Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 124 of 214
Found at i:37749096 original size:51 final size:48
Alignment explanation
Indices: 37748973--37749163 Score: 186
Period size: 49 Copynumber: 3.9 Consensus size: 48
37748963 ATTATTATCA
* * * * **
37748973 TTCGATACACATAGTAGCCTTCAAATAGTACTACACAGGTGATCAAATT
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CAAAAC
* *
37749022 TTCGGTTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAACC
1 TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CAAAA-C
* *
37749072 TTCCGGTACACATAGTAGCCTGCACATAGTACTACA-ATGTGACAATTATC
1 TT-CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACAA--AAC
* * * *
37749122 TATCGATACACGTAGTAGCTTGCACTTAGTACTACACACGTG
1 T-TCGGTACACATAGTAGCCTGCACATAGTACTACACACGTG
37749164 TTTATAGGCA
Statistics
Matches: 118, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 43 0.36
50 38 0.32
51 37 0.31
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (48 bp):
TTCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACAAAAC
Found at i:37749157 original size:101 final size:100
Alignment explanation
Indices: 37748978--37749163 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 100
37748968 TATCATTCGA
* * * *
37748978 TACACATAGTAGCCTTCAAATAGTACTACACAGGTGATCAAATTTTCGGTTCACGTAGTAGCCTG
1 TACACATAGTAGCCTGCAAATAGTACTACACAGGTGATCAAATTATCGATACACGTAGTAGCCTG
37749043 CACATAGTACTACACACGTGACCAAAACCTTCCGG
66 CACATAGTACTACACACGTGACCAAAACCTTCCGG
* *
37749078 TACACATAGTAGCCTGCACATAGTACTACA-ATGTGA-CAATTATCTATCGATACACGTAGTAGC
1 TACACATAGTAGCCTGCAAATAGTACTACACAGGTGATCAA--AT-TATCGATACACGTAGTAGC
* *
37749141 TTGCACTTAGTACTACACACGTG
63 CTGCACATAGTACTACACACGTG
37749164 TTTATAGGCA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
98 3 0.04
99 5 0.07
100 30 0.40
101 37 0.49
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (100 bp):
TACACATAGTAGCCTGCAAATAGTACTACACAGGTGATCAAATTATCGATACACGTAGTAGCCTG
CACATAGTACTACACACGTGACCAAAACCTTCCGG
Found at i:37756750 original size:51 final size:51
Alignment explanation
Indices: 37756633--37756815 Score: 235
Period size: 51 Copynumber: 3.6 Consensus size: 51
37756623 TTCGATGCAT
* * * * * *
37756633 GTAGTAGCCTTCACATAGTACTACACACGTGATC-AAACTTTCCAGTTCAC
1 GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCTTCCGGTACAC
37756683 GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCTTCCGGTACAC
1 GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCTTCCGGTACAC
* ** * *
37756734 ATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTAT-CGATACAC
1 GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCT-TCCGGTACAC
*
37756785 GTAGTAGCCTGCACTTAGTACTACACATGTG
1 GTAGTAGCCTGCACATAGTACTACACATGTG
37756816 TTTATAGACA
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 31 0.26
51 86 0.73
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (51 bp):
GTAGTAGCCTGCACATAGTACTACACATGTGACCAAAACCTTCCGGTACAC
Found at i:37761864 original size:14 final size:15
Alignment explanation
Indices: 37761840--37761868 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
37761830 TGCTATGCTT
37761840 AATGAAATGTTTAGA
1 AATGAAATGTTTAGA
37761855 AATG-AATGTTTAGA
1 AATGAAATGTTTAGA
37761869 TGTTATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (15 bp):
AATGAAATGTTTAGA
Found at i:37767064 original size:27 final size:27
Alignment explanation
Indices: 37767013--37767287 Score: 250
Period size: 27 Copynumber: 10.3 Consensus size: 27
37767003 TGCTAATTGT
* *
37767013 GGGTAAAATGA-TCGAAATACGCTCGAA
1 GGGTAAAATTACT-GAAATACCCTCGAA
37767040 GGGTAAAATTACT-AAATTACCCTCGAA
1 GGGTAAAATTACTGAAA-TACCCTCGAA
*
37767067 GGGTAAAATTA-TCGAAATA---TCGAT
1 GGGTAAAATTACT-GAAATACCCTCGAA
* ** *
37767091 GGCTAAAATTACTGAAATACATTCTAA
1 GGGTAAAATTACTGAAATACCCTCGAA
* *
37767118 GTGTAAAAATTA-TCAAAATACCCTCGAA
1 GGGT-AAAATTACT-GAAATACCCTCGAA
*
37767146 GGGTAAAATTATTGAAATACCCTCGAA
1 GGGTAAAATTACTGAAATACCCTCGAA
** *
37767173 GGGTAAAATTACCAAAATACCCACGAA
1 GGGTAAAATTACTGAAATACCCTCGAA
*
37767200 GGGTAAAATTA-TCAAAATACCCTCGAA
1 GGGTAAAATTACT-GAAATACCCTCGAA
37767227 GGGTAAAATTACTGAAATACCACT--AA
1 GGGTAAAATTACTGAAATACC-CTCGAA
* *
37767253 GGGTAAAATTA-TCGTAATACCC-CTAA
1 GGGTAAAATTACT-GAAATACCCTCGAA
37767279 GGGTAAAAT
1 GGGTAAAAT
37767288 GATCTTTATA
Statistics
Matches: 209, Mismatches: 22, Indels: 35
0.79 0.08 0.13
Matches are distributed among these distances:
24 20 0.10
25 3 0.01
26 35 0.17
27 123 0.59
28 28 0.13
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.24
Consensus pattern (27 bp):
GGGTAAAATTACTGAAATACCCTCGAA
Found at i:37767081 original size:54 final size:53
Alignment explanation
Indices: 37767013--37767287 Score: 276
Period size: 54 Copynumber: 5.2 Consensus size: 53
37767003 TGCTAATTGT
*
37767013 GGGTAAAATGATCGAAATACGCTCGAAGGGTAAAATTACT-AAATTACCCTCGAA
1 GGGTAAAATTATCGAAATAC-CTCGAAGGGTAAAATTACTGAAA-TACCCTCGAA
* * ** *
37767067 GGGTAAAATTATCGAAATA--TCGATGGCTAAAATTACTGAAATACATTCTAA
1 GGGTAAAATTATCGAAATACCTCGAAGGGTAAAATTACTGAAATACCCTCGAA
* * *
37767118 GTGTAAAAATTATCAAAATACCCTCGAAGGGTAAAATTATTGAAATACCCTCGAA
1 GGGT-AAAATTATCGAAATA-CCTCGAAGGGTAAAATTACTGAAATACCCTCGAA
* * * *
37767173 GGGTAAAATTACCAAAATACCCACGAAGGGTAAAATTA-TCAAAATACCCTCGAA
1 GGGTAAAATTATCGAAATA-CCTCGAAGGGTAAAATTACT-GAAATACCCTCGAA
* * * *
37767227 GGGTAAAATTA-CTGAAATACCACTAAGGGTAAAATTA-TCGTAATACCC-CTAA
1 GGGTAAAATTATC-GAAATACCTCGAAGGGTAAAATTACT-GAAATACCCTCGAA
37767279 GGGTAAAAT
1 GGGTAAAAT
37767288 GATCTTTATA
Statistics
Matches: 191, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
51 26 0.14
52 29 0.15
53 28 0.15
54 79 0.41
55 29 0.15
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.24
Consensus pattern (53 bp):
GGGTAAAATTATCGAAATACCTCGAAGGGTAAAATTACTGAAATACCCTCGAA
Found at i:37767281 original size:133 final size:132
Alignment explanation
Indices: 37767013--37767291 Score: 375
Period size: 133 Copynumber: 2.1 Consensus size: 132
37767003 TGCTAATTGT
* * * *
37767013 GGGTAAAATGATCGAAATACGCTCGAAGGGTAAAATTACTAAATTACCCTCGAAGGGTAAAATTA
1 GGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATTACCAAAATACCCACGAAGGGTAAAATTA
* * *
37767078 TCGAAATATCGATGGCTAAAATTACTGAAATACATTCTAAGTGTAAAAATTATCAAAATACCCTC
66 TCAAAATATCGAAGGCTAAAATTACTGAAATACA-TCTAAGGGTAAAAATTATCAAAATACCCTC
37767143 GAA
130 GAA
* *
37767146 GGGTAAAATTATTGAAATACCCTCGAAGGGTAAAATTACCAAAATACCCACGAAGGGTAAAATTA
1 GGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATTACCAAAATACCCACGAAGGGTAAAATTA
* **
37767211 TCAAAATACCCTCGAAGGGTAAAATTACTGAAATACCA-CTAAGGGT-AAAATTATCGTAATACC
66 TCAAAATA---TCGAAGGCTAAAATTACTGAAATA-CATCTAAGGGTAAAAATTATCAAAATACC
*
37767274 C-CTAA
127 CTCGAA
37767279 GGGTAAAATGATC
1 GGGTAAAATGATC
37767292 TTTATACCCC
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
133 80 0.63
134 16 0.13
135 7 0.06
136 22 0.17
137 2 0.02
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.24
Consensus pattern (132 bp):
GGGTAAAATGATCGAAATACCCTCGAAGGGTAAAATTACCAAAATACCCACGAAGGGTAAAATTA
TCAAAATATCGAAGGCTAAAATTACTGAAATACATCTAAGGGTAAAAATTATCAAAATACCCTCG
AA
Found at i:37767298 original size:26 final size:26
Alignment explanation
Indices: 37767134--37767316 Score: 109
Period size: 27 Copynumber: 6.8 Consensus size: 26
37767124 AAATTATCAA
* * * *
37767134 AATACCCTCGAAGGGTAAAATTATTGA
1 AATACCC-CTAAGGGTAAAATGATCGT
* * * **
37767161 AATACCCTCGAAGGGTAAAATTACCAA
1 AATACCC-CTAAGGGTAAAATGATCGT
* * **
37767188 AATACCCACGAAGGGTAAAATTATCAA
1 AATACCC-CTAAGGGTAAAATGATCGT
* * *
37767215 AATACCCTCGAAGGGTAAAATTA-CTGA
1 AATACCC-CTAAGGGTAAAATGATC-GT
* *
37767242 AATACCACTAAGGGTAAAATTATCGT
1 AATACCCCTAAGGGTAAAATGATCGT
*
37767268 AATACCCCTAAGGGTAAAATGATCTT
1 AATACCCCTAAGGGTAAAATGATCGT
*
37767294 TATACCCCT-AGGAGATAAAATGA
1 AATACCCCTAAGG-G-TAAAATGA
37767317 CTGTTATGGC
Statistics
Matches: 138, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
25 3 0.02
26 48 0.35
27 87 0.63
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23
Consensus pattern (26 bp):
AATACCCCTAAGGGTAAAATGATCGT
Found at i:37767323 original size:27 final size:26
Alignment explanation
Indices: 37767243--37767316 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
37767233 AATTACTGAA
* * * *
37767243 ATACCACTAAGGGTAAAATTATCGTA
1 ATACCCCTAAGGGTAAAATGATCTTT
37767269 ATACCCCTAAGGGTAAAATGATCTTT
1 ATACCCCTAAGGGTAAAATGATCTTT
37767295 ATACCCCT-AGGAGATAAAATGA
1 ATACCCCTAAGG-G-TAAAATGA
37767317 CTGTTATGGC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
25 3 0.07
26 31 0.74
27 8 0.19
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.26
Consensus pattern (26 bp):
ATACCCCTAAGGGTAAAATGATCTTT
Found at i:37769949 original size:26 final size:26
Alignment explanation
Indices: 37769900--37769949 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
37769890 CGACGTATAA
* *
37769900 TATTACTGGCAACTTTGCTGCGATTC
1 TATTACTGGCAACTTTACTACGATTC
**
37769926 TATTACTGGCAGTTTTACTACGAT
1 TATTACTGGCAACTTTACTACGAT
37769950 ATTGGTGTGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (26 bp):
TATTACTGGCAACTTTACTACGATTC
Found at i:37770084 original size:28 final size:27
Alignment explanation
Indices: 37770044--37770096 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
37770034 ATGATATTGT
*
37770044 ATTGGGTTAAGGCCCACACTGCTACTAA
1 ATTGGGCTAAGGCCCACACTG-TACTAA
*
37770072 ATTGGGCTAAGGCCCTCACTGTACT
1 ATTGGGCTAAGGCCCACACTGTACT
37770097 GTCACTGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (27 bp):
ATTGGGCTAAGGCCCACACTGTACTAA
Found at i:37777149 original size:23 final size:22
Alignment explanation
Indices: 37777097--37777149 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
37777087 TCCACGTCTT
*
37777097 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
37777119 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
37777142 TTTCTTTT
1 TTTCTTTT
37777150 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:37781770 original size:27 final size:27
Alignment explanation
Indices: 37781732--37782087 Score: 411
Period size: 27 Copynumber: 13.2 Consensus size: 27
37781722 GAATCATGGA
*
37781732 TAAAATGACTGAAATACCCTCGAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
*
37781759 AAAAATTACTGAAATACCCTCGAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
*
37781786 T-AAATTACTGAAATACCCTCAAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
** *
37781812 TAAAATTACAAAAATACCCTCAAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
* *
37781839 TAAAATTACTAAAATACCCTTGAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
*
37781866 TAAAATTA-TCGAAATACCCTTGAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
* *
37781893 TAGAAATTACCGAAATACCCTCAAAGGG
1 TA-AAATTACTGAAATACCCTCGAAGGG
