Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 13 of 214
Found at i:3646135 original size:13 final size:13
Alignment explanation
Indices: 3646113--3646142 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
3646103 TAAAGTATTT
*
3646113 TAAAATTAAAAAA
1 TAAAAATAAAAAA
3646126 TAAAAATAAAAAA
1 TAAAAATAAAAAA
3646139 TAAA
1 TAAA
3646143 TATTTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:3646875 original size:89 final size:93
Alignment explanation
Indices: 3646760--3646979 Score: 279
Period size: 94 Copynumber: 2.4 Consensus size: 93
3646750 GTAAATTTTT
* *
3646760 AAATAATTA-TTAATATTTTTGCATATTTTCTA-ATTTTTTATAGTTTTGCA-CT-TGT-TTAGA
1 AAAT-ATTATTTAATATTTTTGTATATTTTCTATATTTTTTATAGTTTTACACCTATGTATTAGA
* *
3646820 ATGAAATGGACAAATGTATATCCAGATTC
65 ATGAAATGAACAAATGTATATCCAGATCC
* * * *
3646849 AAATATTATTTAATATTTTTTTATATTTTCTATTTTTTTTATATTTTTACACCTATTTAATTAGA
1 AAATATTATTTAATATTTTTGTATATTTTCTATATTTTTTATAGTTTTACACCTATGT-ATTAGA
* *
3646914 ATGAAATGAAGAAATGTGTATCCAGATCC
65 ATGAAATGAACAAATGTATATCCAGATCC
* *
3646943 AAATATTATTTAATATTTTTGTATGTTTTTTATATTT
1 AAATATTATTTAATATTTTTGTATATTTTCTATATTT
3646980 ATTTTTTGTA
Statistics
Matches: 111, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
88 4 0.04
89 25 0.23
90 15 0.14
91 2 0.02
92 2 0.02
94 63 0.57
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.51
Consensus pattern (93 bp):
AAATATTATTTAATATTTTTGTATATTTTCTATATTTTTTATAGTTTTACACCTATGTATTAGAA
TGAAATGAACAAATGTATATCCAGATCC
Found at i:3646876 original size:10 final size:10
Alignment explanation
Indices: 3646851--3646896 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
3646841 CCAGATTCAA
* *
3646851 ATATTATTTA
1 ATATTTTTTT
3646861 ATATTTTTTT
1 ATATTTTTTT
*
3646871 ATA-TTTTCT
1 ATATTTTTTT
3646880 AT-TTTTTTT
1 ATATTTTTTT
3646889 ATATTTTT
1 ATATTTTT
3646897 ACACCTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
9 14 0.47
10 16 0.53
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (10 bp):
ATATTTTTTT
Found at i:3647007 original size:94 final size:93
Alignment explanation
Indices: 3646760--3647019 Score: 264
Period size: 94 Copynumber: 2.8 Consensus size: 93
3646750 GTAAATTTTT
* * *
3646760 AAATAATTA-TTAATATTTTTGCATATTTTCTA----ATTTTTTATAGTTTTGCACTTGTTTAGA
1 AAAT-ATTATTTAATATTTTTGTATATTTTCTATTTTATTTTTTATAGTTCTGTACTTGTTTAGA
* *
3646820 ATGAAATGGACAAATGTATATCCAGATTC
65 ATGAAATGAACAAATGTATATCCAGATCC
* * ** ** * **
3646849 AAATATTATTTAATATTTTTTTATATTTTCTATTTT-TTTTATATTTTTACACCTATTTAATTAG
1 AAATATTATTTAATATTTTTGTATATTTTCTATTTTATTTTTTATAGTT-C-TGTACTTGTTTAG
* *
3646913 AATGAAATGAAGAAATGTGTATCCAGATCC
64 AATGAAATGAACAAATGTATATCCAGATCC
* * *
3646943 AAATATTATTTAATATTTTTGTATGTTTTTTATATTTATTTTTTGTAGTTCTGTACTTGTTTAG-
1 AAATATTATTTAATATTTTTGTATATTTTCTAT-TTTATTTTTTATAGTTCTGTACTTGTTTAGA
3647007 ATGAAATGAACAA
65 ATGAAATGAACAA
3647020 CCATTCATTC
Statistics
Matches: 133, Mismatches: 29, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
88 4 0.03
89 25 0.19
92 9 0.07
93 12 0.09
94 71 0.53
95 4 0.03
96 8 0.06
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (93 bp):
AAATATTATTTAATATTTTTGTATATTTTCTATTTTATTTTTTATAGTTCTGTACTTGTTTAGAA
TGAAATGAACAAATGTATATCCAGATCC
Found at i:3647999 original size:4 final size:4
Alignment explanation
Indices: 3647990--3648026 Score: 65
Period size: 4 Copynumber: 9.0 Consensus size: 4
3647980 CATTTCGCGC
3647990 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTATA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTA-A TTAA
3648027 ATTGAAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 28 0.88
5 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (4 bp):
TTAA
Found at i:3669203 original size:16 final size:16
Alignment explanation
Indices: 3669179--3669217 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
3669169 TAGATGTATT
3669179 CATTAGAAAAATGATA
1 CATTAGAAAAATGATA
*
3669195 CATTGGAAAAATGATA
1 CATTAGAAAAATGATA
*
3669211 AATTAGA
1 CATTAGA
3669218 CTGGACCCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.15, T:0.26
Consensus pattern (16 bp):
CATTAGAAAAATGATA
Found at i:3669359 original size:51 final size:51
Alignment explanation
Indices: 3669304--3669404 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 51
3669294 AATTCCGAGT
*
3669304 TAGTCATTAACCATGCATATGTAACTCATGTGCTTTTATATAAGTGGAGGA
1 TAGTCATTAACCATGCATACGTAACTCATGTGCTTTTATATAAGTGGAGGA
3669355 TAGTCATTAACCATGCATACGTAACTCATGTGCTTTTATATAAGTGGAGG
1 TAGTCATTAACCATGCATACGTAACTCATGTGCTTTTATATAAGTGGAGG
3669405 CTTATGCTCT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35
Consensus pattern (51 bp):
TAGTCATTAACCATGCATACGTAACTCATGTGCTTTTATATAAGTGGAGGA
Found at i:3671836 original size:43 final size:42
Alignment explanation
Indices: 3671769--3671976 Score: 226
Period size: 43 Copynumber: 4.9 Consensus size: 42
3671759 AAAAACGTCT
* * *
3671769 CTATAGAACATAGCCTTTAACGGCGCTTTTCCCACAAACGCCG
1 CTATAGAACAT-GACTTTAGCGGCGCTTTTCCCACAAATGCCG
*
3671812 TTATAGAACATGACTTCTAGCGGCGC---TCCCTACAAATGCCG
1 CTATAGAACATGACTT-TAGCGGCGCTTTTCCC-ACAAATGCCG
** *
3671853 CTATAGAACATGACGTTTAGCGATG-TTTTCCCTACAAATGCAG
1 CTATAGAACATGAC-TTTAGCGGCGCTTTTCCC-ACAAATGCCG
* *
3671896 CTAAAGAACATGACTTTTAGCGGCGCTTTTACCACAAATGCCG
1 CTATAGAACATGAC-TTTAGCGGCGCTTTTCCCACAAATGCCG
* *
3671939 CTATAGAACATGACCTTTAGTGGCGCTTTTCCCGCAAA
1 CTATAGAACATGA-CTTTAGCGGCGCTTTTCCCACAAA
3671977 CACCGTTAAA
Statistics
Matches: 139, Mismatches: 18, Indels: 16
0.80 0.10 0.09
Matches are distributed among these distances:
40 4 0.03
41 28 0.20
42 6 0.04
43 94 0.68
44 7 0.05
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (42 bp):
CTATAGAACATGACTTTAGCGGCGCTTTTCCCACAAATGCCG
Found at i:3674090 original size:28 final size:25
Alignment explanation
Indices: 3674041--3674091 Score: 66
Period size: 28 Copynumber: 1.9 Consensus size: 25
3674031 AATTAAAAAA
*
3674041 TCGTAAAATCTTACTACATCATGGT
1 TCGTAAAATCTTACCACATCATGGT
3674066 TCGTAAATATCTTCATCCACATCATG
1 TCGTAAA-ATCTT-A-CCACATCATG
3674092 ACGAACCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 5 0.23
27 1 0.05
28 9 0.41
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (25 bp):
TCGTAAAATCTTACCACATCATGGT
Found at i:3676360 original size:25 final size:25
Alignment explanation
Indices: 3676325--3676380 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
3676315 ACAAGGCGAA
* * *
3676325 GCAGCAGAGGGATGCTGACGGAGAT
1 GCAGCAAAGGGATACCGACGGAGAT
* *
3676350 GCAGCAAAGGGCTACCGACGGTGAT
1 GCAGCAAAGGGATACCGACGGAGAT
3676375 GCAGCA
1 GCAGCA
3676381 GACGTTAGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.21, G:0.39, T:0.11
Consensus pattern (25 bp):
GCAGCAAAGGGATACCGACGGAGAT
Found at i:3676631 original size:135 final size:133
Alignment explanation
Indices: 3676387--3676633 Score: 306
Period size: 135 Copynumber: 1.8 Consensus size: 133
3676377 AGCAGACGTT
* *
3676387 AGGGATTTCGGGGAGGGGGGAACTGATTTGGGGAAAAAAGTAGGGGAAAAATAAAGGGAATTGGG
1 AGGGATTTCAGAGAGGGGGGAACTGATTTGGGGAAAAAAGTAGGGGAAAAATAAAGGGAATTGGG
3676452 AAAAATATTAGAGATTTCAGGGAAGGGGAGAACTGATTTGGGGAAAATAGAACGGGAAAAAAAGA
66 AAAAATATTAGAGATTTCAGGGAAGGGGAGAACTGATTTGGGGAAAATAGAACGGGAAAAAAAGA
3676517 GAA
131 GAA
* * * *
3676520 AGGGATTTCAGAGA-GGGGGAACTGATTTGGGGGAAATGAA-TTGGGGAAAAATGGGAAGGG-TT
1 AGGGATTTCAGAGAGGGGGGAACTGATTT-GGGGAAA-AAAGTAGGGGAAAAAT--AAAGGGAAT
* * * *
3676582 CTGGGAAAATTACTTAGGGATTT-TGGGAAGAGGG-GAACTGATTTTGGGAAAA
62 -TGGGAAAAATA-TTAGAGATTTCAGGGAAG-GGGAGAACTGATTTGGGGAAAA
3676634 AGACCAAGGC
Statistics
Matches: 97, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
132 14 0.14
133 30 0.31
134 3 0.03
135 38 0.39
136 12 0.12
ACGTcount: A:0.38, C:0.04, G:0.38, T:0.20
Consensus pattern (133 bp):
AGGGATTTCAGAGAGGGGGGAACTGATTTGGGGAAAAAAGTAGGGGAAAAATAAAGGGAATTGGG
AAAAATATTAGAGATTTCAGGGAAGGGGAGAACTGATTTGGGGAAAATAGAACGGGAAAAAAAGA
GAA
Found at i:3678595 original size:7 final size:7
Alignment explanation
Indices: 3678583--3678611 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
3678573 AACAATAGAC
3678583 GGTAGTG
1 GGTAGTG
3678590 GGTAGTG
1 GGTAGTG
3678597 GGTAGTG
1 GGTAGTG
3678604 GGTAGTG
1 GGTAGTG
3678611 G
1 G
3678612 AATGGTACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.59, T:0.28
Consensus pattern (7 bp):
GGTAGTG
Found at i:3681836 original size:17 final size:17
Alignment explanation
Indices: 3681797--3681839 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
3681787 AAATTTGAAT
*
3681797 TTTTAGATTTTATATATA
1 TTTTA-ATTTTATATAAA
3681815 TTTTAATTTTATA-AAA
1 TTTTAATTTTATATAAA
3681831 TGTTTAATT
1 T-TTTAATT
3681840 GACTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 3 0.13
17 15 0.65
18 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
TTTTAATTTTATATAAA
Found at i:3682695 original size:29 final size:30
Alignment explanation
Indices: 3682662--3682729 Score: 111
Period size: 29 Copynumber: 2.3 Consensus size: 30
3682652 GATGTGAATG
* *
3682662 GATTTTTTATTATTTTATGAGGG-TTAATT
