATTATTTGAATCCGCTCCACTCCAACTTCAGGGAGATAGGATTATCGGCTTCAATCTA
Found at i:37132304 original size:348 final size:347
Alignment explanation
Indices: 37131682--37132395 Score: 986
Period size: 348 Copynumber: 2.1 Consensus size: 347
37131672 CGGCTACAAC
** * * *
37131682 CTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTGTT
1 CTCAGGGAGATAAGATTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATA
*
37131747 TTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGTAAC
66 TTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTGTAAC
* * * * * * *
37131812 CTTAGGGAGATAAGATTTGCCATCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATTTGTT
131 CTCAGGGAGATAAAATCTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTAGAT
* * ** *
37131877 TCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTAATTTGTTGCAACT
196 TCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAATCTACTACAACT
* * * * **
37131942 TCAGAGAGATAAGATCTATTATTTGAATCCGCTCTACTCCCGCTTCAGGGAGATAGGATTATCGG
261 TCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCGG
*
37132007 CTTCATTCTGCTCCACTGCAAA
326 CTTCAATCTGCTCCACTGCAAA
* * * *
37132029 GTCAGGGAGATAAGATTTGATGCGATCTACTCTATTGCAACCTT-AGAGGGATAAGATCTGTTAT
1 CTCAGGGAGATAAGATTTGATGCGATCTACTCTACTGCAA-CTTCAGAGAGATAAGATCTATTAT
* *
37132093 ATTAATCCGCTCC-ACTGCAACTTCAGGGAGATAGGATTAGT-GGCTTCAATGTACTCTACTGTA
65 ATTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTA-TCGGCTTCAATCTACTCCACTGTA
* * * *
37132156 TCCTCAGGGAGGTAAAATCTGTCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATATGATCTG
129 ACCTCAGGGAGATAAAATCTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-
* *
37132221 AGATTCTTCGGTCTGCTCCACTGTAACTTCAGGGAGATAAGACCTGATGCGATC-AACTCTACTA
192 AGATTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAA-TCTACTA
* *
37132285 CAACTTCAGAGAGATAAGATCTGTTATTTCAATCCACTCCACTACAACTTCAGGGCGATAGGATT
256 CAACTTCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATT
*
37132350 ATCGGCTTCAATCTGCTCCACTGCAAC
321 ATCGGCTTCAATCTGCTCCACTGCAAA
*
37132377 CTCATGGAGATAAGATTTG
1 CTCAGGGAGATAAGATTTG
37132396 CCATCTTCAG
Statistics
Matches: 320, Mismatches: 42, Indels: 9
0.86 0.11 0.02
Matches are distributed among these distances:
346 98 0.31
347 68 0.21
348 154 0.48
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (347 bp):
CTCAGGGAGATAAGATTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATA
TTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTGTAAC
CTCAGGGAGATAAAATCTGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTAGAT
TCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAATCTACTACAACT
TCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCGG
CTTCAATCTGCTCCACTGCAAA
Found at i:37132544 original size:348 final size:345
Alignment explanation
Indices: 37131682--37132609 Score: 791
Period size: 348 Copynumber: 2.7 Consensus size: 345
37131672 CGGCTACAAC
** * * * * * *
37131682 CTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGCAA-CTTCAGAGAGATAAGATCTATTGT
1 CTCAGGGAGATAAGATTTGATGCGATCTACCCCACTGCAACCTT-AGAGGGATAAGATCTGTTAT
* * * * * * * *
37131746 TTTAATCCGCTCCAACTGCAACTTCAGGGAGATAGGATTA-TCGGCTTCAATCTGCTCCACTGTA
65 ATCAATCCGCTCC-ACTGCAACCTCAGGGAGATAAGATGAGT-GGC-TCAATCTACTCTACTGCA
* * * * ** * * * * *
37131810 ACCTTAGGGAGATAAGATTTGCCATCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATTTG
127 ACCTCAGAGAGATAAAATCTATCATCTTCAACCCGCTCCACTACTGCTTAGGGAGATAAGATTAG
* * * ** *
37131875 TTTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGTGATCTAATTTGTTGCAA
192 ATTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAATCTACTACAA
* * * * **
37131940 CTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCTACTCCCGCTTCAGGGAGATAGGATTATC
257 CTTCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATC
*
37132005 GGCTTCATTCTGCTCCACTGCAAA
322 GGCTTCAATCTGCTCCACTGCAAA
* * * *
37132029 GTCAGGGAGATAAGATTTGATGCGATCTACTCTATTGCAACCTTAGAGGGATAAGATCTGTTATA
1 CTCAGGGAGATAAGATTTGATGCGATCTACCCCACTGCAACCTTAGAGGGATAAGATCTGTTATA
* * * * * * *
37132094 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTCAATGTACTCTACTGTATCC
66 TCAATCCGCTCCACTGCAACCTCAGGGAGATAAGATGAGTGGC-TCAATCTACTCTACTGCAACC
* * * * * *
37132159 TCAGGGAGGTAAAATCTGTCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATATGATCTGAGA
130 TCAGAGAGATAAAATCTATCATCTTCAACCCGCTCCACTACTGCTTAGGGAGATAAGAT-T-AGA
* *
37132224 TTCTTCGGTCTGCTCCACTGTAACTTCAGGGAGATAAGACCTGATGCGATC-AACTCTACTACAA
193 TTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAA-TCTACTACAA
* *
37132288 CTTCAGAGAGATAAGATCTGTTATTTCAATCCACTCCACTACAACTTCAGGGCGATAGGATTATC
257 CTTCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATC
*
37132353 GGCTTCAATCTGCTCCACTGCAAC
322 GGCTTCAATCTGCTCCACTGCAAA
* * * *
37132377 CTCATGGAGATAAGATTTGCCAT-CTTCAGTCTGCCCCACTGCAA-CTTCAGGGGGATAAGA-CT
1 CTCAGGGAGATAAGATTTG--ATGC--GA-TCTACCCCACTGCAACCTT-AGAGGGATAAGATC-
* * * * * * *
37132439 TGCTT-TCTCAGTCTGTTCCGCTGCCACCTCAGGGAGATAAGACCTGA-T-G-T-GATCTACTCT
59 TG-TTATATCAATCCGCTCCACTGCAACCTCAGGGAGATAAGA--TGAGTGGCTCAATCTACTCT
* * * * * * * **
37132499 GCTGCAACTTCAGATAGATAAGATCTATTAT-TTGAACCCGCTCCACTGCCACTTTAGGGAGATA
121 ACTGCAACCTCAGAGAGATAAAATCTATCATCTTCAACCCGCTCCACTACTGC-TTAGGGAGATA
* **** ** *
37132563 GGATTATCGGCTTCAATCTGCTCCACTACAACCTCAGGGAGATAAGA
185 AGATTAGATTCTTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGA
37132610 TTTGCCATCT
Statistics
Matches: 479, Mismatches: 86, Indels: 32
0.80 0.14 0.05
Matches are distributed among these distances:
346 98 0.20
347 101 0.21
348 170 0.35
349 44 0.09
350 3 0.01
351 5 0.01
352 53 0.11
353 3 0.01
354 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (345 bp):
CTCAGGGAGATAAGATTTGATGCGATCTACCCCACTGCAACCTTAGAGGGATAAGATCTGTTATA
TCAATCCGCTCCACTGCAACCTCAGGGAGATAAGATGAGTGGCTCAATCTACTCTACTGCAACCT
CAGAGAGATAAAATCTATCATCTTCAACCCGCTCCACTACTGCTTAGGGAGATAAGATTAGATTC
TTCGGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAATCTACTACAACTTC
AGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCT
TCAATCTGCTCCACTGCAAA
Found at i:37132838 original size:437 final size:437
Alignment explanation
Indices: 37132030--37132853 Score: 1000
Period size: 437 Copynumber: 1.9 Consensus size: 437
37132020 CACTGCAAAG
** * * *
37132030 TCAGGGAGATAAGATTTGATGCGATCTACTCTATTGCAACCTTAGAGGGATAAGATCTGTTATAT
1 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACCTTAGAGAGATAAGATCTATTATAT
* * * ** *
37132095 TAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTCAATGTACTCTACTGTATCCT
66 TAACCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTCAATCTACTCCACTACAACCT
* * ** * *
37132160 CAGGGAGGTAAAATCTGTCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATATGATCTGAGAT
131 CAGGGAGATAAAATCTGCCATCTTCAATCTGCTCCACTACAACTTAGGGAGATAAGATCTGACAT
* * *
37132225 TCTTCGGTCTGCTCCACTGTAACTTCAGGGAGATAAGACCTGATGCGATCAACTCTACTACAACT
196 TCTTCGGTCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGATGCGATCAACTCTACTACAACT
* *
37132290 TCAGAGAGATAAGATCTGTTATTTCAATCCACTCCACTACAACTTCAGGGCGATAGGATTATCGG
261 TCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCGG
* * * **
37132355 CTTCAATCTGCTCCACTGCAACCTCATGGAGATAAGATTTGCCATCTTC-AGTCTGCCCCACTGC
326 CTTCAATCTACTCCACTGCAACCTCAAGGAGATAAAATCCGCCATCTTCGA-TCTGCCCCACTGC
37132419 AACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGTTCCGCTGCCACC
390 AACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGTTCCGCTGCCACC
* * *
37132467 TCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAA-CTTCAGATAGATAAGATCTATTAT-
1 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACCTT-AGAGAGATAAGATCTATTATA
* * *
37132530 TTGAACCCGCTCCACTGCCACTTTAGGGAGATAGGATTA-TCGGCTTCAATCTGCTCCACTACAA
65 TT-AACCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGT-GGCTTCAATCTACTCCACTACAA
* * * * *
37132594 CCTCAGGGAGATAAGATTTGCCATCTTCAGTCTG-TGCCACTGCAACTTCAGGGGGATAAGA-CT
128 CCTCAGGGAGATAAAATCTGCCATCTTCAATCTGCT-CCACTACAACTT-AGGGAGATAAGATC-
* * * * *
37132657 TG-CTTTC-TCGGTCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGATGTGATCTACTCTGCT
190 TGACATTCTTCGGTCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGATGCGATCAACTCTACT
* * * * * **
37132720 GCAACTTCAGAGAGATAAGATCTATTGTTTTTAATCCGCTCTACTGTAACTTCAGGGAGATAGGA
255 ACAACTTCAGAGAGATAAGATCTATT-ATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGA
* * * * * *
37132785 TTAGT-GGCTTCAATGTACTCCAGTGTATCCTCAAGGAGGTAAAATCCGCCATCTTCGATCTGCT
319 TTA-TCGGCTTCAATCTACTCCACTGCAACCTCAAGGAGATAAAATCCGCCATCTTCGATCTGCC
37132849 CCACT
383 CCACT
37132854 ACTATTTAGG
Statistics
Matches: 322, Mismatches: 56, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
436 80 0.25
437 228 0.71
438 14 0.04
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (437 bp):
TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACCTTAGAGAGATAAGATCTATTATAT
TAACCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTCAATCTACTCCACTACAACCT
CAGGGAGATAAAATCTGCCATCTTCAATCTGCTCCACTACAACTTAGGGAGATAAGATCTGACAT
TCTTCGGTCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGATGCGATCAACTCTACTACAACT
TCAGAGAGATAAGATCTATTATTTCAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCGG
CTTCAATCTACTCCACTGCAACCTCAAGGAGATAAAATCCGCCATCTTCGATCTGCCCCACTGCA
ACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGTTCCGCTGCCACC
Found at i:37132872 original size:218 final size:218
Alignment explanation
Indices: 37132013--37132872 Score: 962
Period size: 218 Copynumber: 3.9 Consensus size: 218
37132003 TCGGCTTCAT