*
37781921 TAAAGTTA-TCGAAATACCCTCGAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
* * *
37781948 TAAAATT-GTCGAAATACTCTTGAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
* ** *
37781975 TAAAATGACCAAAATACCCTCGAAAGG
1 TAAAATTACTGAAATACCCTCGAAGGG
37782002 TAAAATTA-TCGAAATACCCTCGAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
*
37782029 TAAAATTA-TCGAAATACACTCGAAGGG
1 TAAAATTACT-GAAATACCCTCGAAGGG
* *
37782056 TAAAATTACCGAAATACCC-CTAAGGG
1 TAAAATTACTGAAATACCCTCGAAGGG
37782082 TAAAAT
1 TAAAAT
37782088 GATCTTTATA
Statistics
Matches: 286, Mismatches: 34, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
26 38 0.13
27 225 0.79
28 23 0.08
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGAAGGG
Found at i:37786152 original size:19 final size:19
Alignment explanation
Indices: 37786121--37786158 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
37786111 AAAAAATCGG
*
37786121 TAAATAATATTTTATAAAA
1 TAAATAATATTTTAGAAAA
37786140 TAAA-AATATTTTTAGAAAA
1 TAAATAATA-TTTTAGAAAA
37786159 ATTAATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (19 bp):
TAAATAATATTTTAGAAAA
Found at i:37793256 original size:44 final size:44
Alignment explanation
Indices: 37793190--37793480 Score: 158
Period size: 44 Copynumber: 6.7 Consensus size: 44
37793180 CCATCTTCGA
* **
37793190 TCTGCTCCACTACTGCTT-AGGGAGATAAGATTTGCTTACTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTTACTTAG
* * * * **
37793233 TCTGCTCCACTACAACTTCAGGGAGACAAGACTAG---AC-GCG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTTACTTAG
* * * * *
37793273 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGAGATT--TTAA
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-TGCTTACTTAG
* * * * * * ** *
37793317 TCCGCTCAAGTGCGACTTCAGGGAGA-CAGAATTG-TCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCT-TAC-TTAG
* *
37793361 TCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGC-CATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTTA-CTT-AG
* * *
37793406 TCTAC-CTCACTGCAAC-TCCGGAAGGATAAGATTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTTGCTTACTTAG
37793450 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
37793481 CTAGATGTGA
Statistics
Matches: 183, Mismatches: 43, Indels: 43
0.68 0.16 0.16
Matches are distributed among these distances:
40 22 0.12
41 10 0.05
42 3 0.02
43 24 0.13
44 81 0.44
45 42 0.23
46 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTTACTTAG
Found at i:37793698 original size:44 final size:44
Alignment explanation
Indices: 37793593--37793924 Score: 208
Period size: 44 Copynumber: 7.7 Consensus size: 44
37793583 TCCATTAGTT
* * ***
37793593 TGCTCCACTGCAACTTCAGGGAGATAA-AACT-AGA-TGCGATC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAATC
* *
37793634 TGCT-CTCTGTAACTTCAGAGAGATAAGATCTGAGATTTTAATC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAATC
* * * * **
37793677 CGCTCCACTGCAACTTTAGAGAGATAGGAT-TGTCGGCTTTAATC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTG-AGATTTTAATC
* * ** * *
37793721 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGAT-TTTAATC
* * * *
37793766 TGC-CTCACTGCAACTTTAG-GAGGATAAGA-CT-TGCTTACTTAGTC
1 TGCTC-CACTGCAACTTCAGAGA-GATAAGATCTGAGATT--TTAATC
* *
37793810 TGCTCCACTGCAACTTCA-AGGAGATAAGA-CT-AGA-TGTGATC
1 TGCTCCACTGCAACTTCAGA-GAGATAAGATCTGAGATTTTAATC
* * *
37793851 TACT-CTCTACAACTTCAGAGAGATAAGATCTGAGATTTTAAT-
1 TGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAATC
* * *
37793893 TCGCTCCACTGCATCTTCAGGGAGATAGGATC
1 T-GCTCCACTGCAACTTCAGAGAGATAAGATC
37793925 CCGACCACTA
Statistics
Matches: 224, Mismatches: 47, Indels: 37
0.73 0.15 0.12
Matches are distributed among these distances:
40 39 0.17
41 16 0.07
42 8 0.04
43 18 0.08
44 110 0.49
45 33 0.15
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGAGAGATAAGATCTGAGATTTTAATC
Found at i:37793701 original size:141 final size:141
Alignment explanation
Indices: 37793446--37793727 Score: 449
Period size: 141 Copynumber: 2.0 Consensus size: 141
37793436 ATTTGCTTAC
* * *
37793446 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTGCAACTTTAG
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGCAACTTCAG
* *
37793511 AAAGATAAGATCTGAGACTTTAATCCGCTCCACCACAATTTCAGGGAGATAGGATTGTCGGTTTT
66 AAAGATAAGATCTGAGACTTTAATCCGCTCCACCACAATTTCAGAGAGATAGGATTGTCGGCTTT
37793576 AATCTGCTCCA
131 AATCTGCTCCA
* *
37793587 TTAGTTTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGTAACTTCAG
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGCAACTTCAG
* * **
37793652 AGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTT-AGAGAGATAGGATTGTCGGCTT
66 AAAGATAAGATCTGAGACTTTAATCCGCTCCACCACAA-TTTCAGAGAGATAGGATTGTCGGCTT
37793716 TAATCTGCTCCA
130 TAATCTGCTCCA
37793728 CTGCAACTTC
Statistics
Matches: 129, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
141 126 0.98
142 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (141 bp):
TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGCAACTTCAG
AAAGATAAGATCTGAGACTTTAATCCGCTCCACCACAATTTCAGAGAGATAGGATTGTCGGCTTT
AATCTGCTCCA
Found at i:37793900 original size:358 final size:358
Alignment explanation
Indices: 37793229--37793923 Score: 1106
Period size: 358 Copynumber: 1.9 Consensus size: 358
37793219 ATTTGCTTAC
*
37793229 TTAGTCTGCTCCACTACAACTTCAGGGAGACAAGACTAGACGCGATCTGCTCTCTGCAACTTCAG
1 TTAGTCTGCTCCACTACAACTTCAGGGAGACAAAACTAGACGCGATCTGCTCTCTGCAACTTCAG
* * *
37793294 AGAGATAAGATCTGAGATTTTAATCCGCTCAAGTGCGACTTCAGGGAGACAGAATTGTCGGCTTT
66 AGAGATAAGATCTGAGATTTTAATCCGCTCAACTGCAACTTCAGAGAGACAGAATTGTCGGCTTT
37793359 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTC
131 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTC
* * *
37793424 CGGAAGGATAAGATTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGT
196 AGGAAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGT
* * *
37793489 GATCTGCTCTCTGCAACTTTAGAAAGATAAGATCTGAGACTTTAATCCGCTCCACCACAAT-TTC
261 GATCTACTCTCTACAACTTCAGAAAGATAAGATCTGAGACTTTAATCCGCTCCACCAC-ATCTTC
37793553 AGGGAGATAGGATTGTCGGTTTTAATCTGCTCCA
325 AGGGAGATAGGATTGTCGGTTTTAATCTGCTCCA
* * * * *
37793587 TTAGTTTGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGCTCTCTGTAACTTCAG
1 TTAGTCTGCTCCACTACAACTTCAGGGAGACAAAACTAGACGCGATCTGCTCTCTGCAACTTCAG
* * * *
37793652 AGAGATAAGATCTGAGATTTTAATCCGCTCCACTGCAACTTTAGAGAGATAGGATTGTCGGCTTT
66 AGAGATAAGATCTGAGATTTTAATCCGCTCAACTGCAACTTCAGAGAGACAGAATTGTCGGCTTT
* * *
37793717 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTGCCTCACTGCAACTT
131 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAAC-T
*
37793782 TAGG-AGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATG
195 CAGGAAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATG
* * * **
37793846 TGATCTACTCTCTACAACTTCAGAGAGATAAGATCTGAGATTTTAATTCGCTCCACTGCATCTTC
260 TGATCTACTCTCTACAACTTCAGAAAGATAAGATCTGAGACTTTAATCCGCTCCACCACATCTTC
37793911 AGGGAGATAGGAT
325 AGGGAGATAGGAT
37793924 CCCGACCACT
Statistics
Matches: 307, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
357 2 0.01
358 302 0.98
359 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (358 bp):
TTAGTCTGCTCCACTACAACTTCAGGGAGACAAAACTAGACGCGATCTGCTCTCTGCAACTTCAG
AGAGATAAGATCTGAGATTTTAATCCGCTCAACTGCAACTTCAGAGAGACAGAATTGTCGGCTTT
AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTC
AGGAAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGT
GATCTACTCTCTACAACTTCAGAAAGATAAGATCTGAGACTTTAATCCGCTCCACCACATCTTCA
GGGAGATAGGATTGTCGGTTTTAATCTGCTCCA
Found at i:37806734 original size:21 final size:22
Alignment explanation
Indices: 37806693--37806735 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
37806683 TTCGTATGTA
37806693 AAATAAAAATATACAAAAAAAT
1 AAATAAAAATATACAAAAAAAT
*
37806715 AAATAAATATA-ACAACAAAAA
1 AAATAAAAATATACAA-AAAAA
37806736 ACAAGCTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (22 bp):
AAATAAAAATATACAAAAAAAT
Found at i:37814650 original size:39 final size:40
Alignment explanation
Indices: 37814605--37814829 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
37814595 GCTCCTCGTT
* * * *
37814605 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
37814645 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
37814684 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
37814724 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
37814764 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
37814805 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37814830 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 104 0.66
41 15 0.10
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37814838 original size:41 final size:41
Alignment explanation
Indices: 37814761--37814838 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37814751 TTTGTATCTC
* * *
37814761 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37814802 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37814839 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37832016 original size:39 final size:40
Alignment explanation
Indices: 37831971--37832195 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
37831961 GCTCCTCGTT
* * * *
37831971 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
37832011 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
37832050 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
37832090 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
37832130 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
37832171 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37832196 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37832204 original size:41 final size:41
Alignment explanation
Indices: 37832127--37832204 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37832117 TTTGTATCTC
* * *
37832127 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37832168 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37832205 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37846129 original size:21 final size:21
Alignment explanation
Indices: 37846089--37846131 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37846079 GTTGTTGAGA
*
37846089 AGGAAGTTGGTACTGCAGAAG
1 AGGAAGTTGGTACTGAAGAAG
* *
37846110 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGTTGGTACTGAAGAAG
37846131 A
1 A
37846132 AGAAATTGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.37, T:0.21
Consensus pattern (21 bp):
AGGAAGTTGGTACTGAAGAAG
Found at i:37858909 original size:24 final size:22
Alignment explanation
Indices: 37858837--37858912 Score: 62
Period size: 24 Copynumber: 3.1 Consensus size: 22
37858827 TCATTAAGGA
*
37858837 TTATCGATTGCAGCTCGTGAGAGC
