Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 123 of 214
Found at i:37384668 original size:19 final size:19
Alignment explanation
Indices: 37384644--37384681 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
37384634 GGCCCATTTC
37384644 ATTCTCCAAATTCCTTAGA
1 ATTCTCCAAATTCCTTAGA
*
37384663 ATTCTCCAATTTCCTTAGA
1 ATTCTCCAAATTCCTTAGA
37384682 GTGGCGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.39
Consensus pattern (19 bp):
ATTCTCCAAATTCCTTAGA
Found at i:37390577 original size:26 final size:26
Alignment explanation
Indices: 37390548--37390607 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
37390538 GAAAAGTTGT
*
37390548 TAAATGACCGTAATGCCCCT-AGAGGG
1 TAAATGACCATAATGCCCCTCA-AGGG
* **
37390574 TAAATGACTATTTTGCCCCTCAAGGG
1 TAAATGACCATAATGCCCCTCAAGGG
37390600 TAAATGAC
1 TAAATGAC
37390608 TGATTTGTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (26 bp):
TAAATGACCATAATGCCCCTCAAGGG
Found at i:37390608 original size:26 final size:27
Alignment explanation
Indices: 37390561--37390613 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
37390551 ATGACCGTAA
37390561 TGCCCCTAGAGGGTAAATGACT-ATTT
1 TGCCCCTAGAGGGTAAATGACTGATTT
37390587 TGCCCCTCA-AGGGTAAATGACTGATTT
1 TGCCCCT-AGAGGGTAAATGACTGATTT
37390614 GTGCTATGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (27 bp):
TGCCCCTAGAGGGTAAATGACTGATTT
Found at i:37391914 original size:6 final size:6
Alignment explanation
Indices: 37391886--37391925 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
37391876 TATTTAACCC
*
37391886 AAATT- AAATT- AAATT- AGATTA AAATTA AAATTA AAATTA A
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA A
37391926 TTATGTTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 14 0.44
6 18 0.56
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (6 bp):
AAATTA
Found at i:37392190 original size:20 final size:21
Alignment explanation
Indices: 37392165--37392210 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
37392155 TTTTCGATAA
*
37392165 GAATTTTA-CCAAAAATGCGT
1 GAATTTGAGCCAAAAATGCGT
**
37392185 GAATTTGAGTTAAAAATGCGT
1 GAATTTGAGCCAAAAATGCGT
37392206 GAATT
1 GAATT
37392211 CGTGTTTCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.33
Consensus pattern (21 bp):
GAATTTGAGCCAAAAATGCGT
Found at i:37402384 original size:6 final size:6
Alignment explanation
Indices: 37402369--37402404 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
37402359 TCTATTTCAC
37402369 TTTTTA -TTTTA TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA T
37402405 CTCATATCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:37403280 original size:215 final size:215
Alignment explanation
Indices: 37402909--37403554 Score: 1283
Period size: 215 Copynumber: 3.0 Consensus size: 215
37402899 GTTTAGCCAT
37402909 AGAAGCTCGAGAATCGAACTCATCCGTTAGAAATTGGAATTAGAATCCTGATTCGATTTACAAAG
1 AGAAGCTCGAGAATCGAACTCATCCGTTAGAAATTGGAATTAGAATCCTGATTCGATTTACAAAG
37402974 TTAGGTGTGGTGATTTATTTTGATAAAATTAATTAATATTAGATTTAATCAAGATAAAATTATAT
66 TTAGGTGTGGTGATTTATTTTGATAAAATTAATTAATATTAGATTTAATCAAGATAAAATTATAT
37403039 ATGAGAAATATTTAATTAACGTTTAAATAAATTTCTAAAAGGTGTACTTGGGCGAATATGTAAAA
131 ATGAGAAATATTTAATTAACGTTTAAATAAATTTCTAAAAGGTGTACTTGGGCGAATATGTAAAA
37403104 GTATTCGTTGGATTCGTAAA
196 GTATTCGTTGGATTCGTAAA
*
37403124 AGAAGCTCGAGAATCGAACTCATCCGTTAGAAATTGGAATTAGAATCCTGATTTGATTTACAAAG
1 AGAAGCTCGAGAATCGAACTCATCCGTTAGAAATTGGAATTAGAATCCTGATTCGATTTACAAAG
37403189 TTAGGTGTGGTGATTTATTTTGATAAAATTAATTAATATTAGATTTAATCAAGATAAAATTATAT
66 TTAGGTGTGGTGATTTATTTTGATAAAATTAATTAATATTAGATTTAATCAAGATAAAATTATAT
37403254 ATGAGAAATATTTAATTAACGTTTAAATAAATTTCTAAAAGGTGTACTTGGGCGAATATGTAAAA
131 ATGAGAAATATTTAATTAACGTTTAAATAAATTTCTAAAAGGTGTACTTGGGCGAATATGTAAAA
37403319 GTATTCGTTGGATTCGTAAA
196 GTATTCGTTGGATTCGTAAA
37403339 AGAAGCTCGAGAATCGAACTCATCCGTTAGAAATTGGAATTAGAATCCTGATTCGATTTACAAAG
1 AGAAGCTCGAGAATCGAACTCATCCGTTAGAAATTGGAATTAGAATCCTGATTCGATTTACAAAG
37403404 TTAGGTGTGGTGATTTATTTTGATAAAATTAATTAATATTAGATTTAATCAAGATAAAATTATAT
66 TTAGGTGTGGTGATTTATTTTGATAAAATTAATTAATATTAGATTTAATCAAGATAAAATTATAT
37403469 ATGAGAAATATTTAATTAACGTTTAAATAAATTTCTAAAAGGTGTACTTGGGCGAATATGTAAAA
131 ATGAGAAATATTTAATTAACGTTTAAATAAATTTCTAAAAGGTGTACTTGGGCGAATATGTAAAA
37403534 GTATTCGTTGGATTCGTAAA
196 GTATTCGTTGGATTCGTAAA
37403554 A
1 A
37403555 CTCGGGAAAG
Statistics
Matches: 429, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
215 429 1.00
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (215 bp):
AGAAGCTCGAGAATCGAACTCATCCGTTAGAAATTGGAATTAGAATCCTGATTCGATTTACAAAG
TTAGGTGTGGTGATTTATTTTGATAAAATTAATTAATATTAGATTTAATCAAGATAAAATTATAT
ATGAGAAATATTTAATTAACGTTTAAATAAATTTCTAAAAGGTGTACTTGGGCGAATATGTAAAA
GTATTCGTTGGATTCGTAAA
Found at i:37430716 original size:20 final size:20
Alignment explanation
Indices: 37430691--37430761 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
37430681 GGCAGCTTGA
37430691 CCACAATACTGGTGGTTTGT
1 CCACAATACTGGTGGTTTGT
* *
37430711 CCACAATTCTGGTAGTTTGT
1 CCACAATACTGGTGGTTTGT
** * *
37430731 CTGCAATAACTGGAGGCTTGT
1 CCACAAT-ACTGGTGGTTTGT
*
37430752 CCATAATACT
1 CCACAATACT
37430762 AGCAGTTTAT
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 26 0.67
21 13 0.33
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (20 bp):
CCACAATACTGGTGGTTTGT
Found at i:37430753 original size:41 final size:40
Alignment explanation
Indices: 37430694--37430798 Score: 120
Period size: 41 Copynumber: 2.6 Consensus size: 40
37430684 AGCTTGACCA
* * * * *
37430694 CAATACTGGTGGTTTGTCCACAATTCTGGTAGTTTGTCTG
1 CAATACTGGTGGCTTGTCCACAATACTAGCAGTTTATCTG
* *
37430734 CAATAACTGGAGGCTTGTCCATAATACTAGCAGTTTATCTG
1 CAAT-ACTGGTGGCTTGTCCACAATACTAGCAGTTTATCTG
*
37430775 CAATTACTTGTGGCTTGTCCACAA
1 CAA-TACTGGTGGCTTGTCCACAA
37430799 CTTGTTTGTT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
40 4 0.08
41 48 0.91
42 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (40 bp):
CAATACTGGTGGCTTGTCCACAATACTAGCAGTTTATCTG
Found at i:37431729 original size:22 final size:22
Alignment explanation
Indices: 37431687--37431729 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
37431677 TAGGATTTAT
* *
37431687 AGTTTAGTTCTATTTTCTTTTC
1 AGTTTAGTCCTATTTTATTTTC
37431709 AGTTTAGTCCT-TTTGTATTTT
1 AGTTTAGTCCTATTT-TATTTT
37431730 TGTTACTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.14, C:0.12, G:0.12, T:0.63
Consensus pattern (22 bp):
AGTTTAGTCCTATTTTATTTTC
Found at i:37432747 original size:5 final size:5
Alignment explanation
Indices: 37432737--37432762 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37432727 ATAGATACCA
37432737 AATTT AATTT AATTT AATTT AATTT A
1 AATTT AATTT AATTT AATTT AATTT A
37432763 TTAATTTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
AATTT
Found at i:37434212 original size:26 final size:25
Alignment explanation
Indices: 37434173--37434231 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 25
37434163 CAAAATAACA
37434173 TTTCCTTTGAACACTTACCATTTCG
1 TTTCCTTTGAACACTTACCATTTCG
*
37434198 TTTCCTTCTGAACACTTACCATTTTG
1 TTTCCTT-TGAACACTTACCATTTCG
37434224 TTTCCTTT
1 TTTCCTTT
37434232 TCATACCCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 8 0.25
26 24 0.75
ACGTcount: A:0.17, C:0.27, G:0.07, T:0.49
Consensus pattern (25 bp):
TTTCCTTTGAACACTTACCATTTCG
Found at i:37439427 original size:53 final size:53
Alignment explanation
Indices: 37439332--37439433 Score: 123
Period size: 53 Copynumber: 1.9 Consensus size: 53
37439322 CATGGAATAG
* **** *
37439332 CACATGGCCTGCGACATGGCCATGTGTTGTAAGTCAGAGAGTTACACAGTCTA
1 CACATGGCCTACGACATGGCCATGTGACCCAACTCAGAGAGTTACACAGTCTA
* * *
37439385 CACATGGCCTACGACATGGCCGTGTGACCCAACTCAGTGAGTTATACAG
1 CACATGGCCTACGACATGGCCATGTGACCCAACTCAGAGAGTTACACAG
37439434 CTAGAGATAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 40 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.23
Consensus pattern (53 bp):
CACATGGCCTACGACATGGCCATGTGACCCAACTCAGAGAGTTACACAGTCTA
Found at i:37444818 original size:19 final size:21
Alignment explanation
Indices: 37444793--37444838 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
37444783 TTAAATTTTA
37444793 ATTTTTGG-ATGTT-TTTATTT
1 ATTTTTGGAAT-TTGTTTATTT
37444813 -TTTTTGGAATTTGTTTATTT
1 ATTTTTGGAATTTGTTTATTT
37444833 ATTTTT
1 ATTTTT
37444839 TGCTTTAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 9 0.39
20 9 0.39
21 5 0.22
ACGTcount: A:0.15, C:0.00, G:0.13, T:0.72
Consensus pattern (21 bp):
ATTTTTGGAATTTGTTTATTT
Found at i:37446625 original size:25 final size:25
Alignment explanation
Indices: 37446597--37446671 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
37446587 GCATGCTGAT
* *
37446597 ACGAGCTATGAATCGGTATGCTCTC
1 ACGAGCTATAAATCGGTAAGCTCTC
*
37446622 ACGAGCTATAAATTGGTAAGCTCAT-
1 ACGAGCTATAAATCGGTAAGCTC-TC
* *
37446647 ATGAGCTA-AAATTGGTAAGCTCTC
1 ACGAGCTATAAATCGGTAAGCTCTC
37446671 A
1 A
37446672 ATAGTTGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
23 1 0.02
24 15 0.34
25 27 0.61
26 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (25 bp):
ACGAGCTATAAATCGGTAAGCTCTC
Found at i:37446663 original size:24 final size:24
Alignment explanation
Indices: 37446624--37446701 Score: 97
Period size: 24 Copynumber: 3.2 Consensus size: 24
37446614 ATGCTCTCAC
37446624 GAGCTATAAATTGGTAAGCTCATAT
1 GAGCTA-AAATTGGTAAGCTCATAT
37446649 GAGCTAAAATTGGTAAGCTC-TCAAT
1 GAGCTAAAATTGGTAAGCTCAT--AT
* *
37446674 -AGTTGAAATTGGTAAGCTCATAT
1 GAGCTAAAATTGGTAAGCTCATAT
37446697 GAGCT
1 GAGCT
37446702 GTGGTGTACC
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
23 3 0.07
24 34 0.74
25 9 0.20
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (24 bp):
GAGCTAAAATTGGTAAGCTCATAT
Found at i:37447856 original size:27 final size:26
Alignment explanation
Indices: 37447826--37447890 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
37447816 ATATATAATT
37447826 ATTATATAATAATTAAATTTTACTTAA
1 ATTATATAATAATTAAATTTTACTT-A
* * *
37447853 ATTAT-TAACACGTTTAATTTTACTTA
1 ATTATATAATA-ATTAAATTTTACTTA
*
37447879 ATTTTATAATAA
1 ATTATATAATAA
37447891 ATTTAGATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (26 bp):
ATTATATAATAATTAAATTTTACTTA
Found at i:37452823 original size:89 final size:89
Alignment explanation
Indices: 37452672--37452845 Score: 294