** ** *
37132013 TCTGCTCCACTGCAAAGTCAGGGAGATAAGATTTGATGCGATCTACTCTATTGCAACCTT-AGAG
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA-CTTCAGAG
* * *
37132077 GGATAAGATCTGTTATATTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGT-GGCTTCA
65 AGATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTA-TCGGCTTCA
* * * * * * * **
37132141 ATGTACTCTACTGTATCCTCAGGGAGGTAAAATCTGTCATCTTCAATCTGCTCCACTACTGCTT-
129 ATCTACTCCACTGCAACCTCAGGGAGATAAAATCTGCCATCTTCAGTCTGCTCCACTACAACTTC
* **
37132205 AGGGAGATATGA-TCTGAGATTCTTCGG
194 AGGGAGATAAGACT-TG-CTTTC-TCGG
* * * *
37132232 TCTGCTCCACTGTAACTTCAGGGAGATAAGACCTGATGCGATCAACTCTACTACAACTTCAGAGA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGA
* * * * *
37132297 GATAAGATCTGTTATTTCAATCCACTCCACTACAACTTCAGGGCGATAGGATTATCGGCTTCAAT
66 GATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAAT
* * * * * *
37132362 CTGCTCCACTGCAACCTCATGGAGATAAGATTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAG
131 CTACTCCACTGCAACCTCAGGGAGATAAAATCTGCCATCTTCAGTCTGCTCCACTACAACTTCAG
* *
37132427 GGGGATAAGACTTGCTTTCTCAG
196 GGAGATAAGACTTGCTTTCTCGG
* * * * * *
37132450 TCTGTTCCGCTGCCACCTCAGGGAGATAAGACCTGATGTGATCTACTCTGCTGCAACTTCAGATA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGA
* * * *
37132515 GATAAGATCTATTATTTGAACCCGCTCCACTGCCACTTTAGGGAGATAGGATTATCGGCTTCAAT
66 GATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAAT
* * * * *
37132580 CTGCTCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCAGTCTG-TGCCACTGCAACTTCA
131 CTACTCCACTGCAACCTCAGGGAGATAAAATCTGCCATCTTCAGTCTGCT-CCACTACAACTTCA
*
37132644 GGGGGATAAGACTTGCTTTCTCGG
195 GGGAGATAAGACTTGCTTTCTCGG
* * * *
37132668 TCTGCTCCACTGCAACCTCAAGGAGATAAGACTTGATGTGATCTACTCTGCTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGA
* * *
37132733 GATAAGATCTATTGTTTTTAATCCGCTCTACTGTAACTTCAGGGAGATAGGATTAGT-GGCTTCA
66 GATAAGATCTATT-ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTA-TCGGCTTCA
* * * * * * * *
37132797 ATGTACTCCAGTGTATCCTCAAGGAGGTAAAATCCGCCATCTTC-GATCTGCTCCACTACTA-TT
129 ATCTACTCCACTGCAACCTCAGGGAGATAAAATCTGCCATCTTCAG-TCTGCTCCACTACAACTT
*
37132860 TAGGGAGATAAGA
193 CAGGGAGATAAGA
37132873 TCTGTAATTT
Statistics
Matches: 548, Mismatches: 84, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
218 288 0.53
219 245 0.45
220 14 0.03
221 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (218 bp):
TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGA
GATAAGATCTATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAAT
CTACTCCACTGCAACCTCAGGGAGATAAAATCTGCCATCTTCAGTCTGCTCCACTACAACTTCAG
GGAGATAAGACTTGCTTTCTCGG
Found at i:37135237 original size:13 final size:12
Alignment explanation
Indices: 37135202--37135236 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
37135192 TGGCCTCTCA
37135202 TTTTTCTTTTCC
1 TTTTTCTTTTCC
*
37135214 TTTTTCCTTTTCT
1 TTTTT-CTTTTCC
37135227 TTTTTCTTTT
1 TTTTTCTTTT
37135237 TATCATTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTTCTTTTCC
Found at i:37135283 original size:19 final size:19
Alignment explanation
Indices: 37135261--37135308 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
37135251 TGATTTTGAT
37135261 TTTTCCTTTTC-TTTTTTTA
1 TTTT-CTTTTCATTTTTTTA
*
37135280 TTTTTTTTTTCATTTTTTTA
1 -TTTTCTTTTCATTTTTTTA
37135300 TTTTCTTTT
1 TTTTCTTTT
37135309 TTTGATTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTCTTTTCATTTTTTTA
Found at i:37135288 original size:25 final size:25
Alignment explanation
Indices: 37135242--37135337 Score: 86
Period size: 25 Copynumber: 3.7 Consensus size: 25
37135232 CTTTTTATCA
* * *
37135242 TTTTGATTTTGATTTTGATTTTTCCTT
1 TTTTTATTTT-ATTTT-TTTTTTCATT
37135269 TTCTTT-TTTTATTTTTTTTTTCATT
1 TT-TTTATTTTATTTTTTTTTTCATT
* * *
37135294 TTTTTATTTTCTTTTTTTGATTGATT
1 TTTTTATTTTATTTTTTT-TTTCATT
37135320 TTTTTATTTTGATTTTTT
1 TTTTTATTTT-ATTTTTT
37135338 ATTGATTGAA
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
24 3 0.05
25 21 0.36
26 20 0.34
27 12 0.21
28 2 0.03
ACGTcount: A:0.10, C:0.05, G:0.06, T:0.78
Consensus pattern (25 bp):
TTTTTATTTTATTTTTTTTTTCATT
Found at i:37135297 original size:33 final size:34
Alignment explanation
Indices: 37135260--37135329 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
37135250 TTGATTTTGA
* *
37135260 TTTTTCCTTTTCTTTTTTT-ATT-TTTTTTTTCAT
1 TTTTTCATTTTCTTTTTTTGATTGATTTTTTT-AT
*
37135293 TTTTTTATTTTCTTTTTTTGATTGATTTTTTTAT
1 TTTTTCATTTTCTTTTTTTGATTGATTTTTTTAT
37135327 TTT
1 TTT
37135330 GATTTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 17 0.53
34 8 0.25
35 7 0.22
ACGTcount: A:0.09, C:0.07, G:0.03, T:0.81
Consensus pattern (34 bp):
TTTTTCATTTTCTTTTTTTGATTGATTTTTTTAT
Found at i:37135308 original size:20 final size:19
Alignment explanation
Indices: 37135261--37135309 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
37135251 TGATTTTGAT
*
37135261 TTTTCCTTTTCTTTTTTTA
1 TTTTCTTTTTCTTTTTTTA
*
37135280 TTTTTTTTTTCATTTTTTTA
1 TTTTCTTTTTC-TTTTTTTA
37135300 TTTTCTTTTT
1 TTTTCTTTTT
37135310 TTGATTGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTCTTTTTCTTTTTTTA
Found at i:37135309 original size:13 final size:13
Alignment explanation
Indices: 37135280--37135340 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
37135270 TCTTTTTTTA
37135280 TTTTTT-TTTTCAT
1 TTTTTTATTTTC-T
37135293 TTTTTTATTTTCT
1 TTTTTTATTTTCT
**
37135306 TTTTTTGA-TTGAT
1 TTTTTT-ATTTTCT
**
37135319 TTTTTTATTTTGA
1 TTTTTTATTTTCT
37135332 TTTTTTATT
1 TTTTTTATT
37135341 GATTGAATCT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
12 1 0.03
13 33 0.82
14 6 0.15
ACGTcount: A:0.11, C:0.03, G:0.05, T:0.80
Consensus pattern (13 bp):
TTTTTTATTTTCT
Found at i:37135320 original size:18 final size:18
Alignment explanation
Indices: 37135299--37135333 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37135289 TCATTTTTTT
37135299 ATTTTCTTT-TTTTGATTG
1 ATTTT-TTTATTTTGATTG
37135317 ATTTTTTTATTTTGATT
1 ATTTTTTTATTTTGATT
37135334 TTTTATTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.14, C:0.03, G:0.09, T:0.74
Consensus pattern (18 bp):
ATTTTTTTATTTTGATTG
Found at i:37135320 original size:26 final size:25
Alignment explanation
Indices: 37135281--37135344 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
37135271 CTTTTTTTAT
* * *
37135281 TTTTTTTTTCATTTTTTTATTTTCT
1 TTTTTTATTGATTTTTTTATTTTCA
*
37135306 TTTTTTGATTGATTTTTTTATTTTGA
1 TTTTTT-ATTGATTTTTTTATTTTCA
37135332 TTTTTTATTGATT
1 TTTTTTATTGATT
37135345 GAATCTAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 13 0.38
26 21 0.62
ACGTcount: A:0.12, C:0.03, G:0.06, T:0.78
Consensus pattern (25 bp):
TTTTTTATTGATTTTTTTATTTTCA
Found at i:37144844 original size:3 final size:3
Alignment explanation
Indices: 37144836--37144884 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
37144826 ATAAAGAAGG
37144836 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37144884 A
1 A
37144885 GGATTAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37159452 original size:39 final size:40
Alignment explanation
Indices: 37159221--37159522 Score: 326
Period size: 40 Copynumber: 7.6 Consensus size: 40
37159211 TCCTCGTTCA
* * * * *
37159221 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
37159260 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
37159300 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
37159340 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
37159380 AATGCCTTCGGGACTTAACCCGGATTTACTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
37159420 AAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
37159459 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
37159499 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37159523 CAGCATTCAA
Statistics
Matches: 234, Mismatches: 22, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 66 0.28
40 158 0.68
41 8 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:37159463 original size:119 final size:119
Alignment explanation
Indices: 37159219--37159522 Score: 346
Period size: 119 Copynumber: 2.5 Consensus size: 119
37159209 GCTCCTCGTT
* * * * *
37159219 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
* *
37159284 TTTAACAACTCGCACGAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
66 TTTAACAACTCGCACAAAGGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
* *
37159338 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
* * ** *
37159403 ATTT-ACTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
65 ATTTAAC-AACTCGCACAAAGGCCTTCGGGACATAACCCGG-ATTTAACAACTCGCA
* * * * * * *
37159457 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTAACCCG
37159521 GA
64 GA
37159523 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
118 3 0.02
119 100 0.64
120 54 0.34
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCACAAAGGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
Found at i:37159531 original size:41 final size:41
Alignment explanation
Indices: 37159454--37159531 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37159444 TTTGTATCTC
* * *
37159454 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37159495 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37159532 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37168364 original size:39 final size:40
Alignment explanation
Indices: 37168160--37168380 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
37168150 TTGAATGCTG
* * * * * *
37168160 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