1 TTATCGATTTCAGCTC--GAGAGC
* *
37858861 TTACCAATTCTCAGCTCGTATGAGC
1 TTATCGATT-TCAGCTCG-A-GAGC
37858886 TTATCGATTTCAGCTCAAGAGAGC
1 TTATCGATTTCAGCTC--GAGAGC
37858910 TTA
1 TTA
37858913 CCAATTTTGA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
23 1 0.02
24 22 0.52
25 18 0.43
26 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (22 bp):
TTATCGATTTCAGCTCGAGAGC
Found at i:37858909 original size:49 final size:49
Alignment explanation
Indices: 37858837--37858983 Score: 197
Period size: 49 Copynumber: 3.0 Consensus size: 49
37858827 TCATTAAGGA
*
37858837 TTATCGATTGCAGCTCGTGAGAGCTTACCAATTCTCAGCTCGTATGAGC
1 TTATCGATTTCAGCTCGTGAGAGCTTACCAATTCTCAGCTCGTATGAGC
** * *
37858886 TTATCGATTTCAGCTCAAGAGAGCTTACCAATTTTGAGCTCGTATGAGC
1 TTATCGATTTCAGCTCGTGAGAGCTTACCAATTCTCAGCTCGTATGAGC
* * **
37858935 TTACCGATTGT-AGTTCGTGAGAGCTTACTGATTCTCAGCTCGTATGAGC
1 TTATCGATT-TCAGCTCGTGAGAGCTTACCAATTCTCAGCTCGTATGAGC
37858984 ATAATTTGGC
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 83 0.99
50 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (49 bp):
TTATCGATTTCAGCTCGTGAGAGCTTACCAATTCTCAGCTCGTATGAGC
Found at i:37858958 original size:24 final size:25
Alignment explanation
Indices: 37858841--37858977 Score: 122
Period size: 25 Copynumber: 5.6 Consensus size: 25
37858831 TAAGGATTAT
37858841 CGATTG-CAGCTCGTGAGAGCTTAC
1 CGATTGTCAGCTCGTGAGAGCTTAC
* * *
37858865 CAATTCTCAGCTCGT-ATGAGCTTAT
1 CGATTGTCAGCTCGTGA-GAGCTTAC
**
37858890 CGATT-TCAGCTCAAGAGAGCTTAC
1 CGATTGTCAGCTCGTGAGAGCTTAC
* * *
37858914 CAATTTTGAGCTCGT-ATGAGCTTAC
1 CGATTGTCAGCTCGTGA-GAGCTTAC
*
37858939 CGATTGT-AGTTCGTGAGAGCTTAC
1 CGATTGTCAGCTCGTGAGAGCTTAC
* *
37858963 TGATTCTCAGCTCGT
1 CGATTGTCAGCTCGT
37858978 ATGAGCATAA
Statistics
Matches: 89, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
24 43 0.48
25 46 0.52
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (25 bp):
CGATTGTCAGCTCGTGAGAGCTTAC
Found at i:37864032 original size:20 final size:20
Alignment explanation
Indices: 37863993--37864032 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37863983 GATCTAAAAT
* *
37863993 AATAATTTCATTCAATTAAC
1 AATAATTTCATTAAAGTAAC
37864013 AATAATTTCATTAAAGTAAC
1 AATAATTTCATTAAAGTAAC
37864033 TAATTCTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (20 bp):
AATAATTTCATTAAAGTAAC
Found at i:37866421 original size:42 final size:43
Alignment explanation
Indices: 37866357--37866508 Score: 193
Period size: 42 Copynumber: 3.6 Consensus size: 43
37866347 TAACCGTTAC
* * *
37866357 TCGGTGGAATCAGCACCTAGCAACCACCTTTAGAATCAATAAT
1 TCGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAACAAT
* * * **
37866400 TCGG-GGAATCAGCACTTAGCAACC-CCTCTCACAATCAAGGAT
1 TCGGTGGAATCAACACTTAGCAACCACCT-TTAGAATCAACAAT
*
37866442 ACGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAACAAT
1 TCGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAACAAT
37866485 TCGG-GGAATCAACACTTAGCAACC
1 TCGGTGGAATCAACACTTAGCAACC
37866509 CCTCGGGGAA
Statistics
Matches: 94, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
41 3 0.03
42 52 0.55
43 36 0.38
44 3 0.03
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (43 bp):
TCGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAACAAT
Found at i:37866507 original size:26 final size:26
Alignment explanation
Indices: 37866478--37866530 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
37866468 CCTTTAGAAT
*
37866478 CAACAATTCGGGGAATCAACACTTAG
1 CAACAACTCGGGGAATCAACACTTAG
** **
37866504 CAACCCCTCGGGGAATCTGCACTTAG
1 CAACAACTCGGGGAATCAACACTTAG
37866530 C
1 C
37866531 GACCCCTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (26 bp):
CAACAACTCGGGGAATCAACACTTAG
Found at i:37866535 original size:26 final size:26
Alignment explanation
Indices: 37866485--37866537 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
37866475 AATCAACAAT
37866485 TCGGGGAATCAACACTTAGCAACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
** *
37866511 TCGGGGAATCTGCACTTAGCGACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
37866537 T
1 T
37866538 TTTACAGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.34, G:0.23, T:0.19
Consensus pattern (26 bp):
TCGGGGAATCAACACTTAGCAACCCC
Found at i:37866785 original size:15 final size:16
Alignment explanation
Indices: 37866756--37866787 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37866746 AATCCAGTCC
37866756 AAAAATCACATTTTTG
1 AAAAATCACATTTTTG
*
37866772 AAAAATTACATTTTTG
1 AAAAATCACATTTTTG
37866788 CCCCTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (16 bp):
AAAAATCACATTTTTG
Found at i:37875010 original size:19 final size:15
Alignment explanation
Indices: 37874968--37874999 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
37874958 TTATGTATAC
37874968 ATATCATTCAAATTA
1 ATATCATTCAAATTA
37874983 ATATCATTCAAATTA
1 ATATCATTCAAATTA
37874998 AT
1 AT
37875000 CTCAATCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (15 bp):
ATATCATTCAAATTA
Found at i:37880218 original size:26 final size:26
Alignment explanation
Indices: 37880184--37880290 Score: 115
Period size: 26 Copynumber: 4.1 Consensus size: 26
37880174 AACACACCAA
* **
37880184 TATCACAGCAAAGCTGCCAGTATTAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
*
37880210 TAACGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* ** * * *
37880236 TATCACAATAGAGCCGCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
*
37880262 TATCGCAGCAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
37880288 TAT
1 TAT
37880291 TTGTGGCAAA
Statistics
Matches: 63, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.20
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:37880608 original size:80 final size:80
Alignment explanation
Indices: 37880499--37880813 Score: 359
Period size: 80 Copynumber: 3.9 Consensus size: 80
37880489 TACCCCTCTG
* * * *
37880499 GGGTATTTC-GATAATTTTACCCTTCGAGGGCATTTTGGTAATTTTACCCTTCAAGGGTAATTT-
1 GGGTATTTCAG-TAATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGAGGGT-ATTTC
* *
37880562 GGTAATTTTTCTTTTTCA
64 GATAATTTTAC-TTTTCA
* * * *
37880580 -GGTATTTCAGTAATTTTACCTTTTGAGGGTATTTCGGTAATTTTACCCTTC-AGGGTATTTAGA
1 GGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTCGA
* *
37880643 TAATTTTACCCTTTGA
66 TAATTTTA-CTTTTCA
** * * ** * *
37880659 GGGTATTTTGGTAATTTTACCTTTCAAGGGTATTTTAGTAATTTTTCCCATCGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTCGA
*
37880724 TAATTTTACTCTTCA
66 TAATTTTACTTTTCA
*
37880739 TGGGTATTTCAATAATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTCG
1 -GGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTCG
37880804 ATAATTTTAC
65 ATAATTTTAC
37880814 CCACGAATCA
Statistics
Matches: 198, Mismatches: 30, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
78 4 0.02
79 17 0.09
80 93 0.47
81 84 0.42
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.45
Consensus pattern (80 bp):
GGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTCGA
TAATTTTACTTTTCA
Found at i:37880609 original size:53 final size:53
Alignment explanation
Indices: 37880485--37880815 Score: 366
Period size: 54 Copynumber: 6.2 Consensus size: 53
37880475 TATAACGGTC
* * * **
37880485 ATTTTACCCCTCTG-GGGTATTTCGATAATTTTACCCTTCGAGGGCATTTTGGTA
1 ATTTTACCCTTC-GAGGGTATTTCGGTAATTTTACCCTTC-AGGGTATTTCAGTA
* * **
37880539 ATTTTACCCTTCAAGGGTAATTT-GGTAATTTTTCTTTTTCA-GGTATTTCAGTA
1 ATTTTACCCTTCGAGGGT-ATTTCGGTAATTTTAC-CCTTCAGGGTATTTCAGTA
* *
37880592 ATTTTACCTTTTGAGGGTATTTCGGTAATTTTACCCTTCAGGGTATTT-AGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCTTCAGGGTATTTCAG-TA
* * * *
37880645 ATTTTACCCTTTGAGGGTATTTTGGTAATTTTACCTTTCAAGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCTTC-AGGGTATTTCAGTA
* * * *
37880699 ATTTTTCCCATCGAGGGTATTTCGGTAATTTTACTCTTCATGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCTTCA-GGGTATTTCAGTA
*
37880753 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTC-GATA
1 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCTTC-AGGGTATTTCAG-TA
37880807 ATTTTACCC
1 ATTTTACCC
37880816 ACGAATCACA
Statistics
Matches: 235, Mismatches: 31, Indels: 22
0.82 0.11 0.08
Matches are distributed among these distances:
52 10 0.04
53 80 0.34
54 135 0.57
55 10 0.04
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (53 bp):
ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCTTCAGGGTATTTCAGTA
Found at i:37880816 original size:27 final size:27
Alignment explanation
Indices: 37880485--37880815 Score: 318
Period size: 27 Copynumber: 12.3 Consensus size: 27
37880475 TATAACGGTC
*
37880485 ATTTTACCCCTCTG-GGGTATTTCGATA
1 ATTTTACCCTTC-GAGGGTATTTCGATA
* * *
37880512 ATTTTACCCTTCGAGGGCATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
37880539 ATTTTACCCTTCAAGGGTAATTT-GGTA
1 ATTTTACCCTTCGAGGGT-ATTTCGATA
* **
37880566 ATTTTTCTTTTTC-A-GGTATTTC-AGTA
1 ATTTTAC-CCTTCGAGGGTATTTCGA-TA
* * *
37880592 ATTTTACCTTTTGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
37880619 ATTTTACCCTTC-AGGGTATTTAGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
37880645 ATTTTACCCTTTGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
37880672 ATTTTACCTTTCAAGGGTATTT-TAGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* * *
37880699 ATTTTTCCCATCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
37880726 ATTTTACTCTTC-ATGGGTATTTCAATA
1 ATTTTACCCTTCGA-GGGTATTTCGATA
*
37880753 ATTTTACCCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
37880780 ATTTTACCCATCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
37880807 ATTTTACCC
1 ATTTTACCC
37880816 ACGAATCACA
Statistics
Matches: 249, Mismatches: 42, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
25 7 0.03
26 37 0.15
27 197 0.79
28 8 0.03
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:37887197 original size:23 final size:23
Alignment explanation
Indices: 37887150--37887202 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
37887140 ACTTGTAACC
*
37887150 TTCAAAAATAATTCAAAATAGTT
1 TTCAAAAACAATTCAAAATAGTT
* *
37887173 TTCCAAAAACAATTCTAGATA-TT
1 TT-CAAAAACAATTCAAAATAGTT
37887196 TTCAAAA
1 TTCAAAA
37887203 CCATTCCACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 5 0.19
23 6 0.23
24 15 0.58
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.34
Consensus pattern (23 bp):
TTCAAAAACAATTCAAAATAGTT
Found at i:37887862 original size:28 final size:28
Alignment explanation
Indices: 37887822--37887876 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
37887812 CAGTAGCAGT
* * *
37887822 GTGTGGGCCTTAGCCCAAAACAGTAATA
1 GTGTGGACCTTAGCACAAAACAATAATA
37887850 GTGTGGACCTTAGCACAAAACAATAAT
1 GTGTGGACCTTAGCACAAAACAATAAT