1 GATTTTTAATTATTTTAAGAGGGTTTAATT
3682691 GATTTTTAATTATTTTAAGAGGGTTTAATT
1 GATTTTTAATTATTTTAAGAGGGTTTAATT
3682721 GATTTTTAA
1 GATTTTTAA
3682730 GGATTATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 21 0.58
30 15 0.42
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (30 bp):
GATTTTTAATTATTTTAAGAGGGTTTAATT
Found at i:3682809 original size:21 final size:22
Alignment explanation
Indices: 3682771--3682811 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
3682761 ATTTTTTAAA
* *
3682771 ATATTAAAATATCTTAAAATTT
1 ATATAAAAATAACTTAAAATTT
3682793 ATATAAAAATAAC-TAAAAT
1 ATATAAAAATAACTTAAAAT
3682812 GAAAAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATAAAAATAACTTAAAATTT
Found at i:3683359 original size:40 final size:40
Alignment explanation
Indices: 3683307--3683415 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 40
3683297 AAAAATAAAA
* * *
3683307 AATAGTAAATGTTATAAAATATTATTAATATGTTATGAAAT
1 AATAGAAAATGTTATAAAATATTATTAAAAAGTTA-GAAAT
*
3683348 AAT-GAAAATGTTAAATAAATATTA-TAAAAAGTTAGAAAT
1 AATAGAAAATGTTATA-AAATATTATTAAAAAGTTAGAAAT
* *
3683387 GATAGAAAAT-TATATAAAA-ATAATTAAAA
1 AATAGAAAATGT-TATAAAATATTATTAAAA
3683416 TGATAAAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
38 3 0.05
39 16 0.28
40 27 0.47
41 11 0.19
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (40 bp):
AATAGAAAATGTTATAAAATATTATTAAAAAGTTAGAAAT
Found at i:3683360 original size:19 final size:20
Alignment explanation
Indices: 3683313--3683360 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
3683303 AAAAAATAGT
*
3683313 AAATGTTATAAAATATTATTA
1 AAATGTTATAAAATA-TATGA
* *
3683334 ATATGTTATGAAATA-ATGA
1 AAATGTTATAAAATATATGA
3683353 AAATGTTA
1 AAATGTTA
3683361 AATAAATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 10 0.43
21 13 0.57
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (20 bp):
AAATGTTATAAAATATATGA
Found at i:3683423 original size:18 final size:18
Alignment explanation
Indices: 3683398--3683442 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
3683388 ATAGAAAATT
* *
3683398 ATATAAAAATAAT-TAAA
1 ATATAAAAAAAATAAAAA
3683415 ATGATAAAAAAAATAAAAA
1 AT-ATAAAAAAAATAAAAA
3683434 ATATAAAAA
1 ATATAAAAA
3683443 GTTGTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.08
18 17 0.71
19 5 0.21
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (18 bp):
ATATAAAAAAAATAAAAA
Found at i:3685247 original size:15 final size:17
Alignment explanation
Indices: 3685228--3685270 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
3685218 TTTTTAAATT
*
3685228 TTTTTATATATTTGT-A
1 TTTTTATATATTTATAA
*
3685244 TTTTT-TATTTTTATAA
1 TTTTTATATATTTATAA
3685260 TTTTTATATAT
1 TTTTTATATAT
3685271 GGTATATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 7 0.32
16 11 0.50
17 4 0.18
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTTATATATTTATAA
Found at i:3685279 original size:33 final size:33
Alignment explanation
Indices: 3685203--3685280 Score: 88
Period size: 33 Copynumber: 2.3 Consensus size: 33
3685193 TTTATCATTT
3685203 TGTATATATTTTTACTTTTTAAATTTTTTTATATA
1 TGTATAT-TTTTTACTTTTTAAA-TTTTTTATATA
* *
3685238 TTTGTATTTTTTA-TTTTTATAA-TTTTTATATA
1 TGTATATTTTTTACTTTTTA-AATTTTTTATATA
3685270 TGGTATATTTT
1 T-GTATATTTT
3685281 ATAATTATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
32 11 0.30
33 13 0.35
34 8 0.22
35 5 0.14
ACGTcount: A:0.26, C:0.01, G:0.05, T:0.68
Consensus pattern (33 bp):
TGTATATTTTTTACTTTTTAAATTTTTTATATA
Found at i:3686915 original size:29 final size:30
Alignment explanation
Indices: 3686846--3686915 Score: 90
Period size: 29 Copynumber: 2.3 Consensus size: 30
3686836 ACTATTAAAA
*
3686846 TAGTCACTTTTGTTTGAATCAGATTACATTT
1 TAGTCACTTATGTTTGAAT-AGATTACATTT
*
3686877 TAGTCACTTATGTTTGAA-ATG-TTATATTT
1 TAGTCACTTATGTTTGAATA-GATTACATTT
3686906 TAGTCACTTA
1 TAGTCACTTA
3686916 CGTTATCGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 18 0.50
30 1 0.03
31 17 0.47
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (30 bp):
TAGTCACTTATGTTTGAATAGATTACATTT
Found at i:3687106 original size:10 final size:9
Alignment explanation
Indices: 3687097--3687129 Score: 50
Period size: 8 Copynumber: 3.7 Consensus size: 9
3687087 TGTTCTTTTA
3687097 ATTTTCTTT
1 ATTTTCTTT
3687106 A-TTTCTTT
1 ATTTTCTTT
3687114 ATTTTTCTTT
1 A-TTTTCTTT
3687124 ATTTTC
1 ATTTTC
3687130 CATTCACTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 8 0.36
9 6 0.27
10 8 0.36
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (9 bp):
ATTTTCTTT
Found at i:3687114 original size:18 final size:18
Alignment explanation
Indices: 3687093--3687127 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
3687083 TTTTTGTTCT
3687093 TTTAATTTTCTTTATTTC
1 TTTAATTTTCTTTATTTC
*
3687111 TTTATTTTTCTTTATTT
1 TTTAATTTTCTTTATTT
3687128 TCCATTCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTAATTTTCTTTATTTC
Found at i:3687413 original size:17 final size:16
Alignment explanation
Indices: 3687371--3687417 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
3687361 AATGGAAAAT
3687371 AAAGAAAAAGAAAAGA
1 AAAGAAAAAGAAAAGA
* * *
3687387 AAAGTTAAAAGAACATA
1 AAAG-AAAAAGAAAAGA
3687404 AAAGAAAAA-AAAAG
1 AAAGAAAAAGAAAAG
3687418 TTAAATTGCT
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
15 3 0.12
16 8 0.33
17 13 0.54
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAGAAAAGA
Found at i:3702625 original size:15 final size:15
Alignment explanation
Indices: 3702581--3702627 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
3702571 CACTACTTAA
3702581 TATTTATAAAAGAAT
1 TATTTATAAAAGAAT
* *
3702596 T-TCTACCAAAA-AAT
1 TATTTA-TAAAAGAAT
3702610 TATTTATAAAAGAAT
1 TATTTATAAAAGAAT
3702625 TAT
1 TAT
3702628 AATTACTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.38
Consensus pattern (15 bp):
TATTTATAAAAGAAT
Found at i:3704101 original size:14 final size:14
Alignment explanation
Indices: 3704082--3704123 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
3704072 TGATTATCTA
3704082 ATTTAATTTTAATT
1 ATTTAATTTTAATT
3704096 ATTTAATTTT-ATT
1 ATTTAATTTTAATT
3704109 -TTTACATTTATAATT
1 ATTTA-ATTT-TAATT
3704124 CAACTATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.16
13 7 0.28
14 11 0.44
15 3 0.12
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (14 bp):
ATTTAATTTTAATT
Found at i:3704102 original size:19 final size:19
Alignment explanation
Indices: 3704074--3704110 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
3704064 CGCATATTTG
3704074 ATTATCTAATTTAATTTTA
1 ATTATCTAATTTAATTTTA
* *
3704093 ATTATTTAATTTTATTTT
1 ATTATCTAATTTAATTTT
3704111 TACATTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTATCTAATTTAATTTTA
Found at i:3706555 original size:12 final size:11
Alignment explanation
Indices: 3706527--3706556 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
3706517 TATATTTTTT
3706527 TATTTTTAAAA
1 TATTTTTAAAA
3706538 TATTTTTAAAA
1 TATTTTTAAAA
3706549 TACTTTTT
1 TA-TTTTT
3706557 TTATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:3711546 original size:42 final size:42
Alignment explanation
Indices: 3711499--3711584 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
3711489 ATATCAACTT
3711499 CAAATCCTATATCATAGGAGCAGAATCCAATCAATTTAAGCA
1 CAAATCCTATATCATAGGAGCAGAATCCAATCAATTTAAGCA
3711541 CAAATCCTATATCATAGGAGCAGAATCCAATCAATTTAAGCA
1 CAAATCCTATATCATAGGAGCAGAATCCAATCAATTTAAGCA
3711583 CA
1 CA
3711585 GAAATCTATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.43, C:0.22, G:0.12, T:0.23
Consensus pattern (42 bp):
CAAATCCTATATCATAGGAGCAGAATCCAATCAATTTAAGCA
Found at i:3711587 original size:22 final size:22
Alignment explanation
Indices: 3711519--3711587 Score: 67
Period size: 21 Copynumber: 3.2 Consensus size: 22
3711509 ATCATAGGAG
3711519 CAGAATCCAATCAATTTAAGCA
1 CAGAATCCAATCAATTTAAGCA
*
3711541 CA-AATCCTATATC-A--T-AGGA
1 CAGAATCC-A-ATCAATTTAAGCA
3711560 GCAGAATCCAATCAATTTAAGCA
1 -CAGAATCCAATCAATTTAAGCA
3711583 CAGAA
1 CAGAA
3711588 ATCTATTAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
19 6 0.16
20 5 0.14
21 10 0.27
22 10 0.27
23 6 0.16
ACGTcount: A:0.45, C:0.22, G:0.12, T:0.22
Consensus pattern (22 bp):
CAGAATCCAATCAATTTAAGCA
Found at i:3712754 original size:42 final size:42
Alignment explanation
Indices: 3712695--3712779 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
3712685 TAGCCCCTCC
3712695 ATACCCAATAAATAGGAGAATAATACATTTCAGCACACTCGA
1 ATACCCAATAAATAGGAGAATAATACATTTCAGCACACTCGA
3712737 ATACCCAATAAATAGGAGAATAATACATTTCAGCACACTCGA
1 ATACCCAATAAATAGGAGAATAATACATTTCAGCACACTCGA
3712779 A
1 A
3712780 CCCATATTCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.46, C:0.21, G:0.12, T:0.21
Consensus pattern (42 bp):
ATACCCAATAAATAGGAGAATAATACATTTCAGCACACTCGA
Found at i:3727504 original size:29 final size:30
Alignment explanation
Indices: 3727464--3727529 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 30
3727454 ACATATTGTA
*
