Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 15 of 214
Found at i:4125390 original size:26 final size:26
Alignment explanation
Indices: 4125361--4125428 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
4125351 CCCGATATAT
*
4125361 GGCTCTTCATGAG-TTTTTCGATTAAA
1 GGCTCTTCATGAGCTTCTT-GATTAAA
** *
4125387 GGCTCTTTGTGAGCTTCTTGATTAAT
1 GGCTCTTCATGAGCTTCTTGATTAAA
*
4125413 GGCTCTTC-GGAGCTTC
1 GGCTCTTCATGAGCTTC
4125429 CCGATATGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
25 7 0.20
26 24 0.69
27 4 0.11
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (26 bp):
GGCTCTTCATGAGCTTCTTGATTAAA
Found at i:4125498 original size:24 final size:25
Alignment explanation
Indices: 4125326--4125549 Score: 90
Period size: 24 Copynumber: 9.1 Consensus size: 25
4125316 AGCATCTCGA
* * *
4125326 TCCCGTTAATAGCTATT-ATGAGCA
1 TCCCGTTAATGGCTCTTCATGAGCT
* *
4125350 TCCCGATATATGGCTCTTCATGAGTT
1 TCCCGTTA-ATGGCTCTTCATGAGCT
** * **
4125376 TTTCGATTAAAGGCTCTTTGTGAGCT
1 TCCCG-TTAATGGCTCTTCATGAGCT
** *
4125402 TCTTGATTAATGGCTCTTC-GGAGCT
1 TCCCG-TTAATGGCTCTTCATGAGCT
* * * *
4125427 TCCCGAT-ATGGCTC-ACTTGAACT
1 TCCCGTTAATGGCTCTTCATGAGCT
** *
4125450 TCCCACTATATGGCT-ATC-TGAAGCT
1 TCCCGTTA-ATGGCTCTTCATG-AGCT
4125475 TCCCGTTAATGGCTCTTCA-GAGCT
1 TCCCGTTAATGGCTCTTCATGAGCT
* * * * *
4125499 ACCTGTTATTAGCTC-GCATGAGCT
1 TCCCGTTAATGGCTCTTCATGAGCT
*
4125523 TCTCGATT-ATGGCTCTT-ATGAGCT
1 TCCCG-TTAATGGCTCTTCATGAGCT
4125547 TCC
1 TCC
4125550 TATTATACAG
Statistics
Matches: 145, Mismatches: 42, Indels: 26
0.68 0.20 0.12
Matches are distributed among these distances:
22 1 0.01
23 18 0.12
24 52 0.36
25 36 0.25
26 36 0.25
27 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (25 bp):
TCCCGTTAATGGCTCTTCATGAGCT
Found at i:4125523 original size:48 final size:49
Alignment explanation
Indices: 4125470--4125587 Score: 125
Period size: 48 Copynumber: 2.4 Consensus size: 49
4125460 TGGCTATCTG
* * *
4125470 AAGCTTCCCGTTAATGGCTCTTCA-GAGCTACCTGTTAT-TAGCTCGCAT
1 AAGCTTCCCGTTAATGGCTCTT-ATGAGCTACCTATTATACAGCTCGAAT
* * *
4125518 GAGCTTCTCGATT-ATGGCTCTTATGAGCTTCCTATTATACAGCTCGAAT
1 AAGCTTCCCG-TTAATGGCTCTTATGAGCTACCTATTATACAGCTCGAAT
*
4125567 AAGCTTCCTGTTATATGGCTC
1 AAGCTTCCCGTTA-ATGGCTC
4125588 GAGAGAGGGC
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
47 1 0.02
48 31 0.55
49 17 0.30
50 7 0.12
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (49 bp):
AAGCTTCCCGTTAATGGCTCTTATGAGCTACCTATTATACAGCTCGAAT
Found at i:4125785 original size:5 final size:5
Alignment explanation
Indices: 4125775--4125802 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
4125765 ATGAAGTACA
4125775 ATGAT ATGAT ATGAT ATGAT ATGAT ATG
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATG
4125803 TACATGTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
ATGAT
Found at i:4129039 original size:21 final size:24
Alignment explanation
Indices: 4128995--4129040 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 24
4128985 ACTCACCCTA
4128995 TTCTACTTAGAATAAGACATTATT
1 TTCTACTTAGAATAAGACATTATT
*
4129019 TTCTA-TTA-AATAA-ATATTATT
1 TTCTACTTAGAATAAGACATTATT
4129040 T
1 T
4129041 GTATTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 5 0.24
23 3 0.14
24 5 0.24
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (24 bp):
TTCTACTTAGAATAAGACATTATT
Found at i:4129194 original size:20 final size:19
Alignment explanation
Indices: 4129165--4129202 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
4129155 AAGTAGTGAG
4129165 AATTTATTTTTTAAGAATA
1 AATTTATTTTTTAAGAATA
4129184 AATTATATTTTTTAAGAAT
1 AATT-TATTTTTTAAGAAT
4129203 TACAATTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
AATTTATTTTTTAAGAATA
Found at i:4131266 original size:20 final size:20
Alignment explanation
Indices: 4131241--4131291 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
4131231 ATTATTTATT
*
4131241 TATAAAATTTAATTTAAATA
1 TATAAAATATAATTTAAATA
* *
4131261 TATAAACTATATTTTAAATA
1 TATAAAATATAATTTAAATA
4131281 T-TAAAATATAA
1 TATAAAATATAA
4131292 CCAATAACAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TATAAAATATAATTTAAATA
Found at i:4132409 original size:28 final size:28
Alignment explanation
Indices: 4132376--4132449 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
4132366 CCTATTTATT
* * *
4132376 AAATTTTAGAGTTTTTCCAATATTTTCC
1 AAATTTTACACTTTTGCCAATATTTTCC
* **
4132404 AGATTTTACACTTTTGCCCCTATTTTCC
1 AAATTTTACACTTTTGCCAATATTTTCC
4132432 AAATTTTACACTTTTGCC
1 AAATTTTACACTTTTGCC
4132450 CTATTTTTTC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.22, G:0.07, T:0.47
Consensus pattern (28 bp):
AAATTTTACACTTTTGCCAATATTTTCC
Found at i:4132436 original size:56 final size:55
Alignment explanation
Indices: 4132363--4132540 Score: 157
Period size: 56 Copynumber: 3.2 Consensus size: 55
4132353 CAGTCTTGTG
* * * * *
4132363 TCCCCTATTTAT-TAAATTTTAGAGTTTTTCCA-ATATTTTCCAGATTTTACACTTT
1 TCCCCTATTT-TCCAAATTTTACACTTTTGCCATAT-TTTTCCAGATTTTACAATTT
* *
4132418 TGCCCCTATTTTCCAAATTTTACACTTTTGCCCTATTTTTTCAGATTTTACAATTT
1 T-CCCCTATTTTCCAAATTTTACACTTTTGCCATATTTTTCCAGATTTTACAATTT
* * * * * *
4132474 TCCCCTATTCT-AAAGATTTTACAGTTTTGCTCGTATTTTT-CAAATTTTATAATTCT
1 TCCCCTATTTTCCAA-ATTTTACACTTTTGC-CATATTTTTCCAGATTTTACAATT-T
4132530 TCCCCTATTTT
1 TCCCCTATTTT
4132541 TTAGATTTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
54 2 0.02
55 37 0.36
56 62 0.60
57 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.06, T:0.51
Consensus pattern (55 bp):
TCCCCTATTTTCCAAATTTTACACTTTTGCCATATTTTTCCAGATTTTACAATTT
Found at i:4132450 original size:28 final size:28
Alignment explanation
Indices: 4132396--4132846 Score: 159
Period size: 28 Copynumber: 15.8 Consensus size: 28
4132386 GTTTTTCCAA
* *
4132396 TATTTTCCAGATTTTACACTTTTGCCCC
1 TATTTTCCAAATTTTACAATTTTGCCCC
*
4132424 TATTTTCCAAATTTTACACTTTTG-CCC
1 TATTTTCCAAATTTTACAATTTTGCCCC
* *
4132451 TATTTTTTCAGATTTTACAATTTT-CCCC
1 TA-TTTTCCAAATTTTACAATTTTGCCCC
* * * * *
4132479 TATTCT-AAAGATTTTACAGTTTTGCTCG
1 TATTTTCCAA-ATTTTACAATTTTGCCCC
* *
4132507 TATTTTTCAAATTTTATAATTCTT-CCCC
1 TATTTTCCAAATTTTACAATT-TTGCCCC
** * * * * *
4132535 TATTTTTTAGATTTTATAGTTTAGCCCT
1 TATTTTCCAAATTTTACAATTTTGCCCC
* * *
4132563 TATTTTTCCCCTATTTTTCATATTTTATAGTTTAGCCCC
1 TA-TTTT--CC-A------A-ATTTTACAATTTTGCCCC
* * *
4132602 TATTTTTCAAATTTTACAATTTTATCCAC
1 TATTTTCCAAATTTTACAATTTT-GCCCC
** * * * * *
4132631 TATTTTTTAGATTTTATAGTTTTTCCAC
1 TATTTTCCAAATTTTACAATTTTGCCCC
* ** *
4132659 TTTTTTTTAGATTTTACAATTTT-CCCC
1 TATTTTCCAAATTTTACAATTTTGCCCC
* * * * *
4132686 TATTTTTCAGATTTTACAACTTAG-CCT
1 TATTTTCCAAATTTTACAATTTTGCCCC
* *
4132713 TATTTT-TATATTTTA-AATTTTGCCCAC
1 TATTTTCCAAATTTTACAATTTTGCCC-C
* *
4132740 -ATTTTTCAAATTTTAAAATTTTG-CCC
1 TATTTTCCAAATTTTACAATTTTGCCCC
** * * *
4132766 TATTTTTTAGATTTTATAGTTTTGCCCC
1 TATTTTCCAAATTTTACAATTTTGCCCC
** *
4132794 TATTTTTTAAAATTTTACTATTTTGTCCCC
1 TA-TTTTCCAAATTTTACAATTTTG-CCCC
* *
4132824 TGCTTTACC-AATTTTACAATTTT
1 T-ATTTTCCAAATTTTACAATTTT
4132847 ACCCAAAATT
Statistics
Matches: 329, Mismatches: 65, Indels: 57
0.73 0.14 0.13
Matches are distributed among these distances:
25 5 0.02
26 16 0.05
27 79 0.24
28 134 0.41
29 61 0.19
30 8 0.02
32 1 0.00
35 1 0.00
36 1 0.00
38 4 0.01
39 19 0.06
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.53
Consensus pattern (28 bp):
TATTTTCCAAATTTTACAATTTTGCCCC
Found at i:4132547 original size:56 final size:55
Alignment explanation
Indices: 4132363--4132800 Score: 265
Period size: 55 Copynumber: 7.7 Consensus size: 55
4132353 CAGTCTTGTG
* * * * ** * *
4132363 TCCCCTATTTATTAAATTTTAGAGTTTTTCCAATATTTTCCAGATTTTACACTTT
1 TCCCCTATTTTTTAGATTTTACAGTTTTGCCCCTATTTTTCAGATTTTACAATTT
** * *
4132418 TGCCCCTATTTTCCAAATTTTACACTTTTG-CCCTATTTTTTCAGATTTTACAATTT
1 T-CCCCTATTTTTTAGATTTTACAGTTTTGCCCCTA-TTTTTCAGATTTTACAATTT
* ** * * * *
4132474 TCCCCTATTCTAAAGATTTTACAGTTTTGCTCGTATTTTTCAAATTTTATAATTCT
1 TCCCCTATTTTTTAGATTTTACAGTTTTGCCCCTATTTTTCAGATTTTACAATT-T
* * * * *
4132530 TCCCCTATTTTTTAGATTTTATAGTTTAGCCCTTATTTTTCCCCTATTTTTCATATTTTATAGTT
1 TCCCCTATTTTTTAGA-TTT-TA---CAG------TTTTGCCCCTATTTTTCAGATTTTACAATT
4132595 T
55 T
* * * * * * * * *
4132596 AGCCCCTATTTTTCAAATTTTACAATTTTATCCACTATTTTTTAGATTTTATAGTTTT
1 -TCCCCTATTTTTTAGATTTTACAGTTTT-GCCCCTATTTTTCAGATTTTACA-ATTT
* * * *
4132654 TCCACTTTTTTTTAGATTTTACAATTTT-CCCCTATTTTTCAGATTTTACAACTT
1 TCCCCTATTTTTTAGATTTTACAGTTTTGCCCCTATTTTTCAGATTTTACAATTT
** * * * * *
4132708 AGCCTTA-TTTTTATATTTTA-AATTTTGCCCAC-ATTTTTCAAATTTTAAAATTT
1 TCCCCTATTTTTTAGATTTTACAGTTTTGCCC-CTATTTTTCAGATTTTACAATTT
* *
4132761 TGCCCTATTTTTTAGATTTTATAGTTTTGCCCCTATTTTT
1 TCCCCTATTTTTTAGATTTTACAGTTTTGCCCCTATTTTT
4132801 TAAAATTTTA
Statistics
Matches: 300, Mismatches: 60, Indels: 46
0.74 0.15 0.11
Matches are distributed among these distances:
52 6 0.02
53 38 0.13
54 18 0.06
55 78 0.26
56 62 0.21
57 46 0.15
58 5 0.02
61 2 0.01
62 1 0.00
65 2 0.01
66 4 0.01
67 38 0.13
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.53
Consensus pattern (55 bp):
TCCCCTATTTTTTAGATTTTACAGTTTTGCCCCTATTTTTCAGATTTTACAATTT
Found at i:4132572 original size:39 final size:39
Alignment explanation
Indices: 4132529--4132609 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
4132519 TTTATAATTC
* *
4132529 TTCCCCTATTTTTTAGATTTTATAGTTTAGCCCTTATTT
1 TTCCCCTATTTTTCAGATTTTATAGTTTAGCCCCTATTT
*
4132568 TTCCCCTATTTTTCATATTTTATAGTTTAGCCCCTATTT
1 TTCCCCTATTTTTCAGATTTTATAGTTTAGCCCCTATTT
4132607 TTC
1 TTC
4132610 AAATTTTACA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.17, C:0.21, G:0.06, T:0.56
Consensus pattern (39 bp):
TTCCCCTATTTTTCAGATTTTATAGTTTAGCCCCTATTT
Found at i:4132595 original size:95 final size:96
Alignment explanation
Indices: 4132471--4132652 Score: 258
Period size: 95 Copynumber: 1.9 Consensus size: 96
4132461 GATTTTACAA
* * * * *
4132471 TTTTCCCCTATTCTAAAGATTTTACAGTTTTGCTCGTATTTTTCAAATTTTATAATTCT-TCCCC
1 TTTTCCCCTATTCTAAAGATTTTACAGTTTAGCCCCTATTTTTCAAATTTTACAATTCTATCCAC
4132535 TATTTTTTAGATTTTATAGTTTAGCCCTTAT
66 TATTTTTTAGATTTTATAGTTTAGCCCTTAT
* ** * * *
4132566 TTTTCCCCTATTTTTCATATTTTATAGTTTAGCCCCTATTTTTCAAATTTTACAATTTTATCCAC
1 TTTTCCCCTATTCTAAAGATTTTACAGTTTAGCCCCTATTTTTCAAATTTTACAATTCTATCCAC
4132631 TATTTTTTAGATTTTATAGTTT
66 TATTTTTTAGATTTTATAGTTT
4132653 TTCCACTTTT
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
95 49 0.65
96 26 0.35
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (96 bp):
TTTTCCCCTATTCTAAAGATTTTACAGTTTAGCCCCTATTTTTCAAATTTTACAATTCTATCCAC