37887877 CAATACAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (28 bp):
GTGTGGACCTTAGCACAAAACAATAATA
Found at i:37888073 original size:52 final size:52
Alignment explanation
Indices: 37887981--37888080 Score: 123
Period size: 52 Copynumber: 1.9 Consensus size: 52
37887971 GCCAACACAC
* * *
37887981 CAATATCACAGCAAAGCTGCCAGTATCAGTTACGTAACAAAGCTGCCAGTAA
1 CAATATCACAACAAAGCTACCAGTATCAGTTACGTAACAAAGCAGCCAGTAA
* *
37888033 CAATATCACAATAGAGCTACCAGTATCAG-TATCGCT-ACAAAGCAGCCA
1 CAATATCACAACAAAGCTACCAGTATCAGTTA-CG-TAACAAAGCAGCCA
37888081 ATAATAGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
51 2 0.05
52 38 0.93
53 1 0.02
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (52 bp):
CAATATCACAACAAAGCTACCAGTATCAGTTACGTAACAAAGCAGCCAGTAA
Found at i:37888335 original size:27 final size:27
Alignment explanation
Indices: 37888285--37888561 Score: 299
Period size: 27 Copynumber: 10.3 Consensus size: 27
37888275 TATAACGATT
*
37888285 ATTTTACCCTT-TAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
37888311 ATTTTACCCTTCAAGGGCATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
37888338 ATTTTACCCTTCGAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * ***
37888365 ATTTTTCCCTTCGACGGTATTTTAATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* **
37888392 AATTTACCCTTC-AGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
37888418 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
37888445 ATTTTACCCATCGAGAGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
37888472 ATTTTACCCTTCGACGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
37888499 ATTTTACCTTTTGGGGGTATATT-GGTA
1 ATTTTACCCTTCGAGGGTAT-TTCGGTA
* * * *
37888526 ATGTTACCCATCGAGGGTATTTCAGTG
1 ATTTTACCCTTCGAGGGTATTTCGGTA
37888553 ATTTTACCC
1 ATTTTACCC
37888562 ACAAATCGCA
Statistics
Matches: 210, Mismatches: 37, Indels: 7
0.83 0.15 0.03
Matches are distributed among these distances:
26 36 0.17
27 172 0.82
28 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGGTA
Found at i:37888459 original size:107 final size:107
Alignment explanation
Indices: 37888287--37888562 Score: 322
Period size: 107 Copynumber: 2.6 Consensus size: 107
37888277 TAACGATTAT
* * * * * *
37888287 TTTACCCTTTAGGGTATTTCGGTAATTTTACCCTTCAAGGGCATTTCGGTAATTTTACCCTTCGA
1 TTTACCCTTCAGGGTATTTTGGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGA
* * * *
37888352 GGGTATTT-TGATAATTTTTCCCTTCGACGGTATTTTAATAAA
66 GAGTATTTCAG-TAATTTTACCCTTCGACGGTATTTCAATAAA
*
37888394 TTTACCCTTCAGGGTATTTTAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGA
1 TTTACCCTTCAGGGTATTTTGGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGA
** *
37888459 GAGTATTTCAGTAATTTTACCCTTCGACGGTATTTCGGTAAT
66 GAGTATTTCAGTAATTTTACCCTTCGACGGTATTTCAATAAA
* ** * * * *
37888501 TTTACCTTTTGGGGGTATATTGGTAATGTTACCCATCGAGGGTATTTC-AGTGATTTTACCCA
1 TTTACC-CTTCAGGGTATTTTGGTAATTTTACCCTTCGAGGGTATTTCGA-TAATTTTACCCA
37888563 CAAATCGCAT
Statistics
Matches: 144, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
107 98 0.68
108 46 0.32
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (107 bp):
TTTACCCTTCAGGGTATTTTGGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGA
GAGTATTTCAGTAATTTTACCCTTCGACGGTATTTCAATAAA
Found at i:37894187 original size:19 final size:19
Alignment explanation
Indices: 37894163--37894201 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
37894153 AATTTCATAA
*
37894163 ATTATACCATAAATTTATC
1 ATTATAACATAAATTTATC
37894182 ATTATAACATAAATTTATC
1 ATTATAACATAAATTTATC
37894201 A
1 A
37894202 CATTTTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTATAACATAAATTTATC
Found at i:37895354 original size:35 final size:35
Alignment explanation
Indices: 37895263--37895415 Score: 130
Period size: 35 Copynumber: 4.4 Consensus size: 35
37895253 CGTATGTTTC
* ***
37895263 TGTTAAGCATGCCA-TAATACTGATTCTGATTAATA
1 TGTTAAGCATGCCACT-ATACTGATTTTGATTCGCA
* ** *
37895298 TCTTAAGCATGGTAGTATACTGATTCTT-ATTCGCA
1 TGTTAAGCATGCCACTATACTGATT-TTGATTCGCA
** * * *
37895333 TGTTAAGCATTTCACTTTACTGATTTTGATTAGCG
1 TGTTAAGCATGCCACTATACTGATTTTGATTCGCA
* *
37895368 TGTTAAGCATGCCACTATATTGATTTTGAATCGCA
1 TGTTAAGCATGCCACTATACTGATTTTGATTCGCA
*
37895403 TGTAAAGCATGCC
1 TGTTAAGCATGCC
37895416 TATTGAAACT
Statistics
Matches: 92, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
34 2 0.02
35 88 0.96
36 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (35 bp):
TGTTAAGCATGCCACTATACTGATTTTGATTCGCA
Found at i:37899783 original size:26 final size:26
Alignment explanation
Indices: 37899754--37899810 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
37899744 AAGTGTTTTG
*
37899754 AAACTGATACATGTTATGATAATCTA
1 AAACTGATAAATGTTATGATAATCTA
*
37899780 AAACTGATAAATGTTATGATATTCTA
1 AAACTGATAAATGTTATGATAATCTA
37899806 AAACT
1 AAACT
37899811 ACTGTAGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (26 bp):
AAACTGATAAATGTTATGATAATCTA
Found at i:37909665 original size:21 final size:22
Alignment explanation
Indices: 37909636--37909682 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
37909626 CAGAAGGAGT
*
37909636 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
37909658 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
37909679 GAGT
1 GAGT
37909683 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:37931169 original size:14 final size:14
Alignment explanation
Indices: 37931138--37931180 Score: 65
Period size: 13 Copynumber: 3.3 Consensus size: 14
37931128 TAAGGCCATG
37931138 TTTT-TTTCTTTC-
1 TTTTCTTTCTTTCT
37931150 TTTTCTTTCTTTCT
1 TTTTCTTTCTTTCT
37931164 TTTTCTTTC-TTCT
1 TTTTCTTTCTTTCT
37931177 TTTT
1 TTTT
37931181 ACTATACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
12 4 0.14
13 16 0.55
14 9 0.31
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTCTTTCTTTCT
Found at i:37934797 original size:19 final size:18
Alignment explanation
Indices: 37934744--37934801 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
37934734 TCAGTCATAA
* *
37934744 TACTTTTGTCTTTGTTCT
1 TACTTTTGTTTTTTTTCT
37934762 GTACTTTT-TCTTCTTTTTCT
1 -TACTTTTGT-TT-TTTTTCT
37934782 TACTTTTGATTTTTTTTCT
1 TACTTTTG-TTTTTTTTCT
37934801 T
1 T
37934802 TTTTTTCACA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
18 1 0.03
19 23 0.70
20 8 0.24
21 1 0.03
ACGTcount: A:0.07, C:0.16, G:0.07, T:0.71
Consensus pattern (18 bp):
TACTTTTGTTTTTTTTCT
Found at i:37935989 original size:8 final size:8
Alignment explanation
Indices: 37935941--37935982 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
37935931 AACTAAAATT
*
37935941 AATAATAA
1 AATAAAAA
**
37935949 AATAAACG
1 AATAAAAA
37935957 AATAAAAA
1 AATAAAAA
37935965 AATAAAAA
1 AATAAAAA
37935973 AATAAAAA
1 AATAAAAA
37935981 AA
1 AA
37935983 AATAAAAGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (8 bp):
AATAAAAA
Found at i:37935989 original size:16 final size:16
Alignment explanation
Indices: 37935947--37935989 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
37935937 AATTAATAAT
37935947 AAAATAAACGAATAAAAA
1 AAAATAAA--AATAAAAA
37935965 AATAA-AAAAATAAAAA
1 AA-AATAAAAATAAAAA
37935981 AAAATAAAA
1 AAAATAAAA
37935990 GCAAGAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 2 0.09
16 14 0.61
18 5 0.22
19 2 0.09
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAATAAAAATAAAAA
Found at i:37937984 original size:29 final size:29
Alignment explanation
Indices: 37937942--37938007 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
37937932 GACATCCCTT
37937942 GAGCACATATCATACAAGTATTGAATTTG
1 GAGCACATATCATACAAGTATTGAATTTG
*
37937971 GAGCACATATCATACAAGTATTGACTTTG
1 GAGCACATATCATACAAGTATTGAATTTG
37938000 GAGCACAT
1 GAGCACAT
37938008 GACTAGGTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (29 bp):
GAGCACATATCATACAAGTATTGAATTTG
Found at i:37939601 original size:22 final size:22
Alignment explanation
Indices: 37939551--37939601 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
37939541 AAAAATACCC
37939551 AAAATAAATAGGAAGAGAAAAG
1 AAAATAAATAGGAAGAGAAAAG
**
37939573 AGGATAAATAGGAAGAGAAAAG
1 AAAATAAATAGGAAGAGAAAAG
37939595 AAAATAA
1 AAAATAA
37939602 GAAAAAAGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.10
Consensus pattern (22 bp):
AAAATAAATAGGAAGAGAAAAG
Found at i:37947198 original size:28 final size:28
Alignment explanation
Indices: 37947158--37947214 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
37947148 CAGTATCAGT
* *
37947158 ACAGTGTGGGCCTTAGCCCATTACAATA
1 ACAGTGTGAGCCTTAGCCCAATACAATA
37947186 ACAGTGTGAGCCTTAGCCCAATACAATA
1 ACAGTGTGAGCCTTAGCCCAATACAATA
37947214 A
1 A
37947215 TCAATACAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (28 bp):
ACAGTGTGAGCCTTAGCCCAATACAATA
Found at i:37947353 original size:26 final size:26
Alignment explanation
Indices: 37947324--37947396 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
37947314 CACCAATATC
* * *
37947324 GCAGTAAAGCTGCCAGTAATAGTGAT
1 GCAGCAAAGCTGCCAGTAACAGTAAT
*
37947350 GCAGCAAAGTTGCCAGTAACAGTAAT
1 GCAGCAAAGCTGCCAGTAACAGTAAT
*
37947376 GCAGGAAAGCTGCCAGTAACA
1 GCAGCAAAGCTGCCAGTAACA
37947397 ATATATGTGG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.18
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAACAGTAAT
Found at i:37947719 original size:54 final size:54
Alignment explanation
Indices: 37947576--37947731 Score: 242
Period size: 53 Copynumber: 2.9 Consensus size: 54
37947566 TATAACAATC
* * **
37947576 ATTTTACCCTTAGGGGGTAATTCAATAATTTTACCCTTTGAGGGTATTTCGGTA
1 ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTTCGGTA
*
37947630 ATTTTA-CCTTTGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTTCGGTA
1 ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTTCGGTA
* *
37947683 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCAAGGGTATTT
1 ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTT
37947732 AAGTTATTTG
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 48 0.51
54 46 0.49
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (54 bp):
ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCAAGGGTATTTCGGTA
Found at i:37947721 original size:27 final size:27
Alignment explanation
Indices: 37947576--37947731 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
37947566 TATAACAATC
* * * *
37947576 ATTTTACCCTTAGGGGGTAATTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
37947603 ATTTTACCCTTTGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
37947630 ATTTTA-CCTTTGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
37947656 ATTTTACCCTTCAAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
37947683 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
37947710 ATTTTACCCTTCAAGGGTATTT