3727464 TTTAGGGATTGCTCACATATGGGTCAAA-T
1 TTTAGGGATTGCTCACATAAGGGTCAAATT
* *
3727493 TTTAGGGATTGCTCCCATAAGGGTTAAATT
1 TTTAGGGATTGCTCACATAAGGGTCAAATT
3727523 TTTAGGG
1 TTTAGGG
3727530 CCCAACCTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 25 0.76
30 8 0.24
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (30 bp):
TTTAGGGATTGCTCACATAAGGGTCAAATT
Found at i:3740339 original size:21 final size:22
Alignment explanation
Indices: 3740299--3740345 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
3740289 CTCTGCTCAA
*
3740299 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
*
3740320 ACTCCACCTGCTGTGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
3740342 ACTC
1 ACTC
3740346 ACTCCTTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.23
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:3743865 original size:18 final size:18
Alignment explanation
Indices: 3743842--3743877 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
3743832 AGTAAGTAAT
* *
3743842 GTGTTTTTGATGTATTTA
1 GTGTTTTTCATGCATTTA
3743860 GTGTTTTTCATGCATTTA
1 GTGTTTTTCATGCATTTA
3743878 ATTTCAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.06, G:0.19, T:0.58
Consensus pattern (18 bp):
GTGTTTTTCATGCATTTA
Found at i:3745835 original size:4 final size:4
Alignment explanation
Indices: 3745812--3745896 Score: 62
Period size: 4 Copynumber: 20.5 Consensus size: 4
3745802 GAGTTAAGAA
* * * * *
3745812 AATT ATTT AATT AATA AATT AATTT AGTT AATT ATTT AATC AATT AATTT
1 AATT AATT AATT AATT AATT AA-TT AATT AATT AATT AATT AATT AA-TT
* * * *
3745862 AGTT AATT ATTT AATC AATT AATTT AATT GATT AA
1 AATT AATT AATT AATT AATT AA-TT AATT AATT AA
3745897 ATAAACAATA
Statistics
Matches: 60, Mismatches: 18, Indels: 6
0.71 0.21 0.07
Matches are distributed among these distances:
4 50 0.83
5 10 0.17
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (4 bp):
AATT
Found at i:3745896 original size:21 final size:21
Alignment explanation
Indices: 3745812--3745890 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 21
3745802 GAGTTAAGAA
* * *
3745812 AATT-ATTTAATTAATAAATT
1 AATTAATTTAATTATTTAATC
* *
3745832 AATTTAGTTAATTATTTAATC
1 AATTAATTTAATTATTTAATC
3745853 AATTAATTTAGTTAATTATTTAATC
1 AATTAA--T--TTAATTATTTAATC
3745878 AATTAATTTAATT
1 AATTAATTTAATT
3745891 GATTAAATAA
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
20 4 0.08
21 23 0.48
23 1 0.02
25 20 0.42
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.52
Consensus pattern (21 bp):
AATTAATTTAATTATTTAATC
Found at i:3745905 original size:25 final size:25
Alignment explanation
Indices: 3745822--3745887 Score: 123
Period size: 25 Copynumber: 2.6 Consensus size: 25
3745812 AATTATTTAA
*
3745822 TTAATAAATTAATTTAGTTAATTAT
1 TTAATCAATTAATTTAGTTAATTAT
3745847 TTAATCAATTAATTTAGTTAATTAT
1 TTAATCAATTAATTTAGTTAATTAT
3745872 TTAATCAATTAATTTA
1 TTAATCAATTAATTTA
3745888 ATTGATTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (25 bp):
TTAATCAATTAATTTAGTTAATTAT
Found at i:3750623 original size:18 final size:17
Alignment explanation
Indices: 3750596--3750630 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
3750586 AAATATGTGC
3750596 GAAGATTAAAGAACAAA
1 GAAGATTAAAGAACAAA
*
3750613 GAAGAATTAAAGCACAAA
1 GAAG-ATTAAAGAACAAA
3750631 TTAAGTCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.63, C:0.09, G:0.17, T:0.11
Consensus pattern (17 bp):
GAAGATTAAAGAACAAA
Found at i:3751144 original size:21 final size:22
Alignment explanation
Indices: 3751120--3751160 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
3751110 AAATATAAGT
*
3751120 ATAAATAATATAATT-AAGAAC
1 ATAAATAACATAATTCAAGAAC
3751141 ATAAATAACATAATTCAAGA
1 ATAAATAACATAATTCAAGA
3751161 GGAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.27
Consensus pattern (22 bp):
ATAAATAACATAATTCAAGAAC
Found at i:3751405 original size:23 final size:25
Alignment explanation
Indices: 3751375--3751422 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
3751365 ACTTTAGTGC
3751375 TTAAAGTG-AA-CAACACTTCGATG
1 TTAAAGTGTAATCAACACTTCGATG
*
3751398 TTAAAGTGTAATCTACACTTCGATG
1 TTAAAGTGTAATCAACACTTCGATG
3751423 CTTTAGTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.36
24 2 0.09
25 12 0.55
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (25 bp):
TTAAAGTGTAATCAACACTTCGATG
Found at i:3751494 original size:16 final size:16
Alignment explanation
Indices: 3751473--3751545 Score: 74
Period size: 16 Copynumber: 4.6 Consensus size: 16
3751463 TACTAAGGGC
**
3751473 TAAGTGAAGCAAGTGG
1 TAAGTGAAATAAGTGG
**
3751489 TAAGTGAAATAAGTTC
1 TAAGTGAAATAAGTGG
* *
3751505 TAAGTTAAATAAATGG
1 TAAGTGAAATAAGTGG
**
3751521 TAAGTGATGTAAGTGG
1 TAAGTGAAATAAGTGG
3751537 TAAGTGAAA
1 TAAGTGAAA
3751546 ATTTTATGTT
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.42, C:0.03, G:0.27, T:0.27
Consensus pattern (16 bp):
TAAGTGAAATAAGTGG
Found at i:3752937 original size:25 final size:26
Alignment explanation
Indices: 3752898--3752948 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
3752888 GATAAATATC
3752898 AGTTAGTACAAATTTAAATAAAGAAT
1 AGTTAGTACAAATTTAAATAAAGAAT
3752924 AGTT-GTACAAATTTAAATAAAGAAT
1 AGTTAGTACAAATTTAAATAAAGAAT
3752949 CATGTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.53, C:0.04, G:0.12, T:0.31
Consensus pattern (26 bp):
AGTTAGTACAAATTTAAATAAAGAAT
Found at i:3759084 original size:28 final size:29
Alignment explanation
Indices: 3759053--3759107 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
3759043 ATTGGGGCAA
3759053 TCAT-AAATAAATATAGGAATATAAAAAT
1 TCATCAAATAAATATAGGAATATAAAAAT
* * * *
3759081 TCATCCAATTAATATGGGAATCTAAAA
1 TCATCAAATAAATATAGGAATATAAAA
3759108 CCATAGAACC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 4 0.18
29 18 0.82
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.29
Consensus pattern (29 bp):
TCATCAAATAAATATAGGAATATAAAAAT
Found at i:3763174 original size:51 final size:51
Alignment explanation
Indices: 3763116--3763402 Score: 267
Period size: 51 Copynumber: 5.6 Consensus size: 51
3763106 CTAGTTCACA
* * **
3763116 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCAATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTCTCATCCGGTACACG
* ** * *
3763167 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCT-ATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATTCTCATCCGGTACACG
* * * * *
3763218 TAGTAGCCTACACATAGTATTATACACGTGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTCTCATCCGGTACACG
* * * ** * * *
3763269 TACTAGCCTACACATAGTACTACACACGTGATCGAAGCT-ATTCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATTCTCATCCGGTACACG
* * * *
3763320 TAGTAGCCTGCACATTGTACTACACATGCGA-C-TTATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTCTCA-TCCGGTACACG
* *
3763370 TAATAGCCTGCACATAGTACTACACATGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
3763403 TAGCAACTTC
Statistics
Matches: 185, Mismatches: 45, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 39 0.21
51 138 0.75
52 6 0.03
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATTCTCATCCGGTACACG
Found at i:3763249 original size:102 final size:102
Alignment explanation
Indices: 3763114--3763400 Score: 425
Period size: 102 Copynumber: 2.8 Consensus size: 102
3763104 ACCTAGTTCA
* *
3763114 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCAATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGTAATAGCCTGCA
3763179 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
* * * * * *
3763216 CATAGTAGCCTACACATAGTATTATACACGTGACCATTTTCATCCGATACACGTACTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGTAATAGCCTGCA
*
3763281 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
* * * *
3763318 CATAGTAGCCTGCACATTGTACTACACATGCGA-C-TTATCATTCCGGTACACGTAATAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATACACGTAATAGCCTGC
*
3763381 ACATAGTACTACACATGTGA
65 ACATAGTACTACACACGTGA
3763401 CCTAGCAACT
Statistics
Matches: 165, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
100 5 0.03
101 39 0.24
102 121 0.73
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGTAATAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:3776457 original size:31 final size:31
Alignment explanation
Indices: 3776386--3776445 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
3776376 CAAATAACTT
*** *
3776386 AAATAATTTAGTGATTTAAATTAAAATTTTC
1 AAATAATTTAGTGACCAAAATGAAAATTTTC
3776417 AAATAATTTAGTGACCAAAATGAAAATTT
1 AAATAATTTAGTGACCAAAATGAAAATTT
3776446 GTCCATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.48, C:0.05, G:0.08, T:0.38
Consensus pattern (31 bp):
AAATAATTTAGTGACCAAAATGAAAATTTTC
Found at i:3786215 original size:27 final size:27
Alignment explanation
Indices: 3786185--3786247 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
3786175 AATTTTTTAT
**
3786185 AAAGGC-ATCCCTTTTAGAGTTTGCCAC
1 AAAGGCTAT-CCTTTTAGAGTTCACCAC
*
3786212 AAAGGCTATTCTTTTAGAGTTCACCAC
1 AAAGGCTATCCTTTTAGAGTTCACCAC