TATTTTTTAGATTTTATAGTTTAGCCCTTAT
Found at i:4132663 original size:150 final size:148
Alignment explanation
Indices: 4132415--4132719 Score: 330
Period size: 150 Copynumber: 2.0 Consensus size: 148
4132405 GATTTTACAC
* * * *
4132415 TTTTGCCCCTATTTTCCAAATTTTACACTTTTGCCCTATTTTTTCAGATTTTACAATTTTCCCCT
1 TTTTTCCCCTATTTTCCAAATTTTACACTTTAGCCCTATTTTTTCAAATTTTACAATTTTCCACT
* * *
4132480 ATTCTAAAGATTTTACAGTTTTGCTCGTA-TTTTTCAAATTTTATAATTCTTCCCCTATTTTTTA
66 ATTCTAAAGATTTTACAGTTTT-CTCGCATTTTTTCAAATTTTACAATT-TTCCCCTATTTTTCA
* **
4132544 GATTTTATAGTTTAGCCCTTA
129 GATTTTACAACTTAG-CCTTA
* * * *
4132565 TTTTTCCCCTATTTTTCATATTTTATAGTTTAGCCCCTA-TTTTTCAAATTTTACAATTTTATCC
1 TTTTTCCCCTATTTTCCAAATTTTACACTTTAG-CCCTATTTTTTCAAATTTTACAA-TTT-TCC
* ** * * *
4132629 ACTATTTTTTAGATTTTATAGTTTT-TC-CACTTTTTTTTAGATTTTACAATTTTCCCCTATTTT
63 ACTATTCTAAAGATTTTACAGTTTTCTCGCA--TTTTTTCAAATTTTACAATTTTCCCCTATTTT
4132692 TCAGATTTTACAACTTAGCCTTA
126 TCAGATTTTACAACTTAGCCTTA
4132715 TTTTT
1 TTTTT
4132720 ATATTTTAAA
Statistics
Matches: 129, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
149 1 0.01
150 55 0.43
151 34 0.26
152 39 0.30
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.54
Consensus pattern (148 bp):
TTTTTCCCCTATTTTCCAAATTTTACACTTTAGCCCTATTTTTTCAAATTTTACAATTTTCCACT
ATTCTAAAGATTTTACAGTTTTCTCGCATTTTTTCAAATTTTACAATTTTCCCCTATTTTTCAGA
TTTTACAACTTAGCCTTA
Found at i:4132681 original size:27 final size:27
Alignment explanation
Indices: 4132601--4132817 Score: 147
Period size: 27 Copynumber: 7.9 Consensus size: 27
4132591 AGTTTAGCCC
* *
4132601 CTATTTTTCAAATTTTACAATTTTATCCA
1 CTATTTTTTAGATTTTACAA-TTT-TCCA
* *
4132630 CTATTTTTTAGATTTTATAGTTTTTCCA
1 CTATTTTTTAGATTTTACA-ATTTTCCA
* *
4132658 CTTTTTTTTAGATTTTACAATTTTCCC
1 CTATTTTTTAGATTTTACAATTTTCCA
* * **
4132685 CTATTTTTCAGATTTTACAACTTAGC-
1 CTATTTTTTAGATTTTACAATTTTCCA
*
4132711 CT-TATTTTTATATTTTA-AATTTTGCCCA
1 CTAT-TTTTTAGATTTTACAATTTT--CCA
* * *
4132739 C-ATTTTTCAAATTTTAAAATTTTGCC-
1 CTATTTTTTAGATTTTACAATTTT-CCA
* * *
4132765 CTATTTTTTAGATTTTATAGTTTTGCCC
1 CTATTTTTTAGATTTTACAATTTT-CCA
* *
4132793 CTATTTTTTAAAATTTTACTATTTT
1 CTATTTTTT-AGATTTTACAATTTT
4132818 GTCCCCTGCT
Statistics
Matches: 149, Mismatches: 29, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
25 5 0.03
26 14 0.09
27 62 0.42
28 38 0.26
29 30 0.20
ACGTcount: A:0.25, C:0.15, G:0.05, T:0.56
Consensus pattern (27 bp):
CTATTTTTTAGATTTTACAATTTTCCA
Found at i:4132744 original size:53 final size:55
Alignment explanation
Indices: 4132564--4132810 Score: 187
Period size: 57 Copynumber: 4.5 Consensus size: 55
4132554 TTTAGCCCTT
* * * ** * *
4132564 ATTTTTCCCCTATTTTTCATATTTTATAGTTTAGCCCCTATTTTTCAAATTTTACA
1 ATTTTGCCCCTATTTTTCAAATTTTAAAACTTAG-CCCTATTTTTTAGATTTTACA
* * * * * ** ** *
4132620 ATTTTATCCACTATTTTTTAGATTTTATAGTTTTTCCACTTTTTTTTAGATTTTACA
1 ATTTT-GCCCCTATTTTTCAAATTTTAAAACTTAGCC-CTATTTTTTAGATTTTACA
* * * *
4132677 ATTTT-CCCCTATTTTTCAGATTTTACAACTTAGCCTTA-TTTTTATATTTTA-A
1 ATTTTGCCCCTATTTTTCAAATTTTAAAACTTAGCCCTATTTTTTAGATTTTACA
* * *
4132729 ATTTTGCCCAC-ATTTTTCAAATTTTAAAATTTTGCCCTATTTTTTAGATTTTATA
1 ATTTTGCCC-CTATTTTTCAAATTTTAAAACTTAGCCCTATTTTTTAGATTTTACA
* *
4132784 GTTTTGCCCCTATTTTTTAAAATTTTA
1 ATTTTGCCCCTA-TTTTTCAAATTTTA
4132811 CTATTTTGTC
Statistics
Matches: 157, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
52 6 0.04
53 38 0.24
54 15 0.10
55 33 0.21
56 20 0.13
57 45 0.29
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.55
Consensus pattern (55 bp):
ATTTTGCCCCTATTTTTCAAATTTTAAAACTTAGCCCTATTTTTTAGATTTTACA
Found at i:4133745 original size:26 final size:26
Alignment explanation
Indices: 4133716--4133767 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4133706 TAGAACCCTG
* *
4133716 TATGTGTGAACCCTATAG-GCAAACCT
1 TATGTGAGAACACTAT-GTGCAAACCT
4133742 TATGTGAGAACACTATGTGCAAACCT
1 TATGTGAGAACACTATGTGCAAACCT
4133768 ATTATGCATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (26 bp):
TATGTGAGAACACTATGTGCAAACCT
Found at i:4137076 original size:50 final size:51
Alignment explanation
Indices: 4136989--4137085 Score: 126
Period size: 50 Copynumber: 1.9 Consensus size: 51
4136979 TAAATTTAGT
* * * *
4136989 CCTCAAATTTTACATATTATATCAATTTAGTCATAATTTTA-AAAATGAAC
1 CCTCAAAATTTACAAATGATATCAATTTAGTCATAATTCTAGAAAATGAAC
*
4137039 CCTCAAAATTTACAAATGATATCAATTT-GATCCTAATTCTAGAAAAT
1 CCTCAAAATTTACAAATGATATCAATTTAG-TCATAATTCTAGAAAAT
4137086 TCAAAGAAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
49 1 0.03
50 34 0.85
51 5 0.12
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.37
Consensus pattern (51 bp):
CCTCAAAATTTACAAATGATATCAATTTAGTCATAATTCTAGAAAATGAAC
Found at i:4137293 original size:24 final size:23
Alignment explanation
Indices: 4137224--4137294 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 23
4137214 TTGTTGACAA
*
4137224 GAAATAATAATATATAAAATTTT
1 GAAATAATAATAAATAAAATTTT
* *
4137247 CAAATATATAA-AAACAAATATTTT
1 GAAATA-ATAATAAATAAA-ATTTT
*
4137271 GAAATAATAATAAATTTAAATTTT
1 GAAATAATAATAAA-TAAAATTTT
4137295 ATATTAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
23 14 0.37
24 22 0.58
25 2 0.05
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (23 bp):
GAAATAATAATAAATAAAATTTT
Found at i:4140897 original size:35 final size:35
Alignment explanation
Indices: 4140851--4140922 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
4140841 TTCACAAAAG
4140851 ATAGTTGACATTTAATACTTCTAAAGACATCATTT
1 ATAGTTGACATTTAATACTTCTAAAGACATCATTT
*
4140886 ATAGTTGACATTTAATACTTCTAAAGACATCGTTT
1 ATAGTTGACATTTAATACTTCTAAAGACATCATTT
4140921 AT
1 AT
4140923 TTAACTCTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (35 bp):
ATAGTTGACATTTAATACTTCTAAAGACATCATTT
Found at i:4157856 original size:17 final size:17
Alignment explanation
Indices: 4157822--4157853 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4157812 TAAATATTAA
4157822 TTAATTAAAATAATTTC
1 TTAATTAAAATAATTTC
4157839 TTAATT-AAATAATTT
1 TTAATTAAAATAATTT
4157854 TCTCAACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAATAATTTC
Found at i:4161366 original size:125 final size:125
Alignment explanation
Indices: 4161143--4161396 Score: 436
Period size: 125 Copynumber: 2.0 Consensus size: 125
4161133 TAAATGGATA
*
4161143 AGATCTTATGGGATTGTATTGTGTTTTGAGATATGATTGTTCAAATGGGCAAACCCTTCTATTTA
1 AGATCTTATGGGATTGTATTGTGTTTTGAGATATGATTATTCAAATGGGCAAACCCTTCTATTTA
* * *
4161208 TAGTACTTTCCTCGCCAAGCAAACATGTTAAGTTGGGCGTTGGCCACATGTCTTCTTGTG
66 TAGTACTTTCCTCGCCAAGCAAACATGTCAAGTTGGGCGCTGGCCACATGTCTTCTAGTG
* * *
4161268 AGATCTTATGTGATTGTATTGTGTTTTGAGATATGATTATTCAAATGGGCAAACCTTTTTATTTA
1 AGATCTTATGGGATTGTATTGTGTTTTGAGATATGATTATTCAAATGGGCAAACCCTTCTATTTA
*
4161333 TAGTACTTTCCTTGCCAAGCAAACATGTCAAGTTGGGCGCTGGCCACATGTCTTCTAGTG
66 TAGTACTTTCCTCGCCAAGCAAACATGTCAAGTTGGGCGCTGGCCACATGTCTTCTAGTG
4161393 AGAT
1 AGAT
4161397 GATGGGAAAT
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
125 121 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (125 bp):
AGATCTTATGGGATTGTATTGTGTTTTGAGATATGATTATTCAAATGGGCAAACCCTTCTATTTA
TAGTACTTTCCTCGCCAAGCAAACATGTCAAGTTGGGCGCTGGCCACATGTCTTCTAGTG
Found at i:4164624 original size:29 final size:30
Alignment explanation
Indices: 4164565--4164626 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
4164555 CTTAAATAAA
* ***
4164565 AAAATTTAAATAATTTAGTGATCATCTTAT
1 AAAATTTAAATAATTGAGTGATCAAAATAT
*
4164595 AAAATTTTAA-AATTGAGTGATCAAAATAT
1 AAAATTTAAATAATTGAGTGATCAAAATAT
4164624 AAA
1 AAA
4164627 CTTATTTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 18 0.67
30 9 0.33
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (30 bp):
AAAATTTAAATAATTGAGTGATCAAAATAT
Found at i:4173896 original size:21 final size:22
Alignment explanation
Indices: 4173870--4173917 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
4173860 GAAATAAAAC
* **
4173870 AAAAAA-GTAAAATCTTCTCTA
1 AAAAAAGGTAAAACCTAATCTA
4173891 AAAAAAGGTAAAACCTAATCTA
1 AAAAAAGGTAAAACCTAATCTA
4173913 AAAAA
1 AAAAA
4173918 TGAAAAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.60, C:0.12, G:0.06, T:0.21
Consensus pattern (22 bp):
AAAAAAGGTAAAACCTAATCTA
Found at i:4175668 original size:24 final size:23
Alignment explanation
Indices: 4175630--4175711 Score: 65
Period size: 24 Copynumber: 3.4 Consensus size: 23
4175620 ACAACCAATT
*
4175630 GGGATGCTCCGAAGAGCTATTAAC
1 GGGAAGCT-CGAAGAGCTATTAAC
* *
4175654 GGGAAGCTCGCAAGAACCATATAAC
1 GGGAAGCTCG-AAGAGCTAT-TAAC
* * *
4175679 GAGAAGCTCGAGAGGGCTAATAAC
1 GGGAAGCTCGA-AGAGCTATTAAC
*
4175703 GGGACGCTC
1 GGGAAGCTC
4175712 TTTCGAGCTG
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
23 2 0.04
24 26 0.58
25 17 0.38
ACGTcount: A:0.33, C:0.22, G:0.30, T:0.15
Consensus pattern (23 bp):
GGGAAGCTCGAAGAGCTATTAAC
Found at i:4179018 original size:29 final size:28
Alignment explanation
Indices: 4178986--4179051 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 28
4178976 ACTTATTAGC
* *
4178986 ATAAAAATAA-TATTCAATTATTTTATC
1 ATAAAAATAAGTATTCAATAATTTTATT
*
4179013 ATATAAAATCAAGTGTTCAATAATTTTATT
1 ATA-AAAAT-AAGTATTCAATAATTTTATT
4179043 ATAAAAATA
1 ATAAAAATA
4179052 TAACATATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
27 3 0.09
28 6 0.18
29 7 0.21
30 17 0.52
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAAAATAAGTATTCAATAATTTTATT
Found at i:4179370 original size:30 final size:31
Alignment explanation
Indices: 4179334--4179399 Score: 100
Period size: 30 Copynumber: 2.2 Consensus size: 31
4179324 AATAGTTTTT
4179334 ATTTTTATAAATTTTAAA-AAATTAAAATA-A
1 ATTTTTATAAATTTTAAAGAAA-TAAAATATA
*
4179364 ATTTTTATTAATTTTAAAGAAATAAAATATA
1 ATTTTTATAAATTTTAAAGAAATAAAATATA
4179395 ATTTT
1 ATTTT
4179400 ATTATTATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 24 0.73
31 9 0.27
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (31 bp):
ATTTTTATAAATTTTAAAGAAATAAAATATA
Found at i:4179408 original size:36 final size:34
Alignment explanation
Indices: 4179330--4179417 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 34
4179320 TTTTAATAGT
*
4179330 TTTTATTTTTATAAATTTTAAAAAATTAAAATAAA
1 TTTTA-TTTTATTAATTTTAAAAAATTAAAATAAA
4179365 ---T-TTTTATTAATTTTAAAGAAA-TAAAATATAA
1 TTTTATTTTATTAATTTTAAA-AAATTAAAATA-AA
4179396 TTTTATTATTATTAA-TTTAAAA
1 TTTTATT-TTATTAATTTTAAAA
4179418 TTTTATAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 15
0.74 0.02 0.25
Matches are distributed among these distances:
30 22 0.49
31 5 0.11
32 1 0.02
34 2 0.04