1 ATTTTACCCTTCGAGGGTATTT
37947732 AAGTTATTTG
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
26 24 0.21
27 90 0.79
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:37951196 original size:26 final size:26
Alignment explanation
Indices: 37951131--37951200 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
37951121 CTTTACATCG
*
37951131 TTGCTCACACG-AGCTGGGAAATGGGT
1 TTGCTCACA-GAAGCTGTGAAATGGGT
* * *
37951157 TTGCCCATACAAGCTGTGAAATGGGT
1 TTGCTCACAGAAGCTGTGAAATGGGT
37951183 TTGCTCACAGAAGCTGTG
1 TTGCTCACAGAAGCTGTG
37951201 GGTCAAAATG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (26 bp):
TTGCTCACAGAAGCTGTGAAATGGGT
Found at i:37952935 original size:16 final size:16
Alignment explanation
Indices: 37952910--37952940 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37952900 AAATAAATAA
37952910 ATTCAATCTATTTAAT
1 ATTCAATCTATTTAAT
*
37952926 ATTCATTCTATTTAA
1 ATTCAATCTATTTAA
37952941 CTCAATCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTCAATCTATTTAAT
Found at i:37966924 original size:13 final size:13
Alignment explanation
Indices: 37966906--37966935 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
37966896 TATTTCAGGT
37966906 GTTTTGCATTTTG
1 GTTTTGCATTTTG
37966919 GTTTTGCATTTTG
1 GTTTTGCATTTTG
37966932 GTTT
1 GTTT
37966936 ATTTTTCTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.07, C:0.07, G:0.23, T:0.63
Consensus pattern (13 bp):
GTTTTGCATTTTG
Found at i:37977244 original size:29 final size:29
Alignment explanation
Indices: 37977181--37977248 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
37977171 TAATCAACCG
*
37977181 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37977210 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37977239 CGCACACTTA
1 CGCACACTTA
37977249 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37977365 original size:174 final size:174
Alignment explanation
Indices: 37977070--37977397 Score: 629
Period size: 174 Copynumber: 1.9 Consensus size: 174
37977060 AACTCAAGGT
* *
37977070 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37977135 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
37977200 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
37977244 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
37977309 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCGCACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
37977374 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
37977398 TGTACAATTT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 151 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:37977393 original size:29 final size:30
Alignment explanation
Indices: 37977359--37977428 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
37977349 CAACCGCGCG
*
37977359 CACTTAGTGCCATGTAC-TTTAAACTCACA
1 CACTTAGTGCCATGTACATTTAAACCCACA
*
37977388 CACTTAGTG-C-TGTACAATTTAAACCCGCA
1 CACTTAGTGCCATGTAC-ATTTAAACCCACA
37977417 CACTTAGTGCCA
1 CACTTAGTGCCA
37977429 ATCTCATGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 28 0.80
30 1 0.03
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (30 bp):
CACTTAGTGCCATGTACATTTAAACCCACA
Found at i:37985392 original size:29 final size:29
Alignment explanation
Indices: 37985329--37985396 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
37985319 TAATCAACCG
*
37985329 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
37985358 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
37985387 CGCACACTTA
1 CGCACACTTA
37985397 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:37985508 original size:174 final size:174
Alignment explanation
Indices: 37985218--37985545 Score: 638
Period size: 174 Copynumber: 1.9 Consensus size: 174
37985208 AACTCAAGGT
* *
37985218 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37985283 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
37985348 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
37985392 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37985457 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
37985522 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
37985546 TGTACAATTT
Statistics
Matches: 152, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 152 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:37985539 original size:29 final size:30
Alignment explanation
Indices: 37985505--37985576 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
37985495 ATCAACCGCG
*
37985505 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
37985534 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
37985563 CACACTTAGTGCCA
1 CACACTTAGTGCCA
37985577 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:37992855 original size:14 final size:14
Alignment explanation
Indices: 37992836--37992863 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37992826 TAAATTTATA
37992836 TTTAATATTTCATT
1 TTTAATATTTCATT
37992850 TTTAATATTTCATT
1 TTTAATATTTCATT
37992864 AATAAATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTAATATTTCATT
Found at i:37993333 original size:19 final size:19
Alignment explanation
Indices: 37993311--37993348 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
37993301 TTAATCATCC
37993311 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
37993330 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
37993349 ACTCTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:38012208 original size:20 final size:20
Alignment explanation
Indices: 38012183--38012257 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 20
38012173 GATGTAAAAA
*
38012183 AGGGGCACCAAAGTGCAATC
1 AGGGGCACCAGAGTGCAATC
* * *
38012203 AGGGGCATCGGAGTGCAATT
1 AGGGGCACCAGAGTGCAATC
* * * *
38012223 AAGAGCACGAGTGTGCAATC
1 AGGGGCACCAGAGTGCAATC
*
38012243 AGGGGCACCCGAGTG
1 AGGGGCACCAGAGTG
38012258 TAGTCAAGGG
Statistics
Matches: 39, Mismatches: 16, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.29, C:0.21, G:0.36, T:0.13
Consensus pattern (20 bp):
AGGGGCACCAGAGTGCAATC
Found at i:38012278 original size:40 final size:40
Alignment explanation
Indices: 38012195--38012291 Score: 97
Period size: 40 Copynumber: 2.4 Consensus size: 40
38012185 GGGCACCAAA
* * * *
38012195 GTGCAATCAGGGGCATCGGAGTGCAATTAAGAGCACGAGT
1 GTGCAATCAGGGGCACCCGAGTGCAATCAAGAGCACGAAT
* * * *
38012235 GTGCAATCAGGGGCACCCGAGTGTAGTCAAGGGGACGAAT
1 GTGCAATCAGGGGCACCCGAGTGCAATCAAGAGCACGAAT
*
38012275 GTGC-TTACAGGGGCACC
1 GTGCAAT-CAGGGGCACC
38012292 GAAGTGTTTA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.02
40 46 0.98
ACGTcount: A:0.27, C:0.21, G:0.36, T:0.16
Consensus pattern (40 bp):
GTGCAATCAGGGGCACCCGAGTGCAATCAAGAGCACGAAT
Found at i:38012439 original size:13 final size:13
Alignment explanation
Indices: 38012421--38012445 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38012411 ATAAAATTCA
38012421 TTTCAATTCCATT
1 TTTCAATTCCATT
38012434 TTTCAATTCCAT
1 TTTCAATTCCAT
38012446 GAATATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTCAATTCCATT
Found at i:38031482 original size:30 final size:29
Alignment explanation
Indices: 38031447--38031526 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 29
38031437 ATTTTTAAAA
*
38031447 TATTTTTAAAATACTTGTTTTAAA-TTTTTT
1 TATTTTTAAAATA-TT-TTTAAAACTTTTTT
38031477 TATTTTTAAAATATTTTTAAAATCCTTTTTT
1 TATTTTTAAAATATTTTTAAAA--CTTTTTT
*
38031508 TATTTTTTAAAATTTTTTT
1 TA-TTTTTAAAATATTTTT
38031527 TGGTGTTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
28 6 0.14
29 2 0.05
30 13 0.30
31 8 0.18
32 15 0.34
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (29 bp):
TATTTTTAAAATATTTTTAAAACTTTTTT
Found at i:38031506 original size:12 final size:11
Alignment explanation
Indices: 38031425--38031499 Score: 88
Period size: 11 Copynumber: 7.1 Consensus size: 11
38031415 TTTTATTTTT
38031425 TATTTTTAAAA
1 TATTTTTAAAA
38031436 TATTTTTAAAA
1 TATTTTTAAAA
38031447 TATTTTTAAAA
1 TATTTTTAAAA
*
38031458 TACTTGTTTTAAA
1 TA-TT-TTTAAAA
38031471 T-TTTTT----
1 TATTTTTAAAA
38031477 TATTTTTAAAA
1 TATTTTTAAAA
38031488 TATTTTTAAAA
1 TATTTTTAAAA
38031499 T
1 T
38031500 CCTTTTTTTA
Statistics
Matches: 56, Mismatches: 1, Indels: 14
0.79 0.01 0.20
Matches are distributed among these distances:
6 1 0.02
7 5 0.09
10 3 0.05
11 38 0.68
12 2 0.04
13 7 0.12
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:38031523 original size:41 final size:41
Alignment explanation
Indices: 38031420--38031524 Score: 133
Period size: 41 Copynumber: 2.5 Consensus size: 41
38031410 TTATTTTTTA
*
38031420 TTTTTTATTTTTAAAATATTTTTAAAATATTTTTAAAATACT
1 TTTTTTATTTTTTAAA-ATTTTTAAAATATTTTTAAAATACT
* * *
38031462 TGTTTTAAATTTTTT--TATTTTTAAAATATTTTTAAAATCCT
1 T-TTTT-TATTTTTTAAAATTTTTAAAATATTTTTAAAATACT
38031503 TTTTTTATTTTTTAAAATTTTT
1 TTTTTTATTTTTTAAAATTTTT
38031525 TTTGGTGTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
39 7 0.13
40 4 0.08
41 31 0.58
42 1 0.02
43 4 0.08
44 6 0.11
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (41 bp):
TTTTTTATTTTTTAAAATTTTTAAAATATTTTTAAAATACT
Found at i:38031524 original size:11 final size:11
Alignment explanation
Indices: 38031427--38031526 Score: 56
Period size: 11 Copynumber: 9.5 Consensus size: 11
38031417 TTATTTTTTA
*
38031427 TTTTTAAAATA
1 TTTTTAAAATT
*
38031438 TTTTTAAAATA
1 TTTTTAAAATT
38031449 TTTTTAAAATACT
1 TTTTTAAAAT--T
38031462 TGTTTT-AAATT
1 T-TTTTAAAATT
38031473 TTTTT---A--
1 TTTTTAAAATT
*
38031479 TTTTTAAAATA
1 TTTTTAAAATT
38031490 TTTTTAAAATCCT
1 TTTTTAAAAT--T
*
38031503 TTTTT--TA-T
1 TTTTTAAAATT
38031511 TTTTTAAAATT
1 TTTTTAAAATT
38031522 TTTTT
1 TTTTT
38031527 TGGTGTTTAT
Statistics
Matches: 72, Mismatches: 4, Indels: 26
0.71 0.04 0.25
Matches are distributed among these distances:
6 5 0.07
8 7 0.10
9 1 0.01
10 5 0.07
11 40 0.56
13 10 0.14
14 4 0.06
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (11 bp):
TTTTTAAAATT
Found at i:38032276 original size:11 final size:11
Alignment explanation
Indices: 38032240--38032301 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 11
38032230 ACCACCACTT
*
38032240 CACCACCATAG
1 CACCACCCTAG
* *
38032251 CACCACTAC-AC
1 CACCAC-CCTAG
38032262 CACCACCCTAG
1 CACCACCCTAG
* *
38032273 CACCACCGTAT
1 CACCACCCTAG
*
38032284 CACCACCCTTG
1 CACCACCCTAG
38032295 CACCACC
1 CACCACC
38032302 TTAAAAAAAG
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
10 1 0.03
11 38 0.97
ACGTcount: A:0.29, C:0.53, G:0.06, T:0.11
Consensus pattern (11 bp):
CACCACCCTAG
Found at i:38032287 original size:22 final size:22
Alignment explanation
Indices: 38032229--38032301 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
38032219 TTTCCTTGAT
* *