Period size: 89 Copynumber: 2.0 Consensus size: 89
37452662 TCTCAAGGTG
*
37452672 AGACTATTACTATTTCCTCGATGGATACTCGGGGTATAATCAGATTACAATAGCATTGGAAGATC
1 AGACTATTACTATTTCCTCAATGGATACTCGGGGTATAATCAGATTACAATAGCATTGGAAGATC
**
37452737 AACACAATTCAACATTCACCCCTT
66 AACACAAGACAACATTCACCCCTT
* * *
37452761 AGACTATTACTATTTTCTCAATGGATACTCGGGGTATAATCAGATTACATTAGGATTGGAAGATC
1 AGACTATTACTATTTCCTCAATGGATACTCGGGGTATAATCAGATTACAATAGCATTGGAAGATC
37452826 AACACAAGACAACATTCACC
66 AACACAAGACAACATTCACC
37452846 TGCCCATACG
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 79 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (89 bp):
AGACTATTACTATTTCCTCAATGGATACTCGGGGTATAATCAGATTACAATAGCATTGGAAGATC
AACACAAGACAACATTCACCCCTT
Found at i:37455532 original size:16 final size:15
Alignment explanation
Indices: 37455505--37455538 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
37455495 ATAACTAGTA
*
37455505 TATAATTATATTTAT
1 TATAATTATATTAAT
37455520 TATAATATATATTAAT
1 TATAAT-TATATTAAT
37455536 TAT
1 TAT
37455539 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:37460174 original size:42 final size:42
Alignment explanation
Indices: 37460115--37460199 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
37460105 TTATCACATT
*
37460115 TGCTTATTAAAATTTGTTTAATCGGTTGAATTGACATAGAGA
1 TGCTTATTAAAATTTGTTTAATCAGTTGAATTGACATAGAGA
* *
37460157 TGCTTATTAAAATTTGTTTAATTAGTTTAATTGACATAGAGA
1 TGCTTATTAAAATTTGTTTAATCAGTTGAATTGACATAGAGA
37460199 T
1 T
37460200 ATAGTCAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.44
Consensus pattern (42 bp):
TGCTTATTAAAATTTGTTTAATCAGTTGAATTGACATAGAGA
Found at i:37466192 original size:20 final size:20
Alignment explanation
Indices: 37466164--37466202 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37466154 AAGTGATTTT
37466164 CTTTATTTT-TGTTGTGTTTC
1 CTTTATTTTGTGTT-TGTTTC
*
37466184 CTTTTTTTTGTGTTTGTTT
1 CTTTATTTTGTGTTTGTTT
37466203 TTACGCAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.03, C:0.08, G:0.15, T:0.74
Consensus pattern (20 bp):
CTTTATTTTGTGTTTGTTTC
Found at i:37467483 original size:14 final size:14
Alignment explanation
Indices: 37467464--37467493 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37467454 TGTGTGCGTG
*
37467464 TTTTATTTTGTTTC
1 TTTTATCTTGTTTC
37467478 TTTTATCTTGTTTC
1 TTTTATCTTGTTTC
37467492 TT
1 TT
37467494 GAGGACAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.10, G:0.07, T:0.77
Consensus pattern (14 bp):
TTTTATCTTGTTTC
Found at i:37469693 original size:25 final size:23
Alignment explanation
Indices: 37469665--37469711 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
37469655 AACCATTCAT
*
37469665 TCTTCACTTCTCTATCACTTTTCTC
1 TCTTCACTGCTCT-TCA-TTTTCTC
*
37469690 TCTTCAGTGCTCTTCATTTTCT
1 TCTTCACTGCTCTTCATTTTCT
37469712 TCCCCACTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.11, C:0.32, G:0.04, T:0.53
Consensus pattern (23 bp):
TCTTCACTGCTCTTCATTTTCTC
Found at i:37472155 original size:50 final size:50
Alignment explanation
Indices: 37472071--37472355 Score: 417
Period size: 50 Copynumber: 5.7 Consensus size: 50
37472061 ATTTGGGTAA
* *
37472071 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
* *
37472121 AGAGGTCCCATGTAAGACCATGTCTAGGATATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
37472171 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
* *
37472221 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
** * * * * *
37472271 AGAGGTCCCCCGTAAGACCATGCCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
** *
37472321 AGAACATCCCATGTAAGACCATGTCTAAGACATGG
1 AG-AGGTCCCATGTAAGACCATGTCTAGGACATGG
37472356 TTTTGGCATG
Statistics
Matches: 214, Mismatches: 20, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
50 189 0.88
51 25 0.12
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
Found at i:37482400 original size:22 final size:23
Alignment explanation
Indices: 37482366--37482410 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
37482356 CAACCAAACA
37482366 TCCAACTAAACA-TCATTATAAG
1 TCCAACTAAACAGTCATTATAAG
* *
37482388 TCCACCTATACATGTCATTATAA
1 TCCAACTAAACA-GTCATTATAA
37482411 CCTTGGACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
24 9 0.47
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.31
Consensus pattern (23 bp):
TCCAACTAAACAGTCATTATAAG
Found at i:37487772 original size:20 final size:21
Alignment explanation
Indices: 37487730--37487772 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
37487720 GAATCTTTCC
**
37487730 TCCCTTTTCTTCTTTCTCCTT
1 TCCCTTTTCTTCTCCCTCCTT
*
37487751 TCCCTTTT-TTCTCCCTCTTT
1 TCCCTTTTCTTCTCCCTCCTT
37487771 TC
1 TC
37487773 ACTCCTTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (21 bp):
TCCCTTTTCTTCTCCCTCCTT
Found at i:37487909 original size:17 final size:15
Alignment explanation
Indices: 37487879--37487920 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
37487869 GACACCATCA
37487879 TTCATTTTTTTTCTT
1 TTCATTTTTTTTCTT
37487894 TTCATCTTTTTCTTCTT
1 TTCAT-TTTTT-TTCTT
*
37487911 TAC-TTTTTTT
1 TTCATTTTTTT
37487921 CTCTCTTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 1 0.04
15 10 0.42
16 6 0.25
17 7 0.29
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (15 bp):
TTCATTTTTTTTCTT
Found at i:37490491 original size:50 final size:50
Alignment explanation
Indices: 37490423--37490560 Score: 159
Period size: 50 Copynumber: 2.8 Consensus size: 50
37490413 ACTGCCAATC
* * ** * * *
37490423 CCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTACCAACG
** *
37490473 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTACCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTACCAACG
* * *
37490523 CCATGTCCCAAACATGGTCCTACATAGGACCTCTCATA
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
37490561 ATCTCAATGA
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 72 1.00
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.25
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTACCAACG
Found at i:37492651 original size:6 final size:6
Alignment explanation
Indices: 37492640--37492682 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
37492630 CATTTTTAAG
37492640 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
37492683 GGAGAAAACC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.67
Consensus pattern (6 bp):
TCATTT
Found at i:37496050 original size:38 final size:39
Alignment explanation
Indices: 37495993--37496068 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 39
37495983 CCAACCCAAT
*
37495993 CCAATTACCCAACCCAATAAAACTAAAACTAAAGTCTAC
1 CCAATTACCCAACCCAATAAAAATAAAACTAAAGTCTAC
*
37496032 CCAATTA-CCAACCTAATAAAAATAAAACTAAAGTCTA
1 CCAATTACCCAACCCAATAAAAATAAAACTAAAGTCTA
37496069 ACTCTTAAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 28 0.80
39 7 0.20
ACGTcount: A:0.51, C:0.26, G:0.03, T:0.20
Consensus pattern (39 bp):
CCAATTACCCAACCCAATAAAAATAAAACTAAAGTCTAC
Found at i:37496256 original size:37 final size:37
Alignment explanation
Indices: 37496200--37496274 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
37496190 TGTTAATTTC
* *
37496200 AAGAATTATATAATGTTTTTAATTATGTAGTGGTTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTGATTCA
* *
37496237 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTGATTCA
37496274 A
1 A
37496275 TTCGAGTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (37 bp):
AAGAATTATATAATATTTTTAATTATGTAGTGATTCA
Found at i:37505423 original size:3 final size:3
Alignment explanation
Indices: 37505410--37505440 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
37505400 GAATATGAGC
*
37505410 AAG ATG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
37505441 TAAAGGAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:37511986 original size:31 final size:31
Alignment explanation
Indices: 37511928--37511987 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
37511918 GTCTTTTGAA
* *
37511928 AATATTTACAAAAAGAGACATCTAATTTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTTT
*
37511959 AATATTTACAAACAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
37511988 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (31 bp):
AATATTTACAAAAAGAGACACCAAATTTTTT
Found at i:37517597 original size:27 final size:27
Alignment explanation
Indices: 37517566--37517731 Score: 183
Period size: 27 Copynumber: 6.1 Consensus size: 27
37517556 TAAATTGTAC
37517566 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37517593 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37517619 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37517647 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
37517675 AGCACTAAGTGTGCGATTTGA-TTTCGT
1 AGCACTAAGTGTGCGATTTGACTAT-GT
* * *
37517702 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
37517729 AGC
1 AGC
37517732 GCTGTGTGTG
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 90 0.77
28 25 0.21
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37517707 original size:55 final size:54
Alignment explanation
Indices: 37517566--37517720 Score: 174
Period size: 55 Copynumber: 2.9 Consensus size: 54
37517556 TAAATTGTAC
* **
37517566 AGCACTAAGTGTGCGATTTGACTAT-GTTGCACTAAGTGTGCGA-AATGAATATG
1 AGCACTAAGTGTGCGATTTGACTTTCG-TGCACTAAGTGTGCGAGTTTGAATATG
* * * *
37517619 ATGCACTAAGTGTGCGAATTGACCATGCG-GCACTAAGTGTGCGAGTTTGACTATG
1 A-GCACTAAGTGTGCGATTTGA-CTTTCGTGCACTAAGTGTGCGAGTTTGAATATG
37517674 TAGCACTAAGTGTGCGATTTGA-TTTCGTAGCACTAAGTGTGCGAGTT
1 -AGCACTAAGTGTGCGATTTGACTTTCGT-GCACTAAGTGTGCGAGTT
37517721 GATTATATAG
Statistics
Matches: 85, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
53 4 0.05
54 34 0.40
55 45 0.53
56 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTTTCGTGCACTAAGTGTGCGAGTTTGAATATG
Found at i:37534444 original size:27 final size:27
Alignment explanation
Indices: 37534413--37534590 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37534403 TAAATTGTAC
37534413 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37534440 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37534466 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37534494 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37534522 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37534549 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37534576 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37534591 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37534527 original size:82 final size:81