35 8 0.18
36 7 0.16
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (34 bp):
TTTTATTTTATTAATTTTAAAAAATTAAAATAAA
Found at i:4187136 original size:23 final size:23
Alignment explanation
Indices: 4187101--4187192 Score: 121
Period size: 23 Copynumber: 3.9 Consensus size: 23
4187091 GGACTCACTA
* *
4187101 CAGCTTGAAAGAGCTTACCGTTT
1 CAGCTCGATAGAGCTTACCGTTT
*
4187124 CAGCTCTATAGAGCTTACCGTTT
1 CAGCTCGATAGAGCTTACCGTTT
4187147 CAGCTCGATAGAGCTTACCGTTTAT
1 CAGCTCGATAGAGCTTACCG-TT-T
*
4187172 CAGCTCGAAATGAGCTTACCG
1 CAGCTCGATA-GAGCTTACCG
4187193 ATCATGGCTT
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
23 39 0.64
24 2 0.03
25 10 0.16
26 10 0.16
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (23 bp):
CAGCTCGATAGAGCTTACCGTTT
Found at i:4187390 original size:20 final size:20
Alignment explanation
Indices: 4187352--4187390 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4187342 TATGCATGAA
* *
4187352 TTACCGTTGATATGTATAAG
1 TTACCGTTGATACGAATAAG
*
4187372 TTACGGTTGATACGAATAA
1 TTACCGTTGATACGAATAA
4187391 ATTTCTGTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (20 bp):
TTACCGTTGATACGAATAAG
Found at i:4189171 original size:24 final size:24
Alignment explanation
Indices: 4189081--4189175 Score: 138
Period size: 24 Copynumber: 4.0 Consensus size: 24
4189071 ACAAAGATTT
4189081 TTATACTAATAAATG-TCAAATATA
1 TTATACTAATAAATGCT-AAATATA
* *
4189105 TTATGCTAATAAATGTTAAATATA
1 TTATACTAATAAATGCTAAATATA
*
4189129 TTATGCTAATAAATGCTAAATATA
1 TTATACTAATAAATGCTAAATATA
*
4189153 TTATACTAATAAATACTAAATAT
1 TTATACTAATAAATGCTAAATAT
4189176 TCTAGAAAGA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
24 65 0.98
25 1 0.02
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.39
Consensus pattern (24 bp):
TTATACTAATAAATGCTAAATATA
Found at i:4191224 original size:42 final size:42
Alignment explanation
Indices: 4191127--4191323 Score: 189
Period size: 42 Copynumber: 4.4 Consensus size: 42
4191117 AACAGAAGAG
* **
4191127 CTCTTCAAGAAAGCACCATCTATTTCCCTTAAAACCA-AAAA
1 CTCTTCAAGAAAGGACCATAAATTTCCCTTAAAACCACAAAA
4191168 GCTCTTCAAGAAAGGACCATAAATTTCCCTTAAAACCACAAAA
1 -CTCTTCAAGAAAGGACCATAAATTTCCCTTAAAACCACAAAA
* * *
4191211 CTCTTCAAGAAAGGATCTCAAAACTTTTTATCAAATTCCCTTAAAACCAGAAAT
1 CTCTTCAAGAAAGGA-C-C---A-----TA--AATTTCCCTTAAAACCACAAAA
* * *
4191265 CCCTTCAAGAAAGGACAATCAATTTCCCTTAAAACCACAAAA
1 CTCTTCAAGAAAGGACCATAAATTTCCCTTAAAACCACAAAA
4191307 CTCTTCAAGAAAGGACC
1 CTCTTCAAGAAAGGACC
4191324 TCAAAACTTT
Statistics
Matches: 128, Mismatches: 14, Indels: 26
0.76 0.08 0.15
Matches are distributed among these distances:
42 83 0.65
43 5 0.04
44 2 0.02
47 1 0.01
49 1 0.01
52 2 0.02
53 1 0.01
54 33 0.26
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.23
Consensus pattern (42 bp):
CTCTTCAAGAAAGGACCATAAATTTCCCTTAAAACCACAAAA
Found at i:4191314 original size:96 final size:96
Alignment explanation
Indices: 4191148--4191456 Score: 434
Period size: 96 Copynumber: 3.3 Consensus size: 96
4191138 AGCACCATCT
* *
4191148 ATTTCCCTTAAAACCAAAAAGCTCTTCAAGAAAGGACCATAAATTTCCCTTAAAACCACAAAACT
1 ATTTCCCTTAAAACCAAAAAGCCCTTCAAGAAAGGACCATCAATTTCCCTTAAAACCACAAAACT
*
4191213 CTTCAAGAAAGGATCTCAAAACTTTTTATCA
66 CTTCAAGAAAGGACCTCAAAACTTTTTATCA
* * * *
4191244 AATTCCCTTAAAACCAGAAATCCCTTCAAGAAAGGACAATCAATTTCCCTTAAAACCACAAAACT
1 ATTTCCCTTAAAACCAAAAAGCCCTTCAAGAAAGGACCATCAATTTCCCTTAAAACCACAAAACT
4191309 CTTCAAGAAAGGACCTCAAAACTTTTTATCA
66 CTTCAAGAAAGGACCTCAAAACTTTTTATCA
* * * * * *
4191340 ATTTTCCTTGAAACCAAAAAGCTCTT---G--AGTACCATCAATTTCCATTAAAACTA-AAACAC
1 ATTTCCCTTAAAACCAAAAAGCCCTTCAAGAAAGGACCATCAATTTCCCTTAAAACCACAAA-AC
*
4191399 TCTTCAAGAAATGACCTCAAAACTTTTTATCA
65 TCTTCAAGAAAGGACCTCAAAACTTTTTATCA
4191431 ATTTCCCTTAAAACCAAAAA-CCCTTC
1 ATTTCCCTTAAAACCAAAAAGCCCTTC
4191457 TTGACCTTTT
Statistics
Matches: 190, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
90 7 0.04
91 73 0.38
93 1 0.01
96 109 0.57
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.27
Consensus pattern (96 bp):
ATTTCCCTTAAAACCAAAAAGCCCTTCAAGAAAGGACCATCAATTTCCCTTAAAACCACAAAACT
CTTCAAGAAAGGACCTCAAAACTTTTTATCA
Found at i:4194017 original size:124 final size:124
Alignment explanation
Indices: 4193687--4194053 Score: 502
Period size: 125 Copynumber: 2.9 Consensus size: 124
4193677 TAAGTCCTGG
** * * *
4193687 AAGAAATAATTTTGAGTTGACTTTTCTGATAAAATAATATAAAATCACTTCTAGCAGGATGGTAT
1 AAGAAATAATTTT-TTTTGACATTTCTGAGAAAATAATATAAAATCACTTCTAGCAGGATGCTAT
*
4193752 TTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGATACAGTAGGTCACGA
65 TTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGA
* * * * *
4193812 AAGAAATATTTTTTTTTTGTCATTTCTGAGAAAATAGTATAAAATCTCTTCTAGTAGGATGCTAT
1 AAGAAATA-ATTTTTTTTGACATTTCTGAGAAAATAATATAAAATCACTTCTAGCAGGATGCTAT
* * * * * *
4193877 TTGAGAAGAATTTGTGAAATTGCGGCCTCGT-CAGCGTGCTTTTGCTACAGTAGGTCATGT
65 TTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGA-CGCGCTTTTGCTACAGTAGGTCACGA
* * * *
4193937 AAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAACAGGATGCTATT
1 AAGAAATAATTTTTTTTGACATTTCTGAGAAAATAATATAAAATCACTTCTAGCAGGATGCTATT
*
4194002 TGAGAAGAATTTGTGAAACCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
66 TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
4194054 CATGTTTGCG
Statistics
Matches: 209, Mismatches: 30, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
124 95 0.45
125 110 0.53
126 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.34
Consensus pattern (124 bp):
AAGAAATAATTTTTTTTGACATTTCTGAGAAAATAATATAAAATCACTTCTAGCAGGATGCTATT
TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGA
Found at i:4197307 original size:116 final size:116
Alignment explanation
Indices: 4197103--4197320 Score: 391
Period size: 116 Copynumber: 1.9 Consensus size: 116
4197093 TGATAAATTG
* * *
4197103 TATTACGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATACAATTATTAATTGT
1 TATTAAGTCAAAAAATTATATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
4197168 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
* *
4197219 TATTAAGTCAAAAAATTATATTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTATTTGT
1 TATTAAGTCAAAAAATTATATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
4197284 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTA
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTA
4197321 CGTTAAGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 97 1.00
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.39
Consensus pattern (116 bp):
TATTAAGTCAAAAAATTATATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
Found at i:4197358 original size:23 final size:21
Alignment explanation
Indices: 4197322--4197547 Score: 72
Period size: 23 Copynumber: 10.0 Consensus size: 21
4197312 CTAACATTAC
4197322 GTTAAGGTTAGGGTTTTTAAA
1 GTTAAGGTTAGGGTTTTTAAA
4197343 GTTAAGGGTTTAGGGTTTTTAATTAA
1 GTTAA-GG-TTAGGGTTTTT-A--AA
* *
4197369 ATT-AGGCTAGGGTTTTTAATTAA
1 GTTAAGGTTAGGGTTTTT-A--AA
*
4197392 ATT-AGGTTAGGGTTTTTAATTAA
1 GTTAAGGTTAGGGTTTTT-A--AA
* *
4197415 ATT-AGGCTAGGGTTTTTAATTAA
1 GTTAAGGTTAGGGTTTTT-A--AA
*
4197438 ATT-AGGTTAGGGTTTTTAATTAA
1 GTTAAGGTTAGGGTTTTT-A--AA
* *
4197461 ATT-AGGTTAAGGTTTTTAATTAA
1 GTTAAGGTTAGGGTTTTT-A--AA
* *
4197484 ATT-AGGCTAGGGTTTTTAATTAA
1 GTTAAGGTTAGGGTTTTT-A--AA
*
4197507 ATT-AGGTTAGGGTTTTT-AA
1 GTTAAGGTTAGGGTTTTTAAA
4197526 GTTAAAGGTTTAGGGTTTTTAA
1 GTT-AAGG-TTAGGGTTTTTAA
4197548 TTGAATTAGG
Statistics
Matches: 186, Mismatches: 10, Indels: 16
0.88 0.05 0.08
Matches are distributed among these distances:
19 4 0.02
21 8 0.04
22 13 0.07
23 153 0.82
24 3 0.02
25 1 0.01
26 4 0.02
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.46
Consensus pattern (21 bp):
GTTAAGGTTAGGGTTTTTAAA
Found at i:4197561 original size:23 final size:23
Alignment explanation
Indices: 4197352--4197565 Score: 344
Period size: 23 Copynumber: 9.3 Consensus size: 23
4197342 AGTTAAGGGT
4197352 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
4197375 CTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
4197398 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
4197421 CTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
4197444 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
4197467 TTAAGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
4197490 CTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
4197513 TTAGGGTTTTTAAGTT-AA--AGG
1 TTAGGGTTTTTAA-TTAAATTAGG
*
4197534 TTTAGGGTTTTTAATTGAATTAGG
1 -TTAGGGTTTTTAATTAAATTAGG
4197558 TTAGGGTT
1 TTAGGGTT
4197566 AGGGTTTTTA
Statistics
Matches: 178, Mismatches: 8, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
21 5 0.03
22 15 0.08
23 153 0.86
24 5 0.03
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.46
Consensus pattern (23 bp):
TTAGGGTTTTTAATTAAATTAGG
Found at i:4197568 original size:29 final size:28
Alignment explanation
Indices: 4197535--4197629 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
4197525 AGTTAAAGGT
4197535 TTAGGGTTTTTAATTGAATTAGGTTAGGG
1 TTAGGGTTTTTAATT-AATTAGGTTAGGG
*
4197564 TTAGGGTTTTTAATT-A--A-G---GGT
1 TTAGGGTTTTTAATTAATTAGGTTAGGG
*
4197585 TTAGGG-TTTTAATTAAATTAGGTTAAGG
1 TTAGGGTTTTTAATT-AATTAGGTTAGGG
4197613 TTAGGGTTTTTAATTAA
1 TTAGGGTTTTTAATTAA
4197630 GGGTTTAGGG
Statistics
Matches: 54, Mismatches: 3, Indels: 19
0.71 0.04 0.25
Matches are distributed among these distances:
20 8 0.15
21 8 0.15
22 1 0.02
24 2 0.04
25 2 0.04
27 1 0.02
28 9 0.17
29 23 0.43
ACGTcount: A:0.27, C:0.00, G:0.26, T:0.46
Consensus pattern (28 bp):
TTAGGGTTTTTAATTAATTAGGTTAGGG
Found at i:4197590 original size:21 final size:19
Alignment explanation
Indices: 4197560--4197600 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
4197550 GAATTAGGTT
4197560 AGGGTTAGGGTTTTTAATTA
1 AGGGTTAGGG-TTTTAATTA
4197580 AGGGTTTAGGGTTTTAATTA
1 AGGG-TTAGGGTTTTAATTA
4197600 A
1 A
4197601 ATTAGGTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (19 bp):
AGGGTTAGGGTTTTAATTA
Found at i:4197830 original size:18 final size:18
Alignment explanation
Indices: 4197807--4197841 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4197797 CGGAAAAGGA
*
4197807 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
4197825 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
4197842 AAACACACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:4199750 original size:22 final size:22
Alignment explanation
Indices: 4199725--4199780 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