38032229 CACCACCACTTCACCACCATAG
1 CACCACCACATCACCACCCTAG
* *
38032251 CACCACTACACCACCACCCTAG
1 CACCACCACATCACCACCCTAG
** *
38032273 CACCACCGTATCACCACCCTTG
1 CACCACCACATCACCACCCTAG
38032295 CACCACC
1 CACCACC
38032302 TTAAAAAAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.29, C:0.53, G:0.05, T:0.12
Consensus pattern (22 bp):
CACCACCACATCACCACCCTAG
Found at i:38034910 original size:25 final size:24
Alignment explanation
Indices: 38034882--38034929 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
38034872 ATCCGGGCAA
38034882 TATAAC-GAGAAGCTCACAAAGAGCC
1 TATAACAG-GAAGCTC-CAAAGAGCC
*
38034907 TATAACAGGTAGCTCCAAAGAGC
1 TATAACAGGAAGCTCCAAAGAGC
38034930 AATTAACGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 12 0.57
26 1 0.05
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (24 bp):
TATAACAGGAAGCTCCAAAGAGCC
Found at i:38034936 original size:24 final size:24
Alignment explanation
Indices: 38034892--38034960 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
38034882 TATAACGAGA
*
38034892 AGCTCACAAAGAGC-CTATAACAGGT
1 AGCTC-CAAAGAGCAAT-TAACAGGT
*
38034917 AGCTCCAAAGAGCAATTAACGGGT
1 AGCTCCAAAGAGCAATTAACAGGT
**
38034941 AGCTCTGAAGAGCAATTAAC
1 AGCTCCAAAGAGCAATTAAC
38034961 GGGAAGCACT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 33 0.85
25 6 0.15
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (24 bp):
AGCTCCAAAGAGCAATTAACAGGT
Found at i:38034961 original size:24 final size:24
Alignment explanation
Indices: 38034909--38034986 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
38034899 AAAGAGCCTA
* **
38034909 TAACAGGTAGCTCCAAAGAGCAAT
1 TAACGGGTAGCTCTGAAGAGCAAT
38034933 TAACGGGTAGCTCTGAAGAGCAAT
1 TAACGGGTAGCTCTGAAGAGCAAT
* * * *
38034957 TAACGGGAAGCACTGGATAGCAAT
1 TAACGGGTAGCTCTGAAGAGCAAT
38034981 ATAACG
1 -TAACG
38034987 AGAAGTTCAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 41 0.89
25 5 0.11
ACGTcount: A:0.38, C:0.18, G:0.26, T:0.18
Consensus pattern (24 bp):
TAACGGGTAGCTCTGAAGAGCAAT
Found at i:38042405 original size:24 final size:24
Alignment explanation
Indices: 38042371--38042464 Score: 107
Period size: 24 Copynumber: 3.9 Consensus size: 24
38042361 ACTTATCCGG
38042371 GCAATATAACGAGAAGCTCCAAAGA
1 GCAAT-TAACGAGAAGCTCCAAAGA
* * *
38042396 GCAATTAACGGGTAGCTCCGAAGA
1 GCAATTAACGAGAAGCTCCAAAGA
* * *
38042420 GCAATTAACGGGTAGCTCCGAAGA
1 GCAATTAACGAGAAGCTCCAAAGA
* *
38042444 GCAATTAATGAGAAGCACCAA
1 GCAATTAACGAGAAGCTCCAA
38042465 GTAGCCATAG
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
24 56 0.92
25 5 0.08
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.15
Consensus pattern (24 bp):
GCAATTAACGAGAAGCTCCAAAGA
Found at i:38042562 original size:26 final size:26
Alignment explanation
Indices: 38042501--38042556 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
38042491 GAGCACTAAC
*
38042501 GGGAAGCTCACAAAGAGCCTTTAATT
1 GGGAAGCTCACAAAGAGCCTATAATT
*
38042527 GGGAAGCTCACGAAGAGCCATATAA-T
1 GGGAAGCTCACAAAGAGCC-TATAATT
38042553 GGGA
1 GGGA
38042557 CACTCATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.18
Consensus pattern (26 bp):
GGGAAGCTCACAAAGAGCCTATAATT
Found at i:38046996 original size:21 final size:20
Alignment explanation
Indices: 38046967--38047012 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
38046957 TGGAATGCAA
38046967 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
38046988 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
38047008 T-AACC
1 TCAACC
38047013 ATTTCAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:38047946 original size:19 final size:19
Alignment explanation
Indices: 38047915--38047951 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
38047905 TAAGTGCACT
38047915 TTAATTATTTTTT-AAAAA
1 TTAATTATTTTTTGAAAAA
38047933 TTAATTATTTTTTTGAAAA
1 TTAATTA-TTTTTTGAAAA
38047952 GAATTTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 6 0.35
20 4 0.24
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (19 bp):
TTAATTATTTTTTGAAAAA
Found at i:38051507 original size:27 final size:27
Alignment explanation
Indices: 38051473--38051533 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
38051463 CAGAAAGGCT
*
38051473 GTAAAATTA-CTGGAATACCCTCGAAGG
1 GTAAAATTATC-GAAATACCCTCGAAGG
38051500 GTAAAATTATCGAAATACCCTCGAAGG
1 GTAAAATTATCGAAATACCCTCGAAGG
38051527 GTAAAAT
1 GTAAAAT
38051534 GACCGTAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTCGAAGG
Found at i:38051629 original size:24 final size:24
Alignment explanation
Indices: 38051602--38051647 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
38051592 ATTTTCCTGT
*
38051602 GATGTAATTAAATGATTTGTCTAA
1 GATGTAAATAAATGATTTGTCTAA
* *
38051626 GATGTAAATGACTGATTTGTCT
1 GATGTAAATAAATGATTTGTCT
38051648 GTGATTGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.41
Consensus pattern (24 bp):
GATGTAAATAAATGATTTGTCTAA
Found at i:38051658 original size:24 final size:25
Alignment explanation
Indices: 38051614--38051677 Score: 96
Period size: 24 Copynumber: 2.6 Consensus size: 25
38051604 TGTAATTAAA
**
38051614 TGATTTGTCTAAGA-TGTAAATGAC
1 TGATTTGTCTGTGATTGTAAATGAC
38051638 TGATTTGTCTGTGATTG-AAATGAC
1 TGATTTGTCTGTGATTGTAAATGAC
38051662 TGATTTGTCTGTGATT
1 TGATTTGTCTGTGATT
38051678 TGTATCACTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 35 0.95
25 2 0.05
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.44
Consensus pattern (25 bp):
TGATTTGTCTGTGATTGTAAATGAC
Found at i:38051824 original size:27 final size:27
Alignment explanation
Indices: 38051764--38051818 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
38051754 TACTATACTA
38051764 GTGGC-TCTGCCACAATCACTGTAACTG
1 GTGGCTTC-GCCACAATCACTGTAACTG
*
38051791 GTGGCTTCGCCACATAT-ACTGTTACTG
1 GTGGCTTCGCCACA-ATCACTGTAACTG
38051818 G
1 G
38051819 GAGCTTTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.29
Consensus pattern (27 bp):
GTGGCTTCGCCACAATCACTGTAACTG
Found at i:38051844 original size:26 final size:26
Alignment explanation
Indices: 38051806--38051859 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
38051796 TTCGCCACAT
* *
38051806 ATACTGTTACTGGGAGCTTTGTTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
38051832 ATACTGTTGCTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
38051858 AT
1 AT
38051860 GCTATTAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:38051917 original size:32 final size:32
Alignment explanation
Indices: 38051874--38052048 Score: 212
Period size: 32 Copynumber: 5.5 Consensus size: 32
38051864 TTAATGGCTT
*
38051874 TGTGCCGATCATATTACCATTACTGATGGTTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
* * * *
38051906 TGTACCAATCATATTACCATTACTGATGGCTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
*
38051938 TGTGCCGATCATATTACTACTACTGATGGCTT-
1 TGTGCCGATCATATTACTATTACTGATGG-TTG
* *
38051970 TGTGCCGATCATACTACTATTACT-ATGGCTG
1 TGTGCCGATCATATTACTATTACTGATGGTTG
* *
38052001 TGTGCCGATCATATTACTACTACTGAAGGGTT-
1 TGTGCCGATCATATTACTATTACTG-ATGGTTG
*
38052033 TGTGCCAATCATATTA
1 TGTGCCGATCATATTA
38052049 TTGTACTTAT
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.01
31 26 0.21
32 91 0.74
33 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (32 bp):
TGTGCCGATCATATTACTATTACTGATGGTTG
Found at i:38051947 original size:64 final size:62
Alignment explanation
Indices: 38051867--38052048 Score: 256
Period size: 64 Copynumber: 2.9 Consensus size: 62
38051857 GATGCTATTA
* * * *
38051867 ATGGCTTTGTGCCGATCATATTACCATTACTGATGGTTGTGTACCAATCATATTACCATTACT
1 ATGGCTGTGTGCCGATCATATTACTACTACTGATGGTT-TGTGCCAATCATATTACCATTACT
* * *
38051930 GATGGCTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATACTACTATTACT
1 -ATGGCTGTGTGCCGATCATATTACTACTACTGATGG-TTTGTGCCAATCATATTACCATTACT
*
38051994 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTA
1 ATGGCTGTGTGCCGATCATATTACTACTACTG-ATGGTTTGTGCCAATCATATTA
38052049 TTGTACTTAT
Statistics
Matches: 106, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
63 48 0.45
64 56 0.53
65 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (62 bp):
ATGGCTGTGTGCCGATCATATTACTACTACTGATGGTTTGTGCCAATCATATTACCATTACT
Found at i:38052060 original size:63 final size:63
Alignment explanation
Indices: 38051867--38052062 Score: 236
Period size: 63 Copynumber: 3.1 Consensus size: 63
38051857 GATGCTATTA
* * * * * * *
38051867 ATGGCTTTGTGCCGATCATATTACCATTACTG-ATGGTTGTGTACCAATCATATTACCATTACTG
1 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTT-TGTGCCAATCATATTA-CTTTACTT
* * * *
38051931 ATGGCTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATACTACTATTAC-T
1 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTACT-TTACTT
38051994 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTA-TTGTACTT
1 ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTACTT-TACTT
38052057 ATGGCT
1 ATGGCT
38052063 TGTAGCAATT
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
61 1 0.01
62 4 0.04
63 59 0.52
64 46 0.41
65 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.37
Consensus pattern (63 bp):
ATGGCTGTGTGCCGATCATATTACTACTACTGAAGGGTTTGTGCCAATCATATTACTTTACTT
Found at i:38062118 original size:54 final size:54
Alignment explanation
Indices: 38062017--38062183 Score: 214
Period size: 54 Copynumber: 3.1 Consensus size: 54
38062007 TCGTCATTTA
*** *
38062017 TCTTC-TTTCCCCATATGGCATCATAGT-CCAAACTAGGTCTTACACTATGTGG
1 TCTTCTTTTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
38062069 TCTTCTTTTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
1 TCTTCTTTTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
* * * * * *
38062123 TATT-TTATTCCCCATATGATGCCATAATCCCAGACTAGATCTTACACTATATAG
1 TCTTCTT-TTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
38062177 TCTTCTT
1 TCTTCTT
38062184 GACATGACCA
Statistics
Matches: 100, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
52 5 0.05
53 21 0.21
54 72 0.72
55 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (54 bp):
TCTTCTTTTCCCCATATGATGTCATAGTCCCAAACTAGGTCTTACACTATATGG
Found at i:38065218 original size:43 final size:42
Alignment explanation
Indices: 38065128--38065270 Score: 180
Period size: 43 Copynumber: 3.4 Consensus size: 42
38065118 AGGGTTACCA
* *
38065128 AGATTACGTGTAAGACCATATCTGG-GATATGGCATCGATATG
1 AGATTACGTGTAAGACCATGTCTGGACAT-TGGCATCGATATG
*
38065170 AGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCGATATG
1 AGATTACGTGTAAGACCATGTCT-GGACATTGGCATCGATATG
* * * *
38065213 TGATTTCGTGTAAGACCATGGCTGGGCTATTGGCATCGATATG
1 AGATTACGTGTAAGACCATGTCTGGAC-ATTGGCATCGATATG
*
38065256 AGATTACATGTAAGA
1 AGATTACGTGTAAGA
38065271 TCATATTTGG
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