Alignment explanation
Indices: 37534414--37534569 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37534404 AAATTGTACA
* *
37534414 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37534478 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37534495 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37534560 TGCGAGTTGA
65 TGCGAATTGA
37534570 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37534581 original size:82 final size:81
Alignment explanation
Indices: 37534410--37534590 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37534400 GATTAAATTG
* *
37534410 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37534475 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37534491 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37534555 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37534573 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37534591 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37542494 original size:27 final size:27
Alignment explanation
Indices: 37542463--37542640 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37542453 TAAATTGTAC
37542463 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37542490 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37542516 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37542544 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37542572 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37542599 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37542626 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37542641 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37542577 original size:82 final size:81
Alignment explanation
Indices: 37542464--37542619 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37542454 AAATTGTACA
* *
37542464 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37542528 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37542545 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37542610 TGCGAGTTGA
65 TGCGAATTGA
37542620 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37542631 original size:82 final size:81
Alignment explanation
Indices: 37542460--37542640 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37542450 GATTAAATTG
* *
37542460 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37542525 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37542541 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37542605 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37542623 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37542641 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37545842 original size:15 final size:15
Alignment explanation
Indices: 37545822--37545850 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37545812 TTAAAATTGA
37545822 ACAGAAAAATTAATC
1 ACAGAAAAATTAATC
37545837 ACAGAAAAATTAAT
1 ACAGAAAAATTAAT
37545851 TAAGTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.21
Consensus pattern (15 bp):
ACAGAAAAATTAATC
Found at i:37555122 original size:9 final size:9
Alignment explanation
Indices: 37555104--37555193 Score: 99
Period size: 9 Copynumber: 9.8 Consensus size: 9
37555094 ACAACCAAAA
37555104 TGAGAGAGT
1 TGAGAGAGT
*
37555113 TGAGAAAGT
1 TGAGAGAGT
* *
37555122 TGAGAAATT
1 TGAGAGAGT
*
37555131 TGAGAGACT
1 TGAGAGAGT
* *
37555140 TGAAAGGGTT
1 TGAGAGAG-T
37555150 TGAGAGAGT
1 TGAGAGAGT
37555159 TGAGAGAGT
1 TGAGAGAGT
37555168 TGAGAGAGTT
1 TGAGAGAG-T
*
37555178 TGAAAGAGT
1 TGAGAGAGT
37555187 TGAGAGA
1 TGAGAGA
37555194 AAGATGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
9 53 0.78
10 15 0.22
ACGTcount: A:0.37, C:0.01, G:0.38, T:0.24
Consensus pattern (9 bp):
TGAGAGAGT
Found at i:37555153 original size:19 final size:18
Alignment explanation
Indices: 37555108--37555193 Score: 75
Period size: 19 Copynumber: 4.7 Consensus size: 18
37555098 CCAAAATGAG
* *
37555108 AGAGTTGAGAAAGTTGAGA
1 AGAGTTGAGAGACTTGA-A
*
37555127 A-ATTTGAGAGACTTGAA
1 AGAGTTGAGAGACTTGAA
* * *
37555144 AGGGTTTGAGAGAGTTGAG
1 AGAG-TTGAGAGACTTGAA
*
37555163 AGAGTTGAGAGAGTTTGAA
1 AGAGTTGAGAGA-CTTGAA
37555182 AGAGTTGAGAGA
1 AGAGTTGAGAGA
37555194 AAGATGTGAA
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
17 2 0.04
18 20 0.37
19 32 0.59
ACGTcount: A:0.37, C:0.01, G:0.37, T:0.24
Consensus pattern (18 bp):
AGAGTTGAGAGACTTGAA
Found at i:37555161 original size:28 final size:28
Alignment explanation
Indices: 37555134--37555193 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
37555124 AGAAATTTGA
*
37555134 GAGACTTGAAAGGGTTTGAGAGAGTTGA
1 GAGACTTGAAAGAGTTTGAGAGAGTTGA
* * *
37555162 GAGAGTTGAGAGAGTTTGAAAGAGTTGA
1 GAGACTTGAAAGAGTTTGAGAGAGTTGA
37555190 GAGA
1 GAGA
37555194 AAGATGTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.35, C:0.02, G:0.40, T:0.23
Consensus pattern (28 bp):
GAGACTTGAAAGAGTTTGAGAGAGTTGA
Found at i:37555162 original size:37 final size:37
Alignment explanation
Indices: 37555108--37555193 Score: 111
Period size: 37 Copynumber: 2.3 Consensus size: 37
37555098 CCAAAATGAG
* *
37555108 AGAGTTGAGAAAGTTGAGAAATTTGAGAGA-CTTGAA
1 AGAGTTGAGAGAGTTGAGAAAGTTGAGAGAGCTTGAA
* * *
37555144 AGGGTTTGAGAGAGTTGAGAGAGTTGAGAGAGTTTGAA
1 AGAG-TTGAGAGAGTTGAGAAAGTTGAGAGAGCTTGAA
37555182 AGAGTTGAGAGA
1 AGAGTTGAGAGA
37555194 AAGATGTGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
36 3 0.07
37 31 0.74
38 8 0.19
ACGTcount: A:0.37, C:0.01, G:0.37, T:0.24
Consensus pattern (37 bp):
AGAGTTGAGAGAGTTGAGAAAGTTGAGAGAGCTTGAA
Found at i:37555604 original size:26 final size:26
Alignment explanation
Indices: 37555574--37555625 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
37555564 ATTTTCAAAT
* *
37555574 AATAAGATATTTTGT-TTTATATATTA
1 AATAA-ATATTTTATATTTAAATATTA
37555600 AATAAATATTTTATATTTAAATATTA
1 AATAAATATTTTATATTTAAATATTA
37555626 TTAATTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (26 bp):
AATAAATATTTTATATTTAAATATTA
Found at i:37555635 original size:21 final size:22
Alignment explanation
Indices: 37555609--37555654 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
37555599 AAATAAATAT
*
37555609 TTTATATTTAA-AT-ATTATTAA
1 TTTATATTGAATATAATTA-TAA
37555630 TTTATATTGAATATAATTATAA
1 TTTATATTGAATATAATTATAA
37555652 TTT
1 TTT
37555655 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 10 0.45
22 8 0.36
23 4 0.18
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTATATTGAATATAATTATAA
Found at i:37555648 original size:20 final size:21
Alignment explanation
Indices: 37555589--37555648 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 21
37555579 GATATTTTGT
*
37555589 TTTATATATTAAATA-AA-TAT
1 TTTATAT-TTAAATATAATTAA
*
37555609 TTTATATTTAAATATTATTAA
1 TTTATATTTAAATATAATTAA
*
37555630 TTTATA-TTGAATATAATTA
1 TTTATATTTAAATATAATTA
37555649 TAATTTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 7 0.21
20 19 0.56
21 8 0.24
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTATATTTAAATATAATTAA
Found at i:37562733 original size:40 final size:40
Alignment explanation
Indices: 37562669--37562748 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
37562659 GCTTTACGGA
* *
37562669 CATTAGCGGTGCTTTTTAACAAACGCCGC-AATATATCGAG
1 CATTAGCGGCGCTTATTAACAAACGCCGCTAA-ATATCGAG
* *
37562709 CATTAGCGGCGCTTATTGAGAAACGCCGCTAAATATCGAG
1 CATTAGCGGCGCTTATTAACAAACGCCGCTAAATATCGAG
37562749 TAATAGCAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 33 0.94
41 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (40 bp):
CATTAGCGGCGCTTATTAACAAACGCCGCTAAATATCGAG
Found at i:37562969 original size:40 final size:39
Alignment explanation
Indices: 37562866--37562992 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
37562856 CTTTACTAGA
* * * *
37562866 ATTAGCGGCGGTTTTTAAAAAACGCTGC-AATAGATTGAGC
1 ATTAGCGGCGCTTTTT-GAAAACGCCGCTAA-AGATCGAGC
* *
37562906 ATTAGCAGCGCTTGTTGAGAAACGCCGCTAAAGATCGAGC
1 ATTAGCGGCGCTTTTTGA-AAACGCCGCTAAAGATCGAGC
* * *
37562946 ATTAGCGGCGCTTTTTGTAAAACGCCGCTATAGGTCAAGC
1 ATTAGCGGCGCTTTTTG-AAAACGCCGCTAAAGATCGAGC
37562986 ATTAGCG
1 ATTAGCG
37562993 TAAGCAAAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 69 0.95
41 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (39 bp):
ATTAGCGGCGCTTTTTGAAAACGCCGCTAAAGATCGAGC
Found at i:37563196 original size:14 final size:15
Alignment explanation
Indices: 37563179--37563215 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
37563169 ATTGTTTATT
37563179 GTTTAAGGGTT-GGG
1 GTTTAAGGGTTAGGG
37563193 GTTTAAGGGTTAGGG
1 GTTTAAGGGTTAGGG
37563208 GTTTAAGG
1 GTTTAAGG
37563216 TTTATAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.19, C:0.00, G:0.46, T:0.35
Consensus pattern (15 bp):
GTTTAAGGGTTAGGG
Found at i:37563370 original size:64 final size:64
Alignment explanation
Indices: 37563282--37563440 Score: 155
Period size: 64 Copynumber: 2.5 Consensus size: 64
37563272 GATTATACGA
* *
37563282 TTTATGGG-TTATGGGTTTAAGGTTTATAGTTT-AGTGTTTAGGGTTTAAGGGATACATGTTAGG
1 TTTA-GGGATTAT-GGTTTATGGTTTATAGTTTAAG-GGTTAGGGTTTAAGGGATACATGTTAGG
37563345 GG
63 GG
* ** **
37563347 TTTAGGGATTATGGTTTATGGTTTA-AGGTTTAAGGGTTGGGGTTTAAGGTTTAGGTGTTAGGGG
1 TTTAGGGATTATGGTTTATGGTTTATA-GTTTAAGGGTTAGGGTTTAAGGGATACATGTTAGGGG
* * *
37563411 TTAAAGGA-TAGGGGTTTATGGTTTATAGTT
1 TTTAGGGATTA-TGGTTTATGGTTTATAGTT
37563441 AATGTTTTAT
Statistics
Matches: 79, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
63 3 0.04
64 65 0.82
65 11 0.14
ACGTcount: A:0.21, C:0.01, G:0.35, T:0.43
Consensus pattern (64 bp):
TTTAGGGATTATGGTTTATGGTTTATAGTTTAAGGGTTAGGGTTTAAGGGATACATGTTAGGGG
Found at i:37563390 original size:21 final size:22
Alignment explanation
Indices: 37563338--37563417 Score: 78
Period size: 21 Copynumber: 3.7 Consensus size: 22
37563328 AAGGGATACA
* *
37563338 TGTTAGGGGTTTAGGGATTATGG
1 TGTTAGGGGTTTAAGGTTTA-GG
*
37563361 T-TTA-TGGTTTAAGGTTTAAGG
1 TGTTAGGGGTTTAAGGTTT-AGG
37563382 -GTT-GGGGTTTAAGGTTTAGG
1 TGTTAGGGGTTTAAGGTTTAGG
*
37563402 TGTTAGGGGTTAAAGG
1 TGTTAGGGGTTTAAGG