37168200 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
37168240 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
37168280 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
37168320 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
37168359 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
37168381 CTTGAACGAG
Statistics
Matches: 159, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.21
40 118 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:37168402 original size:79 final size:80
Alignment explanation
Indices: 37168235--37168416 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
37168225 GTGCGAGATA
* * *
37168235 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
37168300 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
37168315 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
37168379 CACTT-GAACGAGGAG
66 CA-TTCGAACGAGGAG
* *
37168394 CTATATCC-GGTTAAAT-CCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
37168417 TACGTGATTT
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
77 7 0.08
78 6 0.07
79 44 0.51
80 29 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:37170538 original size:27 final size:26
Alignment explanation
Indices: 37170508--37170574 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
37170498 ATATATAATT
37170508 ATTATAAAATAATTAAATTTTACTTAA
1 ATTATAAAATAATTAAATTTTACTT-A
* * *
37170535 ATTATTAACAT-TTTTAATTTTACTTA
1 ATTA-TAAAATAATTAAATTTTACTTA
* *
37170561 ATTTTATAATAATT
1 ATTATAAAATAATT
37170575 TTTTATTAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
25 4 0.13
26 6 0.19
27 16 0.52
28 5 0.16
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (26 bp):
ATTATAAAATAATTAAATTTTACTTA
Found at i:37170576 original size:27 final size:27
Alignment explanation
Indices: 37170515--37170576 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
37170505 ATTATTATAA
*
37170515 AATAA-TTAAATTTTACTTAAATTATT
1 AATAATTTTAATTTTACTTAAATTATT
* * *
37170541 AACATTTTTAATTTTACTT-AATTTTAT
1 AATAATTTTAATTTTACTTAAATTAT-T
37170568 AATAATTTT
1 AATAATTTT
37170577 TTATTAATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (27 bp):
AATAATTTTAATTTTACTTAAATTATT
Found at i:37172012 original size:58 final size:58
Alignment explanation
Indices: 37171922--37172041 Score: 240
Period size: 58 Copynumber: 2.1 Consensus size: 58
37171912 CTTTGAGATA
37171922 TAGTCAAGAGATAAATGGATTTTGGTAGGTAAGTATGTTCATAAGTTAGCAAATTACT
1 TAGTCAAGAGATAAATGGATTTTGGTAGGTAAGTATGTTCATAAGTTAGCAAATTACT
37171980 TAGTCAAGAGATAAATGGATTTTGGTAGGTAAGTATGTTCATAAGTTAGCAAATTACT
1 TAGTCAAGAGATAAATGGATTTTGGTAGGTAAGTATGTTCATAAGTTAGCAAATTACT
37172038 TAGT
1 TAGT
37172042 TACCGTGAAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.35
Consensus pattern (58 bp):
TAGTCAAGAGATAAATGGATTTTGGTAGGTAAGTATGTTCATAAGTTAGCAAATTACT
Found at i:37178357 original size:16 final size:15
Alignment explanation
Indices: 37178330--37178363 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
37178320 ATAACTAGTA
37178330 TATAATTATATTAAT
1 TATAATTATATTAAT
37178345 TATAATATATATTAAT
1 TATAAT-TATATTAAT
37178361 TAT
1 TAT
37178364 TATCAACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:37183799 original size:383 final size:378
Alignment explanation
Indices: 37183092--37183841 Score: 995
Period size: 383 Copynumber: 2.0 Consensus size: 378
37183082 CTAACTAAAC
* * *
37183092 TCACTTTACAAAGTAGTCCTATTTCAACATCAAGCTTCAAACATCAACACTAACATCCAAAAAGC
1 TCACTTTACAAAATAATCCTATTCCAACATCAAGCTTCAAACATCAACACTAACATCCAAAAAGC
* *
37183157 TTTAAAAACAACAATGGTAACTTTCAAAATCTTTGACAGTTTTATGACATAGTCCTTCGGTTAGC
66 TTTAAAAACAACAATGGTAACTTTCAAAATCTTTGACAGTTTTACGACA-A---CTTAGGTTAGC
* *
37183222 TAGATTATGCTACAACGATATCAAAAACATCAAATTTACTAAAAATGGACATCAAATTCACTTAC
127 TAGATTAAGCTACAACGATATCAAAAACATCAAATTTACCAAAAATGGACATCAAATTCACTTAC
* * *
37183287 ATGCAAGACAAATACTTGGCCAAATTTCTCAAGGTCTACTAATGGTGATTTTCGGTCAAAGAGGG
192 ATGCAAGACAAATACTTGGCCAAATTTCTCAAGGTCTACCAATGGTGATTCTCGATCAAAGAGGG
* * *
37183352 TGAAATAAAGGTGGGTGTTTTGTTTCTTTTGTTTATCTTATTTATTTATTTACTAATTTTCCCTT
257 TGAAATAAAGATGGGTATTTTGTTTCTTTTGTTTATCTTATTTATTTAATTACTAATTTTCCCTT
37183417 CAAAATTATTTCATAATTTCCAATCAAAACATGTGTAAACCATTAACAAAATATTTAA
322 CAAAA-TATTTCATAATTTCCAATCAAAACATGTGTAAACCATTAACAAAATATTTAA
* * * * * * *
37183475 TCACTTTACAAAATAATCCTATTCCAAGATCATGCTTCAAACTTCACCATTAACATCTAAAATGC
1 TCACTTTACAAAATAATCCTATTCCAACATCAAGCTTCAAACATCAACACTAACATCCAAAAAGC
* * *
37183540 TTTAAAAAGAACAATGGTAACTTTCAACATCTTTGATAGTTTTACGAC-A-TTAGGTTAGCTAGA
66 TTTAAAAACAACAATGGTAACTTTCAAAATCTTTGACAGTTTTACGACAACTTAGGTTAGCTAGA
* *
37183603 TTAAGCTACAATGATATCAAAAACAT-AAATTTACCAAAAATGGACATCAAATTCGCTTACATGC
131 TTAAGCTACAACGATATCAAAAACATCAAATTTACCAAAAATGGACATCAAATTCACTTACATGC
** * * * * * * * **
37183667 TTGATACATGCTTGGCCGAATTTCTCAGGGTCTTCCAATGGTGATTCTCTATCAAAGATTGTGAA
196 AAGACAAATACTTGGCCAAATTTCTCAAGGTCTACCAATGGTGATTCTCGATCAAAGAGGGTGAA
*
37183732 ATGAAGAAGATGGGTATTTT-TCTTCTTTTGTTTATGTTTTTTATTTATTTAATTACTAATTTTC
261 AT--A-AAGATGGGTATTTTGT-TTCTTTTGTTTA----TCTTATTTATTTAATTACTAATTTTC
* * *
37183796 CCTTTAAAATATTTCATAATTTCCAATTAGAACATGTGTAAACCAT
318 CCTTCAAAATATTTCATAATTTCCAATCAAAACATGTGTAAACCAT
37183842 CCACCAACAT
Statistics
Matches: 319, Mismatches: 40, Indels: 17
0.85 0.11 0.05
Matches are distributed among these distances:
376 89 0.28
377 37 0.12
378 2 0.01
379 24 0.08
381 1 0.00
382 35 0.11
383 131 0.41
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (378 bp):
TCACTTTACAAAATAATCCTATTCCAACATCAAGCTTCAAACATCAACACTAACATCCAAAAAGC
TTTAAAAACAACAATGGTAACTTTCAAAATCTTTGACAGTTTTACGACAACTTAGGTTAGCTAGA
TTAAGCTACAACGATATCAAAAACATCAAATTTACCAAAAATGGACATCAAATTCACTTACATGC
AAGACAAATACTTGGCCAAATTTCTCAAGGTCTACCAATGGTGATTCTCGATCAAAGAGGGTGAA
ATAAAGATGGGTATTTTGTTTCTTTTGTTTATCTTATTTATTTAATTACTAATTTTCCCTTCAAA
ATATTTCATAATTTCCAATCAAAACATGTGTAAACCATTAACAAAATATTTAA
Found at i:37189994 original size:27 final size:27
Alignment explanation
Indices: 37189935--37189995 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
37189925 AGATTTGGCG
**
37189935 AGTTGGTGTACACTAGAAGGTCTGGCA
1 AGTTGGTGTACACTAGAAGGTCTAACA
* ** *
37189962 AATTGGTGTATGCTAGCAGGTCTAACA
1 AGTTGGTGTACACTAGAAGGTCTAACA
37189989 AGTTGGT
1 AGTTGGT
37189996 ATTCACTAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (27 bp):
AGTTGGTGTACACTAGAAGGTCTAACA
Found at i:37196467 original size:17 final size:17
Alignment explanation
Indices: 37196445--37196497 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
37196435 TTCACAGTCC
37196445 AGTTTTTCACAATCTAT
1 AGTTTTTCACAATCTAT
*
37196462 AG-TTTTCTA-AGTCTAT
1 AGTTTTTC-ACAATCTAT
37196478 AGTTTTTCACAATCTAT
1 AGTTTTTCACAATCTAT
37196495 AGT
1 AGT
37196498 ATCAAATCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.47
Consensus pattern (17 bp):
AGTTTTTCACAATCTAT
Found at i:37209227 original size:21 final size:20
Alignment explanation
Indices: 37209192--37209240 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
37209182 TTCTAACTTG
* *
37209192 TTTGAAAATGGTTAATACATA
1 TTTGAAACTGGTTAACACA-A
*
37209213 TTTGAAACTGTTTAACACAA
1 TTTGAAACTGGTTAACACAA
37209233 -TTGAAACT
1 TTTGAAACT
37209241 TTTTCAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.32
20 1 0.04
21 16 0.64
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (20 bp):
TTTGAAACTGGTTAACACAA
Found at i:37214805 original size:20 final size:20
Alignment explanation
Indices: 37214780--37214842 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
37214770 CACATACGTG
37214780 CCCCTGTTTCTACTTTGGTA
1 CCCCTGTTTCTACTTTGGTA
* ** *
37214800 CCCCTGATTGC-ACTTACGTG
1 CCCCTG-TTTCTACTTTGGTA
*
37214820 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTCTACTTTGGTA
37214840 CCC
1 CCC
37214843 TTGAATACAC
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
19 2 0.06
20 27 0.84
21 3 0.09
ACGTcount: A:0.11, C:0.33, G:0.17, T:0.38
Consensus pattern (20 bp):
CCCCTGTTTCTACTTTGGTA
Found at i:37214903 original size:20 final size:20
Alignment explanation
Indices: 37214880--37214943 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
37214870 TACTTTGATA
*
37214880 CCCCTGGTTGCACATACGTG
1 CCCCTGATTGCACATACGTG
* ** * ** *
37214900 CCCCTGTTTGTGCTTTTGTA
1 CCCCTGATTGCACATACGTG
37214920 CCCCTGATTGCACATACGTG
1 CCCCTGATTGCACATACGTG
37214940 CCCC
1 CCCC
37214944 CGTTTGTTCT
Statistics
Matches: 30, Mismatches: 14, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.12, C:0.36, G:0.20, T:0.31
Consensus pattern (20 bp):
CCCCTGATTGCACATACGTG
Found at i:37214996 original size:40 final size:40
Alignment explanation
Indices: 37214744--37214994 Score: 331
Period size: 40 Copynumber: 6.3 Consensus size: 40
37214734 AATTATACTT
*
37214744 TGTTTGTACTTTGGTACCTCTGATTGCACATACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* *
37214784 TGTTTCTACTTTGGTACCCCTGATTGCACTTACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* * *
37214824 TGTTTGTACTTTGGTACCCTTGAATACACATACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* * *
37214864 TTTTTGTACTTTGATACCCCTGGTTGCACATACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* *
37214904 TGTTTGTGCTTTTGTACCCCTGATTGCACATACGTGCCCC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
* * *** * *
37214944 CGTTTGTTCTTCAATACCCCTGATTGCACATACGTTCACC
1 TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
*
37214984 TGTTTATACTT
1 TGTTTGTACTT
37214995 CAGTAATTTC
Statistics
Matches: 182, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.16, C:0.29, G:0.17, T:0.38