4199715 AAATATAGAT
4199725 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
4199747 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
4199769 TTGAGAGGAATT
1 TTGAGA-GAATT
4199781 GAGAGGAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 28 0.85
23 5 0.15
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:4199753 original size:51 final size:51
Alignment explanation
Indices: 4199638--4199753 Score: 205
Period size: 51 Copynumber: 2.3 Consensus size: 51
4199628 TATTTTAAAA
* * *
4199638 AAGGAAATTGAGAAGAAATTGAAATTAAATATGGATTTGAGAGAATTTTTG
1 AAGGAAATTGAGAGGAAATTGAAATTAAATATAGATTTGAGAGAATTTTGG
4199689 AAGGAAATTGAGAGGAAATTGAAATTAAATATAGATTTGAGAGAATTTTGG
1 AAGGAAATTGAGAGGAAATTGAAATTAAATATAGATTTGAGAGAATTTTGG
4199740 AAGGAAATTGAGAG
1 AAGGAAATTGAGAG
4199754 AATTTTGGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.28
Consensus pattern (51 bp):
AAGGAAATTGAGAGGAAATTGAAATTAAATATAGATTTGAGAGAATTTTGG
Found at i:4201362 original size:18 final size:17
Alignment explanation
Indices: 4201319--4201364 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
4201309 CCGTTATGTC
4201319 TGCGACCGCGA-C-AAA
1 TGCGACCGCGACCGAAA
*
4201334 CGCGA-CGCGACCGAAAA
1 TGCGACCGCGACCG-AAA
4201351 TGCGACCGCGACCG
1 TGCGACCGCGACCG
4201365 CAATTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 5 0.20
17 7 0.28
18 8 0.32
ACGTcount: A:0.28, C:0.37, G:0.30, T:0.04
Consensus pattern (17 bp):
TGCGACCGCGACCGAAA
Found at i:4201463 original size:44 final size:44
Alignment explanation
Indices: 4201409--4201663 Score: 351
Period size: 44 Copynumber: 5.9 Consensus size: 44
4201399 TCTTTGGTTT
*
4201409 AAAGCAATCTTGCTCCAGTTTTTG-CTATGTATCTATCCTGATTA
1 AAAGCTATCTTGCTCCAGTTTTTGCCT-TGTATCTATCCTGATTA
* *
4201453 AAAGCTATCTTGCTCTA--CTTTGCCTTGTATCTATCCTGATTA
1 AAAGCTATCTTGCTCCAGTTTTTGCCTTGTATCTATCCTGATTA
* *
4201495 AAAGCAATCTTGCTCCAGTTTTTG-CTATGTATCTATCCCGATTA
1 AAAGCTATCTTGCTCCAGTTTTTGCCT-TGTATCTATCCTGATTA
*
4201539 AAAGCTATCTTGCTCCAG--TTTGCCTTGTGTCTATCCTGATTA
1 AAAGCTATCTTGCTCCAGTTTTTGCCTTGTATCTATCCTGATTA
* *
4201581 AAAGCCATCTTGCTCCAGTTTTTGCCTTGTGTCTATCCTGATTA
1 AAAGCTATCTTGCTCCAGTTTTTGCCTTGTATCTATCCTGATTA
* * *
4201625 AAAGTTATCTTGCTCCCGTTTTTGCCATGTATCTATCCT
1 AAAGCTATCTTGCTCCAGTTTTTGCCTTGTATCTATCCT
4201664 CTCGATTTAT
Statistics
Matches: 188, Mismatches: 16, Indels: 14
0.86 0.07 0.06
Matches are distributed among these distances:
42 72 0.38
43 6 0.03
44 110 0.59
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (44 bp):
AAAGCTATCTTGCTCCAGTTTTTGCCTTGTATCTATCCTGATTA
Found at i:4201561 original size:86 final size:86
Alignment explanation
Indices: 4201409--4201663 Score: 395
Period size: 86 Copynumber: 2.9 Consensus size: 86
4201399 TCTTTGGTTT
* *
4201409 AAAGCAATCTTGCTCCAGTTTTTGCTATGTATCTATCCTGATTAAAAGCTATCTTGCTCTACTTT
1 AAAGCAATCTTGCTCCAGTTTTTGCTATGTATCTATCCTGATTAAAAGCTATCTTGCTCCAGTTT
4201474 GCCTTGTATCTATCCTGATTA
66 GCCTTGTATCTATCCTGATTA
*
4201495 AAAGCAATCTTGCTCCAGTTTTTGCTATGTATCTATCCCGATTAAAAGCTATCTTGCTCCAGTTT
1 AAAGCAATCTTGCTCCAGTTTTTGCTATGTATCTATCCTGATTAAAAGCTATCTTGCTCCAGTTT
*
4201560 GCCTTGTGTCTATCCTGATTA
66 GCCTTGTATCTATCCTGATTA
* * * *
4201581 AAAGCCATCTTGCTCCAGTTTTTGCCT-TGTGTCTATCCTGATTAAAAGTTATCTTGCTCCCGTT
1 AAAGCAATCTTGCTCCAGTTTTTG-CTATGTATCTATCCTGATTAAAAGCTATCTTGCTCCAG--
*
4201645 TTTGCCATGTATCTATCCT
63 TTTGCCTTGTATCTATCCT
4201664 CTCGATTTAT
Statistics
Matches: 155, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
86 136 0.88
87 2 0.01
88 17 0.11
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (86 bp):
AAAGCAATCTTGCTCCAGTTTTTGCTATGTATCTATCCTGATTAAAAGCTATCTTGCTCCAGTTT
GCCTTGTATCTATCCTGATTA
Found at i:4201646 original size:130 final size:129
Alignment explanation
Indices: 4201409--4201662 Score: 368
Period size: 130 Copynumber: 2.0 Consensus size: 129
4201399 TCTTTGGTTT
* *
4201409 AAAGCAATCTTGCTCCAGTTTTTGCTATGTATCTATCCTGATTAAAAGCTATCTTGCTCTACTTT
1 AAAGCAATCTTGCTCCAG-TTTTGCTATGTATCTATCCTGATTAAAAGCCATCTTGCTCCACTTT
*
4201474 GCCTTGTATCTATCCTGATTAAAAGCAATCTTGCTCCAGTTTTTGCTATGTATCTATCCCGATTA
65 GCCTTGTATCTATCCTGATTAAAAGCAATCTTGCTCCAGTTTTTGCCATGTATCTATCCCGATTA
* * *
4201539 AAAGCTATCTTGCTCCAG-TTTGCCT-TGTGTCTATCCTGATTAAAAGCCATCTTGCTCCAGTTT
1 AAAGCAATCTTGCTCCAGTTTTG-CTATGTATCTATCCTGATTAAAAGCCATCTTGCTCCA--CT
* ** *
4201602 TTGCCTTGTGTCTATCCTGATTAAAAGTTATCTTGCTCCCGTTTTTGCCATGTATCTATCC
63 TTGCCTTGTATCTATCCTGATTAAAAGCAATCTTGCTCCAGTTTTTGCCATGTATCTATCC
4201663 TCTCGATTTA
Statistics
Matches: 111, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
128 35 0.32
129 2 0.02
130 74 0.67
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (129 bp):
AAAGCAATCTTGCTCCAGTTTTGCTATGTATCTATCCTGATTAAAAGCCATCTTGCTCCACTTTG
CCTTGTATCTATCCTGATTAAAAGCAATCTTGCTCCAGTTTTTGCCATGTATCTATCCCGATTA
Found at i:4214560 original size:7 final size:7
Alignment explanation
Indices: 4214495--4214554 Score: 54
Period size: 7 Copynumber: 8.7 Consensus size: 7
4214485 AAAGTTAAAA
4214495 TATATAT
1 TATATAT
4214502 TATAATAT
1 TAT-ATAT
4214510 TATAATAT
1 TAT-ATAT
*
4214518 TATATCT
1 TATATAT
*
4214525 TA-ATGT
1 TATATAT
*
4214531 T-TA-AG
1 TATATAT
4214536 TATATAT
1 TATATAT
4214543 TATATAT
1 TATATAT
4214550 TATAT
1 TATAT
4214555 TATATAAGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
5 1 0.02
6 7 0.16
7 21 0.48
8 15 0.34
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (7 bp):
TATATAT
Found at i:4215674 original size:40 final size:40
Alignment explanation
Indices: 4215552--4215690 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
4215542 ACTTCGAGTC
* *
4215552 GATGAGACACTGGGTGTCAATTTACTACTTC-AGATTAAT-T
1 GATGAGACACTGGGTGTCAAATTATTACTTCGA-ATT-ATCT
* * * ** * *
4215592 CGATGAGGCATTGGGTG-CCAA-T-TTACTTCGGTTTAACC
1 -GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
4215630 GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
1 GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
* *
4215670 GATGAGGCACTGGGTGCCAAA
1 GATGAGACACTGGGTGTCAAA
4215691 CTGGTGTGTT
Statistics
Matches: 75, Mismatches: 18, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
37 15 0.20
38 11 0.15
39 2 0.03
40 33 0.44
41 14 0.19
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (40 bp):
GATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCT
Found at i:4215732 original size:6 final size:6
Alignment explanation
Indices: 4215721--4215747 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
4215711 CTGTGTATCC
4215721 GTCCGA GTCCGA GTCCGA GTCCGA GTC
1 GTCCGA GTCCGA GTCCGA GTCCGA GTC
4215748 GTATTAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.19
Consensus pattern (6 bp):
GTCCGA
Found at i:4217568 original size:14 final size:15
Alignment explanation
Indices: 4217543--4217572 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
4217533 TTCCTTTTTT
4217543 TTATACTAACTATTA
1 TTATACTAACTATTA
4217558 TTATA-TAACTATTA
1 TTATACTAACTATTA
4217572 T
1 T
4217573 CATTATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATACTAACTATTA
Found at i:4218077 original size:31 final size:32
Alignment explanation
Indices: 4218033--4218094 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
4218023 ATTTATTATG
4218033 TGTGAACAATTTAAGCTCGTGACTAGGAGCAA
1 TGTGAACAATTTAAGCTCGTGACTAGGAGCAA
* * *
4218065 TGTG-ACAGTTTAAGCTTGTGCCTAGGAGCA
1 TGTGAACAATTTAAGCTCGTGACTAGGAGCA
4218095 TTTTTTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (32 bp):
TGTGAACAATTTAAGCTCGTGACTAGGAGCAA
Found at i:4218479 original size:27 final size:28
Alignment explanation
Indices: 4218437--4218495 Score: 102
Period size: 27 Copynumber: 2.1 Consensus size: 28
4218427 ATCGACTTGT
4218437 TCAAGTCGCTTAATATTTGACAACTG-A
1 TCAAGTCGCTTAATATTTGACAACTGAA
*
4218464 TCAAGTCGCTTCATATTTGACAACTGAA
1 TCAAGTCGCTTAATATTTGACAACTGAA
4218492 TCAA
1 TCAA
4218496 CTTAGGTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 25 0.83
28 5 0.17
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (28 bp):
TCAAGTCGCTTAATATTTGACAACTGAA
Found at i:4223876 original size:47 final size:45
Alignment explanation
Indices: 4223825--4223992 Score: 132
Period size: 47 Copynumber: 3.6 Consensus size: 45
4223815 TATTTAATAT
*
4223825 TAATTATTTTAAATTGTATAAATTCATATAAGAAAAATTATTATCAA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTAT-AA
* * **
4223872 TAATT-TTATGAAA-TTATATATT-AT-T-ATTAAATTATATGTAATAA
1 TAATTATT-TTAAATTTATAAATTCATATAAGAAAATT-TAT-T-ATAA
* * *
4223916 TAATTATTTTAAATTATACAAATTCATATAAGATAATTTATTAGTTA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA-TAA
4223963 TAATTATTTTAAATTTTATTAAA-TCATATA
1 TAATTATTTTAAA-TTTA-TAAATTCATATA
4223993 TTTTAATTAA
Statistics
Matches: 95, Mismatches: 13, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 14 0.15
45 12 0.13
46 10 0.11
47 36 0.38
48 9 0.09
49 5 0.05
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTTATAAATTCATATAAGAAAATTTATTATAA
Found at i:4223898 original size:91 final size:91
Alignment explanation
Indices: 4223751--4223958 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
4223741 TTGATTTTAG
* *
4223751 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
4223816 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* * *
4223843 TAAATTCATATAAGAAAAATTATTATCAATAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
4223908 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
4223934 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
4223959 GTTATAATTA
Statistics
Matches: 105, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 89 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:4223919 original size:44 final size:43
Alignment explanation
Indices: 4223772--4223933 Score: 116
Period size: 44 Copynumber: 3.6 Consensus size: 43
4223762 AAGAACATTT
* * *
4223772 TATTATTAAGAATT-TTATGAAATTATATATCATTATTAAATTA
1 TATTAATAATAATTATT-TGAAATTATATATAATTATTAAATTA
* * * *
4223815 TATTTAATATTAATTATTTTAAATTGTATA-AATTCATATAAGA-AA
1 TA-TTAATAATAATTATTTGAAATTATATATAATT-AT-TAA-ATTA
* *
4223860 AATTATTATCAATAATT-TTATGAAATTATATATTATTATTAAATTA
1 TATTA--AT-AATAATTATT-TGAAATTATATATAATTATTAAATTA
*
4223906 TATGTAATAATAATTATTTTAAATTATA
1 TAT-TAATAATAATTATTTGAAATTATA
4223934 CAAATTCATA
Statistics
Matches: 91, Mismatches: 15, Indels: 25
0.69 0.11 0.19
Matches are distributed among these distances:
43 5 0.05
44 40 0.44
45 12 0.13
46 11 0.12
47 20 0.22
48 3 0.03
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (43 bp):
TATTAATAATAATTATTTGAAATTATATATAATTATTAAATTA
Found at i:4223933 original size:26 final size:28