37563418 ATAGGGGTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
20 3 0.06
21 29 0.62
22 14 0.30
23 1 0.02
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (22 bp):
TGTTAGGGGTTTAAGGTTTAGG
Found at i:37563512 original size:28 final size:28
Alignment explanation
Indices: 37563459--37563527 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 28
37563449 ATGATGCAGT
*
37563459 GTTTAGGGGTTAGGGGTTTACAGTTTACG
1 GTTTAAGGGTTAGGGGTTTACAGTTTA-G
37563488 GTTTAAGGGTT-GGGGTTTA-AGGTTTAG
1 GTTTAAGGGTTAGGGGTTTACA-GTTTAG
37563515 GTGTTAAGGGTTA
1 GT-TTAAGGGTTA
37563528 ATGGATAGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
27 4 0.11
28 22 0.61
29 10 0.28
ACGTcount: A:0.19, C:0.03, G:0.39, T:0.39
Consensus pattern (28 bp):
GTTTAAGGGTTAGGGGTTTACAGTTTAG
Found at i:37563516 original size:6 final size:7
Alignment explanation
Indices: 37563481--37563578 Score: 76
Period size: 7 Copynumber: 13.9 Consensus size: 7
37563471 GGGGTTTACA
*
37563481 GTTTACG
1 GTTTAAG
37563488 GTTTAAG
1 GTTTAAG
* **
37563495 GGTTGGG
1 GTTTAAG
37563502 GTTTAAG
1 GTTTAAG
37563509 GTTT-AG
1 GTTTAAG
37563515 GTGTTAAG
1 GT-TTAAG
*
37563523 GGTTAATG
1 GTTTAA-G
* *
37563531 G-ATAGG
1 GTTTAAG
37563537 AGTTT-AG
1 -GTTTAAG
37563544 GATTTAAG
1 G-TTTAAG
37563552 GTTTAAG
1 GTTTAAG
37563559 GTTTAAG
1 GTTTAAG
37563566 GTTTAAG
1 GTTTAAG
37563573 GTTTAA
1 GTTTAA
37563579 AATTGATAGG
Statistics
Matches: 72, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
6 6 0.08
7 57 0.79
8 9 0.12
ACGTcount: A:0.26, C:0.01, G:0.34, T:0.40
Consensus pattern (7 bp):
GTTTAAG
Found at i:37563960 original size:126 final size:125
Alignment explanation
Indices: 37563675--37563941 Score: 326
Period size: 125 Copynumber: 2.1 Consensus size: 125
37563665 CGTTTGGACA
* * ** * * *
37563675 AAAAACGCTGCAAAAGGTAGGCAATAGCGGCGTTTGGACTG-AAAACG-TCGCAACAGTGTTTTA
1 AAAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTT-GTTTGAAAAATGCT-GCAACAATGTATTA
* ** *
37563738 AAAATTGTTCAAAACGACGCTGTTTTGTTACAGGAATTTAATTTTTTAGTGGCGTTTTTCTC
64 AAAATTGTACAAAACGACGCAATTTCGTTACAGGAATTTAATTTTTTAGTGGCGTTTTTCTC
37563800 AAAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTGTTTGAAAAATGCTGCAACAATGTATTAAA
1 AAAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTGTTTGAAAAATGCTGCAACAATGTATTAAA
* *
37563865 AATTGTACAAAAATGGCGCAATTTCGTTACAGAGAA-TTAATTTTTTAGTGGCGTTTTTGCT-
66 AATTGTAC-AAAACGACGCAATTTCGTTACAG-GAATTTAATTTTTTAGTGGCGTTTTT-CTC
* *
37563926 GAAAACGCCGTAAAAG
1 AAAAACGCCGCAAAAG
37563942 TTTACAATTA
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
124 3 0.02
125 59 0.48
126 55 0.45
127 5 0.04
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.30
Consensus pattern (125 bp):
AAAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTGTTTGAAAAATGCTGCAACAATGTATTAAA
AATTGTACAAAACGACGCAATTTCGTTACAGGAATTTAATTTTTTAGTGGCGTTTTTCTC
Found at i:37565884 original size:123 final size:122
Alignment explanation
Indices: 37565650--37566382 Score: 434
Period size: 123 Copynumber: 5.9 Consensus size: 122
37565640 CTTTGAAGAA
* * *
37565650 TTAATATGTAACCTATATTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAGTTTT
1 TTAATATATAACCTATAGTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAATTTT
37565715 TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
66 TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
*
37565772 TTAATATATAACCTATAGTAGTATGGATATATAACCTACATTTCAAATTCATTACTAGTAAATTT
1 TTAATATATAACCTATAGTAGTAT-GATATATAACCTACATTTCAAATTCATTACTAATAAATTT
* *
37565837 TTAAATTTATTAAATAATAATTGTAATTATTATA-TTTTAAAT-A-TTAAAACCTCTATTT
65 TTAAA-TT-TTAAA-AATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
* * * * * ** *
37565895 TTAATATATAACCTATATTTCA-AATTCAT-TACTAA--TA-AGTTTTTAAATTTTAAAAATAAT
1 TTAATATATAACCTATA-GT-AGTA-TGATATA-TAACCTACA--TTTCAAA-TTCATTACTAA-
* * * * *
37565955 TATAATTATTATATTTT--AAAT-ATTA-AA--ACCTATATTTTT-AGT-A--TATAACCTATAT
58 TA-AATTTTTAAATTTTAAAAATAATTATAATTA-TTATATTTTTAAATAACTTAAAACCTATAT
37566010 TT
121 TT
** *** ** * * * * * * *
37566012 CAAATTCATTACTAATAAATTAAAATTATTATATTACTAA-TTATATTACTAATTATATTACTAA
1 TTAA-T-A-TA-TAACCTA-TAGTAGTATGATA-TA-TAACCTACATTTCAAATT-CATTACTAA
** * * * * **
37566076 TTATTATATTACTAATTATATTTAATAATATTACTAATAAGTTTTTAAAATTTAAAAATAA-TTA
58 -TA--A-ATTTTTAA--AT-TTTAA-AA-A-TAATTATAA-TTATT-ATATTTTTAAATAACTTA
*
37566140 TAATTA-TTATATTT
111 -AA--ACCTATATTT
* * * * * *
37566154 TTAAATAACTTAAAACCTATA-T-TTTTAATATATAACCTATATTTCAAATTCATTACTAATAAG
1 TT-AAT-A--TATAACCTATAGTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAA
*
37566217 TTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
62 TTTTTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
* * * *
37566278 TTAATATATAACCTATATTAGTATGGATATTTAACCTACATTTCAAATTCATCACTAATAAGTTT
1 TTAATATATAACCTATAGTAGTAT-GATATATAACCTACATTTCAAATTCATTACTAATAAATTT
*
37566343 TTAAATTTTAAAAATAATTATAATAATTATA-TTTTAAATA
65 TTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATA
37566383 TTATATCACT
Statistics
Matches: 474, Mismatches: 81, Indels: 112
0.71 0.12 0.17
Matches are distributed among these distances:
117 15 0.03
118 8 0.02
119 7 0.01
120 19 0.04
121 12 0.03
122 58 0.12
123 155 0.33
124 34 0.07
125 32 0.07
126 35 0.07
127 10 0.02
128 1 0.00
129 2 0.00
130 7 0.01
131 3 0.01
132 1 0.00
133 8 0.02
134 3 0.01
136 3 0.01
137 16 0.03
138 15 0.03
139 7 0.01
140 2 0.00
141 3 0.01
142 12 0.03
143 6 0.01
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (122 bp):
TTAATATATAACCTATAGTAGTATGATATATAACCTACATTTCAAATTCATTACTAATAAATTTT
TAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAACCTATATTT
Found at i:37565913 original size:20 final size:21
Alignment explanation
Indices: 37565867--37565919 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
37565857 TTGTAATTAT
37565867 TATATTTTAAATATTAAAACC
1 TATATTTTAAATATTAAAACC
* * *
37565888 TCTATTTTTAATA-TATAACC
1 TATATTTTAAATATTAAAACC
*
37565908 TATATTTCAAAT
1 TATATTTTAAAT
37565920 TCATTACTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (21 bp):
TATATTTTAAATATTAAAACC
Found at i:37566004 original size:97 final size:100
Alignment explanation
Indices: 37565798--37566032 Score: 395
Period size: 97 Copynumber: 2.4 Consensus size: 100
37565788 AGTAGTATGG
* * *
37565798 ATATATAACCTACATTTCAAATTCATTACTAGTAAATTTTTAAATTTATTAAATAATAATTGTAA
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATTTATTAAATAATAATTATAA
*
37565863 TTATTATATTTTAAATATTAAAACCTCTATTTTTA
66 TTATTATATTTTAAATATTAAAACCTATATTTTTA
*
37565898 ATATATAACCTATATTTCAAATTCATTACTAATAAGTTTTTAAA-TT-TTAAA-AATAATTATAA
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATTTATTAAATAATAATTATAA
37565960 TTATTATATTTTAAATATTAAAACCTATATTTTTA
66 TTATTATATTTTAAATATTAAAACCTATATTTTTA
*
37565995 GTATATAACCTATATTTCAAATTCATTACTAATAAATT
1 ATATATAACCTATATTTCAAATTCATTACTAATAAATT
37566033 AAAATTATTA
Statistics
Matches: 128, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
97 80 0.62
98 5 0.04
99 2 0.02
100 41 0.32
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (100 bp):
ATATATAACCTATATTTCAAATTCATTACTAATAAATTTTTAAATTTATTAAATAATAATTATAA
TTATTATATTTTAAATATTAAAACCTATATTTTTA
Found at i:37566056 original size:12 final size:12
Alignment explanation
Indices: 37566039--37566113 Score: 100
Period size: 12 Copynumber: 6.2 Consensus size: 12
37566029 AATTAAAATT
37566039 ATTATATTACTA
1 ATTATATTACTA
37566051 ATTATATTACTA
1 ATTATATTACTA
37566063 ATTATATTACTAA
1 ATTATATTACT-A
37566076 TTATTATATTACTA
1 --ATTATATTACTA
37566090 ATTATATT--TA
1 ATTATATTACTA
*
37566100 ATAATATTACTA
1 ATTATATTACTA
37566112 AT
1 AT
37566114 AAGTTTTTAA
Statistics
Matches: 57, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
10 9 0.16
12 35 0.61
13 1 0.02
14 1 0.02
15 11 0.19
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.51
Consensus pattern (12 bp):
ATTATATTACTA
Found at i:37566081 original size:27 final size:24
Alignment explanation
Indices: 37566039--37566113 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 24
37566029 AATTAAAATT
37566039 ATTATATTACTAATTATATTACTA
1 ATTATATTACTAATTATATTACTA
37566063 ATTATATTACTAATTATTATATTACTA
1 ATTATATTACT-A--ATTATATTACTA
*
37566090 ATTATATT--TAATAATATTACTA
1 ATTATATTACTAATTATATTACTA
37566112 AT
1 AT
37566114 AAGTTTTTAA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
22 13 0.28
24 12 0.26
25 2 0.04
27 20 0.43
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTATATTACTAATTATATTACTA
Found at i:37566230 original size:100 final size:100
Alignment explanation
Indices: 37566105--37566296 Score: 366
Period size: 100 Copynumber: 1.9 Consensus size: 100
37566095 ATTTAATAAT
*
37566105 ATTACTAATAAGTTTTTAAAATTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
1 ATTACTAATAAGTTTCTAAAATTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
37566170 CTATATTTTTAATATATAACCTATATTTCAAATTC
66 CTATATTTTTAATATATAACCTATATTTCAAATTC
*
37566205 ATTACTAATAAGTTTCTAAATTTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
1 ATTACTAATAAGTTTCTAAAATTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
37566270 CTATATTTTTAATATATAACCTATATT
66 CTATATTTTTAATATATAACCTATATT
37566297 AGTATGGATA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 90 1.00
ACGTcount: A:0.45, C:0.08, G:0.01, T:0.46
Consensus pattern (100 bp):
ATTACTAATAAGTTTCTAAAATTTAAAAATAATTATAATTATTATATTTTTAAATAACTTAAAAC
CTATATTTTTAATATATAACCTATATTTCAAATTC
Found at i:37566521 original size:9 final size:9
Alignment explanation
Indices: 37566453--37566531 Score: 52
Period size: 9 Copynumber: 8.8 Consensus size: 9
37566443 CCACATGACA
*
37566453 TACATAACT
1 TACATAATT
37566462 TACATAATT
1 TACATAATT
*
37566471 TACATAAATA
1 TACAT-AATT
* * *
37566481 TATATCATA
1 TACATAATT
* *
37566490 T-CAAAACT
1 TACATAATT
*
37566498 TACATAACT
1 TACATAATT
37566507 TACATAATT
1 TACATAATT
* *
37566516 TGCATATTT
1 TACATAATT
37566525 TACATAA
1 TACATAA
37566532 ATATATATGT
Statistics
Matches: 53, Mismatches: 15, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
8 3 0.06
9 43 0.81
10 7 0.13
ACGTcount: A:0.46, C:0.15, G:0.01, T:0.38
Consensus pattern (9 bp):
TACATAATT
Found at i:37567883 original size:49 final size:50
Alignment explanation
Indices: 37567748--37567943 Score: 193
Period size: 49 Copynumber: 3.9 Consensus size: 50