Consensus pattern (40 bp):
TGTTTGTACTTTGGTACCCCTGATTGCACATACGTGCCCC
Found at i:37221098 original size:20 final size:20
Alignment explanation
Indices: 37221075--37221139 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
37221065 CACATACGTG
37221075 CCCCTGTTTGTACTTCGATA
1 CCCCTGTTTGTACTTCGATA
** * * *
37221095 CCCCTAATTGCACTTTC-TTG
1 CCCCTGTTTGTAC-TTCGATA
**
37221115 TGCCTGTTTGTACTTCGATA
1 CCCCTGTTTGTACTTCGATA
37221135 CCCCT
1 CCCCT
37221140 AATTGCACAT
Statistics
Matches: 29, Mismatches: 14, Indels: 4
0.62 0.30 0.09
Matches are distributed among these distances:
19 3 0.10
20 23 0.79
21 3 0.10
ACGTcount: A:0.14, C:0.32, G:0.14, T:0.40
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGATA
Found at i:37221177 original size:80 final size:79
Alignment explanation
Indices: 37221041--37221250 Score: 213
Period size: 79 Copynumber: 2.6 Consensus size: 79
37221031 TTATACCCTT
* * * *
37221041 TTTGTACTTCTATACCCCTGATTACACATACGTGCCCCTGTTTGTACTTCGATACCCCTAATTGC
1 TTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTCGATACCCCT-ACTGC
* * * ** *
37221106 ACTTTCTTGTGCCTG
65 ACATACGTGCCCCCG
* * * *** *
37221121 TTTGTACTTCGATACCCCTAATTGCACATACGTGCCCCTATTTTTATTTTTCTACCCCTGCTGCA
1 TTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTCGATACCCCTACTGCA
37221186 CATACGTGCCCCCG
66 CATACGTGCCCCCG
* * * * *
37221200 TTTGTACTTCGGTATCCCTGATTGCACATACGTGCCCTTGTTTATACTTCG
1 TTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTCG
37221251 GTAATTCAAA
Statistics
Matches: 104, Mismatches: 26, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
79 54 0.52
80 50 0.48
ACGTcount: A:0.17, C:0.30, G:0.14, T:0.38
Consensus pattern (79 bp):
TTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTCGATACCCCTACTGCA
CATACGTGCCCCCG
Found at i:37221253 original size:40 final size:40
Alignment explanation
Indices: 37221036--37221250 Score: 225
Period size: 40 Copynumber: 5.4 Consensus size: 40
37221026 GTAAATTATA
* * *
37221036 CCCTTTTTGTACTTCTATACCCCTGATTACACATACGTGC
1 CCCTGTTTGTACTTCGATACCCCTGATTGCACATACGTGC
* * * * *
37221076 CCCTGTTTGTACTTCGATACCCCTAATTGCACTTTCTTGT
1 CCCTGTTTGTACTTCGATACCCCTGATTGCACATACGTGC
* *
37221116 GCCTGTTTGTACTTCGATACCCCTAATTGCACATACGTGC
1 CCCTGTTTGTACTTCGATACCCCTGATTGCACATACGTGC
* * * *** *
37221156 CCCTATTTTTATTTTTCTACCCCTG-CTGCACATACGTGC
1 CCCTGTTTGTACTTCGATACCCCTGATTGCACATACGTGC
* * *
37221195 CCCCGTTTGTACTTCGGTATCCCTGATTGCACATACGTGC
1 CCCTGTTTGTACTTCGATACCCCTGATTGCACATACGTGC
* *
37221235 CCTTGTTTATACTTCG
1 CCCTGTTTGTACTTCG
37221251 GTAATTCAAA
Statistics
Matches: 140, Mismatches: 34, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
39 30 0.21
40 110 0.79
ACGTcount: A:0.17, C:0.31, G:0.14, T:0.38
Consensus pattern (40 bp):
CCCTGTTTGTACTTCGATACCCCTGATTGCACATACGTGC
Found at i:37221663 original size:13 final size:13
Alignment explanation
Indices: 37221645--37221669 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37221635 TGTGACGCAC
37221645 GGCTATACCACAT
1 GGCTATACCACAT
37221658 GGCTATACCACA
1 GGCTATACCACA
37221670 CGGTCGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20
Consensus pattern (13 bp):
GGCTATACCACAT
Found at i:37228236 original size:28 final size:28
Alignment explanation
Indices: 37228193--37228304 Score: 127
Period size: 28 Copynumber: 4.0 Consensus size: 28
37228183 GGCTAGTCTA
* *
37228193 TCATAGTTCGTCACAAAGGTTTATTCCTT
1 TCATAATTCGCCACAAAGGTTTATT-CTT
* *
37228222 T-ATAATTCACCACAAAGGTGTATTCTT
1 TCATAATTCGCCACAAAGGTTTATTCTT
* * *
37228249 TCGTAATTTGCCACAAAGGTTTATTTTT
1 TCATAATTCGCCACAAAGGTTTATTCTT
* *
37228277 TCATAGTTCGCCACAAAGGCTTATTCTT
1 TCATAATTCGCCACAAAGGTTTATTCTT
37228305 CCCTAATGTG
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
27 4 0.06
28 63 0.93
29 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (28 bp):
TCATAATTCGCCACAAAGGTTTATTCTT
Found at i:37238721 original size:29 final size:29
Alignment explanation
Indices: 37238689--37238756 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
37238679 GTAAAAGTGA
*
37238689 GCCTTTGTGGTTGTTTTTGTTAAAGGAAT
1 GCCTTTGTGGTTGTTTCTGTTAAAGGAAT
*
37238718 GCCTTTGTGATTGTTTCTGTTAAAGGAAT
1 GCCTTTGTGGTTGTTTCTGTTAAAGGAAT
*
37238747 TCCTTTGTGG
1 GCCTTTGTGG
37238757 AAAATCTCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.16, C:0.10, G:0.26, T:0.47
Consensus pattern (29 bp):
GCCTTTGTGGTTGTTTCTGTTAAAGGAAT
Found at i:37238895 original size:29 final size:29
Alignment explanation
Indices: 37238831--37239038 Score: 177
Period size: 29 Copynumber: 7.2 Consensus size: 29
37238821 AAAAAGTACA
* * * *
37238831 TTTGTGGCAATTTTTG-TACAAGGACGCC
1 TTTGTGGCAATCTCTGTTAAAAGGAAGCC
** * * *
37238859 TCGGTGGCTATCTTTGTTAAAAAGAAGCC
1 TTTGTGGCAATCTCTGTTAAAAGGAAGCC
* * * *
37238888 TTTATGGCAATTTCTGTTACAAGGAAACC
1 TTTGTGGCAATCTCTGTTAAAAGGAAGCC
** * *
37238917 TTTGTGGCGGTCTCTATTAAACGGAA-CC
1 TTTGTGGCAATCTCTGTTAAAAGGAAGCC
** *
37238945 TTTGTGGTGATCTCTGTTAAAAGGATGCC
1 TTTGTGGCAATCTCTGTTAAAAGGAAGCC
* *
37238974 TTTGTGGCGATCTCTATTAAAAGGAAGCC
1 TTTGTGGCAATCTCTGTTAAAAGGAAGCC
* * *
37239003 TTTGTGGCAATATCTGTTAAAAGGATGCA
1 TTTGTGGCAATCTCTGTTAAAAGGAAGCC
37239032 TTTGTGG
1 TTTGTGG
37239039 TTATCTCAAT
Statistics
Matches: 142, Mismatches: 36, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
28 35 0.25
29 107 0.75
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (29 bp):
TTTGTGGCAATCTCTGTTAAAAGGAAGCC
Found at i:37239028 original size:58 final size:58
Alignment explanation
Indices: 37238831--37239054 Score: 227
Period size: 58 Copynumber: 3.9 Consensus size: 58
37238821 AAAAAGTACA
* * * ** * * * *
37238831 TTTGTGGCAATTTTTG-TACAAGGACGCCTCGGTGGCTATCTTTGTTAAAAAGAAGCC
1 TTTGTGGCAATTTCTGTTAAAAGGATGCCTTTGTGGCGATCTCTATTAAAAGGAAGCC
* * ** * *
37238888 TTTATGGCAATTTCTGTTACAAGGAAACCTTTGTGGCGGTCTCTATTAAACGGAA-CC
1 TTTGTGGCAATTTCTGTTAAAAGGATGCCTTTGTGGCGATCTCTATTAAAAGGAAGCC
** *
37238945 TTTGTGGTGATCTCTGTTAAAAGGATGCCTTTGTGGCGATCTCTATTAAAAGGAAGCC
1 TTTGTGGCAATTTCTGTTAAAAGGATGCCTTTGTGGCGATCTCTATTAAAAGGAAGCC
* * ** *
37239003 TTTGTGGCAATATCTGTTAAAAGGATGCATTTGTGGTTATCTCAATTAAAAG
1 TTTGTGGCAATTTCTGTTAAAAGGATGCCTTTGTGGCGATCTCTATTAAAAG
37239055 AATACCTTAT
Statistics
Matches: 137, Mismatches: 28, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
57 62 0.45
58 75 0.55
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (58 bp):
TTTGTGGCAATTTCTGTTAAAAGGATGCCTTTGTGGCGATCTCTATTAAAAGGAAGCC
Found at i:37239051 original size:29 final size:29
Alignment explanation
Indices: 37238915--37239054 Score: 156
Period size: 29 Copynumber: 4.9 Consensus size: 29
37238905 TACAAGGAAA
* * *
37238915 CCTTTGTGGCGGTCTCTATTAAACGGA-A
1 CCTTTGTGGCGATCTCTATTAAAAGGATG
* *
37238943 CCTTTGTGGTGATCTCTGTTAAAAGGATG
1 CCTTTGTGGCGATCTCTATTAAAAGGATG
*
37238972 CCTTTGTGGCGATCTCTATTAAAAGGAAG
1 CCTTTGTGGCGATCTCTATTAAAAGGATG
* * *
37239001 CCTTTGTGGCAATATCTGTTAAAAGGATG
1 CCTTTGTGGCGATCTCTATTAAAAGGATG
* ** *
37239030 CATTTGTGGTTATCTCAATTAAAAG
1 CCTTTGTGGCGATCTCTATTAAAAG
37239055 AATACCTTAT
Statistics
Matches: 93, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
28 23 0.25
29 70 0.75
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.35
Consensus pattern (29 bp):
CCTTTGTGGCGATCTCTATTAAAAGGATG
Found at i:37245416 original size:12 final size:12
Alignment explanation
Indices: 37245401--37245431 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
37245391 TTTAGTTGTA
37245401 AATGGAGTTGAG
1 AATGGAGTTGAG
37245413 AATGGAGTTGAG
1 AATGGAGTTGAG
37245425 AATGGAG
1 AATGGAG
37245432 CATGCTATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.42, T:0.23
Consensus pattern (12 bp):
AATGGAGTTGAG
Found at i:37247236 original size:13 final size:13
Alignment explanation
Indices: 37247218--37247244 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37247208 TAATTAATGG
37247218 GTTAAAATTTAAA
1 GTTAAAATTTAAA
37247231 GTTAAAATTTAAA
1 GTTAAAATTTAAA
37247244 G
1 G
37247245 ATGATAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (13 bp):
GTTAAAATTTAAA
Found at i:37247352 original size:43 final size:43
Alignment explanation
Indices: 37247297--37247387 Score: 182
Period size: 43 Copynumber: 2.1 Consensus size: 43
37247287 AAATTTGGAT
37247297 CATAACTTACATAATACATAAATATATATCATATCATAACTTA
1 CATAACTTACATAATACATAAATATATATCATATCATAACTTA
37247340 CATAACTTACATAATACATAAATATATATCATATCATAACTTA
1 CATAACTTACATAATACATAAATATATATCATATCATAACTTA
37247383 CATAA
1 CATAA
37247388 ATATATATCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.34
Consensus pattern (43 bp):
CATAACTTACATAATACATAAATATATATCATATCATAACTTA
Found at i:37247385 original size:27 final size:27
Alignment explanation
Indices: 37247354--37247414 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
37247344 ACTTACATAA
37247354 TACATAAATATATATCATATCATAACT
1 TACATAAATATATATCATATCATAACT
37247381 TACATAAATATATATCATATCATAACT
1 TACATAAATATATATCATATCATAACT
*
37247408 TGCATAA
1 TACATAA
37247415 CTTAATTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (27 bp):
TACATAAATATATATCATATCATAACT
Found at i:37254568 original size:27 final size:27
Alignment explanation
Indices: 37254537--37254714 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37254527 TAAATTGTAC