3786239 AAAGGCTAT
1 AAAGGCTAT
3786248 GATTAGTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 30 0.94
28 2 0.06
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (27 bp):
AAAGGCTATCCTTTTAGAGTTCACCAC
Found at i:3792113 original size:29 final size:29
Alignment explanation
Indices: 3792081--3792177 Score: 77
Period size: 29 Copynumber: 3.1 Consensus size: 29
3792071 AAAAATATTT
3792081 AAATGTATATATAATTTATCAAGAAACTA
1 AAATGTATATATAATTTATCAAGAAACTA
* * * * * * *
3792110 AAATTAGGCTATAAATATATGTGTGAAAAATATTT
1 AAA-T--G-TATATATA-ATTTATCAAGAA-ACTA
3792145 AAATGTATATATAATTTATCAAGAAACTA
1 AAATGTATATATAATTTATCAAGAAACTA
3792174 AAAT
1 AAAT
3792178 TAGGCTATAA
Statistics
Matches: 48, Mismatches: 14, Indels: 12
0.65 0.19 0.16
Matches are distributed among these distances:
29 9 0.19
30 9 0.19
31 7 0.15
32 2 0.04
33 7 0.15
34 9 0.19
35 5 0.10
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (29 bp):
AAATGTATATATAATTTATCAAGAAACTA
Found at i:3792128 original size:35 final size:35
Alignment explanation
Indices: 3792089--3792192 Score: 96
Period size: 35 Copynumber: 3.1 Consensus size: 35
3792079 TTAAATGTAT
3792089 ATATAATTTATCAAGAAACTAAAATTAGGCTATAA
1 ATATAATTTATCAAGAAACTAAAATTAGGCTATAA
* * * * * *
3792124 ATAT-ATGTGTGAAAAATATTTAAA-T--G-TAT--
1 ATATAATTTATCAAGAA-ACTAAAATTAGGCTATAA
3792153 ATATAATTTATCAAGAAACTAAAATTAGGCTATAA
1 ATATAATTTATCAAGAAACTAAAATTAGGCTATAA
3792188 ATATA
1 ATATA
3792193 TGTGTAAAAA
Statistics
Matches: 49, Mismatches: 12, Indels: 16
0.64 0.16 0.21
Matches are distributed among these distances:
29 9 0.18
30 9 0.18
31 3 0.06
32 2 0.04
33 3 0.06
34 9 0.18
35 14 0.29
ACGTcount: A:0.50, C:0.06, G:0.10, T:0.35
Consensus pattern (35 bp):
ATATAATTTATCAAGAAACTAAAATTAGGCTATAA
Found at i:3792130 original size:64 final size:64
Alignment explanation
Indices: 3792022--3792211 Score: 310
Period size: 64 Copynumber: 3.0 Consensus size: 64
3792012 TACCAAACTA
* * * * *
3792022 ATATATAGTTTGTTAAGAAATTAAAAATTAGACTATAAATATATGTGTGAAAAATATTTAAATGT
1 ATATATAATTTATCAAGAAACT-AAAATTAGGCTATAAATATATGTGTGAAAAATATTTAAATGT
3792087 ATATATAATTTATCAAGAAACTAAAATTAGGCTATAAATATATGTGTGAAAAATATTTAAATGT
1 ATATATAATTTATCAAGAAACTAAAATTAGGCTATAAATATATGTGTGAAAAATATTTAAATGT
3792151 ATATATAATTTATCAAGAAACTAAAATTAGGCTATAAATATATGTGT-AAAAATTATTTAAA
1 ATATATAATTTATCAAGAAACTAAAATTAGGCTATAAATATATGTGTGAAAAA-TATTTAAA
3792212 AATATCGAAA
Statistics
Matches: 119, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
63 5 0.04
64 96 0.81
65 18 0.15
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.37
Consensus pattern (64 bp):
ATATATAATTTATCAAGAAACTAAAATTAGGCTATAAATATATGTGTGAAAAATATTTAAATGT
Found at i:3792475 original size:18 final size:16
Alignment explanation
Indices: 3792449--3792487 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
3792439 ATTTTAAGAA
*
3792449 ATATTTTTTTATAATTTT
1 ATATATTTTTAT--TTTT
3792467 ATATATTTTTATTTTT
1 ATATATTTTTATTTTT
3792483 ATATA
1 ATATA
3792488 ATTGTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 9 0.45
18 11 0.55
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
ATATATTTTTATTTTT
Found at i:3792479 original size:26 final size:27
Alignment explanation
Indices: 3792450--3792500 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
3792440 TTTTAAGAAA
*
3792450 TATTTTTTTATAATT-TTATATATTTT
1 TATTTTTATATAATTGTTATATATTTT
3792476 TATTTTTATATAATTGTTATATATT
1 TATTTTTATATAATTGTTATATATT
3792501 ACAAATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (27 bp):
TATTTTTATATAATTGTTATATATTTT
Found at i:3798246 original size:63 final size:63
Alignment explanation
Indices: 3798147--3798301 Score: 301
Period size: 63 Copynumber: 2.5 Consensus size: 63
3798137 AGGTAGTAGT
3798147 AAGCAGATAAGGAGGAATCTGCTTTTACAAACGTAAAGGACATGACTCATACATAAAGGACAC
1 AAGCAGATAAGGAGGAATCTGCTTTTACAAACGTAAAGGACATGACTCATACATAAAGGACAC
*
3798210 AAGCAGATAAGGAGGAATCTACTTTTACAAACGTAAAGGACATGACTCATACATAAAGGACAC
1 AAGCAGATAAGGAGGAATCTGCTTTTACAAACGTAAAGGACATGACTCATACATAAAGGACAC
3798273 AAGCAGATAAGGAGGAATCTGCTTTTACA
1 AAGCAGATAAGGAGGAATCTGCTTTTACA
3798302 TTAATTTATC
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 90 1.00
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.20
Consensus pattern (63 bp):
AAGCAGATAAGGAGGAATCTGCTTTTACAAACGTAAAGGACATGACTCATACATAAAGGACAC
Found at i:3814818 original size:18 final size:18
Alignment explanation
Indices: 3814795--3814833 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
3814785 CATCATTGTT
3814795 GATTGGGATGATCTAACC
1 GATTGGGATGATCTAACC
3814813 GATTGGGATGATCTAACC
1 GATTGGGATGATCTAACC
3814831 GAT
1 GAT
3814834 CATGTCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (18 bp):
GATTGGGATGATCTAACC
Found at i:3816358 original size:31 final size:30
Alignment explanation
Indices: 3816323--3816387 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
3816313 TTAGTAATAT
* * *
3816323 TCTTCTCATATGAATTTGATTGAGAACTTAA
1 TCTTCCCACATGAATTTAATTGAGAACTT-A
*
3816354 TCTTCCCACATTAATTTAATTGAGAACTTA
1 TCTTCCCACATGAATTTAATTGAGAACTTA
3816384 TCTT
1 TCTT
3816388 AATAACTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 5 0.17
31 25 0.83
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.43
Consensus pattern (30 bp):
TCTTCCCACATGAATTTAATTGAGAACTTA
Found at i:3818916 original size:156 final size:156
Alignment explanation
Indices: 3818632--3818948 Score: 589
Period size: 156 Copynumber: 2.0 Consensus size: 156
3818622 ATCGGGCAAC
* *
3818632 ACTCCTATGATTCCTACTCTACATCTCACAAAAGAAGATGGTGGTTTATTTGAGAACCCTAAGAG
1 ACTCCTATGATTCCTAATCTACATCTCACAAAAGAAGATGGTGGTTTATTTGACAACCCTAAGAG
3818697 GTATAGAAGATTGGTAGAAAAGTTGAACTATCTCACACTAACCTGTCTAGATATCGCACATGCAA
66 GTATAGAAGATTGGTAGAAAAGTTGAACTATCTCACACTAACCTGTCTAGATATCGCACATGCAA
3818762 CCGGTGTTGTTAGCCAATTTATGACA
131 CCGGTGTTGTTAGCCAATTTATGACA
3818788 ACTCCTATGATTCCTAATCTACATCTCACAAAAGAAGATGGTGGTTTATTTGACAACCCTAAGAG
1 ACTCCTATGATTCCTAATCTACATCTCACAAAAGAAGATGGTGGTTTATTTGACAACCCTAAGAG
* *
3818853 GTATAGAAGATTGGTAGAAAAGTTGAACTATCTCACACTAACTTGTCTAGATATCGCATATGCAA
66 GTATAGAAGATTGGTAGAAAAGTTGAACTATCTCACACTAACCTGTCTAGATATCGCACATGCAA
3818918 CCGGTGTTGTTAGCCAATTTATGACA
131 CCGGTGTTGTTAGCCAATTTATGACA
*
3818944 GCTCC
1 ACTCC
3818949 AACCATTCAT
Statistics
Matches: 156, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 156 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29
Consensus pattern (156 bp):
ACTCCTATGATTCCTAATCTACATCTCACAAAAGAAGATGGTGGTTTATTTGACAACCCTAAGAG
GTATAGAAGATTGGTAGAAAAGTTGAACTATCTCACACTAACCTGTCTAGATATCGCACATGCAA
CCGGTGTTGTTAGCCAATTTATGACA
Found at i:3831037 original size:16 final size:16
Alignment explanation
Indices: 3831016--3831047 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
3831006 CGTGACACTA
3831016 GACGTTTGACTTTTTT
1 GACGTTTGACTTTTTT
3831032 GACGTTTGACTTTTTT
1 GACGTTTGACTTTTTT
3831048 CTGTACCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.56
Consensus pattern (16 bp):
GACGTTTGACTTTTTT
Found at i:3832792 original size:19 final size:20
Alignment explanation
Indices: 3832752--3832809 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 20
3832742 TTATAAATAA
* *
3832752 TAAATTTT-AGAAAATTTAT
1 TAAATTTTAATAAAAATTAT
3832771 TAAATTTTAATAAAAATT-T
1 TAAATTTTAATAAAAATTAT
* *
3832790 TAAAATTTATTAAAAATTAT
1 TAAATTTTAATAAAAATTAT
3832810 AACTTTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 25 0.76
20 8 0.24
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TAAATTTTAATAAAAATTAT
Found at i:3832802 original size:10 final size:10
Alignment explanation
Indices: 3832762--3832809 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
3832752 TAAATTTTAG
3832762 AAAATTTATT
1 AAAATTTATT
* *
3832772 AAATTTTAAT
1 AAAATTTATT
*
3832782 AAAAATT-TT
1 AAAATTTATT
3832791 AAAATTTATT
1 AAAATTTATT
*
3832801 AAAAATTAT
1 AAAATTTAT
3832810 AACTTTTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
9 7 0.23
10 23 0.77
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AAAATTTATT
Found at i:3833094 original size:10 final size:9
Alignment explanation
Indices: 3833025--3833153 Score: 50
Period size: 10 Copynumber: 13.4 Consensus size: 9
3833015 ATTTACGAAA
3833025 TTTATATTT
1 TTTATATTT
*
3833034 ATTTACATTT
1 -TTTATATTT
*
3833044 TGTATATTTT
1 TTTATA-TTT
*
3833054 TTTACGACTTT
1 TTTA-TA-TTT
3833065 ATTTATATTT
1 -TTTATATTT
*
3833075 TATA-ATTT
1 TTTATATTT
3833083 TTT-TATGATT
1 TTTATAT--TT
**
3833093 TTTATAAAAT
1 TTTAT-ATTT
*
3833103 TTTACAATTT
1 TTTA-TATTT
3833113 TTTATATATT
1 TTTATAT-TT
*
3833123 TTT-TACGATT
1 TTTATA--TTT
3833133 TTTATA-TT
1 TTTATATTT
3833141 TTTATATTT
1 TTTATATTT
3833150 TTTA
1 TTTA
3833154 ATAAATTTTT
Statistics
Matches: 89, Mismatches: 16, Indels: 29
0.66 0.12 0.22
Matches are distributed among these distances:
8 16 0.18
9 17 0.19
10 43 0.48
11 8 0.09
12 5 0.06
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.66
Consensus pattern (9 bp):
TTTATATTT