37567738 ACATTTGGGT
*
37567748 GATGAGA--TCCCATGTAAGACCATGT-TCGGGACATGGCATTGGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCT-GGGACATGGCATTGGCA-C--CGA
* *
37567799 GACTATGAGAGGTCCCATGTAAGGCCATGTCTGGGACATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* * * *
37567852 GATGAGAGGTCCC-CGTAAGACCATGTTTGGGACATGACATGGGCACCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* ** * *
37567901 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTG
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTG
37567944 ACAGTACAGG
Statistics
Matches: 120, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
49 40 0.33
50 35 0.29
51 1 0.01
53 3 0.03
54 6 0.05
55 1 0.01
56 33 0.28
57 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
Found at i:37569896 original size:27 final size:27
Alignment explanation
Indices: 37569865--37570042 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
37569855 TAAATTGTAC
37569865 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37569892 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
37569918 ATGCACTAAGTGTGTGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37569946 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37569974 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37570001 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37570028 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37570043 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37570033 original size:82 final size:81
Alignment explanation
Indices: 37569862--37570042 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
37569852 GATTAAATTG
* *
37569862 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
37569927 GTGTGTGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37569943 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37570007 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37570025 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37570043 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37578026 original size:27 final size:27
Alignment explanation
Indices: 37577995--37578171 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37577985 TAAATTGTAC
37577995 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37578022 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37578048 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37578076 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37578104 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
37578131 AGCACTAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37578157 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37578172 GACTCAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
26 17 0.13
27 88 0.69
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37578109 original size:82 final size:81
Alignment explanation
Indices: 37577996--37578151 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37577986 AAATTGTACA
* *
37577996 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37578060 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37578077 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37578142 TGCGAGTTGA
65 TGCGAATTGA
37578152 TATATAGCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37589703 original size:20 final size:20
Alignment explanation
Indices: 37589665--37589703 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37589655 TAAGCAAGCA
*
37589665 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
37589685 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
37589704 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:37590842 original size:24 final size:23
Alignment explanation
Indices: 37590791--37590845 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
37590781 AATATATCAT
*
37590791 AAATATAACTTACATAACATACGT
1 AAATATAACTTACATAACATAC-A
37590815 AAATATAACTTACATAATACATA-A
1 AAATATAACTTACAT-A-ACATACA
37590839 AAATATA
1 AAATATA
37590846 TCATATCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 22 0.79
25 1 0.04
26 5 0.18
ACGTcount: A:0.56, C:0.13, G:0.02, T:0.29
Consensus pattern (23 bp):
AAATATAACTTACATAACATACA
Found at i:37590877 original size:52 final size:53
Alignment explanation
Indices: 37590819--37590998 Score: 174
Period size: 52 Copynumber: 3.4 Consensus size: 53
37590809 ATACGTAAAT
*
37590819 ATAACTTACATAA-TACATAAAAATATATCATATCATAACTTACACAACTCGC
1 ATAACTTACATAATTACATAAAAATATATCATATCATAACTTACACAACTCAC
* * *
37590871 ATAACTTACATAACTTACATAATACATAAATAT-ATATCAT-A--T-CATAACTTAC
1 ATAACTTACATAA-TTACATAA-A-A-ATATATCATATCATAACTTACACAACTCAC
* * * * *
37590923 ATAACTTACATAATTTACATAAATATATATCATATCAAAACTTACATAATTTAC
1 ATAACTTACATAA-TTACATAAAAATATATCATATCATAACTTACACAACTCAC
*
37590977 ATAACTCACATAACTTACATAA
1 ATAACTTACATAA-TTACATAA
37590999 CTTACATAAT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
49 5 0.05
50 6 0.06
51 2 0.02
52 41 0.38
53 2 0.02
54 36 0.34
55 2 0.02
56 8 0.07
57 5 0.05
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.33
Consensus pattern (53 bp):
ATAACTTACATAATTACATAAAAATATATCATATCATAACTTACACAACTCAC
Found at i:37590882 original size:9 final size:9
Alignment explanation
Indices: 37590852--37591116 Score: 155
Period size: 9 Copynumber: 30.7 Consensus size: 9
37590842 TATATCATAT
37590852 CATAACTTA
1 CATAACTTA
* **
37590861 CACAACTCG
1 CATAACTTA
37590870 CATAACTTA
1 CATAACTTA
37590879 CATAACTTA
1 CATAACTTA
37590888 CATAA--TA
1 CATAACTTA
*
37590895 CATAA-ATA
1 CATAACTTA
* * *
37590903 TATATCATA
1 CATAACTTA
37590912 TCATAACTTA
1 -CATAACTTA
37590922 CATAACTTA
1 CATAACTTA
*
37590931 CATAATTTA
1 CATAACTTA
*
37590940 CATAA-ATA
1 CATAACTTA
* * *
37590948 TATATCATA
1 CATAACTTA
*
37590957 TCAAAACTTA
1 -CATAACTTA
*
37590967 CATAATTTA
1 CATAACTTA
*
37590976 CATAACTCA
1 CATAACTTA
37590985 CATAACTTA
1 CATAACTTA
37590994 CATAACTTA
1 CATAACTTA
37591003 CATAA--TA
1 CATAACTTA
*
37591010 CATAA-ATA
1 CATAACTTA
* * *
37591018 TATATCATA
1 CATAACTTA
* *
37591027 TCATAGCTGA
1 -CATAACTTA
37591037 CATAACTTA
1 CATAACTTA
**
37591046 TTTATACTTA
1 CATA-ACTTA
*
37591056 TATAA--TA
1 CATAACTTA
37591063 CATAACTTA
1 CATAACTTA
37591072 CATAA--TA
1 CATAACTTA
37591079 CATAA---A
1 CATAACTTA
*
37591085 TATAACTTA
1 CATAACTTA
*
37591094 CATAACTTT
1 CATAACTTA
37591103 CATAAC-TA
1 CATAACTTA
37591111 CATAAC
1 CATAAC
37591117 GTATTTATAC
Statistics
Matches: 202, Mismatches: 40, Indels: 29
0.75 0.15 0.11
Matches are distributed among these distances:
6 5 0.02
7 27 0.13
8 22 0.11
9 124 0.61
10 24 0.12
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:37590890 original size:61 final size:61
Alignment explanation
Indices: 37590819--37591043 Score: 275
Period size: 61 Copynumber: 3.8 Consensus size: 61
37590809 ATACGTAAAT
* *
37590819 ATAACTTACATAATACATAAAAATATATCATATCATAACTTACACAACTCGCATAACTTAC
1 ATAACTTACATAATACATAAAAATATATCATATCATAACTTACATAACTCACATAACTTAC
* * *
37590880 ATAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTACATAATTTAC
1 ATAACTTACATAATACATAAAAATATATCATATCATAACTTACATAACTCACATAACTTAC
* * ** * *
37590941 ATAA-ATATAT-AT-CATATCAA-A-A-CTTA-CATAATTTACATAACTCACATAACTTAC
1 ATAACTTACATAATACATAAAAATATATCATATCATAACTTACATAACTCACATAACTTAC
* * *
37590995 ATAACTTACATAATACATAAATATATATCATATCATAGCTGACATAACT
1 ATAACTTACATAATACATAAAAATATATCATATCATAACTTACATAACT
37591044 TATTTATACT
Statistics
Matches: 134, Mismatches: 23, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
54 29 0.22
55 7 0.05
56 3 0.02
57 6 0.04
58 6 0.04
59 3 0.02
60 7 0.05
61 73 0.54
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.33
Consensus pattern (61 bp):
ATAACTTACATAATACATAAAAATATATCATATCATAACTTACATAACTCACATAACTTAC
Found at i:37590957 original size:45 final size:44
Alignment explanation
Indices: 37590870--37590989 Score: 188
Period size: 45 Copynumber: 2.7 Consensus size: 44
37590860 ACACAACTCG
37590870 CATAACTTACATAACTTACATAA-TACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAATTACATAAATATATATCATAT
37590913 CATAACTTACATAACTTACATAATTTACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAA-TTACATAAATATATATCATAT
* * *
37590958 CAAAACTTACATAATTTACATAACTCACATAA
1 CATAACTTACATAACTTACATAA-TTACATAA
37590990 CTTACATAAC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 23 0.32
45 48 0.68
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (44 bp):
CATAACTTACATAACTTACATAATTACATAAATATATATCATAT
Found at i:37602503 original size:39 final size:39
Alignment explanation
Indices: 37602460--37602537 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
37602450 TTAAACGTTG
*
37602460 AGGTTAGCATTTGGGTTGTTGAATATGCCGAACTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
37602499 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
37602538 TTAGGGAGAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.23, C:0.12, G:0.29, T:0.36
Consensus pattern (39 bp):
AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
Found at i:37604229 original size:49 final size:47
Alignment explanation
Indices: 37604153--37604608 Score: 660
Period size: 47 Copynumber: 9.6 Consensus size: 47
37604143 TTAAACCCAT
* *
37604153 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
37604200 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37604249 ATGTGAAAGTGTATATATGTGAATAGGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTG-ATAAGGCCTAATGGCCGATGTGATGA
* *
37604297 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37604344 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37604393 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
37604440 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
** *
37604489 ATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
37604536 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
37604583 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
37604609 TCCCGAAGGG
Statistics
Matches: 370, Mismatches: 32, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
47 193 0.52
48 44 0.12
49 133 0.36
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:37604417 original size:96 final size:94
Alignment explanation
Indices: 37604153--37604608 Score: 678
Period size: 96 Copynumber: 4.8 Consensus size: 94
37604143 TTAAACCCAT
* * *