37254537 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37254564 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37254590 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37254618 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37254646 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37254673 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37254700 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37254715 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37254651 original size:82 final size:81
Alignment explanation
Indices: 37254538--37254693 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37254528 AAATTGTACA
* *
37254538 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37254602 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37254619 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37254684 TGCGAGTTGA
65 TGCGAATTGA
37254694 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37254705 original size:82 final size:81
Alignment explanation
Indices: 37254534--37254714 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37254524 GATTAAATTG
* *
37254534 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37254599 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37254615 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37254679 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37254697 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37254715 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37256781 original size:43 final size:43
Alignment explanation
Indices: 37256725--37256874 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
37256715 AAAAACGCCT
* * *
37256725 CTAAAAGTCATGTTCTTTAACGGCGTTTGTGAGGAAATCTCCG
1 CTAAAGGTCATGTTCTTTAACGGCGTTTGTGAGGAAAGCACCG
* * * * *
37256768 CTAAAGGTGATGTTCTTTAGCGACGTTTGTGGGGAAAGCGCCG
1 CTAAAGGTCATGTTCTTTAACGGCGTTTGTGAGGAAAGCACCG
* * *
37256811 ATAAAGGTCATGTTC-TT-GCGGCGTTTGT-AGGAAAAGCACTG
1 CTAAAGGTCATGTTCTTTAACGGCGTTTGTGAGG-AAAGCACCG
*
37256852 CTAAAGGTCATGTTCTATAACGG
1 CTAAAGGTCATGTTCTTTAACGG
37256875 TATTTTTCCA
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
40 2 0.02
41 31 0.35
42 3 0.03
43 52 0.59
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (43 bp):
CTAAAGGTCATGTTCTTTAACGGCGTTTGTGAGGAAAGCACCG
Found at i:37260336 original size:6 final size:6
Alignment explanation
Indices: 37260327--37260364 Score: 58
Period size: 6 Copynumber: 6.0 Consensus size: 6
37260317 TTTAGAATGA
37260327 TTTATT TTTATT TTTATT TTTATT TTGTAATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TT-T-ATT TTTATT
37260365 AATTTATTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 23 0.77
7 2 0.07
8 5 0.17
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:37262511 original size:17 final size:18
Alignment explanation
Indices: 37262489--37262529 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
37262479 GTTTCTTATT
37262489 TTTTCTATCACCTT-TCA
1 TTTTCTATCACCTTCTCA
*
37262506 TTTTCT-TCATCTTCTCA
1 TTTTCTATCACCTTCTCA
37262523 TTTTCTA
1 TTTTCTA
37262530 ACCTAGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTCTATCACCTTCTCA
Found at i:37265720 original size:49 final size:49
Alignment explanation
Indices: 37265610--37266184 Score: 887
Period size: 49 Copynumber: 12.1 Consensus size: 49
37265600 GAAATGATAG
*
37265610 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGT-T-TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
37265657 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
37265706 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
37265755 TAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
37265804 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
37265853 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
37265900 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
37265945 TAAGGCCTAATGGCCGATGTGATAAATGTGAAA--GT-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
37265991 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
37266038 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
**
37266087 TTGGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * * *
37266134 CAGGGCCGAGTGGCCAACGTGATGGATGTAAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
37266181 TAAG
1 TAAG
37266185 TCCCGAAGGG
Statistics
Matches: 496, Mismatches: 23, Indels: 18
0.92 0.04 0.03
Matches are distributed among these distances:
45 45 0.09
46 43 0.09
47 173 0.35
48 3 0.01
49 232 0.47
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:37265795 original size:96 final size:96
Alignment explanation
Indices: 37265613--37266182 Score: 872
Period size: 96 Copynumber: 6.0 Consensus size: 96
37265603 ATGATAGTAA
*
37265613 GGCCTAATGGCCGATGTGATGAACGTGAAAGTGTT-TATATGTGATAAGGCCTAATGGCCGATGT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGT
37265677 GATGAATGTGAAAGTGTATATATATGTGATAG
66 GATGAATGTGAAAGTG-ATATATATGTGATAG
*
37265709 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCCAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATG
37265774 TGATGAATGTGAAAGTGTATATATATGTGATAG
65 TGATGAATGTGAAAGTG-ATATATATGTGATAG
37265807 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATG
*
37265872 TGATGAATGTGAAAGTG-TATATATGTGATAA
65 TGATGAATGTGAAAGTGATATATATGTGATAG
37265903 GGCCTAATGGCCGATGTGATGAATGTGAAA--G-TATATATGTGATAAGGCCTAATGGCCGATGT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGT
* *
37265965 GATAAATGTGAAAGT--TATATATGTGATAA
66 GATGAATGTGAAAGTGATATATATGTGATAG
*
37265994 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATACGTGATAAGGCCTAATGGCCGATGT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGT
*
37266058 GATGAATGTGAAAGTGTATATATATGTGATTG
66 GATGAATGTGAAAGTG-ATATATATGTGATAG
* * * * * * *
37266090 GGCCTAATGGCCGATGTGATGAATGTGAAAGT-ATATATATGTGACAGGGCCGAGTGGCCAACGT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGT
* * *
37266154 GATGGATGTAAAAGTG-TATAAATGTGATA
66 GATGAATGTGAAAGTGATATATATGTGATA
37266183 AGTCCCGAAG
Statistics
Matches: 446, Mismatches: 20, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
91 44 0.10
92 45 0.10
93 45 0.10
94 12 0.03
96 158 0.35
97 1 0.00
98 141 0.32
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGATATATATGTGATAG
Found at i:37266359 original size:37 final size:37
Alignment explanation
Indices: 37266303--37266381 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37266293 CCGAGCTCTA
* *
37266303 AAGACCCGATGACTACGTGTGCG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTG-GAGATTATGTCCGGGT
*
37266340 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37266377 AAGAC
1 AAGAC
37266382 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37268131 original size:43 final size:43
Alignment explanation
Indices: 37268083--37268185 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
37268073 TTGGTTTTCA
*
37268083 GCACTAAGTGTGCGGGCAATAAGTGTTCATGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
37268126 GCACTAAGTGTGCGGGAAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
37268169 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
37268186 TTGAAATGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:37268202 original size:29 final size:29
Alignment explanation
Indices: 37268167--37268240 Score: 112
Period size: 29 Copynumber: 2.6 Consensus size: 29
37268157 GTTGTGAGAT
* * *
37268167 TGGCACTAAGTGTGCGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTAAAATACA
*
37268196 TGGCACTAAGTGTGCGAGTTTAAAATACA
1 TGGCACTAAGTGTGCGAGCTTAAAATACA
37268225 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37268241 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTAAAATACA
Found at i:37268652 original size:39 final size:40
Alignment explanation
Indices: 37268555--37268694 Score: 144
Period size: 39 Copynumber: 3.5 Consensus size: 40
37268545 ATGATGTCCA
* * * *
37268555 GGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTGGTGCGAGA-T-ACTAAATCCG
* * *
37268595 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTGGTGCGAGATACTAAATCCG
*
37268635 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAATCCG
37268674 GGCTAAGTCCCGAAGAGCATT
1 GGCTAAGTCCCGAAG-GCATT
37268695 CATGCTAGTG
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
39 35 0.41
40 34 0.40
41 15 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAATCCG
Found at i:37268717 original size:40 final size:40
Alignment explanation
Indices: 37268669--37268825 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
37268659 GAGTTACTAA
37268669 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
37268709 ATCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
37268749 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
37268789 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
37268826 CGTGTATTCG
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:37272258 original size:49 final size:49
Alignment explanation
Indices: 37272145--37272575 Score: 711
Period size: 49 Copynumber: 9.0 Consensus size: 49
37272135 GAAATGATAG
* *
37272145 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTG--TATACATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
37272192 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
37272241 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
37272290 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
37272339 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
37272386 TACGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATCTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
37272433 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
37272480 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