Found at i:3833097 original size:20 final size:20
Alignment explanation
Indices: 3833072--3833143 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 20
3833062 TTTATTTATA
*
3833072 TTTTATAATTTTTTTATGAT
1 TTTTATAATTTTTTTACGAT
** *
3833092 TTTTATAA-AATTTTACAAT
1 TTTTATAATTTTTTTACGAT
3833111 TTTT-TATATATTTTTTACGAT
1 TTTTATA-AT-TTTTTTACGAT
3833132 TTTTAT-ATTTTT
1 TTTTATAATTTTT
3833144 ATATTTTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
18 2 0.05
19 16 0.39
20 10 0.24
21 12 0.29
22 1 0.02
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TTTTATAATTTTTTTACGAT
Found at i:3833097 original size:31 final size:31
Alignment explanation
Indices: 3833031--3833125 Score: 88
Period size: 30 Copynumber: 3.1 Consensus size: 31
3833021 GAAATTTATA
* * * *
3833031 TTTATTTACATTTTGTATATTTTTTTACGA-C
1 TTTATTTAAATTTTATA-ATTTTTTTATGATT
*
3833062 TTTATTTATATTTTATAATTTTTTTATGATT
1 TTTATTTAAATTTTATAATTTTTTTATGATT
* *
3833093 TTTA-TAAAATTTTACAATTTTTTATAT-ATT
1 TTTATTTAAATTTTATAATTTTTT-TATGATT
3833123 TTT
1 TTT
3833126 TACGATTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
30 33 0.60
31 22 0.40
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.65
Consensus pattern (31 bp):
TTTATTTAAATTTTATAATTTTTTTATGATT
Found at i:3833123 original size:11 final size:10
Alignment explanation
Indices: 3833072--3833164 Score: 61
Period size: 11 Copynumber: 9.5 Consensus size: 10
3833062 TTTATTTATA
3833072 TTTTATAATTT
1 TTTTATAA-TT
*
3833083 TTTTATGA-T
1 TTTTATAATT
**
3833092 TTTTATAAAA
1 TTTTATAATT
*
3833102 TTTTACAATT
1 TTTTATAATT
3833112 TTTTATATATT
1 TTTTATA-ATT
**
3833123 TTTTACGA-T
1 TTTTATAATT
3833132 TTTTAT-A-T
1 TTTTATAATT
3833140 TTTTAT-ATT
1 TTTTATAATT
*
3833149 TTTTAATAAAT
1 TTTT-ATAATT
3833160 TTTTA
1 TTTTA
3833165 ATATTTGGAT
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
8 9 0.14
9 19 0.29
10 17 0.26
11 21 0.32
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTTATAATT
Found at i:3833176 original size:27 final size:29
Alignment explanation
Indices: 3833146--3833199 Score: 76
Period size: 27 Copynumber: 1.9 Consensus size: 29
3833136 ATATTTTTAT
*
3833146 ATTTTTTAAT-AAATTT-TTAATATTTGG
1 ATTTTTTAATAAAATTTAATAATATTTGG
*
3833173 ATTTTTTATTAAAATTTAATAATATTT
1 ATTTTTTAATAAAATTTAATAATATTT
3833200 ATATCTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.39
28 6 0.26
29 8 0.35
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (29 bp):
ATTTTTTAATAAAATTTAATAATATTTGG
Found at i:3833208 original size:29 final size:27
Alignment explanation
Indices: 3833133--3833211 Score: 79
Period size: 29 Copynumber: 2.9 Consensus size: 27
3833123 TTTTACGATT
* *
3833133 TTTAT-ATTTTTATATTTTTTAATAAA
1 TTTATAATATTTATATTTTTTATTAAA
* **
3833159 TTTTTAATATTTGGATTTTTTATTAAAA
1 TTTATAATATTTATATTTTTTATT-AAA
*
3833187 TTTAATAATATTTATATCTTTTATT
1 TTT-ATAATATTTATATTTTTTATT
3833212 GATTTTAATT
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
26 4 0.10
27 14 0.34
28 6 0.15
29 17 0.41
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (27 bp):
TTTATAATATTTATATTTTTTATTAAA
Found at i:3833396 original size:89 final size:89
Alignment explanation
Indices: 3833251--3833446 Score: 268
Period size: 89 Copynumber: 2.2 Consensus size: 89
3833241 AATTTTTAAT
* * * *
3833251 AAAAGCAGGGGCTTAATTGTTTTTTTGAAAAAGTTTGAGGGTTTTTTTGATGCATTTTGAAAGTT
1 AAAAGTAGGGGCTTAATTGTTTTCTTGAAAAAGTTTGAGGGCTTTTTTAATGCATTTTGAAAGTT
* * **
3833316 CAAGGACCCAATTGAGTGC-AAAA
66 CAAAGACCAAAAGGAGTGCAAAAA
* * *
3833339 AAAATTAGGGGCTTAATTGCTTTTCTTGAAAAGGTTTGAGGGCTTTTTTAATTCATTTTGAAAGT
1 AAAAGTAGGGGCTTAATTG-TTTTCTTGAAAAAGTTTGAGGGCTTTTTTAATGCATTTTGAAAGT
*
3833404 TCAAATACCAAAAGGAGTGCAAAAA
65 TCAAAGACCAAAAGGAGTGCAAAAA
3833429 AAAAGTAGGGGCTTAATT
1 AAAAGTAGGGGCTTAATT
3833447 TTATTTTTTA
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
88 17 0.18
89 55 0.59
90 21 0.23
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.34
Consensus pattern (89 bp):
AAAAGTAGGGGCTTAATTGTTTTCTTGAAAAAGTTTGAGGGCTTTTTTAATGCATTTTGAAAGTT
CAAAGACCAAAAGGAGTGCAAAAA
Found at i:3837454 original size:83 final size:83
Alignment explanation
Indices: 3837315--3837479 Score: 321
Period size: 83 Copynumber: 2.0 Consensus size: 83
3837305 AAAAACTGTT
*
3837315 TATTTCTTATAAGTTCTCCTGTACTGTTACTTTTTTATAATTTATTTAGCTTACTGCCATACAAG
1 TATTTCTTATAAGTTCTCCTGTACTGTAACTTTTTTATAATTTATTTAGCTTACTGCCATACAAG
3837380 ATTACAAGTTCAGGAATG
66 ATTACAAGTTCAGGAATG
3837398 TATTTCTTATAAGTTCTCCTGTACTGTAACTTTTTTATAATTTATTTAGCTTACTGCCATACAAG
1 TATTTCTTATAAGTTCTCCTGTACTGTAACTTTTTTATAATTTATTTAGCTTACTGCCATACAAG
3837463 ATTACAAGTTCAGGAAT
66 ATTACAAGTTCAGGAAT
3837480 TTAGTAGCTT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 81 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (83 bp):
TATTTCTTATAAGTTCTCCTGTACTGTAACTTTTTTATAATTTATTTAGCTTACTGCCATACAAG
ATTACAAGTTCAGGAATG
Found at i:3843754 original size:43 final size:43
Alignment explanation
Indices: 3843689--3843775 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
3843679 ACTTTAATAT
*
3843689 TTTAGATTGGATTTTGAGATTGTGTATAATTTAGTATTTGAGC
1 TTTAGATTGGATTTTGAGATTGTGTATAATTTAGTATCTGAGC
*
3843732 TTTAGATTGGATTTTGATATTGTGTATAATTTAGTATCTGAGC
1 TTTAGATTGGATTTTGAGATTGTGTATAATTTAGTATCTGAGC
3843775 T
1 T
3843776 CAGATAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.25, C:0.03, G:0.22, T:0.49
Consensus pattern (43 bp):
TTTAGATTGGATTTTGAGATTGTGTATAATTTAGTATCTGAGC
Found at i:3844672 original size:27 final size:29
Alignment explanation
Indices: 3844633--3844687 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
3844623 GGACTTTATA
* *
3844633 TTTTTTTCTTAATTTAATG-TTTAATTTC
1 TTTTTATCTTAATTTAATGCTTGAATTTC
3844661 TTTTTATC-TAATTTAATGCTTGAATTT
1 TTTTTATCTTAATTTAATGCTTGAATTT
3844688 GACTCTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.64
Consensus pattern (29 bp):
TTTTTATCTTAATTTAATGCTTGAATTTC
Found at i:3845470 original size:14 final size:15
Alignment explanation
Indices: 3845437--3845472 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
3845427 AAATAATATG
3845437 TAAAAATTTTATTCA
1 TAAAAATTTTATTCA
3845452 TAAAAATTTTATT--
1 TAAAAATTTTATTCA
3845465 TAAAAATT
1 TAAAAATT
3845473 AAATGAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 8 0.38
15 13 0.62
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
TAAAAATTTTATTCA
Found at i:3845961 original size:20 final size:20
Alignment explanation
Indices: 3845936--3846010 Score: 79
Period size: 20 Copynumber: 3.9 Consensus size: 20
3845926 AATATTTTTC
3845936 TCATAAAAA-TATTAAAAAAG
1 TCATAAAAATTA-TAAAAAAG
*
3845956 TCATAAAAATTATAAAAAAA
1 TCATAAAAATTATAAAAAAG
3845976 TCA-AACAAATTATAAAAAA-
1 TCATAA-AAATTATAAAAAAG
3845995 T-AT-AAAATTAATAAAA
1 TCATAAAAATT-ATAAAA
3846011 CTTATTTAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
17 5 0.10
18 8 0.16
19 3 0.06
20 32 0.64
21 2 0.04
ACGTcount: A:0.68, C:0.05, G:0.01, T:0.25
Consensus pattern (20 bp):
TCATAAAAATTATAAAAAAG
Found at i:3845971 original size:29 final size:28
Alignment explanation
Indices: 3845938--3846010 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
3845928 TATTTTTCTC
*
3845938 ATAAAAATATTAAAAAAGTCATAAAAATT
1 ATAAAAATATTAAAAAA-TCATAAAAAAT
* * *
3845967 ATAAAAAAATCAAACAAATTATAAAAAAT
1 ATAAAAATATTAAA-AAATCATAAAAAAT
* *
3845996 ATAAAATTAATAAAA
1 ATAAAAATATTAAAA
3846011 CTTATTTAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 1 0.03
29 31 0.89
30 3 0.09
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.25
Consensus pattern (28 bp):
ATAAAAATATTAAAAAATCATAAAAAAT
Found at i:3845974 original size:10 final size:10
Alignment explanation
Indices: 3845938--3846092 Score: 64
Period size: 10 Copynumber: 15.9 Consensus size: 10
3845928 TATTTTTCTC
3845938 ATAAAAATATT
1 ATAAAAA-ATT
* *
3845949 A-AAAAAGTC
1 ATAAAAAATT
3845958 AT-AAAAATT
1 ATAAAAAATT
3845967 ATAAAAAA--
1 ATAAAAAATT
3845975 ATCAAACAAATT
1 AT-AAA-AAATT
3845987 ATAAAAAA-T
1 ATAAAAAATT
3845996 AT--AAAATT
1 ATAAAAAATT
*
3846004 A-ATAAAACTT
1 ATA-AAAAATT
**
3846014 ATTTAAAATT
1 ATAAAAAATT
3846024 A-AAAAACA-T
1 ATAAAAA-ATT
* *
3846033 AT-TAGAATT
1 ATAAAAAATT
* *
3846042 CTTAAAAAATA
1 -ATAAAAAATT
3846053 ATAAAAAATT
1 ATAAAAAATT
*
3846063 GTAAAAAATT
1 ATAAAAAATT
3846073 ATTATAAAAATT
1 A-TA-AAAAATT
3846085 -TAAAAAAT
1 ATAAAAAAT
3846093 CTTAAAAACT
Statistics
Matches: 106, Mismatches: 20, Indels: 38
0.65 0.12 0.23
Matches are distributed among these distances:
7 4 0.04
8 5 0.05
9 29 0.27
10 49 0.46
11 10 0.09
12 9 0.08
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (10 bp):
ATAAAAAATT
Found at i:3846035 original size:19 final size:20
Alignment explanation
Indices: 3845997--3846035 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
3845987 ATAAAAAATA
*
3845997 TAAAATTAATAAAACTTATT
1 TAAAATTAATAAAACATATT
3846017 TAAAATTAA-AAAACATATT
1 TAAAATTAATAAAACATATT
3846036 AGAATTCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAATTAATAAAACATATT
Found at i:3846041 original size:18 final size:18
Alignment explanation
Indices: 3845982--3846041 Score: 61
Period size: 17 Copynumber: 3.3 Consensus size: 18
3845972 AAAATCAAAC
3845982 AAATTATAAAAA-ATA-TA
1 AAATTA-AAAAACATATTA
*
3845999 AAATTAATAAAACTTATTTA
1 AAATTAA-AAAACATA-TTA
3846019 AAATTAAAAAACATATTA
1 AAATTAAAAAACATATTA
*
3846037 GAATT
1 AAATT
3846042 CTTAAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 1 0.03
17 10 0.28
18 9 0.25
19 7 0.19
20 9 0.25
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (18 bp):
AAATTAAAAAACATATTA
Found at i:3846062 original size:21 final size:21
Alignment explanation
Indices: 3846038--3846092 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
3846028 AACATATTAG
3846038 AATTCTTAAAAAATAATA-AAA
1 AATT-TTAAAAAATAATATAAA
* *
3846059 AATTGTAAAAAATTATTATAAA
1 AATTTTAAAAAA-TAATATAAA
3846081 AA-TTTAAAAAAT
1 AATTTTAAAAAAT
3846093 CTTAAAAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 8 0.28
21 16 0.55
22 5 0.17
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
AATTTTAAAAAATAATATAAA
Found at i:3846097 original size:10 final size:9
Alignment explanation
Indices: 3846043--3846100 Score: 53
Period size: 10 Copynumber: 5.8 Consensus size: 9
3846033 ATTAGAATTC
3846043 TTAAAAAAT
1 TTAAAAAAT
*
3846052 AATAAAAAAT
1 -TTAAAAAAT
3846062 TGTAAAAAATT
1 T-TAAAAAA-T
3846073 ATTATAAAAAT
1 -TTA-AAAAAT
3846084 TTAAAAAAT
1 TTAAAAAAT
3846093 CTTAAAAA
1 -TTAAAAA
3846101 CTTGAGTTGG
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
9 6 0.15
10 25 0.61
11 4 0.10
12 6 0.15
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (9 bp):
TTAAAAAAT
Found at i:3846545 original size:9 final size:9
Alignment explanation
Indices: 3846531--3846584 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
3846521 AGTTTATTTT
3846531 ATTTTTATA
1 ATTTTTATA
3846540 ATTTTTATA
1 ATTTTTATA
*
3846549 AGTTTATATCA
1 A-TTTTTAT-A
*
3846560 ATTTTAAT-
1 ATTTTTATA
3846568 ATTTTT-T-
1 ATTTTTATA
3846575 ATTTTTATA
1 ATTTTTATA
3846584 A
1 A
3846585 AATTTTAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
7 7 0.19
8 6 0.16
9 11 0.30
10 11 0.30
11 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
ATTTTTATA
Found at i:3846608 original size:22 final size:21
Alignment explanation
Indices: 3846576--3846616 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
3846566 ATATTTTTTA
*
3846576 TTTTTATAAAATTTTAATACG
1 TTTTTATAAAATTTAAATACG
3846597 TTTTTATAAAAATTTAAATA
1 TTTTTAT-AAAATTTAAATA
3846617 TATGTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TTTTTATAAAATTTAAATACG
Found at i:3848330 original size:30 final size:30
Alignment explanation
Indices: 3848294--3848362 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
3848284 AGATGTGCAC
* *
3848294 GGCAACCCCATTCCACTT-ACTGACGAGCAT
1 GGCAACCCCATT-CAATTGACTGACGAACAT
*
3848324 GGCAACCCCGTTCAATTGACTGACGAACAT
1 GGCAACCCCATTCAATTGACTGACGAACAT
*
3848354 GGTAACCCC
1 GGCAACCCC
3848363 GTTTACGTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 4 0.12
30 30 0.88
ACGTcount: A:0.28, C:0.35, G:0.19, T:0.19
Consensus pattern (30 bp):
GGCAACCCCATTCAATTGACTGACGAACAT
Found at i:3854353 original size:30 final size:30
Alignment explanation
Indices: 3854312--3854444 Score: 146
Period size: 30 Copynumber: 4.5 Consensus size: 30
3854302 TTAAATTTTT
*
3854312 TTACATTTTGACCCCTAATCTTTTCTAAAA
1 TTACATTTTGACCCCTAAACTTTTCTAAAA
* *
3854342 TTACCTTTTGACCCCTAAAC-TTTCTCGAAA
1 TTACATTTTGACCCCTAAACTTTTCT-AAAA
* * * *
3854372 TTACATTTTAACCCTTGAACTTTTAT-AAA
1 TTACATTTTGACCCCTAAACTTTTCTAAAA
3854401 TTACATTTTGACCCCTAAAC-TTTCTTAAAA
1 TTACATTTTGACCCCTAAACTTTTC-TAAAA
**
3854431 TTTTATTTTGACCC
1 TTACATTTTGACCC
3854445 TGATATTTTC
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
28 3 0.04
29 26 0.31
30 52 0.61
31 4 0.05
ACGTcount: A:0.29, C:0.23, G:0.05, T:0.43
Consensus pattern (30 bp):
TTACATTTTGACCCCTAAACTTTTCTAAAA
Found at i:3854412 original size:59 final size:60
Alignment explanation
Indices: 3854312--3854425 Score: 169
Period size: 59 Copynumber: 1.9 Consensus size: 60
3854302 TTAAATTTTT
* * *
3854312 TTACATTTTGACCCCTAATCTTTTCTAAAATTACCTTTTGACCCCTAAACTTTCTCGAAA
1 TTACATTTTAACCCCTAATCTTTTATAAAATTACATTTTGACCCCTAAACTTTCTCGAAA
*
3854372 TTACATTTTAACCCTTGAA-CTTTTAT-AAATTACATTTTGACCCCTAAACTTTCT
1 TTACATTTTAACCCCT-AATCTTTTATAAAATTACATTTTGACCCCTAAACTTTCT
3854426 TAAAATTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 27 0.55
60 20 0.41
61 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.04, T:0.42
Consensus pattern (60 bp):
TTACATTTTAACCCCTAATCTTTTATAAAATTACATTTTGACCCCTAAACTTTCTCGAAA
Found at i:3854780 original size:22 final size:22
Alignment explanation
Indices: 3854755--3854801 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
3854745 CCTAACAAAC
3854755 GAAATAAG-AACCAAAGCAAAAA
1 GAAATAAGCAACCAAAG-AAAAA
*
3854777 GAAA-AAGCAAGCAAAGAAAAA
1 GAAATAAGCAACCAAAGAAAAA
3854798 -AAAT
1 GAAAT
3854802 TTTCAAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 3 0.14
21 8 0.36
22 11 0.50
ACGTcount: A:0.70, C:0.11, G:0.15, T:0.04
Consensus pattern (22 bp):
GAAATAAGCAACCAAAGAAAAA
Found at i:3854888 original size:10 final size:10
Alignment explanation
Indices: 3854873--3854898 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
3854863 GGGAAGTGCA
3854873 CCGTCGTCGG
1 CCGTCGTCGG
3854883 CCGTCGTCGG
1 CCGTCGTCGG
3854893 CCGTCG
1 CCGTCG
3854899 CACCGTAGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.42, G:0.38, T:0.19
Consensus pattern (10 bp):
CCGTCGTCGG
Found at i:3854995 original size:9 final size:9
Alignment explanation
Indices: 3854953--3854997 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
3854943 GGGGGCTGAT
*
3854953 AGAAGAAGA
1 AGAAGAAAA
3854962 AGAAGAAAA
1 AGAAGAAAA
*
3854971 AGAAGAAAG
1 AGAAGAAAA
3854980 AG-AGAAAA
1 AGAAGAAAA
3854988 AGAAGAAAA
1 AGAAGAAAA
3854997 A
1 A
3854998 AAATTAACAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
8 7 0.22
9 25 0.78
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (9 bp):
AGAAGAAAA
Found at i:3855114 original size:23 final size:21
Alignment explanation
Indices: 3855070--3855115 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3855060 CCAAGCCCAA
* *
3855070 AGCAAAAAAAAAAGAAGCAGC
1 AGCAAAAAAAAAAAAAGAAGC
3855091 AGCAAAAAAAAGAAAAAGGAAGC
1 AGCAAAAAAAA-AAAAA-GAAGC
3855114 AG
1 AG
3855116 GCCATCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.52
22 4 0.19
23 6 0.29
ACGTcount: A:0.67, C:0.11, G:0.22, T:0.00
Consensus pattern (21 bp):
AGCAAAAAAAAAAAAAGAAGC
Found at i:3855249 original size:18 final size:18
Alignment explanation
Indices: 3855226--3855272 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
3855216 CAACAGGCCA
* *
3855226 AAAAGAAGAGAAAGAAAG
1 AAAAGAAAAAAAAGAAAG
*
3855244 AAAAGAAAAAAAAGAACG
1 AAAAGAAAAAAAAGAAAG
3855262 AAAAAGAAAAA
1 -AAAAGAAAAA
3855273 GTGAAGCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAAAAAGAAAG
Found at i:3855803 original size:20 final size:19
Alignment explanation
Indices: 3855780--3855854 Score: 68
Period size: 19 Copynumber: 4.0 Consensus size: 19
3855770 TTTCAAAATT
3855780 TTCGTGTTTTTTAAAAAAAA
1 TTCGTG-TTTTTAAAAAAAA
*
3855800 TTCGTGTTTCT----AAAA
1 TTCGTGTTTTTAAAAAAAA
*
3855815 TTCTTGTATTTTAAAAAAAAA
1 TTCGTGT-TTTT-AAAAAAAA
*
3855836 TTCGTGTTTTCAAAAAAAA
1 TTCGTGTTTTTAAAAAAAA
3855855 AGTTGTTGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
15 10 0.23
16 3 0.07
19 12 0.27
20 9 0.20
21 10 0.23
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (19 bp):
TTCGTGTTTTTAAAAAAAA
Found at i:3855815 original size:37 final size:35
Alignment explanation
Indices: 3855756--3855850 Score: 120
Period size: 36 Copynumber: 2.6 Consensus size: 35
3855746 GGTACTTCTT
* *
3855756 AAAAAAATCTCGTGTTTCAAAATT-TTCGTGTTTTTTA
1 AAAAAAAT-TCGTGTTTCAAAATTCTT-GT-ATTTTAA
3855793 AAAAAAATTCGTGTTTCTAAAATTCTTGTATTTTAA
1 AAAAAAATTCGTGTTTC-AAAATTCTTGTATTTTAA
3855829 AAAAAAATTCGTGTTTTCAAAA
1 AAAAAAATTCGTG-TTTCAAAA
3855851 AAAAAGTTGT
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
36 31 0.58
37 20 0.38
38 2 0.04
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.42
Consensus pattern (35 bp):
AAAAAAATTCGTGTTTCAAAATTCTTGTATTTTAA
Found at i:3855835 original size:21 final size:20
Alignment explanation
Indices: 3855811--3855855 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
3855801 TCGTGTTTCT
* *
3855811 AAAATTCTTGTATTTTAAAAA
1 AAAATTCGTGT-TTTCAAAAA
3855832 AAAATTCGTGTTTTCAAAAA
1 AAAATTCGTGTTTTCAAAAA
3855852 AAAA
1 AAAA
3855856 GTTGTTGTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.36
Consensus pattern (20 bp):
AAAATTCGTGTTTTCAAAAA
Found at i:3864913 original size:20 final size:20
Alignment explanation
Indices: 3864888--3864927 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
3864878 ATGAGCAACC
*
3864888 TCGACAGGCAACCTAGGTAA
1 TCGACAGGCAACCTAAGTAA
3864908 TCGACAGGCAACCTAAGTAA
1 TCGACAGGCAACCTAAGTAA