37604153 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
* *
37604218 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 GTGTGATAAGGCCTAATAGCCGATGTGATGA
*
37604249 ATGTGAAAGTGTATATATGTGAATAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 ATGTGAAAGTGTATATATGTG-ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
37604314 TGTGATAAGGCCTAATAGCCGATGTGATGA
65 TGTGATAAGGCCTAATAGCCGATGTGATGA
37604344 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
37604409 GTGTGATAAGGCCTAATAGCCGATGTGATGA
64 GTGTGATAAGGCCTAATAGCCGATGTGATGA
37604440 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
37604505 GCGTGATAAGGCTTAATGGCCGATGTGATGA
64 GTGTGATAAGGCCTAATAGCCGATGTGATGA
* * ** * * * * **
37604536 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
37604601 GTGATAAG
66 GTGATAAG
37604609 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
94 51 0.15
95 45 0.13
96 196 0.58
97 44 0.13
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGT
GTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:37604783 original size:37 final size:37
Alignment explanation
Indices: 37604729--37604804 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
37604719 GAGTTCTAAG
* * *
37604729 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
*
37604766 GACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
37604803 GA
1 GA
37604805 TTTCGTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
Found at i:37607898 original size:20 final size:20
Alignment explanation
Indices: 37607875--37607915 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
37607865 AAATGTTTAA
37607875 AGAAAAAACAAATAAGTGAC
1 AGAAAAAACAAATAAGTGAC
37607895 AGAAAAAACAAATAAGTGAC
1 AGAAAAAACAAATAAGTGAC
37607915 A
1 A
37607916 TGATATGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.10, G:0.15, T:0.10
Consensus pattern (20 bp):
AGAAAAAACAAATAAGTGAC
Found at i:37608406 original size:27 final size:28
Alignment explanation
Indices: 37608373--37608427 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
37608363 TTGCCGCCAC
* *
37608373 CCTCCATTCCTTCTCCATC-TCACCGCT
1 CCTCCATTACTTCTCCATCGCCACCGCT
*
37608400 CCTCCATTATTTCTCCATCGCCACCGCT
1 CCTCCATTACTTCTCCATCGCCACCGCT
37608428 TATCTTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.13, C:0.49, G:0.05, T:0.33
Consensus pattern (28 bp):
CCTCCATTACTTCTCCATCGCCACCGCT
Found at i:37610559 original size:50 final size:50
Alignment explanation
Indices: 37610453--37610645 Score: 199
Period size: 50 Copynumber: 3.7 Consensus size: 50
37610443 GGGAATGAGA
**
37610453 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---A---TATGAGAGG
* *
37610509 TCCCATGTAAGACCATGTCCGGGACATGGCGTTGGCACCGAA-ATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC-AATATGAGAGG
** * * * **
37610559 TCCCCCGTAAAACCATGTCTGGGACATGACATGGGCACCAATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGAGAGG
* *
37610609 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37610646 GTACAGGAAC
Statistics
Matches: 115, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
49 2 0.02
50 76 0.66
54 1 0.01
56 35 0.30
57 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGAGAGG
Found at i:37610918 original size:20 final size:20
Alignment explanation
Indices: 37610893--37610941 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
37610883 TGAGTTATTT
37610893 AAGTAAGCAAGGAAGTAAAA
1 AAGTAAGCAAGGAAGTAAAA
* *
37610913 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGGAAGTAAAA
37610933 AAG-AAGCAA
1 AAGTAAGCAA
37610942 AGACCATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.59, C:0.04, G:0.27, T:0.10
Consensus pattern (20 bp):
AAGTAAGCAAGGAAGTAAAA
Found at i:37617721 original size:50 final size:50
Alignment explanation
Indices: 37617664--37617857 Score: 178
Period size: 50 Copynumber: 3.9 Consensus size: 50
37617654 TACTGAGGTT
* * *
37617664 ATGAGAGGTCCCATGTAAGACCATGTTTGGCACATGGCGTTGGCACCGAA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA
* * *
37617714 ATGAGAGGTCCGC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCC-CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA
** * * * * *
37617764 ATGAGAACTCTCATGTAAGACCATATCTGGGATATGACATTGGCA--GTAC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AA
* * ** * *
37617813 AGGAAACATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37617858 TGTTATTATC
Statistics
Matches: 116, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.32
50 77 0.66
51 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAA
Found at i:37618084 original size:20 final size:20
Alignment explanation
Indices: 37618059--37618107 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
37618049 TGAGTTATTT
37618059 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
37618079 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
37618099 AAG-AAGCAA
1 AAGTAAGCAA
37618108 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:37628319 original size:41 final size:41
Alignment explanation
Indices: 37628262--37628385 Score: 151
Period size: 41 Copynumber: 3.0 Consensus size: 41
37628252 TGGAGATAGC
* * * **
37628262 GATTCAAGCTTTGTGCCTAGCATGCTTCTTGCTTGTGTATT
1 GATTCAGGCTTTGTGCCTAGCAAGCTTCGTGCCGGTGTATT
* *
37628303 GATTCAGGCTTTGTGCCTAGCAGGTTTCGTGCCGGTGTATT
1 GATTCAGGCTTTGTGCCTAGCAAGCTTCGTGCCGGTGTATT
* *
37628344 G-TATCAGGCCTTGAGCCTAGCAAGCTTCGTGCCGGTGTATT
1 GAT-TCAGGCTTTGTGCCTAGCAAGCTTCGTGCCGGTGTATT
37628385 G
1 G
37628386 TATCAGGTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 1 0.01
41 71 0.99
ACGTcount: A:0.15, C:0.21, G:0.28, T:0.36
Consensus pattern (41 bp):
GATTCAGGCTTTGTGCCTAGCAAGCTTCGTGCCGGTGTATT
Found at i:37637286 original size:45 final size:44
Alignment explanation
Indices: 37637203--37637287 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
37637193 AGATTAATTT
* * **
37637203 AAAAATATATTTTAATTTTAAATTTTTATTATTTATTTATATCA
1 AAAAATATATTTAAAATTTAAATTTGAATTATTTATTTATATCA
* *
37637247 AAAAATATATTTAAAATTTGAATTTGAATTTTATTATTTAT
1 AAAAATATATTTAAAATTTAAATTTGAATTAT-TTATTTAT
37637288 TATGGTTTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 26 0.76
45 8 0.24
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.54
Consensus pattern (44 bp):
AAAAATATATTTAAAATTTAAATTTGAATTATTTATTTATATCA
Found at i:37647784 original size:18 final size:18
Alignment explanation
Indices: 37647763--37647797 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37647753 CTCCATTAAA
37647763 AGTTTTTATT-TACAATAT
1 AGTTTTT-TTGTACAATAT
37647781 AGTTTTTTTGTACAATA
1 AGTTTTTTTGTACAATA
37647798 AAAACTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (18 bp):
AGTTTTTTTGTACAATAT
Found at i:37649823 original size:30 final size:31
Alignment explanation
Indices: 37649770--37649833 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 31
37649760 TTTTAGCTAT
*
37649770 ATTTGACCCTCAACCTATTAAAAAAAGTT-A
1 ATTTGACCATCAACCTATTAAAAAAAGTTGA
* *
37649800 ATTTGACCATCAA-CTTTTCAAAAAGAGTTGA
1 ATTTGACCATCAACCTATT-AAAAAAAGTTGA
37649831 ATT
1 ATT
37649834 GATTTTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 4 0.14
30 21 0.72
31 4 0.14
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (31 bp):
ATTTGACCATCAACCTATTAAAAAAAGTTGA
Found at i:37651968 original size:50 final size:53
Alignment explanation
Indices: 37651856--37652001 Score: 163
Period size: 56 Copynumber: 2.8 Consensus size: 53
37651846 ATTTGGTTAA
* * *
37651856 AGAGATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCATTAAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CAAG--TATG
* *
37651912 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-CAAG-ATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACAAGTATG
* * * *
37651962 AGAGGTCCCCTGTAAGACCATATCTGGGATATGACATTGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
37652002 TAGTACAGAA
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
50 37 0.47
53 3 0.04
55 1 0.01
56 38 0.48
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (53 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACAAGTATG
Found at i:37660192 original size:75 final size:75
Alignment explanation
Indices: 37660098--37660255 Score: 199
Period size: 75 Copynumber: 2.1 Consensus size: 75
37660088 ATGCAACGAG
* * * *
37660098 TCCCTCCCCAATCCCAAAGCTATAATTCATATATCATTACATGTTTGGTACCCAACAATGAATGA
1 TCCCTCCCCAATCCCAAAGCTAGAATTCAGATATCATTACATGTTCGGTACCCAACAATGAAAGA
37660163 ATCGTCCTGA
66 ATCGTCCTGA
* * * * * * * *
37660173 TCTCTCCCCAATTCTAAAGCTGGAATTCAGATATCGTTGCATGTTCGGTACCCAATAGTGAAAGA
1 TCCCTCCCCAATCCCAAAGCTAGAATTCAGATATCATTACATGTTCGGTACCCAACAATGAAAGA
*
37660238 ATCGTCCTGG
66 ATCGTCCTGA
37660248 TCCCTCCC
1 TCCCTCCC
37660256 TTTTTGCAAC
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (75 bp):
TCCCTCCCCAATCCCAAAGCTAGAATTCAGATATCATTACATGTTCGGTACCCAACAATGAAAGA
ATCGTCCTGA
Found at i:37662019 original size:22 final size:22
Alignment explanation
Indices: 37661986--37662028 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
37661976 TAGCTATTTC
37661986 TTTTCGTCTTTATCATT-TTAGT
1 TTTTCGTCTTTAT-ATTGTTAGT
37662008 TTTTC-TCTTTTATATTGTTAG
1 TTTTCGTC-TTTATATTGTTAG
37662029 AAGTCTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.14, C:0.12, G:0.09, T:0.65
Consensus pattern (22 bp):
TTTTCGTCTTTATATTGTTAGT
Found at i:37669685 original size:15 final size:15
Alignment explanation
Indices: 37669661--37669691 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37669651 AAATGAGTCC
*
37669661 ATTGCCATTGTAATA
1 ATTGCAATTGTAATA
37669676 ATTGCAATTGTAATA
1 ATTGCAATTGTAATA
37669691 A
1 A
37669692 GGCTAGGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (15 bp):
ATTGCAATTGTAATA
Found at i:37671888 original size:17 final size:17
Alignment explanation
Indices: 37671866--37671899 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37671856 AGCACCAATG
37671866 ACTCTTGACCTTTCATA
1 ACTCTTGACCTTTCATA
37671883 ACTCTTGACCTTTCATA
1 ACTCTTGACCTTTCATA
37671900 TAACATAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.06, T:0.41
Consensus pattern (17 bp):
ACTCTTGACCTTTCATA
Found at i:37684243 original size:20 final size:22
Alignment explanation
Indices: 37684208--37684247 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
37684198 CAATGAATAA
37684208 AAAACTATTAATTTTTTTTAAT