37272529 TAGGGCCTAATGGCCGATATGATGAATGTGAAA--GTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
37272576 CAGGTGGCCA
Statistics
Matches: 363, Mismatches: 13, Indels: 16
0.93 0.03 0.04
Matches are distributed among these distances:
45 1 0.00
47 179 0.49
49 183 0.50
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:37272330 original size:96 final size:95
Alignment explanation
Indices: 37272148--37272575 Score: 732
Period size: 96 Copynumber: 4.5 Consensus size: 95
37272138 ATGATAGTAA
* *
37272148 GGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
37272213 ATGAATGTGAAAGTGTATATATATGTGATAG
66 ATGAATGTGAAAGTG-ATATATATGTGATAG
37272244 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATG
37272309 TGATGAATGTGAAAGTGTATATATATGTGATAG
64 TGATGAATGTGAAAGTG-ATATATATGTGATAG
*
37272342 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATACGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
37272407 ATGAATGTGAAAGT-ATATATATCTGATAA
66 ATGAATGTGAAAGTGATATATATGTGATAG
*
37272436 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
37272501 ATGAATGTGAAAGTGTATATATATGTGATAG
66 ATGAATGTGAAAGTG-ATATATATGTGATAG
* *
37272532 GGCCTAATGGCCGATATGATGAATGTGAAAGTATATATATGTGA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
37272576 CAGGTGGCCA
Statistics
Matches: 316, Mismatches: 12, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 90 0.28
96 131 0.41
98 95 0.30
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (95 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGATATATATGTGATAG
Found at i:37272795 original size:37 final size:37
Alignment explanation
Indices: 37272739--37272817 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37272729 CCGAGCTCTA
* *
37272739 AAGACCCGATGACTACGTGTGCG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTG-GAGATTATGTCCGGGT
*
37272776 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37272813 AAGAC
1 AAGAC
37272818 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37282965 original size:16 final size:17
Alignment explanation
Indices: 37282944--37282979 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
37282934 CACATCATCC
37282944 CTCATCCCTCATCC-CT
1 CTCATCCCTCATCCTCT
*
37282960 CTCATCTCTCATCCTCT
1 CTCATCCCTCATCCTCT
37282977 CTC
1 CTC
37282980 TCAACTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.11, C:0.53, G:0.00, T:0.36
Consensus pattern (17 bp):
CTCATCCCTCATCCTCT
Found at i:37294848 original size:185 final size:185
Alignment explanation
Indices: 37294536--37294904 Score: 711
Period size: 185 Copynumber: 2.0 Consensus size: 185
37294526 TTCCAAACTA
37294536 ATGAAAGATCGAGTTGTCAGGGAATGTTTTTCTGACTATTATTAAACATGATGCTAATAAATTAA
1 ATGAAAGATCGAGTTGTCAGGGAATGTTTTTCTGACTATTATTAAACATGATGCTAATAAATTAA
37294601 GTTTAATTAAAGTAATTGTCCTAGTTTATTTATGTTATAATTGTTGCAAATTGTGTTAAATTTTG
66 GTTTAATTAAAGTAATTGTCCTAGTTTATTTATGTTATAATTGTTGCAAATTGTGTTAAATTTTG
37294666 CTAAAATATATTTCATTCATATAGTCTACATATTAGGATAATTTACATTTGGGAC
131 CTAAAATATATTTCATTCATATAGTCTACATATTAGGATAATTTACATTTGGGAC
*
37294721 ATGAAAGATCGAGTTGTCAGGGAATGTTTTTCTGACTATTATTAAGCATGATGCTAATAAATTAA
1 ATGAAAGATCGAGTTGTCAGGGAATGTTTTTCTGACTATTATTAAACATGATGCTAATAAATTAA
37294786 GTTTAATTAAAGTAATTGTCCTAGTTTATTTATGTTATAATTGTTGCAAATTGTGTTAAATTTTG
66 GTTTAATTAAAGTAATTGTCCTAGTTTATTTATGTTATAATTGTTGCAAATTGTGTTAAATTTTG
* *
37294851 CTAAAATCTATTTCATTCATATAGTCTACATATTAGTATAATTTACATTTGGGA
131 CTAAAATATATTTCATTCATATAGTCTACATATTAGGATAATTTACATTTGGGA
37294905 TCATTGCATC
Statistics
Matches: 181, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
185 181 1.00
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (185 bp):
ATGAAAGATCGAGTTGTCAGGGAATGTTTTTCTGACTATTATTAAACATGATGCTAATAAATTAA
GTTTAATTAAAGTAATTGTCCTAGTTTATTTATGTTATAATTGTTGCAAATTGTGTTAAATTTTG
CTAAAATATATTTCATTCATATAGTCTACATATTAGGATAATTTACATTTGGGAC
Found at i:37299904 original size:21 final size:22
Alignment explanation
Indices: 37299875--37299921 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
37299865 CAGAAGGAGT
*
37299875 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
37299897 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
37299918 GAGT
1 GAGT
37299922 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:37302090 original size:67 final size:65
Alignment explanation
Indices: 37302017--37302209 Score: 186
Period size: 67 Copynumber: 3.0 Consensus size: 65
37302007 ATTTTAATAA
*
37302017 ATTTAATATTAAAATTAATTTAATACTTATCTTAATAGTATTTTATTAATTAATATTAAAGTGAT
1 ATTTAATATTAAAATTAATTTAATATTTATCTTAATAGTATTTTATTAATTAATATTAAAGT-AT
37302082 T
65 T
* * *
37302083 ATCTTAATATT-AAATTAAATTTAATATTTATCTTGTAGATA-AATATT-CTAA-TAAT-TT-AA
1 AT-TTAATATTAAAATT-AATTTAATATTTATC-T-TA-ATAGTATTTTATTAATTAATATTAAA
*
37302142 -TAGT
61 GTATT
* * *
37302146 -TTTAATATTAAATTTAATCTAATATTTATCTTAATAAGTATTATATTAATTTAATATTAAAGTA
1 ATTTAATATTAAAATTAATTTAATATTTATCTTAAT-AGTATTTTATTAA-TTAATATTAAAGTA
37302210 ATTAAGTTTA
Statistics
Matches: 102, Mismatches: 11, Indels: 28
0.72 0.08 0.20
Matches are distributed among these distances:
58 2 0.02
59 3 0.03
60 4 0.04
61 25 0.25
62 5 0.05
63 6 0.06
64 3 0.03
65 4 0.04
66 11 0.11
67 26 0.25
68 4 0.04
69 6 0.06
70 3 0.03
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (65 bp):
ATTTAATATTAAAATTAATTTAATATTTATCTTAATAGTATTTTATTAATTAATATTAAAGTATT
Found at i:37302115 original size:29 final size:29
Alignment explanation
Indices: 37302081--37302181 Score: 73
Period size: 29 Copynumber: 3.4 Consensus size: 29
37302071 ATTAAAGTGA
37302081 TTATCTTAATATTAAATTAAATTTAATAT
1 TTATCTTAATATTAAATTAAATTTAATAT
* * *
37302110 TTATCTTGTAGATAAATATTCTAATAATTTAATA-
1 TTATCTT-AATATTAA-A-T-T-A-AATTTAATAT
* * *
37302144 GT-T-TTAATATTAAATTTAATCTAATAT
1 TTATCTTAATATTAAATTAAATTTAATAT
37302171 TTATCTTAATA
1 TTATCTTAATA
37302182 AGTATTATAT
Statistics
Matches: 53, Mismatches: 10, Indels: 18
0.65 0.12 0.22
Matches are distributed among these distances:
26 8 0.15
27 1 0.02
28 2 0.04
29 14 0.26
30 6 0.11
31 6 0.11
32 3 0.06
33 2 0.04
34 2 0.04
35 9 0.17
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (29 bp):
TTATCTTAATATTAAATTAAATTTAATAT
Found at i:37302151 original size:61 final size:58
Alignment explanation
Indices: 37302086--37302201 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 58
37302076 AGTGATTATC
* *
37302086 TTAATATTAAATTAAATTTAATATTTATCTTGTAGATAAATATTCTAATAATTTAATAGTT
1 TTAATATTAAATTAAATCTAATATTTATC-T-TA-ATAAATATTATAATAATTTAATAGTT
* * *
37302147 TTAATATTAAATTTAATCTAATATTTATCTTAATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTAAATCTAATATTTATCTTAATAAATATTATAATAATTTAATA
37302202 TTAAAGTAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 20 0.40
59 2 0.04
60 1 0.02
61 27 0.54
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (58 bp):
TTAATATTAAATTAAATCTAATATTTATCTTAATAAATATTATAATAATTTAATAGTT
Found at i:37302220 original size:58 final size:60
Alignment explanation
Indices: 37302088--37302222 Score: 152
Period size: 58 Copynumber: 2.3 Consensus size: 60
37302078 TGATTATCTT
* * * *
37302088 AATATTAAATTAAATTTAATATTTATCTTGTAGATAAATATTCTAATAATTTAATAGTTTT
1 AATATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTATAATAATTTAATAG-TTA
* *
37302149 AATATTAAATTTAATCTAATATTTATC-T-TA-ATAAGTATTATATTAATTTAATA-TTA
1 AATATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTATAATAATTTAATAGTTA
*
37302205 AAGTAATTAAGTTTAATC
1 AA-T-ATTAAATTTAATC
37302223 ATAGTTGTAT
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
56 4 0.06
57 1 0.02
58 32 0.49
59 2 0.03
60 1 0.02
61 25 0.38
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (60 bp):
AATATTAAATTTAATCTAATATTTATCTTGTAGATAAATATTATAATAATTTAATAGTTA
Found at i:37302254 original size:32 final size:32
Alignment explanation
Indices: 37302199--37302261 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
37302189 TATTAATTTA
37302199 ATATTAAAGTAATTAAGTTTAATCATAGTTGT
1 ATATTAAAGTAATTAAGTTTAATCATAGTTGT
37302231 ATATTAAAGTAATTAAGTTTAATCATAGTTG
1 ATATTAAAGTAATTAAGTTTAATCATAGTTG
37302262 AACTCTCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.43
Consensus pattern (32 bp):
ATATTAAAGTAATTAAGTTTAATCATAGTTGT
Found at i:37305492 original size:18 final size:19
Alignment explanation
Indices: 37305461--37305496 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
37305451 GGTTATATAT
37305461 AAAATATAATATTTAATTG
1 AAAATATAATATTTAATTG
37305480 AAAATAT-ATATTTAATT
1 AAAATATAATATTTAATT
37305497 ATATTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (19 bp):
AAAATATAATATTTAATTG
Found at i:37310323 original size:20 final size:21
Alignment explanation
Indices: 37310285--37310323 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
37310275 GTATTAAATT
* *
37310285 TTAATAATAATATATGAAAAC
1 TTAATAATAATACACGAAAAC
37310306 TTAA-AATAATACACGAAA
1 TTAATAATAATACACGAAA
37310324 GAAAACTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (21 bp):
TTAATAATAATACACGAAAAC
Found at i:37311617 original size:25 final size:26
Alignment explanation
Indices: 37311588--37311659 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
37311578 TTTAGGCCAG
37311588 TTGGGCCAGGGT-ATTGGGCTTAG-GT
1 TTGGGCCAGGGTAATTGGG-TTAGAGT
* * *
37311613 TTGGGCTAGGTTAATTGGGTTAGATT
1 TTGGGCCAGGGTAATTGGGTTAGAGT
* *
37311639 TTGGGCTAGGTTAATTGGGTT
1 TTGGGCCAGGGTAATTGGGTT
37311660 TGTAAAAGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
25 14 0.33
26 28 0.67
ACGTcount: A:0.15, C:0.07, G:0.39, T:0.39
Consensus pattern (26 bp):
TTGGGCCAGGGTAATTGGGTTAGAGT