Alignment explanation
Indices: 4223771--4223847 Score: 52
Period size: 28 Copynumber: 2.8 Consensus size: 28
4223761 TAAGAACATT
* *
4223771 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATAATATA
* ** *
4223801 TCATTATTAAATTATATTTAATATTA-A
1 TTATTATTAAATTATATGAAATAATATA
*
4223828 TTATT-TTAAATTGTAT-AAAT
1 TTATTATTAAATTATATGAAAT
4223848 TCATATAAGA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
25 3 0.08
26 10 0.26
27 5 0.13
28 12 0.32
29 1 0.03
30 7 0.18
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATAATATA
Found at i:4224393 original size:16 final size:16
Alignment explanation
Indices: 4224372--4224441 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
4224362 TTGATTTGCT
*
4224372 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
4224388 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
4224404 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
4224420 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
4224436 AATACA
1 ATTACA
4224442 GCGAAAAAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.33, C:0.36, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:4236895 original size:123 final size:123
Alignment explanation
Indices: 4236676--4236925 Score: 491
Period size: 123 Copynumber: 2.0 Consensus size: 123
4236666 GCAAAAAGAA
*
4236676 TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCCTAATCTGTACAATATTAGTTTCGATC
1 TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCCTAATCTGCACAATATTAGTTTCGATC
4236741 AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
66 AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
4236799 TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCCTAATCTGCACAATATTAGTTTCGATC
1 TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCCTAATCTGCACAATATTAGTTTCGATC
4236864 AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
66 AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
4236922 TTAG
1 TTAG
4236926 TGTATTAACA
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 126 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (123 bp):
TTAGCATATTGATTGAACGGGAATATAGTTTCCCATTCCTAATCTGCACAATATTAGTTTCGATC
AAATCATACATTGCAGCATACAAGGCCCTTGTAATTCTCTAGTACCTTGCTTGGTTAT
Found at i:4239922 original size:19 final size:19
Alignment explanation
Indices: 4239875--4239925 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
4239865 TATGGATGTT
*
4239875 TTTAATAATTTTTAGTAAG
1 TTTAATAATTTTTAGTAAA
*
4239894 TTCAAT-ATTTTTA-TAAA
1 TTTAATAATTTTTAGTAAA
4239911 TCTTAATAATTTTTA
1 T-TTAATAATTTTTA
4239926 AATAATTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 4 0.15
18 11 0.41
19 12 0.44
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (19 bp):
TTTAATAATTTTTAGTAAA
Found at i:4243980 original size:27 final size:27
Alignment explanation
Indices: 4243927--4243982 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
4243917 ATCTACATAC
*
4243927 ACCATTAAAAAAACTATTGAGGCATCA
1 ACCATTAAAAAAACTAGTGAGGCATCA
4243954 ACCATTCAAAAAAAC-AGTGATGG-ATCA
1 ACCATT-AAAAAAACTAGTGA-GGCATCA
4243981 AC
1 AC
4243983 TTTAAAAGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 16 0.62
28 10 0.38
ACGTcount: A:0.48, C:0.20, G:0.12, T:0.20
Consensus pattern (27 bp):
ACCATTAAAAAAACTAGTGAGGCATCA
Found at i:4253380 original size:22 final size:21
Alignment explanation
Indices: 4253342--4253384 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
4253332 TAATTTAAAT
*
4253342 AAATTATTACATTTAAAATTA
1 AAATTATTAAATTTAAAATTA
4253363 AAATTATTATAATTTAAAATTA
1 AAATTATTA-AATTTAAAATTA
4253385 TTTAAATCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATTATTAAATTTAAAATTA
Found at i:4265416 original size:11 final size:11
Alignment explanation
Indices: 4265400--4265426 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
4265390 TAGAAATTAG
4265400 TTTGTGAAACT
1 TTTGTGAAACT
4265411 TTTGTGAAACT
1 TTTGTGAAACT
4265422 TTTGT
1 TTTGT
4265427 ATTTATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:4266963 original size:92 final size:92
Alignment explanation
Indices: 4266827--4267020 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
4266817 TTGATTTTAG
* *
4266827 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
4266891 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
4266918 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
4266983 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
4267011 CAAATTCATA
1 TAAATTCATA
4267021 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:4267068 original size:48 final size:52
Alignment explanation
Indices: 4266998--4267096 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
4266988 AATAATTATT
4266998 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
4267046 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
4267097 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:4267078 original size:17 final size:17
Alignment explanation
Indices: 4267053--4267086 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
4267043 ATAATTTTAA
*
4267053 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
4267070 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
4267087 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:4267103 original size:17 final size:16
Alignment explanation
Indices: 4267058--4267105 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
4267048 TTTAAATTTT
4267058 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
4267075 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
4267089 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
4267106 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:4267193 original size:16 final size:17
Alignment explanation
Indices: 4267155--4267194 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
4267145 AATTTTATTA
4267155 AATAA-TATATTTTAAT
1 AATAATTATATTTTAAT
*
4267171 TAT-ATTATA-TTTAAT
1 AATAATTATATTTTAAT
4267186 AATAATTAT
1 AATAATTAT
4267195 GTTATTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATAATTATATTTTAAT
Found at i:4267305 original size:16 final size:17
Alignment explanation
Indices: 4267271--4267312 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
4267261 ATTATTAAGA
4267271 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
4267288 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAATATAT
4267304 ATTTATAAT
1 ATTT-TAAT
4267313 AATTATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 9 0.39
18 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Found at i:4267377 original size:77 final size:77
Alignment explanation
Indices: 4267290--4267528 Score: 178
Period size: 77 Copynumber: 3.2 Consensus size: 77
4267280 AATTATATAT
*
4267290 TTTAATTAAAATATATTTATAATAATTATATTTAAATATGATTAAATTATTTATTATTGATATTA
1 TTTAAATAAAATATATTTATAATAATTATATTTAAATATGATTAAATTATTTATTATTGATATTA
4267355 ATCTTATTAAAA
66 ATCTTATTAAAA
* * * * * * ** *
4267367 TTTAAATAAAATA-ATTTACCAA-AA-CA-AATT---TCTG-CT-AATTATTAAGAATT-TTATT
1 TTTAAATAAAATATATTTA-TAATAATTATATTTAAATATGATTAAATTATTTATTATTGATATT
* * *
4267422 AA-ATTA-TATAT
65 AATCTTATTAAAA
* * * *
4267433 TTTAATTAAAATATATTAAATAATAATTATGTTTAAATATGATTAAATTATTTATTTTTGATAAT
1 TTTAAATAAAATATATT-TATAATAATTATATTTAAATATGATTAAATTATTTATTATTGAT-AT
4267498 AAATAATCTTATTAAAA
64 ---TAATCTTATTAAAA
4267515 TTTAAATAACAATA
1 TTTAAATAA-AATA
4267529 ACAATAATCA
Statistics
Matches: 113, Mismatches: 30, Indels: 32
0.65 0.17 0.18
Matches are distributed among these distances:
66 15 0.13
67 8 0.07
68 9 0.08
69 12 0.11
70 3 0.03
71 3 0.03
73 3 0.03
74 4 0.04
75 11 0.10
76 8 0.07
77 16 0.14
80 3 0.03
81 3 0.03
82 11 0.10
83 4 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (77 bp):
TTTAAATAAAATATATTTATAATAATTATATTTAAATATGATTAAATTATTTATTATTGATATTA
ATCTTATTAAAA
Found at i:4267417 original size:143 final size:147
Alignment explanation
Indices: 4267259--4267529 Score: 469
Period size: 143 Copynumber: 1.9 Consensus size: 147
4267249 ATAAGAATAT
*
4267259 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATT-TATAATAATTATATTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATATTT
4267323 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
4267385 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
*
4267402 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATATTT
*
4267467 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
4267530 CAATAATCAT
Statistics
Matches: 119, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
143 48 0.40
144 41 0.34
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATATTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:4267442 original size:18 final size:17
Alignment explanation
Indices: 4267414--4267448 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
4267404 ATTATTAAGA
*
4267414 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
4267431 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
4267449 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:4267699 original size:45 final size:44
Alignment explanation
Indices: 4267610--4267704 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
4267600 TTACACCTCT
* *
4267610 ATTACATTCAACCAAACACAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAGATTTACTATTACACCTCTATTCC
** *
4267654 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACA-CAGATTTACTATTACACCTCTATTCC
4267699 ATTACA
1 ATTACA
4267705 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGATTTACTATTACACCTCTATTCC
Found at i:4267704 original size:16 final size:16
Alignment explanation
Indices: 4267683--4267715 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4267673 TTGATTTGCT
*
4267683 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
4267699 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
4267715 A
1 A
4267716 ACCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:4271995 original size:13 final size:13
Alignment explanation
Indices: 4271977--4272002 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4271967 GTTTAACCAG
4271977 TTCAAAACACAAT
1 TTCAAAACACAAT
4271990 TTCAAAACACAAT
1 TTCAAAACACAAT
4272003 CAAACATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (13 bp):
TTCAAAACACAAT
Found at i:4272090 original size:13 final size:13
Alignment explanation
Indices: 4272072--4272112 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
4272062 TTGGTACCAC
4272072 AATTATATCATCA
1 AATTATATCATCA
*
4272085 AATTATATTATCA
1 AATTATATCATCA
4272098 AA--ATATCATTCA