3864928 GATAAGAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.15
Consensus pattern (20 bp):
TCGACAGGCAACCTAAGTAA
Found at i:3866205 original size:30 final size:30
Alignment explanation
Indices: 3866170--3866228 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
3866160 CCGCCATTAG
*
3866170 GAAAGTTCCTCTAAACTACTGAAAATAAAA
1 GAAAGTTCCTCTAAACTACAGAAAATAAAA
* *
3866200 GAAAGTTCCTCTAAAGTACAGGAAATAAA
1 GAAAGTTCCTCTAAACTACAGAAAATAAA
3866229 CGGTTCAGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.49, C:0.15, G:0.14, T:0.22
Consensus pattern (30 bp):
GAAAGTTCCTCTAAACTACAGAAAATAAAA
Found at i:3869842 original size:25 final size:25
Alignment explanation
Indices: 3869780--3869862 Score: 96
Period size: 25 Copynumber: 3.3 Consensus size: 25
3869770 GCCATACGAG
*
3869780 CATGTAATCGGGAAGCTC-TTTCAAGC
1 CATGTAAT-GGGAAGCTCATTT-GAGC
* *
3869806 CATATAACGGGAAGCTCATTTGAGC
1 CATGTAATGGGAAGCTCATTTGAGC
* *
3869831 TATGTAATGGGAAGCTCATGTGAGC
1 CATGTAATGGGAAGCTCATTTGAGC
3869856 CATGTAA
1 CATGTAA
3869863 CTAGAAGCTC
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
25 39 0.81
26 9 0.19
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (25 bp):
CATGTAATGGGAAGCTCATTTGAGC
Found at i:3869857 original size:50 final size:50
Alignment explanation
Indices: 3869777--3869872 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 50
3869767 TATGCCATAC
* *
3869777 GAGCATGTAATCGGGAAGCTCTTTCAAGCCATATAACGGGAAGCTCATTT
1 GAGCATGTAATCGGGAAGCTCTGTCAAGCCATATAACGAGAAGCTCATTT
* * *
3869827 GAGCTATGTAAT-GGGAAGCTCATGT-GAGCCATGTAACTAGAAGCTC
1 GAGC-ATGTAATCGGGAAGCTC-TGTCAAGCCATATAACGAGAAGCTC
3869873 CAGAGAGCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
50 30 0.77
51 9 0.23
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (50 bp):
GAGCATGTAATCGGGAAGCTCTGTCAAGCCATATAACGAGAAGCTCATTT
Found at i:3869869 original size:25 final size:25
Alignment explanation
Indices: 3869816--3869872 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
3869806 CATATAACGG
* * *
3869816 GAAGCTCATTTGAGCTATGTAATGG
1 GAAGCTCATGTGAGCCATGTAATGA
3869841 GAAGCTCATGTGAGCCATGTAACT-A
1 GAAGCTCATGTGAGCCATGTAA-TGA
3869866 GAAGCTC
1 GAAGCTC
3869873 CAGAGAGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 27 0.96
26 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (25 bp):
GAAGCTCATGTGAGCCATGTAATGA
Found at i:3876219 original size:12 final size:11
Alignment explanation
Indices: 3876203--3876242 Score: 50
Period size: 10 Copynumber: 3.8 Consensus size: 11
3876193 TAGTAACAAT
3876203 AATAATAAATA
1 AATAATAAATA
3876214 AGATAAT-AATA
1 A-ATAATAAATA
3876225 AATAA-AAATA
1 AATAATAAATA
3876235 AA-AATAAA
1 AATAATAAA
3876243 AACTAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
9 2 0.08
10 13 0.50
11 6 0.23
12 5 0.19
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (11 bp):
AATAATAAATA
Found at i:3876219 original size:15 final size:14
Alignment explanation
Indices: 3876200--3876242 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
3876190 AAATAGTAAC
3876200 AATAATAATAAATA
1 AATAATAATAAATA
3876214 AGATAATAATAAATA
1 A-ATAATAATAAATA
3876229 AA-AATAA-AAATA
1 AATAATAATAAATA
3876241 AA
1 AA
3876243 AACTAAAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.25
13 5 0.18
14 2 0.07
15 14 0.50
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (14 bp):
AATAATAATAAATA
Found at i:3876242 original size:6 final size:6
Alignment explanation
Indices: 3876203--3876250 Score: 51
Period size: 7 Copynumber: 7.2 Consensus size: 6
3876193 TAGTAACAAT
3876203 AATAATA AATAAGA TAATAATA AATAAA AATAAA AATAAA AACTAAA A
1 AATAA-A AATAA-A -AATAA-A AATAAA AATAAA AATAAA AA-TAAA A
3876251 TGGACCCAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
6 15 0.41
7 16 0.43
8 6 0.16
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (6 bp):
AATAAA
Found at i:3876251 original size:12 final size:12
Alignment explanation
Indices: 3876203--3876250 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 12
3876193 TAGTAACAAT
3876203 AATAATAAATAAGA
1 AATAA-AAATAA-A
3876217 TAATAATAAATAAA
1 -AATAA-AAATAAA
3876231 AATAAAAATAAA
1 AATAAAAATAAA
3876243 AACTAAAA
1 AA-TAAAA
3876251 TGGACCCAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 9 0.28
13 10 0.31
14 1 0.03
15 12 0.38
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (12 bp):
AATAAAAATAAA
Found at i:3876722 original size:16 final size:16
Alignment explanation
Indices: 3876701--3876732 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
3876691 CCCTAGCGTC
3876701 CTCGCGCCGCCTCTCA
1 CTCGCGCCGCCTCTCA
3876717 CTCGCGCCGCCTCTCA
1 CTCGCGCCGCCTCTCA
3876733 GGTGATTCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.56, G:0.19, T:0.19
Consensus pattern (16 bp):
CTCGCGCCGCCTCTCA
Found at i:3878089 original size:44 final size:44
Alignment explanation
Indices: 3878041--3878174 Score: 225
Period size: 44 Copynumber: 3.0 Consensus size: 44
3878031 ATATGTTGTA
*
3878041 TTTGATCTACTTCACGCCGA-TACATGAAGACAAGATCTGTTTTC
1 TTTGATCTACTTCACGCC-ACTACATGAAGACAAGATCTGCTTTC
*
3878085 TTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTC
1 TTTGATCTACTTCACGCCACTACATGAAGACAAGATCTGCTTTC
*
3878129 TTTGATCTACTTCACGCCACTGCATGAAGACAAGATCTGCTTTC
1 TTTGATCTACTTCACGCCACTACATGAAGACAAGATCTGCTTTC
3878173 TT
1 TT
3878175 CAATCTGTTC
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
43 1 0.01
44 85 0.99
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.34
Consensus pattern (44 bp):
TTTGATCTACTTCACGCCACTACATGAAGACAAGATCTGCTTTC
Found at i:3878103 original size:88 final size:88
Alignment explanation
Indices: 3878002--3878174 Score: 199
Period size: 88 Copynumber: 2.0 Consensus size: 88
3877992 TAATCTTCAC
** ** *
3878002 TCTACTTGCCGCCAGTATGGGGGGATAAAATATG-TTGTATTTGATCTACTTCACGCCGA-TACA
1 TCTACTTGCCGCCAGTACAGGAAGACAAAATATGCTT-TATTTGATCTACTTCACGCC-ACTACA
*
3878065 TGAAGACAAGATCTGTTTTCTTTGA
64 TGAAGACAAGATCTGCTTTCTTTGA
* * * * *
3878090 TCTACTT-CACGCCAGTACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCACGCCACTGCAT
1 TCTACTTGC-CGCCAGTACAGGAAGACAAAATATGCTTTATTTGATCTACTTCACGCCACTACAT
3878154 GAAGACAAGATCTGCTTTCTT
65 GAAGACAAGATCTGCTTTCTT
3878175 CAATCTGTTC
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
87 2 0.03
88 67 0.94
89 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (88 bp):
TCTACTTGCCGCCAGTACAGGAAGACAAAATATGCTTTATTTGATCTACTTCACGCCACTACATG
AAGACAAGATCTGCTTTCTTTGA
Found at i:3878359 original size:50 final size:50
Alignment explanation
Indices: 3878305--3878513 Score: 177
Period size: 50 Copynumber: 4.2 Consensus size: 50
3878295 GATCTGTAAT
* ** *
3878305 CTTCAATTTGTTCAACTGCAATGTTGGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAACTGCAATGTCAGGGAAACCAGATCCGCCGTTGTAG
* * ** *** *
3878355 CTTCAATCTGTTCCACCGCACCGTCAGGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAACTGCAATGTCAGGGAAACCAGATCCGCCGTTGTAG
* * * * *
3878405 CTTTAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTTGTAG
1 CTTCAATCTGTTCAACTGCAATGTCAGGGAAACCAGATCCGCCGTTGTAG
** * * *** *
3878455 CTTCAATCTGTTCCGCTGCACTG-CTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAACTGCAATGTC-AGGGAAACCAGATCCGCCGTTGTAG
3878505 CTTCAATCT
1 CTTCAATCT
3878514 TTTTAAGTGT
Statistics
Matches: 120, Mismatches: 38, Indels: 2
0.75 0.24 0.01
Matches are distributed among these distances:
49 1 0.01
50 119 0.99
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.29
Consensus pattern (50 bp):
CTTCAATCTGTTCAACTGCAATGTCAGGGAAACCAGATCCGCCGTTGTAG
Found at i:3878441 original size:100 final size:100
Alignment explanation
Indices: 3878331--3878621 Score: 404
Period size: 100 Copynumber: 2.9 Consensus size: 100
3878321 TGCAATGTTG
* * * *
3878331 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACCGCACCG-TCAGGGAAGTAAGATCC
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCT-AAGGAAGTAAGATCC
*
3878395 GCCGTTGTGGCTTTAATCTTTTTAATTGCAATATCA
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
*
3878431 GGGAAACCAGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCG
* *
3878496 CCGTTGTGGCTTCAATCTTTTTAAGTGTAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * *** * * * *
3878531 AGGAGACCAGATCCAATGTCGTAGCTTCCATCTGTTTCGTTGCACTGCTAAAGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCG
*
3878596 CCGTTGTGGCTTCAATCTTTTAAATT
66 CCGTTGTGGCTTCAATCTTTTTAATT
3878622 TTCAACCCGC
Statistics
Matches: 170, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
100 169 0.99
101 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (100 bp):
GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCG
CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
Found at i:3878534 original size:50 final size:50
Alignment explanation
Indices: 3878382--3878616 Score: 158
Period size: 50 Copynumber: 4.7 Consensus size: 50
3878372 GCACCGTCAG
* * *
3878382 GGAAGTAAGATCCGCCGTTGTGGCTTTAATCTTTTTAATTGCAATATCAG
1 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAGTGCAATATCAA
*** * * ** * *
3878432 GGAAACCAGATCCGCCGTTGTAGCTTCAATC-TGTTCCGCTGCACT-GCTAA
1 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAG-TGCAATATC-AA
*
3878482 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAGTGTAATATCAA
1 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAGTGCAATATCAA
*** * * * * * * *
3878532 GG-AG-ACCAGATCCAATGTCGTAGCTTCCATCTGTTT-CGTTGCACT-GCTAA
1 GGAAGTA--AGATCCGCCGTTGTGGCTTCAATCTTTTTAAG-TGCAATATC-AA
*
3878582 AGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTT
1 GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTT
3878617 AAATTTTCAA
Statistics
Matches: 134, Mismatches: 41, Indels: 20
0.69 0.21 0.10
Matches are distributed among these distances:
48 1 0.01
49 8 0.06
50 117 0.87
51 7 0.05
52 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (50 bp):
GGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAGTGCAATATCAA
Found at i:3885065 original size:18 final size:19
Alignment explanation
Indices: 3885026--3885066 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
3885016 AATTACAAAA
*
3885026 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTAT
3885045 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTAT
3885063 AAAA
1 AAAA
3885067 AATCCAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:3886292 original size:40 final size:40
Alignment explanation
Indices: 3886248--3886333 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
3886238 ACGACTAATG
* * * **
3886248 TTTTTATTAGTTTATTGCATATAAATTGTTGAAA-TATTAA
1 TTTTTATTAATTCATTGCAGATAAATAATT-AAATTATTAA
3886288 TTTTTATTAATTCATTGCAGATAAATAATTAAATTATTAA
1 TTTTTATTAATTCATTGCAGATAAATAATTAAATTATTAA
3886328 TTTTTA
1 TTTTTA
3886334 ACAATAAGGT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.52
Consensus pattern (40 bp):
TTTTTATTAATTCATTGCAGATAAATAATTAAATTATTAA
Found at i:3889350 original size:6 final size:6
Alignment explanation
Indices: 3889332--3889384 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
3889322 GTTGTCTTCT
* * * * * *
3889332 TTATTG TTATTG TTGTTG TTATTA TTATTA TTATTA TTATTA TTATTA
1 TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG
3889380 TTATT
1 TTATT
3889385 TGCTTTCTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.68
Consensus pattern (6 bp):
TTATTG
Found at i:3889356 original size:3 final size:3
Alignment explanation
Indices: 3889350--3889384 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
3889340 ATTGTTGTTG
3889350 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
3889385 TGCTTTCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:3890565 original size:26 final size:28
Alignment explanation
Indices: 3890536--3890593 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 28
3890526 TAATCATGAT
3890536 TTAAACAAATATTCATA-TTTATA-TA-A
1 TTAAA-AAATATTCATATTTTATACTAGA
3890562 TT--AAAATATTCATATTTTATACTAGA
1 TTAAAAAATATTCATATTTTATACTAGA
3890588 TTAAAA
1 TTAAAA
3890594 TATGTGATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
23 11 0.41
24 7 0.26
25 2 0.07
26 5 0.19
28 2 0.07
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (28 bp):
TTAAAAAATATTCATATTTTATACTAGA
Found at i:3890569 original size:23 final size:26
Alignment explanation
Indices: 3890542--3890596 Score: 89
Period size: 23 Copynumber: 2.2 Consensus size: 26
3890532 TGATTTAAAC
3890542 AAATATTCATA-TTTATA-TA-ATTA
1 AAATATTCATATTTTATACTAGATTA
3890565 AAATATTCATATTTTATACTAGATTA
1 AAATATTCATATTTTATACTAGATTA
3890591 AAATAT
1 AAATAT
3890597 GTGATAAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 11 0.38
24 6 0.21
25 2 0.07
26 10 0.34
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.45
Consensus pattern (26 bp):
AAATATTCATATTTTATACTAGATTA
Found at i:3900683 original size:7 final size:7
Alignment explanation
Indices: 3900671--3900715 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
3900661 TATTTTTCTC
3900671 ATAAAAA
1 ATAAAAA
3900678 ATAAAAA
1 ATAAAAA
3900685 ATTAAAAA
1 A-TAAAAA
**
3900693 ATATTAA
1 ATAAAAA
3900700 ATAAAAA
1 ATAAAAA
*
3900707 ATTAAAA
1 ATAAAAA
3900714 AT
1 AT
3900716 GGATATAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
7 25 0.78
8 7 0.22
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
ATAAAAA
Found at i:3901363 original size:21 final size:21
Alignment explanation
Indices: 3901338--3901386 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
3901328 GTTTATATCT
**
3901338 ATTTTAATAAATTTTTATGGA
1 ATTTTAATAAATTTTTATAAA
*
3901359 ATTTTAATACATTTTTATAAA
1 ATTTTAATAAATTTTTATAAA
3901380 ATTTTAA
1 ATTTTAA
3901387 ATATGTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (21 bp):
ATTTTAATAAATTTTTATAAA
Found at i:3901460 original size:18 final size:19
Alignment explanation
Indices: 3901440--3901567 Score: 79
Period size: 20 Copynumber: 6.7 Consensus size: 19
3901430 ATTTATTAGG
*
3901440 TTTTTAT-ATTTTTATAAG
1 TTTTTATGATTTTTATAAT
* * * *
3901458 TTTATATCAATTTTCATACT
1 TTTTTAT-GATTTTTATAAT
*
3901478 TTTTTA--ATATTTAATAA-
1 TTTTTATGAT-TTTTATAAT
3901495 TTTTTAT-ATTTTTGATAATT
1 TTTTTATGATTTTT-ATAA-T
* *
3901515 TTTTTCTGATTTTTGATATT
1 TTTTTATGATTTTT-ATAAT
*
3901535 TTTTTCTGATTTTTGATAA-
1 TTTTTATGATTTTT-ATAAT
3901554 TTTTTATGATTTTT
1 TTTTTATGATTTTT
3901568 TATTCATTTT
Statistics
Matches: 90, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
17 11 0.12
18 18 0.20
19 13 0.14
20 38 0.42
21 10 0.11
ACGTcount: A:0.25, C:0.04, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTTTATGATTTTTATAAT
Found at i:3901527 original size:20 final size:21
Alignment explanation
Indices: 3901502--3901558 Score: 107
Period size: 20 Copynumber: 2.8 Consensus size: 21
3901492 TAATTTTTAT
3901502 ATTTTTGATAATTTTTTTCTG
1 ATTTTTGATAATTTTTTTCTG
3901523 ATTTTTGAT-ATTTTTTTCTG
1 ATTTTTGATAATTTTTTTCTG
3901543 ATTTTTGATAATTTTT
1 ATTTTTGATAATTTTT
3901559 ATGATTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 20 0.57
21 15 0.43
ACGTcount: A:0.19, C:0.04, G:0.09, T:0.68
Consensus pattern (21 bp):
ATTTTTGATAATTTTTTTCTG
Found at i:3901535 original size:9 final size:10
Alignment explanation
Indices: 3901491--3901567 Score: 52
Period size: 10 Copynumber: 7.9 Consensus size: 10
3901481 TTAATATTTA
3901491 ATAATTTTT-
1 ATAATTTTTG
3901500 AT-ATTTTTG
1 ATAATTTTTG
*
3901509 ATAATTTTTTT
1 ATAA-TTTTTG
* *
3901520 CTGATTTTTG
1 ATAATTTTTG
* *
3901530 ATATTTTTTT
1 ATAATTTTTG
* *
3901540 CTGATTTTTG
1 ATAATTTTTG
3901550 ATAATTTTT-
1 ATAATTTTTG
*
3901559 ATGATTTTT
1 ATAATTTTT
3901568 TATTCATTTT
Statistics
Matches: 50, Mismatches: 15, Indels: 6
0.70 0.21 0.08
Matches are distributed among these distances:
8 6 0.12
9 12 0.24
10 25 0.50
11 7 0.14
ACGTcount: A:0.22, C:0.03, G:0.08, T:0.68
Consensus pattern (10 bp):
ATAATTTTTG
Found at i:3901580 original size:20 final size:19
Alignment explanation
Indices: 3901491--3901567 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 19
3901481 TTAATATTTA
3901491 ATAATTTTTAT-ATTTTTG
1 ATAATTTTTATGATTTTTG
*
3901509 ATAATTTTTTTCTGATTTTTG
1 ATAA--TTTTTATGATTTTTG
* *
3901530 ATATTTTTTTCTGATTTTTG
1 ATA-ATTTTTATGATTTTTG
3901550 ATAATTTTTATGATTTTT
1 ATAATTTTTATGATTTTT
3901568 TATTCATTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
18 4 0.08
19 13 0.25
20 24 0.47
21 10 0.20
ACGTcount: A:0.22, C:0.03, G:0.08, T:0.68
Consensus pattern (19 bp):
ATAATTTTTATGATTTTTG
Found at i:3905411 original size:41 final size:41
Alignment explanation
Indices: 3905354--3905478 Score: 241
Period size: 41 Copynumber: 3.0 Consensus size: 41
3905344 GTTTGGAGAA
3905354 TTGAAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCT
1 TTGAAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCT
*
3905395 TTGAAATTTAATTCATTTCATCCAATTTGTGAGTAAAACCT
1 TTGAAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCT
3905436 TTGAAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCT
1 TTGAAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCT
3905477 TT
1 TT
3905479 AGTACAAAAG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 82 1.00
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.41
Consensus pattern (41 bp):
TTGAAATTTAATTCATTCCATCCAATTTGTGAGTAAAACCT
Found at i:3919159 original size:21 final size:20
Alignment explanation
Indices: 3919125--3919172 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
3919115 AATTTTACAT
3919125 CTAAAAAATTATAAAAAAAC
1 CTAAAAAATTATAAAAAAAC
*
3919145 CTAAAGAA-TATATAAAAAAC
1 CTAAAAAATTATA-AAAAAAC
*
3919165 TTAAAAAA
1 CTAAAAAA
3919173 AAAACCTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.69, C:0.08, G:0.02, T:0.21
Consensus pattern (20 bp):
CTAAAAAATTATAAAAAAAC
Found at i:3921259 original size:3 final size:3
Alignment explanation
Indices: 3921251--3921281 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
3921241 CCCTGTTTCT
3921251 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
3921282 ATCTTAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Done.