42 24 0.27
43 63 0.71
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATGTCTGGACATTGGCATCGATATG
Found at i:38072632 original size:17 final size:17
Alignment explanation
Indices: 38072602--38072634 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
38072592 TGGGTCCTAA
38072602 AAATGCTTCATCTCCTC
1 AAATGCTTCATCTCCTC
38072619 AAAT-CTTCAGTCTCCT
1 AAATGCTTCA-TCTCCT
38072635 ATGTGGCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATGCTTCATCTCCTC
Found at i:38075256 original size:161 final size:162
Alignment explanation
Indices: 38074979--38075304 Score: 600
Period size: 161 Copynumber: 2.0 Consensus size: 162
38074969 TTGATGATTC
38074979 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
1 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
38075044 CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
66 CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
38075109 CTGCAGTTTGAGG-ATCGTCTTTAATGGCAAT
131 CTGCAGTTTGAGGTATCGTCTTTAATGGCAAT
*
38075140 ACCTGGTGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
1 ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
* * *
38075205 CTACAAAGGTGGCATTATTTGGATGTTTATCTTTCCAGGGAAAATCACCATTCTTGCTACTATCG
66 CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
*
38075270 CTGCAGTTTGAGGTTTCGTCTTTAATGGCAAT
131 CTGCAGTTTGAGGTATCGTCTTTAATGGCAAT
38075302 ACC
1 ACC
38075305 ACCAATATCA
Statistics
Matches: 159, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
161 139 0.87
162 20 0.13
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (162 bp):
ACCTGATGATTTCAAACATGAAGCATCAATAACATTGAAAGTCAAAGAACCAACAGTAGCCTGAT
CTACAAAGGTAGCATTATTTGGATGTTTATCTTTCCAGGGAAAACCACCATTCTTACTACTATCG
CTGCAGTTTGAGGTATCGTCTTTAATGGCAAT
Found at i:38080942 original size:35 final size:35
Alignment explanation
Indices: 38080855--38080950 Score: 104
Period size: 35 Copynumber: 2.7 Consensus size: 35
38080845 ATGAATATTT
* **
38080855 TGATTATGATTCACATGTTAAGCATGCTATTGTTC
1 TGATTATGATTCACATGTTAAGCATGCCATAATTC
** *
38080890 TGCCTATGACTT-GCATGTTAAGCATGCCATAATTC
1 TGATTATGA-TTCACATGTTAAGCATGCCATAATTC
* *
38080925 TGATTTTGATTCACATGTTAAACATG
1 TGATTATGATTCACATGTTAAGCATG
38080951 TCACTGTGTT
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
34 2 0.04
35 44 0.92
36 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (35 bp):
TGATTATGATTCACATGTTAAGCATGCCATAATTC
Found at i:38083926 original size:10 final size:10
Alignment explanation
Indices: 38083913--38083946 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
38083903 GGTTTGTTAT
38083913 TTTTGTAGGA
1 TTTTGTAGGA
38083923 TTTTGTAGGA
1 TTTTGTAGGA
38083933 TTTTGTAGGA
1 TTTTGTAGGA
38083943 TTTT
1 TTTT
38083947 AAGTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (10 bp):
TTTTGTAGGA
Found at i:38083956 original size:20 final size:21
Alignment explanation
Indices: 38083910--38083957 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
38083900 TATGGTTTGT
*
38083910 TATTTTTGTAGGATTTTGTAG
1 TATTTTTGTAGGATTTTGAAG
*
38083931 GA-TTTTGTAGGATTTT-AAG
1 TATTTTTGTAGGATTTTGAAG
38083950 TATTTTTG
1 TATTTTTG
38083958 ATAATGTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 3 0.13
20 19 0.83
21 1 0.04
ACGTcount: A:0.21, C:0.00, G:0.23, T:0.56
Consensus pattern (21 bp):
TATTTTTGTAGGATTTTGAAG
Found at i:38086007 original size:32 final size:32
Alignment explanation
Indices: 38085971--38086036 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
38085961 ATTCTAAAAG
38085971 GTTGTCCTACTAGGACTTAATAACATTAGCTA
1 GTTGTCCTACTAGGACTTAATAACATTAGCTA
38086003 GTTGTCCTACTAGGACTTAATAACATTAGCTA
1 GTTGTCCTACTAGGACTTAATAACATTAGCTA
38086035 GT
1 GT
38086037 ATATGACACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (32 bp):
GTTGTCCTACTAGGACTTAATAACATTAGCTA
Found at i:38089672 original size:18 final size:19
Alignment explanation
Indices: 38089641--38089677 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
38089631 CACAAGTTAG
38089641 TAAGTTCATACATA-CATA
1 TAAGTTCATACATATCATA
38089659 TAAGTTCA-ATCATATCATA
1 TAAGTTCATA-CATATCATA
38089678 GTGAATTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.06
18 12 0.71
19 4 0.24
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.35
Consensus pattern (19 bp):
TAAGTTCATACATATCATA
Found at i:38090392 original size:18 final size:19
Alignment explanation
Indices: 38090346--38090392 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
38090336 AAATAATTTC
38090346 ATTCAATT-AAGTACTTCA
1 ATTCAATTCAAGTACTTCA
*
38090364 ATT-AACCTCAAGTA-TTCA
1 ATTCAA-TTCAAGTACTTCA
38090382 ATTCAATTCAA
1 ATTCAATTCAA
38090393 TCTATAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
17 2 0.08
18 15 0.62
19 7 0.29
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.36
Consensus pattern (19 bp):
ATTCAATTCAAGTACTTCA
Found at i:38092510 original size:37 final size:37
Alignment explanation
Indices: 38092469--38092642 Score: 244
Period size: 37 Copynumber: 4.7 Consensus size: 37
38092459 GGCGGATGTA
*
38092469 TAGCTCTTATGAGCATTTGACGTGTTTACGGTTGGAT
1 TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGAT
*
38092506 TAGCTCTTATGAGCATTTGGCGTGTTTATGGTTGGAT
1 TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGAT
*
38092543 TAGCTCTTATGAGCATTTGATGTGTTTATGGTTGGAT
1 TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGAT
* * *
38092580 TAGCTCTTATGAGCATTCG--GTGCATTATTGGTTAGAT
1 TAGCTCTTATGAGCATTTGACGTG-TTTA-TGGTTGGAT
* *
38092617 TAGCTCTTATGAGCGTTTGGCGTGTT
1 TAGCTCTTATGAGCATTTGACGTGTT
38092643 CAGTTGGACT
Statistics
Matches: 123, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
35 3 0.02
36 3 0.02
37 113 0.92
38 1 0.01
39 3 0.02
ACGTcount: A:0.18, C:0.12, G:0.28, T:0.43
Consensus pattern (37 bp):
TAGCTCTTATGAGCATTTGACGTGTTTATGGTTGGAT
Found at i:38094388 original size:24 final size:25
Alignment explanation
Indices: 38094294--38094416 Score: 88
Period size: 26 Copynumber: 4.9 Consensus size: 25
38094284 ACAACTCTAA
* * *
38094294 TGAGCGTCCCGATATATGGCTCTTCG
1 TGAGCTTCCCGTTA-ATGGCTCTCCG
* * **
38094320 TGAGCTTCCCGATTAAAGTCTCTTTG
1 TGAGCTTCCCG-TTAATGGCTCTCCG
**
38094346 TGAGCTTCTTGATTAATGGCTCTCCG
1 TGAGCTTCCCG-TTAATGGCTCTCCG
*
38094372 -GAGCTTCCCGTTAATGGCTATCCG
1 TGAGCTTCCCGTTAATGGCTCTCCG
* * *
38094396 -GAGCTACCCATTATTGGCTCT
1 TGAGCTTCCCGTTAATGGCTCT
38094417 TATGAGCTTC
Statistics
Matches: 78, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
24 30 0.38
25 8 0.10
26 38 0.49
27 2 0.03
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (25 bp):
TGAGCTTCCCGTTAATGGCTCTCCG
Found at i:38102069 original size:26 final size:26
Alignment explanation
Indices: 38102040--38102112 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
38102030 CCCGATATAT
38102040 GGCTTTTCATGAGCTTTTCGATTAAA
1 GGCTTTTCATGAGCTTTTCGATTAAA
* *
38102066 GGCTCTTT-GTGAGCTTCTT-GATTAAT
1 GGCT-TTTCATGAGCTT-TTCGATTAAA
* *
38102092 GGCTTTCCA-GAGCTTCTCGAT
1 GGCTTTTCATGAGCTTTTCGAT
38102113 ATGGCTCGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
24 1 0.03
25 11 0.29
26 21 0.55
27 5 0.13
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (26 bp):
GGCTTTTCATGAGCTTTTCGATTAAA
Found at i:38104856 original size:36 final size:36
Alignment explanation
Indices: 38104806--38104942 Score: 193
Period size: 36 Copynumber: 3.8 Consensus size: 36
38104796 ATGATTATCG
*
38104806 ATATTCTGATTTGCATGTTAATCATGCCATATTCTA
1 ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
* * *
38104842 ATGTTCTGATTTGCATGTTAAGCTTGCCATATTCTG
1 ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
*
38104878 ATATTCTGATTTGCATGTTAAGCATGCCATTTTCTA
1 ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
* * * *
38104914 ATATTTTGATTCGTATGTAAAGCATGCCA
1 ATATTCTGATTTGCATGTTAAGCATGCCA
38104943 CTGAAAATCT
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 89 1.00
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (36 bp):
ATATTCTGATTTGCATGTTAAGCATGCCATATTCTA
Found at i:38105082 original size:49 final size:49
Alignment explanation
Indices: 38105005--38105104 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 49
38104995 TACGGAGCAA
* * * *
38105005 GTATCTGGCAGTAAATCTACATTTTCTGGTAGCTTGTCCACATTATTCT
1 GTATCTGGCAGTAAATCTACAATATCTGGTAGCTTGACCACACTATTCT
* * * * *
38105054 GTATCTTGCAGTAAATTTGCAATATCTGGTGGTTTGACCACACTATTCT
1 GTATCTGGCAGTAAATCTACAATATCTGGTAGCTTGACCACACTATTCT
38105103 GT
1 GT
38105105 TTCTAGAAAC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (49 bp):
GTATCTGGCAGTAAATCTACAATATCTGGTAGCTTGACCACACTATTCT
Found at i:38106497 original size:107 final size:106
Alignment explanation
Indices: 38106218--38106545 Score: 523
Period size: 107 Copynumber: 3.1 Consensus size: 106
38106208 ATAACATGGA
* * *
38106218 TTGAAA-TTTAAGAGGATATTTGGGTATTTGGTCGAACGAGAAATCAAAACCCAGCACGTTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
* * * * *
38106282 CACGTTTTCTTGAATTTCCAAACGTAAAATATTACCTTGCT
66 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
38106323 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
1 TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
** *
38106388 CACGTTTTCTCGATTTTTTAAACACAAAATATTGCCTTACT
66 CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
* *
38106429 TTGAAATTTTAAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAACACGTTACG
1 TTGAAATTTT-AAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGG
38106494 GCACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
65 GCACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
38106536 TTGAAATTTT
1 TTGAAATTTT
38106546 TGAATTAGAA
Statistics
Matches: 205, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
105 6 0.03
106 98 0.48
107 101 0.49
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (106 bp):
TTGAAATTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGG
CACGTTTTCTCGATTTTCCAAACGCAAAATATTGCCTTACT
Found at i:38108711 original size:44 final size:44
Alignment explanation
Indices: 38108662--38108762 Score: 121
Period size: 44 Copynumber: 2.3 Consensus size: 44
38108652 TCTATTGTAG
* ** *
38108662 CTTCAGGGAGATAGGATTAATAGCTTCAATTTGCTCCGCTACAA
1 CTTCAGGGAGATAGGAATAATAGCTTCAACCTGCTCCACTACAA
* ** * *
38108706 GTTCAGGGAGATAGGAATGGTATCTTCAACCTGCTCCACTGCAA
1 CTTCAGGGAGATAGGAATAATAGCTTCAACCTGCTCCACTACAA
38108750 CTTCAGGGAGATA
1 CTTCAGGGAGATA
38108763 AGGCTTGATG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (44 bp):
CTTCAGGGAGATAGGAATAATAGCTTCAACCTGCTCCACTACAA
Found at i:38108827 original size:85 final size:85
Alignment explanation
Indices: 38108738--38109028 Score: 374
Period size: 85 Copynumber: 3.4 Consensus size: 85
38108728 TCTTCAACCT
* * * *