Found at i:37311631 original size:26 final size:26
Alignment explanation
Indices: 37311600--37311659 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
37311590 GGGCCAGGGT
37311600 ATTGGGCTTAG-GTTTGGGCTAGGTTA
1 ATTGGG-TTAGAGTTTGGGCTAGGTTA
*
37311626 ATTGGGTTAGATTTTGGGCTAGGTTA
1 ATTGGGTTAGAGTTTGGGCTAGGTTA
37311652 ATTGGGTT
1 ATTGGGTT
37311660 TGTAAAAGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 4 0.12
26 28 0.88
ACGTcount: A:0.17, C:0.05, G:0.37, T:0.42
Consensus pattern (26 bp):
ATTGGGTTAGAGTTTGGGCTAGGTTA
Found at i:37312078 original size:44 final size:44
Alignment explanation
Indices: 37312007--37312128 Score: 140
Period size: 44 Copynumber: 2.8 Consensus size: 44
37311997 ACTTGATGCG
* * *
37312007 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAT-TACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATCGACTTCA
* * *
37312051 AT-TCGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCA
1 ATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTATCGACTTCA
* *
37312095 ATCTGCTCCACTGCAACCTCAAGGAGATAAGATT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
37312129 TGCTTCTTCG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
43 4 0.06
44 60 0.92
45 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCGACTTCA
Found at i:37312144 original size:44 final size:44
Alignment explanation
Indices: 37312008--37312215 Score: 131
Period size: 44 Copynumber: 4.7 Consensus size: 44
37311998 CTTGATGCGA
* * * * * *
37312008 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTAT-TACTTTAAT
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGA-CT-TGTTCTCTCAG
* * * * * *
37312053 TC-GCTCCACTACAACTTCAGGGAGATAGGA-TT-ATCGGCTTCAA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTTC-TC-TCAG
* * *
37312096 TCTGCTCCACTGCAACCTCAAGGAGATAAGATTTGCTTCT-TCGG
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTG-TTCTCTCAG
* ** * *
37312140 TCTGCCCCACTG-TGCCTTCAGGGGGATAAGACTTGTTTTCTCAG
1 TCTGCTCCACTGCAACC-TCAGGGAGATAAGACTTGTTCTCTCAG
*
37312184 TCTGCTCCACTGCAACCTTAGGGAGATAAGAC
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGAC
37312216 CTGATGCGAT
Statistics
Matches: 124, Mismatches: 30, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 9 0.07
44 104 0.84
45 6 0.05
47 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTTCTCTCAG
Found at i:37312643 original size:129 final size:129
Alignment explanation
Indices: 37312287--37312710 Score: 609
Period size: 129 Copynumber: 3.3 Consensus size: 129
37312277 CTACAACTTC
* * * * *
37312287 AGGGAGATAGGATCTGTAATTTCTCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
1 AGGGAGACAAGATCTATAATTTCCCAACCTATTCCACTGCTGACCATGGATATAGGACTTGTGGC
* * *
37312352 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGTCGTCTCTGATCTACTCCGCTATTGCTT
66 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGACGTCTTTGATCTGCTCCGCTATTGCTT
* *
37312416 AGGGAGACAAGATCCATAATTT-CCAACCGATTCCACTGCTGACCAAT-GATATAGGACTTGTGG
1 AGGGAGACAAGATCTATAATTTCCCAACCTATTCCACTGCTGACC-ATGGATATAGGACTTGTGG
* * *
37312479 CTTAAATCAGCTTCCTTACTCTTGAAGATAAGATTCGACGTCTTTGATCTGCTCTGCTATTGCTT
65 CTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGACGTCTTTGATCTGCTCCGCTATTGCTT
* ** ** ** *
37312544 AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGGTCATGGAGCTAGGTTTTGTGGT
1 AGGGAGACAAGATCTATAATTTCCCAACCTATTCCACTGCTGACCATGGATATAGGACTTGTGGC
* * *
37312609 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
66 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGACGTCTTTGATCTGCTCCGCTATTGCTT
37312673 AGGGAGACAAGATCTATAATTTCCCAACCTATTCCACT
1 AGGGAGACAAGATCTATAATTTCCCAACCTATTCCACT
37312711 ACAACCGAGG
Statistics
Matches: 262, Mismatches: 30, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
128 117 0.45
129 145 0.55
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.32
Consensus pattern (129 bp):
AGGGAGACAAGATCTATAATTTCCCAACCTATTCCACTGCTGACCATGGATATAGGACTTGTGGC
TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGACGTCTTTGATCTGCTCCGCTATTGCTT
Found at i:37314002 original size:14 final size:13
Alignment explanation
Indices: 37313983--37314013 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
37313973 TTAGCCTTAC
37313983 TTTTTCATTTTTCA
1 TTTTTCA-TTTTCA
37313997 TTTTTCATTTTCA
1 TTTTTCATTTTCA
37314010 TTTT
1 TTTT
37314014 CACATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTCATTTTCA
Found at i:37314015 original size:6 final size:7
Alignment explanation
Indices: 37313983--37314013 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
37313973 TTAGCCTTAC
37313983 TTTTTCA
1 TTTTTCA
37313990 TTTTTCA
1 TTTTTCA
37313997 TTTTTCA
1 TTTTTCA
37314004 -TTTTCA
1 TTTTTCA
37314010 TTTT
1 TTTT
37314014 CACATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTTCA
Found at i:37319049 original size:23 final size:23
Alignment explanation
Indices: 37319019--37319067 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
37319009 ATTATCACAC
37319019 TCAGTGAGTTAGGATGCAACAAT
1 TCAGTGAGTTAGGATGCAACAAT
37319042 TCAGTGAGTTAGGATGCAACAAT
1 TCAGTGAGTTAGGATGCAACAAT
37319065 TCA
1 TCA
37319068 ATCATCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (23 bp):
TCAGTGAGTTAGGATGCAACAAT
Found at i:37324522 original size:21 final size:21
Alignment explanation
Indices: 37324496--37324549 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
37324486 AGTAGTGTTG
*
37324496 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
37324517 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
37324538 GCGGTGAGATTA
1 GCGGTGAGATTA
37324550 AAAACAGCGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.24, C:0.09, G:0.37, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:37325340 original size:112 final size:113
Alignment explanation
Indices: 37325133--37325359 Score: 438
Period size: 112 Copynumber: 2.0 Consensus size: 113
37325123 AGACTATATC
37325133 CCCATACCTATTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCCAGGTAGCA
1 CCCATACCTATTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCCAGGTAGCA
37325198 TATATTACAGTTCTTAATACAATATATGATTACTATCAGTATGTTGTG
66 TATATTACAGTTCTTAATACAATATATGATTACTATCAGTATGTTGTG
*
37325246 CCCATACCT-TTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCTAGGTAGCA
1 CCCATACCTATTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCCAGGTAGCA
37325310 TATATTACAGTTCTTAATACAATATATGATTACTATCAGTATGTTGTG
66 TATATTACAGTTCTTAATACAATATATGATTACTATCAGTATGTTGTG
37325358 CC
1 CC
37325360 ATGATTAAAG
Statistics
Matches: 113, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
112 104 0.92
113 9 0.08
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (113 bp):
CCCATACCTATTCCAAATATATGCCGAAACATGTAATTTACGGTAAAACAAGAGTCCAGGTAGCA
TATATTACAGTTCTTAATACAATATATGATTACTATCAGTATGTTGTG
Found at i:37331814 original size:16 final size:17
Alignment explanation
Indices: 37331768--37331830 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 17
37331758 TACCCCAATG
* *
37331768 ATTTCATTTAGTTTTAT
1 ATTTTATTTATTTTTAT
37331785 ATTTTATTTATTTTTAT
1 ATTTTATTTATTTTTAT
*
37331802 -TTTTATGTTTTTTGTGTATT
1 ATTTTAT-TTATTT-T-TA-T
37331822 ATTTTATTT
1 ATTTTATTT
37331831 TATTATGCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
16 6 0.16
17 20 0.53
18 1 0.03
19 2 0.05
20 3 0.08
21 6 0.16
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.73
Consensus pattern (17 bp):
ATTTTATTTATTTTTAT
Found at i:37333994 original size:49 final size:50
Alignment explanation
Indices: 37333926--37334066 Score: 185
Period size: 49 Copynumber: 2.8 Consensus size: 50
37333916 ATTTGGGTAA
37333926 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAGATG
* * * *
37333976 AGAGGTCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAGATG
** * * * *
37334025 AGAACTCCCATGTAAGACCATATCTTGGATATGTCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCA
37334067 GTACAGGAAA
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 43 0.55
50 35 0.45
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAGATG
Found at i:37343392 original size:50 final size:49
Alignment explanation
Indices: 37343320--37343444 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 49
37343310 TATCCCAGAT
* ** * * *
37343320 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAAAC
1 ATGGTCTTACAGGGGACCTCTCATA-CGATGCCAACGCCATGTCCCAAAC
** * *
37343370 ATGGTCTTAGGGGGGACCTCTCATCACTATGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACAGGGGACCTCTCAT-ACGATGCCAACGCCATGTCCCAAAC
*
37343420 ATGGTCTTACATGGGACCTCTCATA
1 ATGGTCTTACAGGGGACCTCTCATA
37343445 ACCTCAATGA
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
49 1 0.02
50 59 0.97
51 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.26
Consensus pattern (49 bp):
ATGGTCTTACAGGGGACCTCTCATACGATGCCAACGCCATGTCCCAAAC
Found at i:37345187 original size:56 final size:56
Alignment explanation
Indices: 37345095--37345205 Score: 177
Period size: 56 Copynumber: 2.0 Consensus size: 56
37345085 GTTGTTCCTA
* *
37345095 ACACTACCCACACTCGCTACAGATGTAGCCTGAGGTTTTGAGCTCGAATGATGCTG
1 ACACTACCCACACTCGCTACAGATGTAGCCTCAGGTTTTGAGCTCGAATAATGCTG
* * *
37345151 ACACTGCCCACACTCGCTATAGATGTAGCTTCAGGTTTTGAGCTCGAATAATGCT
1 ACACTACCCACACTCGCTACAGATGTAGCCTCAGGTTTTGAGCTCGAATAATGCT
37345206 TTCCTTTATC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (56 bp):
ACACTACCCACACTCGCTACAGATGTAGCCTCAGGTTTTGAGCTCGAATAATGCTG
Found at i:37348220 original size:51 final size:49
Alignment explanation
Indices: 37348128--37348311 Score: 181