1 AATTATATCA-TCA
4272110 AAT
1 AAT
4272113 CCAAATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 5 0.21
12 5 0.21
13 14 0.58
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
AATTATATCATCA
Found at i:4272993 original size:2 final size:2
Alignment explanation
Indices: 4272986--4273015 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4272976 ATCATATTTG
4272986 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
4273016 TATCAATTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:4279044 original size:10 final size:10
Alignment explanation
Indices: 4279007--4279057 Score: 57
Period size: 10 Copynumber: 4.8 Consensus size: 10
4278997 AGCAATTTAA
4279007 TTTTTTTCTT
1 TTTTTTTCTT
* *
4279017 TTATGTTCTT
1 TTTTTTTCTT
4279027 TTAATTTTTCTT
1 TT--TTTTTCTT
4279039 TTTTTTTCTT
1 TTTTTTTCTT
4279049 TCTTTTTTC
1 T-TTTTTTC
4279058 ATTCTCTTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
10 19 0.56
11 7 0.21
12 8 0.24
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:4279056 original size:22 final size:21
Alignment explanation
Indices: 4279007--4279057 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
4278997 AGCAATTTAA
4279007 TTTTTTTCTTTTATGTTCTTT
1 TTTTTTTCTTTTATGTTCTTT
* * *
4279028 TAATTTTTCTTTTTTTTTCTTT
1 T-TTTTTTCTTTTATGTTCTTT
*
4279050 CTTTTTTC
1 TTTTTTTC
4279058 ATTCTCTTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (21 bp):
TTTTTTTCTTTTATGTTCTTT
Found at i:4284921 original size:33 final size:31
Alignment explanation
Indices: 4284869--4284948 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 31
4284859 CAATTGTTAG
* **
4284869 TATTTTTTAAAA-TAGTTTAATGTTATTATAAT
1 TATTTTTTAAAATTTGTTTAACATT-TT-TAAT
*
4284901 TATTTTTTAAAATTTTTTTAACATTTTTAAT
1 TATTTTTTAAAATTTGTTTAACATTTTTAAT
4284932 TATGTTTTTAACAATTT
1 TAT-TTTTTAA-AATTT
4284949 ATAATTTGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
31 7 0.17
32 21 0.51
33 13 0.32
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.60
Consensus pattern (31 bp):
TATTTTTTAAAATTTGTTTAACATTTTTAAT
Found at i:4284939 original size:21 final size:21
Alignment explanation
Indices: 4284915--4284958 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4284905 TTTTAAAATT
*
4284915 TTTTTAAC-ATTTTTAATTATG
1 TTTTTAACAATTTATAATT-TG
4284936 TTTTTAACAATTTATAATTTG
1 TTTTTAACAATTTATAATTTG
4284957 TT
1 TT
4284959 GGTAGTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (21 bp):
TTTTTAACAATTTATAATTTG
Found at i:4296607 original size:16 final size:17
Alignment explanation
Indices: 4296568--4296614 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
4296558 CTTTATATTT
4296568 TATTTTGATAATTTTTA
1 TATTTTGATAATTTTTA
*
4296585 -ATTTTTG-TACTTTTTA
1 TA-TTTTGATAATTTTTA
4296601 TATTTTGA-AATTTT
1 TATTTTGATAATTTT
4296615 ATTATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (17 bp):
TATTTTGATAATTTTTA
Found at i:4296623 original size:17 final size:18
Alignment explanation
Indices: 4296598--4296632 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
4296588 TTTGTACTTT
*
4296598 TTATATTTTGAAATTTTA
1 TTATATTTTAAAATTTTA
4296616 TTAT-TTTTAAAATTTTA
1 TTATATTTTAAAATTTTA
4296633 CATCTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
TTATATTTTAAAATTTTA
Found at i:4302674 original size:52 final size:52
Alignment explanation
Indices: 4302595--4302698 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
4302585 TTAATAGATA
*
4302595 GCCAATGAGCTCTGGATAGCCATGGATAACATAAGTTCTGAAAATATTTTGT
1 GCCAATGAGCTCTGGATAGCCACGGATAACATAAGTTCTGAAAATATTTTGT
4302647 GCCAATGAGCTCTGGATAGCCACGGATAACATAAGTTCTGAAAATATTTTGT
1 GCCAATGAGCTCTGGATAGCCACGGATAACATAAGTTCTGAAAATATTTTGT
4302699 TGTAGCTGTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (52 bp):
GCCAATGAGCTCTGGATAGCCACGGATAACATAAGTTCTGAAAATATTTTGT
Found at i:4326206 original size:98 final size:101
Alignment explanation
Indices: 4326070--4326318 Score: 273
Period size: 101 Copynumber: 2.5 Consensus size: 101
4326060 ACAACCAAGG
* * * * * *
4326070 TGGTAGAGCCATTCTTTATAGCTCCACCAAAATAAAATATCATTTTTAAAATGTTTAGATTAAAA
1 TGGTAGCGCCATTCTATATGGCTCCACCAAAATAAAATATTATTTTTAAAAT-ATTAAATTAAAA
4326135 A-ACCA-ACACATTAAAA-A-A-A-ACCAT-ACAATACAC
65 ATA--ATACACATTAAAATATATATA-CATAACAATACAC
* *
4326168 TGGTGGCGCCATTCTATATGGCTCCACCAAAAAAAAATATTA-TTTTAAAATATTAAATTAAAAA
1 TGGTAGCGCCATTCTATATGGCTCCACCAAAATAAAATATTATTTTTAAAATATTAAATTAAAAA
** * * *
4326232 TAATACATTTTAAAATATATATATATACACAATATAT
66 TAATACACATTAAAATATATATACATA-ACAATACAC
4326269 TGGTAGCGCCATTCTATATGGCTCCACC-AAATAAAATATTATTTTTAAAA
1 TGGTAGCGCCATTCTATATGGCTCCACCAAAATAAAATATTATTTTTAAAA
4326319 AAATTTAAAT
Statistics
Matches: 127, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
95 1 0.01
96 20 0.16
97 11 0.09
98 37 0.29
99 3 0.02
100 13 0.10
101 42 0.33
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (101 bp):
TGGTAGCGCCATTCTATATGGCTCCACCAAAATAAAATATTATTTTTAAAATATTAAATTAAAAA
TAATACACATTAAAATATATATACATAACAATACAC
Found at i:4327202 original size:19 final size:19
Alignment explanation
Indices: 4327149--4327206 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 19
4327139 TCTTGATATG
*
4327149 TAATTTTTTTTAAAATT-A
1 TAATTTTTTTTAAATTTAA
* *
4327167 TGATTTTTTATT--TTTTAA
1 TAATTTTTT-TTAAATTTAA
4327185 TAATTTTTTTTAAATTTAA
1 TAATTTTTTTTAAATTTAA
4327204 TAA
1 TAA
4327207 AACATACACA
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
17 4 0.13
18 17 0.55
19 10 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TAATTTTTTTTAAATTTAA
Found at i:4327604 original size:27 final size:28
Alignment explanation
Indices: 4327556--4327623 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
4327546 ACCAAAAACA
*
4327556 GGGCCGATTTTTTTCAAAATTTATCGAAAT
1 GGGCCGATTTTTTT--AAATTTACCGAAAT
* *
4327586 GGGCCGATTTTTTT-TATTTACCGGAAT
1 GGGCCGATTTTTTTAAATTTACCGAAAT
*
4327613 GGTCC-ATTTTT
1 GGGCCGATTTTT
4327624 CAGGAAATCG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
26 6 0.18
27 14 0.41
30 14 0.41
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44
Consensus pattern (28 bp):
GGGCCGATTTTTTTAAATTTACCGAAAT
Found at i:4327911 original size:30 final size:30
Alignment explanation
Indices: 4327870--4328051 Score: 278
Period size: 30 Copynumber: 6.1 Consensus size: 30
4327860 AGTATAAAAT
*
4327870 ATTAAGTTAGGGTTTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
*
4327900 ATTAGGTTAGGGTTTAAGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4327930 ATTAGGTTATGATTTAGGG-TTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4327959 ATTAGGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4327988 ATTAGGTTAGGGTTTACGATTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
* *
4328018 ATTAGGTTAGGGTTTACGATTTTTAATTAA
1 ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
4328048 ATTA
1 ATTA
4328052 AGATTTTTAT
Statistics
Matches: 141, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
28 6 0.04
29 42 0.30
30 93 0.66
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.47
Consensus pattern (30 bp):
ATTAGGTTAGGGTTTAGGGTTTTTAATTAA
Found at i:4327959 original size:59 final size:59
Alignment explanation
Indices: 4327870--4328051 Score: 258
Period size: 59 Copynumber: 3.1 Consensus size: 59
4327860 AGTATAAAAT
* *
4327870 ATTAAGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAAGGTTTTTAATTAA
1 ATTAGGTTAGGATTTAGGG-TTTTAATTAAATTAGGTTAGGGTTTAAGGTTTTTAATTAA
* *
4327930 ATTAGGTTATGATTTAGGGTTTTAATTAAATTAGGTTAGGG-TTAGGGTTTTTAATTAA
1 ATTAGGTTAGGATTTAGGGTTTTAATTAAATTAGGTTAGGGTTTAAGGTTTTTAATTAA
* ** * *
4327988 ATTAGGTTAGGGTTTACGATTTTTAATTAAATTAGGTTAGGGTTTACGATTTTTAATTAA
1 ATTAGGTTAGGATTTA-GGGTTTTAATTAAATTAGGTTAGGGTTTAAGGTTTTTAATTAA
4328048 ATTA
1 ATTA
4328052 AGATTTTTAT
Statistics
Matches: 110, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
58 30 0.27
59 45 0.41
60 35 0.32
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.47
Consensus pattern (59 bp):
ATTAGGTTAGGATTTAGGGTTTTAATTAAATTAGGTTAGGGTTTAAGGTTTTTAATTAA
Found at i:4327984 original size:88 final size:90
Alignment explanation
Indices: 4327870--4328053 Score: 291
Period size: 88 Copynumber: 2.1 Consensus size: 90
4327860 AGTATAAAAT
*
4327870 ATTAAGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAAGGTTTTTAATTAAATTAG
1 ATTAAGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAAGATTTTTAATTAAATTAG
* *
4327935 GTTATGATTTA-GGGTTTTAATTAA
66 GTTAGGATTTACGAGTTTTAATTAA
* *
4327959 ATTAGGTTAGGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTACGATTTTTAATTAAATTAG
1 ATTAAGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAAGATTTTTAATTAAATTAG
* *
4328023 GTTAGGGTTTACGATTTTTAATTAA
66 GTTAGGATTTACGAGTTTTAATTAA
4328048 ATTAAG
1 ATTAAG
4328054 ATTTTTATTA
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
88 59 0.69
89 27 0.31
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.46
Consensus pattern (90 bp):
ATTAAGTTAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAAGATTTTTAATTAAATTAG
GTTAGGATTTACGAGTTTTAATTAA
Found at i:4330276 original size:25 final size:25
Alignment explanation
Indices: 4330226--4330281 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
4330216 CTTTTATAAC
*
4330226 AAATAATAAATTAATAATTATCTAA
1 AAATAATAAATTAATAAATATCTAA
*
4330251 AAATACATAAA-TAA-AAATATCT-T
1 AAATA-ATAAATTAATAAATATCTAA
4330274 AAATAATA
1 AAATAATA
4330282 TTTAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 3 0.11
23 5 0.18
24 7 0.25
25 8 0.29
26 5 0.18
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (25 bp):
AAATAATAAATTAATAAATATCTAA
Found at i:4330424 original size:30 final size:31
Alignment explanation
Indices: 4330372--4330441 Score: 117
Period size: 30 Copynumber: 2.3 Consensus size: 31
4330362 GCCATTGATG
*
4330372 AAAATATAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAAATTAAAATTATTTTAAA
4330403 AAAATATAAAAAAAATT-AAATTATTTTAAA
1 AAAATATAAAAAAAATTAAAATTATTTTAAA
4330433 AAAAT-TAAA
1 AAAATATAAA
4330442 TTGAGGGGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
29 4 0.11
30 18 0.47
31 16 0.42
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (31 bp):
AAAATATAAAAAAAATTAAAATTATTTTAAA
Found at i:4330496 original size:22 final size:21
Alignment explanation
Indices: 4330471--4330521 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 21
4330461 TAATATGGAT
4330471 TTGAGAGATTTTTGAAAGGAAA
1 TTGAGAGA-TTTTGAAAGGAAA
*
4330493 TTGAGAGGATTTTGGAAGGAAA
1 TTGAGA-GATTTTGAAAGGAAA
4330515 TTGAGAG
1 TTGAGAG