38108738 GCTCCACTGCAACTTCAGGGAGATAAGGCTTGATGCGATATGCTCTACTACAACTTCAAAAAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGGATTGATGCGATCTGCTCTACTACAACTTCAGAGAGAT
*
38108803 AAGATCTGTGGTTTTATTCC
66 AAGATCTGTGGTTTTAATCC
* *
38108823 GCTCCACTGCAACTTCAGGGAGATAA-AATTGGATGCGATCTACTCTACTACAACTTCAGAGAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGGATT-GATGCGATCTGCTCTACTACAACTTCAGAGAGA
*
38108887 TAAGATCTATGGTTTTAATCC
65 TAAGATCTGTGGTTTTAATCC
* * * *
38108908 GCTCCACTGCAACTTCAGGGAGAT-AGGATTGGTTTCTTCTG-TCTGCTCCACTGCAACTTCAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGGATT-G---ATGC-GATCTGCTCTACTACAACTTCAGA
38108971 GAGATAAGATCTGTGGTTTTAATCC
61 GAGATAAGATCTGTGGTTTTAATCC
* *
38108996 ACTCCACTGCAACTTCAGAGAGAT-AGGATTGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGGATTGAT
38109029 TTCTTCTGTC
Statistics
Matches: 182, Mismatches: 18, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
84 4 0.02
85 103 0.57
87 1 0.01
88 73 0.40
89 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (85 bp):
GCTCCACTGCAACTTCAGGGAGATAAGGATTGATGCGATCTGCTCTACTACAACTTCAGAGAGAT
AAGATCTGTGGTTTTAATCC
Found at i:38108838 original size:44 final size:44
Alignment explanation
Indices: 38108779--38109120 Score: 229
Period size: 44 Copynumber: 7.9 Consensus size: 44
38108769 GATGCGATAT
* * * * *
38108779 GCTCTACTACAACTTCAAAAAGATAAGATCTGTGGTTTTATTCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * *** *
38108823 GCTCCACTGCAACTTCAGGGAGATAA-A-AT-TGGATGCGATCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * *
38108864 ACTCTACTACAACTTCAGAGAGATAAGATCTATGGTTTTAATCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * * ** *
38108908 GCTCCACTGCAACTTCAGGGAGATAGGAT-TG-GTTTCTTCTGTCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTT-TT-AATCC
38108952 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * ** *
38108996 ACTCCACTGCAACTTCAGAGAGATAGGAT-TGAT--TTCTTCTGTCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTG-TGGTT-TT-AATCC
* * * *** *
38109040 GCTCCACTGCAACTTCAGGGAGATAAGA-C--TAGATGCGATCT
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
* * *
38109081 GCTCTATTGCAACTTCAGAGAGATAAGATCTGTAGTTTTA
1 GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
38109121 CCGATCTGTT
Statistics
Matches: 224, Mismatches: 58, Indels: 32
0.71 0.18 0.10
Matches are distributed among these distances:
41 57 0.25
42 8 0.04
43 10 0.04
44 142 0.63
45 4 0.02
46 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCC
Found at i:38108994 original size:88 final size:88
Alignment explanation
Indices: 38108778--38109067 Score: 390
Period size: 88 Copynumber: 3.3 Consensus size: 88
38108768 TGATGCGATA
* * * *
38108778 TGCTCTACTACAACTTCAAAAAGATAAGATCTGTGGTTTTATTCCGCTCCACTGCAACTTCAGGG
1 TGCTCCACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGG
** * *
38108843 AGATAAAATTGG---ATGC-GATC
66 AGATAGGATTGGTTTCTTCTG-TC
* * *
38108863 TACTCTACTACAACTTCAGAGAGATAAGATCTATGGTTTTAATCCGCTCCACTGCAACTTCAGGG
1 TGCTCCACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGG
38108928 AGATAGGATTGGTTTCTTCTGTC
66 AGATAGGATTGGTTTCTTCTGTC
* * *
38108951 TGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGAG
1 TGCTCCACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGG
*
38109016 AGATAGGATTGATTTCTTCTGTC
66 AGATAGGATTGGTTTCTTCTGTC
* *
38109039 TGCTCCACTGCAACTTCAGGGAGATAAGA
1 TGCTCCACTACAACTTCAGAGAGATAAGA
38109068 CTAGATGCGA
Statistics
Matches: 184, Mismatches: 17, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
85 70 0.38
88 113 0.61
89 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (88 bp):
TGCTCCACTACAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGG
AGATAGGATTGGTTTCTTCTGTC
Found at i:38120546 original size:93 final size:94
Alignment explanation
Indices: 38120411--38120798 Score: 305
Period size: 106 Copynumber: 3.9 Consensus size: 94
38120401 AATTTAAGAG
* * * *
38120411 GATATTTGGCAATTTGGTCGAACGAGAAATCAAAATCCAGCACATTAGGGTACTTTTTCTCGAAT
1 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAA-CCAGCACATTAGGGCACATTTTCTCGAAT
*
38120476 TTCCAAACGTAAAATATTACATTGCTTT-A
65 TTCCAAACGCAAAATATTACATTGCTTTAA
* * *
38120505 -ATATTTGGCTATTTGGTCGAACGAGAAATCGACACCTAGCACCTTAGGGCACATTTTCTCGATT
1 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACC-AGCACATTAGGGCACATTTTCTCGAAT
* * **
38120569 TTCCAAACACAAAATATTGCCTTACTTTAAAATTTTAAAA
65 TTCCAAACGCAAAATA-----TTACATT---GCTTT--AA
* * *
38120609 GGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGAGCACGTTTTCTCGAA
1 -GATATTTGGCTATTTGGTCGAACGAGAAATCGAAA-CCAGCACATTAGGGCACATTTTCTCGAA
* *
38120674 TTTCCAAACGCAAAATATTGCCTTGCTTTGAAATTTTAAAA
64 TTTCCAAACGCAAAATATTACATTGC--------TTT--AA
* ** *
38120715 GGATATTTGGCTATTTGGTCGAAAGAGAAATCGAAACCCAATACGTTAGGGCA-AGTTTTCTCGA
1 -GATATTTGGCTATTTGGTCGAACGAGAAATCGAAA-CCAGCACATTAGGGCACA-TTTTCTCGA
* *
38120779 TTTTCGAAACGCAAAATATT
63 ATTTCCAAACGCAAAATATT
38120799 GCCTTTGAAA
Statistics
Matches: 241, Mismatches: 29, Indels: 36
0.79 0.09 0.12
Matches are distributed among these distances:
92 2 0.01
93 68 0.28
98 6 0.02
101 8 0.03
104 1 0.00
106 154 0.64
107 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (94 bp):
GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCAGCACATTAGGGCACATTTTCTCGAATT
TCCAAACGCAAAATATTACATTGCTTTAA
Found at i:38120690 original size:106 final size:106
Alignment explanation
Indices: 38120505--38120803 Score: 472
Period size: 106 Copynumber: 2.8 Consensus size: 106
38120495 CATTGCTTTA
* * * *
38120505 ATATTTGGCTATTTGGTCGAACGAGAAATCGACACCTAGCACCTTAGGGCACATTTTCTCGATTT
1 ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTT
*
38120570 TCCAAACACAAAATATTGCCTTACTTTAAAATTTTAAAAGG
66 TCCAAACGCAAAATATTGCCTTACTTTAAAATTTTAAAAGG
* *
38120611 ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGAGCACGTTTTCTCGAATT
1 ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTT
* *
38120676 TCCAAACGCAAAATATTGCCTTGCTTTGAAATTTTAAAAGG
66 TCCAAACGCAAAATATTGCCTTACTTTAAAATTTTAAAAGG
* ** *
38120717 ATATTTGGCTATTTGGTCGAAAGAGAAATCGAAACCCAATACGTTAGGGCAAGTTTTCTCGATTT
1 ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTT
*
38120782 TCGAAACGCAAAATATTGCCTT
66 TCCAAACGCAAAATATTGCCTT
38120804 TGAAATTTTT
Statistics
Matches: 177, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
106 177 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (106 bp):
ATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATTT
TCCAAACGCAAAATATTGCCTTACTTTAAAATTTTAAAAGG
Found at i:38122870 original size:16 final size:16
Alignment explanation
Indices: 38122851--38122914 Score: 64
Period size: 16 Copynumber: 4.2 Consensus size: 16
38122841 CCTTAGACTT
38122851 TGAAAACTATAGATTC
1 TGAAAACTATAGATTC
* *
38122867 TGAAAACTAT--ACTG
1 TGAAAACTATAGATTC
38122881 TG-AAACTATAGATTC
1 TGAAAACTATAGATTC
*
38122896 -GAAAAACTATAGATAC
1 TG-AAAACTATAGATTC
38122912 TGA
1 TGA
38122915 TACTCTAGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
13 7 0.18
14 5 0.13
15 2 0.05
16 23 0.61
17 1 0.03
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.28
Consensus pattern (16 bp):
TGAAAACTATAGATTC
Found at i:38123790 original size:24 final size:25
Alignment explanation
Indices: 38123759--38123807 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
38123749 TAGTGGAGAA
38123759 AACCAAAA-TTTGGAGGAAGTGAAG
1 AACCAAAATTTTGGAGGAAGTGAAG
38123783 AACCAAAATTTTGGAGGAAGTGAAG
1 AACCAAAATTTTGGAGGAAGTGAAG
38123808 CGTTTGGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.45, C:0.08, G:0.29, T:0.18
Consensus pattern (25 bp):
AACCAAAATTTTGGAGGAAGTGAAG
Found at i:38127884 original size:33 final size:33
Alignment explanation
Indices: 38127844--38127910 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
38127834 TGATCGAGAA
38127844 GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
1 GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
38127877 GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
1 GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
38127910 G
1 G
38127911 TAGCATTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.18, C:0.15, G:0.40, T:0.27
Consensus pattern (33 bp):
GGGTTTTGGGCCAAAGGAATGGGCACGTTCTTG
Found at i:38131616 original size:26 final size:26
Alignment explanation
Indices: 38131584--38131647 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
38131574 ACAAATTTTC
*
38131584 TCAAAATTTTACCGAGGGTAAAATTG
1 TCAAAATTTTACCGAGGGTAAAATCG
* **
38131610 TTAAAATTTTGTCGAGGGTAAAATCG
1 TCAAAATTTTACCGAGGGTAAAATCG
*
38131636 TCAAATTTTTAC
1 TCAAAATTTTAC
38131648 AATAGTAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (26 bp):
TCAAAATTTTACCGAGGGTAAAATCG
Found at i:38136978 original size:101 final size:101
Alignment explanation
Indices: 38136863--38137047 Score: 268
Period size: 101 Copynumber: 1.8 Consensus size: 101
38136853 AAAGTGATGG
** *
38136863 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAT-G-ATGGGTCGCATGTGTAGC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCGG-ATGGAAT-GGTCACATGTGTAGC
38136926 ACTATGTGTAGG-CTACTATGCGTACCGGATAGTTTCGA
64 ACTATGTGTAGGAC-ACTATGCGTACCGGATAGTTTCGA
* *
38136964 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCGGATGG-AATGGTCACATGTGTAGCA
38137029 CTATGTGTAGGACACTATG
65 CTATGTGTAGGACACTATG
38137048 TGAACCGAAC
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
100 2 0.03
101 39 0.52
102 31 0.41
103 3 0.04
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCGGATGGAATGGTCACATGTGTAGCAC
TATGTGTAGGACACTATGCGTACCGGATAGTTTCGA
Found at i:38137006 original size:51 final size:51
Alignment explanation
Indices: 38136859--38137054 Score: 202
Period size: 51 Copynumber: 3.9 Consensus size: 51
38136849 ATTGAAAGTG
* *
38136859 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* * * *
38136908 ATGGGTCGCATGTGTAGCACTATGTGTAGGCTACTATGCGTACCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* * * ** * *
38136959 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* *
38137011 ATGGTCACATGTGTAGTACTATGTGTAGGAC-ACTATGTGAACCG
1 ATGGTCACATGTGTAGTACTATGTGCAGG-CTACTATGTGTACCG
38137055 AACATCACTG
Statistics
Matches: 117, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
49 2 0.02
50 39 0.33
51 73 0.62
52 3 0.03
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
Found at i:38145012 original size:25 final size:25
Alignment explanation
Indices: 38144975--38145033 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
38144965 TCTTGTACAT
* *
38144975 GTATGCTCATACGAGCTGTGAATTA
1 GTATGCTCATACGAGCTATAAATTA
*
38145000 GTATGCTCTTACGAGCTATAAATTA
1 GTATGCTCATACGAGCTATAAATTA
*
38145025 GTAAGCTCA
1 GTATGCTCA
38145034 GATGAGCAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATAAATTA
Done.