1 AAAACTATTAATTTTTTTTAAT
37684230 AAAA-TATT-ATTTTTTTTA
1 AAAACTATTAATTTTTTTTA
37684248 TTTTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.56
21 4 0.22
22 4 0.22
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (22 bp):
AAAACTATTAATTTTTTTTAAT
Found at i:37684368 original size:27 final size:27
Alignment explanation
Indices: 37684338--37684426 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
37684328 CCTGTCAGGT
* **
37684338 AGGCGCCACTAATTGTGCCTCATAGGG
1 AGGCGCCATTAAAAGTGCCTCATAGGG
37684365 AGGCGCCATTAAAAGTGCCTCATAGGG
1 AGGCGCCATTAAAAGTGCCTCATAGGG
*
37684392 AGGCGCCATTAAAAGTGCCTTATAGGG
1 AGGCGCCATTAAAAGTGCCTCATAGGG
37684419 AGGCGCCA
1 AGGCGCCA
37684427 ATGGGTAATT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.19
Consensus pattern (27 bp):
AGGCGCCATTAAAAGTGCCTCATAGGG
Found at i:37684464 original size:21 final size:21
Alignment explanation
Indices: 37684435--37684643 Score: 113
Period size: 21 Copynumber: 10.2 Consensus size: 21
37684425 CAATGGGTAA
37684435 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
*
37684456 TTTTATATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
* * * *
37684477 ATTTTCTAATTAATTTTGTAGTT
1 -TTTTGT-ATGAATATTGTAATT
*
37684500 ATAGTTT-T-TG-AT-TAGT-A--
1 -T--TTTGTATGAATATTGTAATT
37684517 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
* * *
37684538 ATTTTATAATAAATTTTGT-ATT
1 -TTTTGT-ATGAATATTGTAATT
* * * * *
37684560 TATAGTTTTGGAT-TAGT-A--
1 TTTTG-TATGAATATTGTAATT
37684578 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
37684599 TTTTGTATGAATATTGTAA--
1 TTTTGTATGAATATTGTAATT
37684618 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
37684639 ATTTT
1 -TTTT
37684644 ATAATTAATT
Statistics
Matches: 143, Mismatches: 24, Indels: 41
0.69 0.12 0.20
Matches are distributed among these distances:
14 3 0.02
15 1 0.01
16 3 0.02
17 7 0.05
18 9 0.06
19 21 0.15
20 7 0.05
21 46 0.32
22 19 0.13
23 23 0.16
24 1 0.01
25 3 0.02
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (21 bp):
TTTTGTATGAATATTGTAATT
Found at i:37684556 original size:61 final size:61
Alignment explanation
Indices: 37684456--37684602 Score: 242
Period size: 61 Copynumber: 2.4 Consensus size: 61
37684446 TATTGTAATT
* * * *
37684456 TTTTATATGAATATTGTAATTATTTTCTAATTAATTTTGTAGTTATAGTTTTTGATTAGTA
1 TTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTAGTTATAGTTTTGGATTAGTA
*
37684517 TTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTATTTATAGTTTTGGATTAGTA
1 TTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTAGTTATAGTTTTGGATTAGTA
37684578 TTTTGTATGAATATTGTAATT-TTTT
1 TTTTGTATGAATATTGTAATTATTTT
37684603 GTATGAATAT
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
60 4 0.05
61 77 0.95
ACGTcount: A:0.29, C:0.01, G:0.12, T:0.58
Consensus pattern (61 bp):
TTTTGTATGAATATTGTAATTATTTTATAATAAATTTTGTAGTTATAGTTTTGGATTAGTA
Found at i:37684623 original size:19 final size:19
Alignment explanation
Indices: 37684577--37684638 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
37684567 TTGGATTAGT
37684577 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
37684596 ATTTTTTGTATGAATATTGTA
1 A--TTTTGTATGAATATTGTA
37684617 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
37684636 ATT
1 ATT
37684639 ATTTTATAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
19 22 0.54
21 19 0.46
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.55
Consensus pattern (19 bp):
ATTTTGTATGAATATTGTA
Found at i:37684699 original size:60 final size:60
Alignment explanation
Indices: 37684634--37684749 Score: 178
Period size: 60 Copynumber: 1.9 Consensus size: 60
37684624 ATGAATATTG
* * * * * *
37684634 TAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTC
1 TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTC
37684694 TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTG
1 TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTG
37684750 ATTAGTTTAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (60 bp):
TAATTATTTAAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGTTTC
Found at i:37684907 original size:15 final size:16
Alignment explanation
Indices: 37684871--37684907 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
37684861 CTCATTTAAT
*
37684871 TTTTATATAATGTAAC
1 TTTTATATAAAGTAAC
37684887 TTTTATATAAAGTAA-
1 TTTTATATAAAGTAAC
37684902 TTTTAT
1 TTTTAT
37684908 TTGATTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (16 bp):
TTTTATATAAAGTAAC
Found at i:37696590 original size:9 final size:10
Alignment explanation
Indices: 37696560--37696593 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
37696550 AGAGTTGTAA
37696560 TATATTTTTCT
1 TATA-TTTTCT
37696571 TATATTTTCT
1 TATATTTTCT
37696581 TATA-TTTCT
1 TATATTTTCT
37696590 TATA
1 TATA
37696594 AAAAATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.39
10 10 0.43
11 4 0.17
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.68
Consensus pattern (10 bp):
TATATTTTCT
Found at i:37704176 original size:16 final size:16
Alignment explanation
Indices: 37704155--37704189 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
37704145 TCAAAGGGCA
37704155 ATGGTCACCCTGTTTC
1 ATGGTCACCCTGTTTC
37704171 ATGGTCACCCTGTTTC
1 ATGGTCACCCTGTTTC
37704187 ATG
1 ATG
37704190 ACATGATTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.29, G:0.20, T:0.37
Consensus pattern (16 bp):
ATGGTCACCCTGTTTC
Found at i:37708421 original size:44 final size:45
Alignment explanation
Indices: 37708328--37708802 Score: 159
Period size: 44 Copynumber: 10.1 Consensus size: 45
37708318 GCCAGAATTT
* * **
37708328 TTATCTCCCTGAGATTACAGCGGAGCAGACTGAAGCT--AGTAATC
1 TTATCTCCCTGAGATTACAGTGGAGCAGA-TTAAAATAAAGTAATC
* *
37708372 CTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAG-GATC
1 TTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGTAATC
* * * * * * *
37708416 TTATCTCTCTGA-AGTTACTGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATC
1 TTATCTCCCTGAGA-TTACAGTGGAGCAGAT----T-AAAAT-AA---AGTAATC
* * **
37708470 TTATCTCCTTGAGATTACAGTGAAGCAGATTGAAGCT--AGTAATC
1 TTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAAGTAATC
* * * *
37708514 CTATCTCCCTGAGATTACAGTGGA-CGGATTGAAATAAAG-GATC
1 TTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGTAATC
* * * * * * *
37708557 TTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATC
1 TTATCTCCCTGAGA-TTACAGTGGAGCAGAT----T-AAAAT-AA---AGTAATC
* *
37708611 TTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCT--AGTAATC
1 TTATCTCCCTGAGATTACAGTGGAGCAGATTAAA-ATAAAGTAATC
* * * *
37708655 CTACCTCCCTGAGATTATAGTGGAGCAGATTAAAATAAAG-GATC
1 TTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGTAATC
** * * * *
37708699 TTATCTCTTTGA-AGTTACAGTAGAGTAGATCGCATCAGATTGAAGCTAGTAATC
1 TTATCTCCCTGAGA-TTACAGTGGAGCAGAT----T-AAAAT-AA---AGTAATC
* * * *
37708753 CTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAG-GATC
1 TTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGTAATC
37708797 TTATCT
1 TTATCT
37708803 TTCTAAAGTT
Statistics
Matches: 310, Mismatches: 77, Indels: 88
0.65 0.16 0.19
Matches are distributed among these distances:
42 4 0.01
43 32 0.10
44 153 0.49
45 6 0.02
48 5 0.02
49 13 0.04
50 12 0.04
53 6 0.02
54 75 0.24
55 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (45 bp):
TTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGTAATC
Found at i:37708518 original size:142 final size:142
Alignment explanation
Indices: 37708262--37708783 Score: 857
Period size: 142 Copynumber: 3.7 Consensus size: 142
37708252 TCCTAATCGG
* *
37708262 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGCATCAGATTGAAGCCAGAATT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
* *
37708327 TTTATCTCCCTGAGATTACAGCGGAGCAGACTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
37708392 TGGAGCAGATTA
131 TGGAGCAGATTA
*
37708404 AAATAAAGGATCTTATCTCTCTGAAGTTACTGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
* * *
37708469 CTTATCTCCTTGAGATTACAGTGAAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
* *
37708534 TGGA-CGGATTG
131 TGGAGCAGATTA
*
37708545 AAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
* * *
37708610 CTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTACCTCCCTGAGATTATAG
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
37708675 TGGAGCAGATTA
131 TGGAGCAGATTA
* * *
37708687 AAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCTAGTAAT
1 AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
* * *
37708752 CCTATCTCCCTGAGATTACAGTGGAGCGGATT
66 CTTATCTCCCTGAGATTACAGCGGAGCAGATT
37708784 AAAGTAAAGG
Statistics
Matches: 352, Mismatches: 27, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
141 131 0.37
142 221 0.63
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (142 bp):
AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAAT
CTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAG
TGGAGCAGATTA
Found at i:37708768 original size:283 final size:283
Alignment explanation
Indices: 37708261--37708783 Score: 902
Period size: 283 Copynumber: 1.8 Consensus size: 283
37708251 TTCCTAATCG
* * *
37708261 GAAATAAAGGATCTTATCTCTCTGAAGTTACAGTGGAGTAGATCGCATCAGATTGAAGCCAGAAT
1 GAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAA
* * *
37708326 TTTTATCTCCCTGAGATTACAGCGGAGCAGACTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
66 TCTTATCTCCCTGAGATTACAGCGGAGCAGACTAAAGCTAGTAATCCTACCTCCCTGAGATTACA
*
37708391 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACTGTAGAGTAGATCGCATCAGAT
131 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGAT
* *
37708456 TGAAGCCAGAAATCTTATCTCCTTGAGATTACAGTGAAGCAGATTGAAGCTAGTAATCCTATCTC
196 TGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTGAAGCAGATTGAAGCTAGTAATCCTATCTC
37708521 CCTGAGATTACAGTGGACGGATT
261 CCTGAGATTACAGTGGACGGATT
37708544 GAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAA
1 GAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAA
* *
37708609 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTACCTCCCTGAGATTATA
66 TCTTATCTCCCTGAGATTACAGCGGAGCAGACTAAAGCTAGTAATCCTACCTCCCTGAGATTACA
*
37708674 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTTTGAAGTTACAGTAGAGTAGATCGCATCAGAT
131 GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGAT
* * * *
37708739 TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATT
196 TGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTGAAGCAGATT
37708784 AAAGTAAAGG
Statistics
Matches: 224, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
283 224 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (283 bp):
GAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAA
TCTTATCTCCCTGAGATTACAGCGGAGCAGACTAAAGCTAGTAATCCTACCTCCCTGAGATTACA
GTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGAT
TGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTGAAGCAGATTGAAGCTAGTAATCCTATCTC
CCTGAGATTACAGTGGACGGATT
Found at i:37708812 original size:98 final size:98
Alignment explanation
Indices: 37708636--37708834 Score: 310
Period size: 98 Copynumber: 2.0 Consensus size: 98
37708626 TACAGCGGAG
*
37708636 CAGATTAAAGCTAGTAATCCTACCTCCCTGAGATTATAGTGGAGCAGATTAAAATAAAGGATCTT
1 CAGATTAAAGCTAGTAATCCTACCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
* *
37708701 ATCTCTTTGAAGTTACAGTAGAGTAGATCGCAT
66 ATCTCTTTAAAGTTACAATAGAGTAGATCGCAT
* * * *
37708734 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTT
1 CAGATTAAAGCTAGTAATCCTACCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
*
37708799 ATCT-TTCTAAAGTTACAATTGAGTAGATCGCAT
66 ATCTCTT-TAAAGTTACAATAGAGTAGATCGCAT
37708832 CAG
1 CAG
37708835 GTCTTATCTC
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
97 2 0.02
98 90 0.98
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (98 bp):
CAGATTAAAGCTAGTAATCCTACCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTT
ATCTCTTTAAAGTTACAATAGAGTAGATCGCAT
Found at i:37708984 original size:50 final size:50
Alignment explanation
Indices: 37708912--37709042 Score: 136
Period size: 50 Copynumber: 2.6 Consensus size: 50
37708902 AGTGGAGCAA
** * * * *
37708912 ATTAAAGCCACATCGGTGAATCTTCCTTCCCCGATACTACAGTTAAAAAG
1 ATTAAAGCCACAAAGGCGAATCTTACTTCCCCGACACTACAGTCAAAAAG
* * * * *
37708962 ATTAAAGCCACAAAGGCAAATCTTACTTCCCTGGCAGTGCAGTCAAAAAG
1 ATTAAAGCCACAAAGGCGAATCTTACTTCCCCGACACTACAGTCAAAAAG
* * *
37709012 ATTGAAGCTACAATGGCGAATCTTACTTCCC
1 ATTAAAGCCACAAAGGCGAATCTTACTTCCC
37709043 AAAAGTTGCG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (50 bp):
ATTAAAGCCACAAAGGCGAATCTTACTTCCCCGACACTACAGTCAAAAAG
Found at i:37720931 original size:50 final size:50
Alignment explanation
Indices: 37720815--37720999 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 50
37720805 GAATATAACA
* * * * * *
37720815 TGCCAAAGCTATGTCCCAGA-ATAGTCTTACATGGGATGTT-TCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATATAGG
* *
37720863 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAGG
* ** ** * *
37720913 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAGG
*
37720963 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
37721000 CCTCGGATAA
Statistics
Matches: 114, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
48 20 0.18
49 20 0.18
50 74 0.65
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATAGG
Found at i:37724505 original size:20 final size:20
Alignment explanation
Indices: 37724476--37724523 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
37724466 ATTATTTTAA
*
37724476 AATTATTTTTGACCCA-AATT
1 AATTAATTTT-ACCCATAATT
*
37724496 AATTAATTTTACCTATAATT
1 AATTAATTTTACCCATAATT
37724516 AATTAATT
1 AATTAATT
37724524 ACTTTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (20 bp):
AATTAATTTTACCCATAATT
Found at i:37729443 original size:25 final size:25
Alignment explanation
Indices: 37729402--37729495 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 25
37729392 AGCTCATATG
* *
37729402 AGCTTACCGA-TACTCAGCTCGCATA
1 AGCTTACC-ATTATTCAGCTCGCAGA
** * *
37729427 AGCTTACTTTTATTCAGCTCGGAGG
1 AGCTTACCATTATTCAGCTCGCAGA
* *
37729452 AGCTTACCATTATTCAGCTCGGAGG
1 AGCTTACCATTATTCAGCTCGCAGA
* *
37729477 ACCTTACCATT-TACAGCTC
1 AGCTTACCATTATTCAGCTC
37729496 ATAAGAGCAT
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
24 7 0.12
25 51 0.88
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (25 bp):
AGCTTACCATTATTCAGCTCGCAGA
Found at i:37730818 original size:66 final size:66
Alignment explanation
Indices: 37730712--37730835 Score: 185
Period size: 66 Copynumber: 1.9 Consensus size: 66
37730702 ATCAGACAGT
* * * *
37730712 TGTCAACTGTGGCGACAATTTTGAATGCCATCTAGAATTAACTCATGCAACGACATTACAGATAT
1 TGTCAACTGTGGCGACAATTTTGAACGCAATCTAGAATTAAATCATGCAACGAAATTACAGATAT
37730777 C
66 C
* * *
37730778 TGTCAACTGTGGCGACAATTTTGGACGCAATCTGGAATTAAATCATGTAACGAAATTA
1 TGTCAACTGTGGCGACAATTTTGAACGCAATCTAGAATTAAATCATGCAACGAAATTA
37730836 GTGCAGAAAG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 51 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (66 bp):
TGTCAACTGTGGCGACAATTTTGAACGCAATCTAGAATTAAATCATGCAACGAAATTACAGATAT
C
Found at i:37731421 original size:20 final size:20
Alignment explanation
Indices: 37731388--37731431 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
37731378 TAATGAGAGT
* *
37731388 AAATGCAATGGAAAGTAATA
1 AAATGCAATGGAAAATAAGA
37731408 AAATGCAAAT-GAAAATAAGA
1 AAATGC-AATGGAAAATAAGA
37731428 AAAT
1 AAAT
37731432 TTGAAAGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.61, C:0.05, G:0.16, T:0.18
Consensus pattern (20 bp):
AAATGCAATGGAAAATAAGA
Found at i:37732388 original size:15 final size:15
Alignment explanation
Indices: 37732368--37732396 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37732358 TCATCCACAC
37732368 GGGTTGCAAGTCAAA
1 GGGTTGCAAGTCAAA
37732383 GGGTTGCAAGTCAA
1 GGGTTGCAAGTCAA
37732397 GCTGTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (15 bp):
GGGTTGCAAGTCAAA
Found at i:37739827 original size:19 final size:20
Alignment explanation
Indices: 37739796--37739852 Score: 89
Period size: 19 Copynumber: 2.9 Consensus size: 20
37739786 AAGACTAAGA
37739796 ACCATTCCATTTACTTAGTT
1 ACCATTCCATTTACTTAGTT
*
37739816 ACCATT-CATTTACTTACTT
1 ACCATTCCATTTACTTAGTT
*
37739835 TCCATTCCATTTACTTAG
1 ACCATTCCATTTACTTAG
37739853 CATAAACTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.25, C:0.26, G:0.04, T:0.46
Consensus pattern (20 bp):
ACCATTCCATTTACTTAGTT
Found at i:37741657 original size:56 final size:51
Alignment explanation
Indices: 37741595--37741771 Score: 178
Period size: 50 Copynumber: 3.4 Consensus size: 51
37741585 AATGAGATCT
* * *
37741595 CATGTAAGAACATGTCTGGGACATGGCATTGGCATTACTGATGTTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATAGGCA--ACCGA-G--ATGAGAGGTCC
* *
37741651 CATGTAAGACCATGTTTAGGACATGGCATAGGC-ACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATAGGCAACCGAGATGAGAGGTCC
* * * * ** *
37741701 CACGTAAGACCATGTCTGGGACATGTCATGGGC-ACCGATATGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGGCATAGGCAACCGAGATGAGAGGTCC
*
37741751 CATGTAAGACCATATCTGGGA
1 CATGTAAGACCATGTCTGGGA
37741772 TATGACATTT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
50 71 0.68
52 1 0.01
53 4 0.04
56 29 0.28
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (51 bp):
CATGTAAGACCATGTCTGGGACATGGCATAGGCAACCGAGATGAGAGGTCC
Found at i:37741769 original size:50 final size:50
Alignment explanation
Indices: 37741595--37741826 Score: 173
Period size: 50 Copynumber: 4.5 Consensus size: 50
37741585 AATGAGATCT
* * * **
37741595 CATGTAAGAACATGTCTGGGACATGGCATTGGCATTACTGATGTTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATAGGC---ACCGA-G--ATGAGAACTCC
* * **
37741651 CATGTAAGACCATGTTTAGGACATGGCATAGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATAGGCACCGAGATGAGAACTCC
* * * * *
37741701 CACGTAAGACCATGTCTGGGACATGTCATGGGCACCGATATGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGGCATAGGCACCGAGATGAGAACTCC
* * * ** * * *
37741751 CATGTAAGACCATATCTGGGATATGACATTTGTA--GTACAGGA-AACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATAGGCACCG-AGATGAGAAC-TCC
37741800 CATGTAAGACCATGTCTGGGACATGGC
1 CATGTAAGACCATGTCTGGGACATGGC
37741827 TTTGGCATGT
Statistics
Matches: 147, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
48 4 0.03
49 30 0.20
50 79 0.54
52 1 0.01
53 4 0.03
56 29 0.20
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATAGGCACCGAGATGAGAACTCC
Found at i:37742052 original size:12 final size:12
Alignment explanation
Indices: 37742035--37742073 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
37742025 ATGAGTTATT
37742035 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
37742047 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
37742059 TAAGTGAGTAAG
1 TAAGTAAGCAAG
37742071 TAA
1 TAA
37742074 AGAAGAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:37746042 original size:50 final size:54
Alignment explanation
Indices: 37745931--37746078 Score: 196
Period size: 50 Copynumber: 2.8 Consensus size: 54
37745921 ATTTAAGTAA
* *
37745931 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAAGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CGAAG-TATG
*
37745987 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-CG-AG-ATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAAGTATG
** *
37746037 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37746079 AGTTATTATC
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
50 42 0.49
52 2 0.02
53 1 0.01
55 1 0.01
56 40 0.47
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (54 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAAGTATG
Found at i:37749039 original size:49 final size:51
Alignment explanation
Indices: 37748978--37749163 Score: 184
Period size: 50 Copynumber: 3.7 Consensus size: 51
37748968 TATCATTCGA
* * * * * *
37748978 TACACATAGTAGCCTTCAAATAGTACTACACAGGTGATC-AAA-TTTTCGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTTCCGG
* *
37749027 TTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTTCCGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTTCCGG
* * * *
37749078 TACACATAGTAGCCTGCACATAGTACTACA-ATGTGA-CAATTATCTAT-CGA
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAA-AACCT-TCCGG
* * *
37749128 TACACGTAGTAGCTTGCACTTAGTACTACACACGTG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTG
37749164 TTTATAGGCA
Statistics
Matches: 114, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
49 36 0.32
50 40 0.35
51 38 0.33
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTTCCGG
Done.