4330522 TTTGAGAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 24 0.89
23 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.29
Consensus pattern (21 bp):
TTGAGAGATTTTGAAAGGAAA
Found at i:4330528 original size:30 final size:30
Alignment explanation
Indices: 4330493--4330580 Score: 158
Period size: 30 Copynumber: 2.9 Consensus size: 30
4330483 TGAAAGGAAA
*
4330493 TTGAGAGGATTTTGGAAGGAAATTGAGAGT
1 TTGAGAGAATTTTGGAAGGAAATTGAGAGT
4330523 TTGAGAGAATTTTGGAAGGAAATTGAGAGT
1 TTGAGAGAATTTTGGAAGGAAATTGAGAGT
*
4330553 TTGAGAGAATTTTGGAAGAAAATTGAGA
1 TTGAGAGAATTTTGGAAGGAAATTGAGA
4330581 TAGGATTTGT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.38, C:0.00, G:0.33, T:0.30
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAAATTGAGAGT
Found at i:4335860 original size:29 final size:30
Alignment explanation
Indices: 4335808--4335865 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
4335798 AACTTTTATA
*
4335808 AAAATGCTCAAATAAAGATGAAA-CTTTTC
1 AAAATGATCAAATAAAGATGAAACCTTTTC
*
4335837 AAAATGATCAAATAAGAGCT-AAACCTTTT
1 AAAATGATCAAATAA-AGATGAAACCTTTT
4335866 TTAAAGTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (30 bp):
AAAATGATCAAATAAAGATGAAACCTTTTC
Found at i:4343672 original size:12 final size:12
Alignment explanation
Indices: 4343655--4343680 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
4343645 ATTAGTAATA
4343655 AAAAATTATGTT
1 AAAAATTATGTT
4343667 AAAAATTATGTT
1 AAAAATTATGTT
4343679 AA
1 AA
4343681 GAATAAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (12 bp):
AAAAATTATGTT
Found at i:4348110 original size:14 final size:15
Alignment explanation
Indices: 4348091--4348119 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4348081 CTAACTAAGC
4348091 CTTAATCATC-TTAA
1 CTTAATCATCATTAA
4348105 CTTAATCATCATTAA
1 CTTAATCATCATTAA
4348120 GCAATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (15 bp):
CTTAATCATCATTAA
Found at i:4348861 original size:21 final size:21
Alignment explanation
Indices: 4348814--4348865 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
4348804 TTGGTTAACT
* *
4348814 GGAATGGAATGTAATAGAGTT
1 GGAATGGAATGTAATACAGTG
* * *
4348835 GTAATGGAATGTTATACTGTG
1 GGAATGGAATGTAATACAGTG
4348856 GGAATGGAAT
1 GGAATGGAAT
4348866 AGAGCTGAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.02, G:0.33, T:0.31
Consensus pattern (21 bp):
GGAATGGAATGTAATACAGTG
Found at i:4349140 original size:24 final size:25
Alignment explanation
Indices: 4349111--4349166 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
4349101 CGTGTCATGT
*
4349111 TATTATTCAAC-GATGGTGCATGAAA
1 TATTATTC-ACTGATGGTGCATCAAA
*
4349136 T-TTATGCACTGATGGTGCATCAAA
1 TATTATTCACTGATGGTGCATCAAA
4349160 TATTATT
1 TATTATT
4349167 ATTTATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 2 0.08
24 19 0.73
25 5 0.19
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (25 bp):
TATTATTCACTGATGGTGCATCAAA
Found at i:4349186 original size:12 final size:12
Alignment explanation
Indices: 4349158--4349211 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
4349148 TGGTGCATCA
*
4349158 AATATTATTATT
1 AATATTATTAAT
*
4349170 TATATTATTAAT
1 AATATTATTAAT
4349182 AATATT-TTAAT
1 AATATTATTAAT
*
4349193 AAAATT-TTAAAT
1 AATATTATT-AAT
4349205 AA-ATTAT
1 AATATTAT
4349212 ATTTATGAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
11 15 0.42
12 21 0.58
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
AATATTATTAAT
Found at i:4352499 original size:29 final size:28
Alignment explanation
Indices: 4352462--4352537 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 28
4352452 GGTTCACACA
*
4352462 TAGGCTCGCATGTAGGCT-TGCATGTACC
1 TAGGTTCGCATGTAGGCTCT-CATGTACC
* *
4352490 TATGGTTCGCATGTAGACTCTCATGTTCC
1 TA-GGTTCGCATGTAGGCTCTCATGTACC
* *
4352519 TAGGTTCACATATAGGCTC
1 TAGGTTCGCATGTAGGCTC
4352538 ACATAATTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 16 0.40
29 23 0.57
30 1 0.03
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (28 bp):
TAGGTTCGCATGTAGGCTCTCATGTACC
Found at i:4353204 original size:13 final size:12
Alignment explanation
Indices: 4353181--4353219 Score: 55
Period size: 13 Copynumber: 3.3 Consensus size: 12
4353171 GGAAAGGAGA
4353181 TTGAAGATATTT
1 TTGAAGATATTT
4353193 TTGAAGGATATTT
1 TTGAA-GATATTT
4353206 TTGAA-A-ATTT
1 TTGAAGATATTT
4353216 TTGA
1 TTGA
4353220 CTCTTTTGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.31
11 1 0.04
12 5 0.19
13 12 0.46
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (12 bp):
TTGAAGATATTT
Found at i:4361520 original size:21 final size:21
Alignment explanation
Indices: 4361475--4361521 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
4361465 TTTATTTTCG
*
4361475 ATAT-GTATATTGATTCATCT
1 ATATAGTATATTGATTCATAT
*
4361495 ATATAGTATATTGTTTACATATT
1 ATATAGTATATTGATT-CATA-T
4361518 ATAT
1 ATAT
4361522 TTATTTTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 10 0.45
22 3 0.14
23 5 0.23
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (21 bp):
ATATAGTATATTGATTCATAT
Found at i:4361908 original size:62 final size:62
Alignment explanation
Indices: 4361806--4361928 Score: 219
Period size: 62 Copynumber: 2.0 Consensus size: 62
4361796 CGCTCTACTG
4361806 TTGAGCTATTGAAGAACAACGGGAGATTAGATCTCATAGAGTTCAACTCTCGTTCTCCACCT
1 TTGAGCTATTGAAGAACAACGGGAGATTAGATCTCATAGAGTTCAACTCTCGTTCTCCACCT
* * *
4361868 TTGATCTATTGAAGAACAACGGGGGATTAGATCTCATAGAGTTCAATTCTCGTTCTCCACC
1 TTGAGCTATTGAAGAACAACGGGAGATTAGATCTCATAGAGTTCAACTCTCGTTCTCCACC
4361929 CATGACTAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (62 bp):
TTGAGCTATTGAAGAACAACGGGAGATTAGATCTCATAGAGTTCAACTCTCGTTCTCCACCT
Found at i:4362391 original size:11 final size:10
Alignment explanation
Indices: 4362367--4362400 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
4362357 TAAACAATGA
4362367 AAATATAT-T
1 AAATATATAT
4362376 AAATATAATAT
1 AAATAT-ATAT
4362387 AAATATATAT
1 AAATATATAT
4362397 AAAT
1 AAAT
4362401 TGCATAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 6 0.26
10 10 0.43
11 7 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAATATATAT
Found at i:4370438 original size:174 final size:174
Alignment explanation
Indices: 4370148--4370500 Score: 618
Period size: 174 Copynumber: 2.0 Consensus size: 174
4370138 TTATTTGCTT
* *
4370148 TTTCATCTTCATCTCCACCATCTACGGAATCAAGACCAGCTGTAGCCCCTTTTACTTCTGTACGC
1 TTTCATCTTCATCTCCACCATCTACGGAATCAAGACCAGCCGTAGCCCCTTTTACTTCTGTACAC
4370213 TCTTGTCCCTGATCAGTATCTCCTTTAACAGGCATCTCAATTACTGTATCAGACTTGAGACTTCT
66 TCTTGTCCCTGATCAGTATCTCCTTTAACAGGCATCTCAATTACTGTATCAGACTTGAGACTTCT
* * *
4370278 TTTTTCCTCGTCCCTTGGAACTTCTGTTTCTCCGGTACCATTGA
131 TTTTTCATCGTCCCTCGAAACTTCTGTTTCTCCGGTACCATTGA
* *
4370322 TTTCATCTTCATCTCCACCATGC-ACTGAATCCAGACCAGCCGTAGCCCCTTTTACTTCTGTACA
1 TTTCATCTTCATCTCCACCAT-CTACGGAATCAAGACCAGCCGTAGCCCCTTTTACTTCTGTACA
*
4370386 CTCTTGTCCCTGATCAGTATCTCCTTTTACAGGCATCTCAATTACTGTATCAGACTTGAGACTTC
65 CTCTTGTCCCTGATCAGTATCTCCTTTAACAGGCATCTCAATTACTGTATCAGACTTGAGACTTC
4370451 TTTTTTCATCGTCCCTCGAAACTTCTGTTTCTCCGGTACCATTGA
130 TTTTTTCATCGTCCCTCGAAACTTCTGTTTCTCCGGTACCATTGA
4370496 TTTCA
1 TTTCA
4370501 AGTACTTCCT
Statistics
Matches: 170, Mismatches: 8, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
174 169 0.99
175 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (174 bp):
TTTCATCTTCATCTCCACCATCTACGGAATCAAGACCAGCCGTAGCCCCTTTTACTTCTGTACAC
TCTTGTCCCTGATCAGTATCTCCTTTAACAGGCATCTCAATTACTGTATCAGACTTGAGACTTCT
TTTTTCATCGTCCCTCGAAACTTCTGTTTCTCCGGTACCATTGA
Found at i:4370795 original size:117 final size:117
Alignment explanation
Indices: 4370642--4370871 Score: 415
Period size: 117 Copynumber: 2.0 Consensus size: 117
4370632 GTTTCTATCA
* * *
4370642 GCAGAAGCAACTGTCTCTTCAACAGATTTCCTTGGCTCAAACAGCCTATCTTTCAGTTCATCAAT
1 GCAGAAGCAACTGTCTCTTCAACAGATTTCCCTGGCTCAAACAGCCCATCTTTCAGCTCATCAAT
4370707 CTCACTATTAAGCTTCATGTCCCTAGCATTCAATAAATCTTTTAGTTCATCT
66 CTCACTATTAAGCTTCATGTCCCTAGCATTCAATAAATCTTTTAGTTCATCT
*
4370759 GCAGAAGCAACTGTCTCTTCAACAGATTTCCCTGGCTCAGACAGCCCATCTTTCAGCTCATCAAT
1 GCAGAAGCAACTGTCTCTTCAACAGATTTCCCTGGCTCAAACAGCCCATCTTTCAGCTCATCAAT
*
4370824 CTCACTATTAAGCTTCATGTCTCTAGCATTCAATAAATCTTTTAGTTC
66 CTCACTATTAAGCTTCATGTCCCTAGCATTCAATAAATCTTTTAGTTC
4370872 TCCATTCATG
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 108 1.00
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (117 bp):
GCAGAAGCAACTGTCTCTTCAACAGATTTCCCTGGCTCAAACAGCCCATCTTTCAGCTCATCAAT
CTCACTATTAAGCTTCATGTCCCTAGCATTCAATAAATCTTTTAGTTCATCT
Found at i:4381176 original size:27 final size:26
Alignment explanation
Indices: 4381138--4381248 Score: 114
Period size: 27 Copynumber: 3.9 Consensus size: 26
4381128 CCAATGAATA
*
4381138 GGGGAATTAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACTTAGCAACCCCT-G
4381165 GGGGAATCAGCACTTAGCAACCACCAATG
1 GGGGAATCAGCACTTAGCAACC-CC--TG
**
4381194 AATCGGGGAATCAGCACACAGCAACCCCTTG
1 ----GGGGAATCAGCACTTAGCAACCCC-TG
4381225 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
4381249 CTTCACATTT
Statistics
Matches: 71, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
27 43 0.61
28 2 0.03
29 1 0.01
30 1 0.01
31 2 0.03
32 2 0.03
33 20 0.28
ACGTcount: A:0.31, C:0.31, G:0.24, T:0.14
Consensus pattern (26 bp):
GGGGAATCAGCACTTAGCAACCCCTG
Found at i:4381177 original size:102 final size:102
Alignment explanation
Indices: 4381001--4381186 Score: 300
Period size: 102 Copynumber: 1.8 Consensus size: 102
4380991 TAACCATTAT
* * * * *
4381001 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
4381066 GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
66 GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
* **
4381103 CGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGGAATTAGCACTTAGCAACCCCTCGGGG
1 CGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
4381168 GAATCAGCACTTAGCAACC
66 GAATCAGCACTTAGCAACC
4381187 ACCAATGAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 76 1.00
ACGTcount: A:0.31, C:0.30, G:0.22, T:0.18
Consensus pattern (102 bp):
CGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
GAATCAGCACTTAGCAACCCCCTTCACATTTCAGATG
Found at i:4381202 original size:60 final size:60
Alignment explanation
Indices: 4381107--4381246 Score: 226
Period size: 60 Copynumber: 2.3 Consensus size: 60
4381097 CAGATGCGGT
* * **
4381107 GGAATCAGCACTTAACAACCACCAATGAATAGGGGAATTAGCACTTAGCAACCCCTCGGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGG
* *
4381167 GGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGG
1 GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGG
4381227 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
4381247 CCCTTCACAT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
60 74 1.00
ACGTcount: A:0.34, C:0.29, G:0.22, T:0.15
Consensus pattern (60 bp):
GGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGG
Found at i:4381279 original size:162 final size:162
Alignment explanation
Indices: 4381012--4381324 Score: 590
Period size: 162 Copynumber: 1.9 Consensus size: 162
4381002 GGTGGATTCC
4381012 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
4381077 TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGG
66 TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGG
**
4381142 AATTAGCACTTAGCAACCCCTCGGGGGAATCA
131 AATTAGCACACAGCAACCCCTCGGGGGAATCA
4381174 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
1 GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
* *
4381239 TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGG
66 TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGG
4381304 AATTAGCACACAGCAACCCCT
131 AATTAGCACACAGCAACCCCT
4381325 TTATATGCAA
Statistics
Matches: 147, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
162 147 1.00
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (162 bp):
GCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGAATCAGCACT
TAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAACAACCACCAATGAATAGGGG
AATTAGCACACAGCAACCCCTCGGGGGAATCA
Found at i:4382417 original size:11 final size:12
Alignment explanation
Indices: 4382389--4382422 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
4382379 GCCCAAACGT
4382389 CGAAATTTTTGAA
1 CGAAATTTTT-AA
4382402 CGAAATTTTT-A
1 CGAAATTTTTAA
4382413 CGAAATTTTT
1 CGAAATTTTT
4382423 TCGTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
13 10 0.48
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (12 bp):
CGAAATTTTTAA
Found at i:4383252 original size:137 final size:138
Alignment explanation
Indices: 4383050--4383391 Score: 391
Period size: 137 Copynumber: 2.5 Consensus size: 138
4383040 ACAACATTTA
* * *
4383050 TGTCATATTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGTAGGATAAAAACCGTAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
* * * * * *** *
4383115 CAGCTTTTATATTAAAGCTCGCAGGATAAATATTGCAGCCTCCAACATAATTAGCAAGAGCAAAA
66 CAGCTATCATACTAAAGATCGCAGGATAAAAACCACAGCCTCCAACAAAATTAGCAAGAGCAAAA
4383180 CTCCCAAT
131 CTCCCAAT
* * * * *
4383188 TGTCATATTAAAGCTCGTAGGATAAAACCCGTA-TCTCTAACACAATTAGCGAGAGCAAAACTCC
1 TGTCATATTAAGGCTCGTAGGATAAAAACCGTAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
* * * * * * *
4383252 CAGCTATCATACTAAGGATTGTAGGATAAAAACCACAGCTTTCAACAAAATTAGCAATAGCAAAG
66 CAGCTATCATACTAAAGATCGCAGGATAAAAACCACAGCCTCCAACAAAATTAGCAAGAGCAAAA
*
4383317 CTCCCAGT
131 CTCCCAAT
* * * **
4383325 TGTCATACTT-AGGCCCGTAAGATAAAAAGCGTAGCCTCCAACACAATTAATGAGAGCAAAGCTC
1 TGTCATA-TTAAGGCTCGTAGGATAAAAACCGTAGCCTCCAACACAATTAGCGAGAGCAAAGCTC
4383389 CCA
65 CCA
4383392 ATTTTCATAC
Statistics
Matches: 167, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
137 108 0.65
138 59 0.35
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (138 bp):
TGTCATATTAAGGCTCGTAGGATAAAAACCGTAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
CAGCTATCATACTAAAGATCGCAGGATAAAAACCACAGCCTCCAACAAAATTAGCAAGAGCAAAA
CTCCCAAT
Found at i:4383418 original size:69 final size:69
Alignment explanation
Indices: 4383050--4383446 Score: 312
Period size: 69 Copynumber: 5.8 Consensus size: 69
4383040 ACAACATTTA
* *
4383050 TGTCATATTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
1 TGTCATACTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
*
4383115 CAGCT
66 CA-AT
* * * ** * ** * * *
4383120 T-TTATATTAAAGCTCGCAGGATAAATATTGCAGCCTCCAACATAATTAGCAAGAGCAAAACTCC
1 TGTCATACTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
4383184 CAAT
66 CAAT
* * * * * * * *
4383188 TGTCATATTAAAGCTCGTAGGATAAAACCCGTA-TCTCTAACACAATTAGCGAGAGCAAAACTCC
1 TGTCATACTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
**
4383252 CAGC
66 CAAT
* * ** * * * * * *
4383256 TATCATACTAAGGATTGTAGGATAAAAACCACAGCTTTCAACAAAATTAGCAATAGCAAAGCTCC
1 TGTCATACTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
*
4383321 CAGT
66 CAAT
* * * * * * **
4383325 TGTCATACTTAGGCCCGTAAGATAAAAAGCGTAGCCTCCAACACAATTAATGAGAGCAAAGCTCC
1 TGTCATACTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
4383390 CAAT
66 CAAT
* * * * * * * *
4383394 TTTCATACTAAGGCTTACAGGATAAAGACCGTAGCCTCTAACATAGTTAGCGA
1 TGTCATACTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAATTAGCGA
4383447 AAGTTGAAAA
Statistics
Matches: 252, Mismatches: 73, Indels: 5
0.76 0.22 0.02
Matches are distributed among these distances:
68 56 0.22
69 195 0.77
70 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (69 bp):
TGTCATACTAAGGCTCATAGGATAAAAACCGCAGCCTCCAACACAATTAGCGAGAGCAAAGCTCC
CAAT
Found at i:4383664 original size:57 final size:57
Alignment explanation
Indices: 4383468--4383670 Score: 250
Period size: 58 Copynumber: 3.5 Consensus size: 57
4383458 TCTCAACTGT
* *
4383468 GTTATCTTTCAAAATTTTCTTAAGTATAAAACGAATCACGGATTCACATCCCTAGCTG
1 GTTATCTTTCAAAATTTTCTTAAATATAAAAC-AATCACGAATTCACATCCCTAGCTG
* * * *
4383526 GTTATCTTTCAAAATTTTCTTAAGTATAAAATAGCTCAC-AGATTCACATCCCTAACTG
1 GTTATCTTTCAAAATTTTCTTAAATATAAAACA-ATCACGA-ATTCACATCCCTAGCTG
* * *
4383584 GTTATCTTTCAAAATTTTCTTAAATATGAAACAATTCGCGAATTCACAT-CCTAGTTG
1 GTTATCTTTCAAAATTTTCTTAAATATAAAACAA-TCACGAATTCACATCCCTAGCTG
*
4383641 ATTATC-TTCTAAAATTTTCTTAAATATAAA
1 GTTATCTTTC-AAAATTTTCTTAAATATAAA
4383671 GTTGCTTGTG
Statistics
Matches: 127, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
56 3 0.02
57 31 0.24
58 92 0.72
59 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (57 bp):
GTTATCTTTCAAAATTTTCTTAAATATAAAACAATCACGAATTCACATCCCTAGCTG
Found at i:4394840 original size:17 final size:18
Alignment explanation
Indices: 4394813--4394846 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
4394803 CACACAATAA
4394813 ACCCAAAATAAGCCCAAC
1 ACCCAAAATAAGCCCAAC
*
4394831 ACCC-AAATAAGTCCAA
1 ACCCAAAATAAGCCCAA
4394847 GAGGAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.35, G:0.06, T:0.09
Consensus pattern (18 bp):
ACCCAAAATAAGCCCAAC
Found at i:4400210 original size:38 final size:39
Alignment explanation
Indices: 4400158--4400240 Score: 123
Period size: 39 Copynumber: 2.2 Consensus size: 39
4400148 ATTTGCCGGC
*
4400158 TTACTGATTAGGCAC-TTATGTGCCGACTACTGTTACTG
1 TTACTGATTAGGCACTTTATGTGCCGAATACTGTTACTG
* * *
4400196 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATTAGGCACTTTATGTGCCGAATACTGTTACTG
4400235 TTACTG
1 TTACTG
4400241 TTACCGACTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 14 0.35
39 26 0.65
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (39 bp):
TTACTGATTAGGCACTTTATGTGCCGAATACTGTTACTG
Found at i:4400239 original size:39 final size:39
Alignment explanation
Indices: 4400158--4400278 Score: 127
Period size: 45 Copynumber: 3.0 Consensus size: 39
4400148 ATTTGCCGGC
* * * *
4400158 TTACTGATTAGGCAC-TTATGTGCCGACTACTGTTACTG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
4400196 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
* *
4400235 TTACTGTTACCGACTCGGCACTTTGTGTGTCAAATACTGTTACT
1 TTAC---T---GATTCGGCACTTTGTGTGTCGAATACTGTTACT
4400279 ACTGTTACTG
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
38 14 0.20
39 24 0.34
42 1 0.01
45 31 0.44
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.39
Consensus pattern (39 bp):
TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
Found at i:4400253 original size:45 final size:45
Alignment explanation
Indices: 4400185--4400377 Score: 215
Period size: 45 Copynumber: 4.1 Consensus size: 45
4400175 ATGTGCCGAC
* *
4400185 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGT
1 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGT
*
4400230 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCAAATACTGTTACTACTGT
1 TACTGTTACTGTTACCGACTCGGCACTTTGTGTG-----T-C-G--AATACTGT
* *
4400284 TACTGTTACTGTTACCGACTCGGCGCTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGT
* * * * *
4400329 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACTGT
1 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGT
4400374 TACT
1 TACT
4400378 ACTACCGTTA
Statistics
Matches: 127, Mismatches: 12, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
45 82 0.65
47 1 0.01
49 1 0.01
50 1 0.01
51 1 0.01
52 1 0.01
54 40 0.31
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (45 bp):
TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGT
Found at i:4400286 original size:54 final size:54
Alignment explanation
Indices: 4400224--4400343 Score: 192
Period size: 54 Copynumber: 2.3 Consensus size: 54
4400214 GTGTGTCGAA
4400224 TACTGTTACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCAAATACTGTTAC
1 TACTGTTACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCAAATACTGTTAC
* **
4400278 TACTGTTACTGTTACTGTTACCGACTCGGCGCTTTGTGTGTTGAATACTGTTAC
1 TACTGTTACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCAAATACTGTTAC
4400332 --C-GTTACTGTTAC
1 TACTGTTACTGTTAC
4400344 AGATTCAGCA
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
51 11 0.17
52 1 0.02
54 51 0.81
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (54 bp):
TACTGTTACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCAAATACTGTTAC
Found at i:4400355 original size:99 final size:100
Alignment explanation
Indices: 4400185--4400398 Score: 304
Period size: 99 Copynumber: 2.1 Consensus size: 100
4400175 ATGTGCCGAC
* * * *
4400185 TACTGTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTGTTACTGTTACCGACT
1 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGTTACCGTTACTGTTACAGACT
*
4400250 CGGCACTTTGTGTGTCAAATACTGTTACTACT-GT
66 CAGCACTTTGTGTGTCAAATACTGTTACTACTCGT
* * *
4400284 TACTGTTACTGTTACCGACTCGGCGCTTTGTGTGTTGAATACTGTTACCGTTACTGTTACAGATT
1 TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGTTACCGTTACTGTTACAGACT
**
4400349 CAGCACTTTGTGTGTTGAATACTGTTACTACTACCGT
66 CAGCACTTTGTGTGTCAAATACTGTTACTACT--CGT
4400386 TACTGATTACTGT
1 TACTG-TTACTGT
4400399 ATACTGGTGT
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
99 87 0.86
102 7 0.07
103 7 0.07
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (100 bp):
TACTGTTACTGTTACCGACTCGGCACTTTGTGTGTCGAATACTGTTACCGTTACTGTTACAGACT
CAGCACTTTGTGTGTCAAATACTGTTACTACTCGT
Done.