Period size: 51 Copynumber: 3.7 Consensus size: 49
37348118 CCGGTTCACA
* ** * * *
37348128 TAGTAGCCTGCATATAGTACTACACTTGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CA-AACTATCTGGTACACG
* * *
37348179 TAGTAGCCTACACATAGTACTACACACGTGATCAAAGCTATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CAAA-CTATCTGGTACACG
* * ** *
37348230 TAGTAGCCTGCACATAGTACTACACATGCGACCTA-TCATTCTGGTGCACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACAAACT-A-TCTGGTACACG
37348280 TAGTAGCCTGCACATAGTACTACACACGTGAC
1 TAGTAGCCTGCACATAGTACTACACACGTGAC
37348312 CATCACTTTC
Statistics
Matches: 110, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 41 0.37
51 67 0.61
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACAAACTATCTGGTACACG
Found at i:37348295 original size:101 final size:102
Alignment explanation
Indices: 37348126--37348310 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
37348116 TACCGGTTCA
* * *
37348126 CATAGTAGCCTGCATATAGTACTACACTTGTGACCATCACTATCCGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTACA
37348191 CATAGTACTACACACGTGATCAAAGCTATCTGGTACG
66 CATAGTACTACACACGTGATCAAAGCTATCTGGTACG
* * * *
37348228 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTGCACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTAC
37348291 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
37348311 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 38 0.51
102 33 0.44
103 4 0.05
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTACA
CATAGTACTACACACGTGATCAAAGCTATCTGGTACG
Found at i:37348333 original size:101 final size:102
Alignment explanation
Indices: 37348121--37348348 Score: 264
Period size: 101 Copynumber: 2.2 Consensus size: 102
37348111 AATGATACCG
* * *
37348121 GTTCACATAGTAGCCTGCATATAGTACTACACTTGTGACCATCACTATCCGATACACGTAGTAGC
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGC
* **
37348186 CTACACATAGTACTACACACGTGATCAAAGCTATCTG
66 CTACACATAGTACTACACACGTGACCAAAGCTATCAC
* * * * *
37348223 GTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTGCACGTAGTAG
1 GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAG
* * *
37348286 CCTGCACATAGTACTACACACGTGACCATCA-CTTTCAC
65 CCTACACATAGTACTACACACGTGACCA-AAGCTATCAC
* * *
37348324 TTTCACATAGTGGCCTACACATAGT
1 GTTCACATAGTAGCCTGCACATAGT
37348349 CCATGCCACA
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
101 64 0.61
102 37 0.35
103 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (102 bp):
GTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGC
CTACACATAGTACTACACACGTGACCAAAGCTATCAC
Found at i:37348451 original size:8 final size:10
Alignment explanation
Indices: 37348421--37348445 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37348411 CAATCGGGAA
37348421 TTTTCTCATT
1 TTTTCTCATT
37348431 TTTTCTCATT
1 TTTTCTCATT
37348441 TTTTC
1 TTTTC
37348446 CTTTTTCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTCTCATT
Found at i:37351095 original size:42 final size:42
Alignment explanation
Indices: 37351015--37351096 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
37351005 CGTTTTCTCT
* *
37351015 ATGCCATAGTCCAACTATGGTCTTACACATATGTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
37351057 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
37351097 CACACCGATG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 34 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:37353650 original size:16 final size:16
Alignment explanation
Indices: 37353629--37353659 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37353619 ATTTTGTTGC
*
37353629 TAATTTTACTTTTTCG
1 TAATTTCACTTTTTCG
37353645 TAATTTCACTTTTTC
1 TAATTTCACTTTTTC
37353660 ACTTTCAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.16, G:0.03, T:0.61
Consensus pattern (16 bp):
TAATTTCACTTTTTCG
Found at i:37353952 original size:51 final size:51
Alignment explanation
Indices: 37353888--37354023 Score: 159
Period size: 50 Copynumber: 2.7 Consensus size: 51
37353878 CCGGTTGACA
* * * *
37353888 TAGTAACCTGCACATAGTACTACACATGTGGCCATAACTATCC-GATGCATG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATAAC-ATCCTGATACACG
* * * *
37353939 TAGTCGCCTGCACATAGTACTACACATGCGACC-TATCATCCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATAACATCCTGATACACG
* *
37353989 TAGTAGCCTCCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
37354024 CACTTTAACT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
49 4 0.06
50 37 0.52
51 30 0.42
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATAACATCCTGATACACG
Found at i:37359693 original size:16 final size:16
Alignment explanation
Indices: 37359672--37359703 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37359662 GTTCTGTTGC
*
37359672 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
37359688 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
37359704 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:37359984 original size:51 final size:50
Alignment explanation
Indices: 37359928--37360071 Score: 164
Period size: 50 Copynumber: 2.9 Consensus size: 50
37359918 ATACCGGTTG
* *
37359928 ACATAGTAACCTCCACATAGTACTACACATGTGATCATCACTATCCGGTAC
1 ACATAGTAGCCTCCACATAGTACTACACATGTGAACATCACT-TCCGGTAC
* * * * * *
37359979 GCATAGTAGCCTGCACATAGTACTACATATGCGACCTATCA-TTCTGGTAC
1 ACATAGTAGCCTCCACATAGTACTACACATGTGAAC-ATCACTTCCGGTAC
* * *
37360029 ACGTAGTAGCCTCCACATAGTACTTCACACGTGAACATCACTT
1 ACATAGTAGCCTCCACATAGTACTACACATGTGAACATCACTT
37360072 TCACTTTCAC
Statistics
Matches: 76, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
49 4 0.05
50 37 0.49
51 31 0.41
52 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (50 bp):
ACATAGTAGCCTCCACATAGTACTACACATGTGAACATCACTTCCGGTAC
Found at i:37361686 original size:268 final size:268
Alignment explanation
Indices: 37361209--37361748 Score: 1071
Period size: 268 Copynumber: 2.0 Consensus size: 268
37361199 AGTTGTCAAG
37361209 AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTTTATATATTTTCAAGATTTTAATAATGGC
1 AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTTTATATATTTTCAAGATTTTAATAATGGC
37361274 TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCCAAATTGAAACC
66 TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCCAAATTGAAACC
37361339 TTCTTGAGGTTGAAGGAAAACCTAACAGATCTTGGTCTTTGCATAGTTTATACAAAGGGACCAAA
131 TTCTTGAGGTTGAAGGAAAACCTAACAGATCTTGGTCTTTGCATAGTTTATACAAAGGGACCAAA
37361404 CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
196 CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
37361469 TAGATTTC
261 TAGATTTC
37361477 AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTTTATATATTTTCAAGATTTTAATAATGGC
1 AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTTTATATATTTTCAAGATTTTAATAATGGC
37361542 TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCCAAATTGAAACC
66 TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCCAAATTGAAACC
37361607 TTCTTGAGGTTGAAGGAAAACCTAACAGATCTTGGTCTTTGCATAGTTTATACAAAGGGACCAAA
131 TTCTTGAGGTTGAAGGAAAACCTAACAGATCTTGGTCTTTGCATAGTTTATACAAAGGGACCAAA
37361672 CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
196 CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
*
37361737 TAGATTTT
261 TAGATTTC
37361745 AGAT
1 AGAT
37361749 TTTTAGGATG
Statistics
Matches: 271, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
268 271 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (268 bp):
AGATGGTCACCTCAAAGAATAGTGGAAGTATTACTTTTATATATTTTCAAGATTTTAATAATGGC
TACGATGAACCCAAAATCTTTATGGGCTCGTGTTATTAAAGGGCTCTGCTCTCCAAATTGAAACC
TTCTTGAGGTTGAAGGAAAACCTAACAGATCTTGGTCTTTGCATAGTTTATACAAAGGGACCAAA
CTGTTAAAATCAGGAACTAAATGAAGCATATGTAATGGTGTAACATCCTAATTATGCATGATAAA
TAGATTTC
Found at i:37369590 original size:19 final size:18
Alignment explanation
Indices: 37369548--37369590 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
37369538 AACGAGCTTG
37369548 TTTTTTAGTATTTTTATA
1 TTTTTTAGTATTTTTATA
37369566 TGTTTTTAGTTCATTTTT-TA
1 T-TTTTTAG-T-ATTTTTATA
37369586 TTTTT
1 TTTTT
37369591 ATTGTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 1 0.05
19 11 0.50
20 4 0.18
21 6 0.27
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.74
Consensus pattern (18 bp):
TTTTTTAGTATTTTTATA
Found at i:37371436 original size:20 final size:20
Alignment explanation
Indices: 37371411--37371466 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
37371401 TTGTACGGGT
37371411 TTGCACTTCGGTGCCTCTGA
1 TTGCACTTCGGTGCCTCTGA
* *
37371431 TTGCACTTTGGTGCCTTTGA
1 TTGCACTTCGGTGCCTCTGA
* *
37371451 TTGCAATTCTGTGCCT
1 TTGCACTTCGGTGCCT
37371467 TTGCTAGCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.11, C:0.25, G:0.23, T:0.41
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTGA
Found at i:37374057 original size:16 final size:16
Alignment explanation
Indices: 37374036--37374066 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37374026 GTTAATTGGT
*
37374036 TAATTTTTAGTTTAAA
1 TAATTTTTAGGTTAAA
37374052 TAATTTTTAGGTTAA
1 TAATTTTTAGGTTAA
37374067 TTTAATTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (16 bp):
TAATTTTTAGGTTAAA
Found at i:37374072 original size:17 final size:16
Alignment explanation
Indices: 37374035--37374073 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
37374025 TGTTAATTGG
*
37374035 TTAATTTTTAGTTTAA
1 TTAATTTTTAGGTTAA
*
37374051 ATAATTTTTAGGTTAA
1 TTAATTTTTAGGTTAA
37374067 TTTAATT
1 -TTAATT
37374074 CATTGATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (16 bp):
TTAATTTTTAGGTTAA
Done.