Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 151 of 214
Found at i:45015787 original size:147 final size:148
Alignment explanation
Indices: 45015549--45016662 Score: 1828
Period size: 147 Copynumber: 7.5 Consensus size: 148
45015539 GGCGTTTTTT
* * * *
45015549 CTATTTCTTACCTTTAGCGGTGTTTTTCATAAAAGTGCCGCAAAAAAATTCATTTTGAACAAAAT
1 CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
*
45015614 TACCCCGTTTTGCTATGCTATGCTAAAA-GGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCG
66 TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCG
45015678 -TTTTTATATAAACGCCG
131 TTTTTTATATAAACGCCG
* * *
45015695 CTATTGCTTACCTTTAGCGGCGTTTTTCGTAAAAGCGCCACAAAAAAAATTCATTTTAAACAAAA
1 CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGC-AAAAAAATTCATTTTGAACAAAA
* *
45015760 CTACGCCGTTTTGCTATGCTATGCTAAAA-GGGGTTATTTTTT-AAAGTAAAATTATTTTGTGGG
65 CTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGC
45015823 GTTTTTTTATATAAACGCCG
130 G-TTTTTTATATAAACGCCG
**
45015843 CTATTGCTTACCTTTAGCGGCGTTTTTTGTAAAAGCGCCGCAAAAAAAATTCATTTTGAACAAAA
1 CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGC-AAAAAAATTCATTTTGAACAAAA
45015908 CTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAA-TAAAATTATTTTGTGGC
65 CTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGC
* *
45015972 GTTTTTTATAAAAACGCTG
130 GTTTTTTATATAAACGCCG
*
45015991 CTATTGCTTACCTTTAGCGACGTTTTTCATAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
*
45016056 TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCG
66 TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCG
45016121 -TTTTTATATAAACGCCG
131 TTTTTTATATAAACGCCG
* *
45016138 CTATTGCTTACCTTTAGCTGCGTTTTTCGTAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
*
45016203 TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCG
66 TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCG
*
45016268 TTTTTTATAAAAACGCCG
131 TTTTTTATATAAACGCCG
*
45016286 CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAAA-TCGTTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
* * *
45016350 TACGCCATTTTGCTATGCTGTGCTAAAATGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCG
66 TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCG
*
45016415 TTTTTTATTTAAACGCCG
131 TTTTTTATATAAACGCCG
* * * * * *
45016433 CTATTGCTTACATTTAGCGGCATTTTTCGTAAAAGCGTCACAAAAAAATTTCGTTTTGAACAAAA
1 CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAAA-TTCATTTTGAACAAAA
*
45016498 CTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGC
65 CTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGC
*
45016563 GTTTTTTATAAAAACGCCG
130 GTTTTTTATATAAACGCCG
* *
45016582 CTATTGCCTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGTAAAAAAATTCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
45016647 TACGCCGTTTTGCTAT
66 TACGCCGTTTTGCTAT
45016663 TCTAAAAATT
Statistics
Matches: 904, Mismatches: 55, Indels: 16
0.93 0.06 0.02
Matches are distributed among these distances:
146 57 0.06
147 407 0.45
148 274 0.30
149 163 0.18
150 3 0.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (148 bp):
CTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCG
TTTTTTATATAAACGCCG
Found at i:45016127 original size:295 final size:295
Alignment explanation
Indices: 45015549--45016662 Score: 1846
Period size: 295 Copynumber: 3.8 Consensus size: 295
45015539 GGCGTTTTTT
* * * * *
45015549 CTATTTCTTACCTTTAGCGGTGTTTTTCATAAAAGTGCCGCAAAAAAATTCATTTTGAACAAAAT
1 CTATTGCTTACCTTTAGCGGCGTTTTTCGTAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
*
45015614 TACCCCGTTTTGCTATGCTATGCTAAAA-GGGGCTA-TTTTTTAAAAGTAAAATTATTTTGTGGC
66 TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAA-TAAAATTATTTTGTGGC
* * *
45015677 G-TTTTTATATAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTTCGTAAAAGCGCCACAAAAA
130 GTTTTTTATAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGC-AAAA
* *
45015741 AAATTCATTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGGGGTTA-TTTTTTAAA
194 AAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGGGGCTATTTTTTTAAA
*
45015805 GTAAAATTATTTTGTGGGGTTTTTTTATATAAACGCCG
259 GTAAAATTATTTTGTGGCG-TTTTTTATATAAACGCCG
*
45015843 CTATTGCTTACCTTTAGCGGCGTTTTTTGTAAAAGCGCCGCAAAAAAAATTCATTTTGAACAAAA
1 CTATTGCTTACCTTTAGCGGCGTTTTTCGTAAAAGCGCCGC-AAAAAAATTCATTTTGAACAAAA
45015908 CTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTA-TTTTTTAAAATAAAATTATTTTGTGGC
65 CTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAATAAAATTATTTTGTGGC
* *
45015972 GTTTTTTATAAAAACGCTGCTATTGCTTACCTTTAGCGACGTTTTTCATAAAAGCGCCGCAAAAA
130 GTTTTTTATAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAA
45016037 AATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAA
195 AATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAA-GGGGCTATTTTTTTAAA
45016102 GTAAAATTATTTTGTGGCG-TTTTTATATAAACGCCG
259 GTAAAATTATTTTGTGGCGTTTTTTATATAAACGCCG
*
45016138 CTATTGCTTACCTTTAGCTGCGTTTTTCGTAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
1 CTATTGCTTACCTTTAGCGGCGTTTTTCGTAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
*
45016203 TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCG
66 TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAATAAAATTATTTTGTGGCG
45016268 TTTTTTATAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAA
131 TTTTTTATAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAA
* * * *
45016333 A-TCGTTTTGAACAAAACTACGCCATTTTGCTATGCTGTGCTAAAATGGGGCTATTTTTTAAAAG
196 ATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAA-GGGGCTATTTTTTTAAAG
*
45016397 TAAAATTATTTTGTGGCGTTTTTTATTTAAACGCCG
260 TAAAATTATTTTGTGGCGTTTTTTATATAAACGCCG
* * * * *
45016433 CTATTGCTTACATTTAGCGGCATTTTTCGTAAAAGCGTCACAAAAAAATTTCGTTTTGAACAAAA
1 CTATTGCTTACCTTTAGCGGCGTTTTTCGTAAAAGCGCCGCAAAAAAA-TTCATTTTGAACAAAA
*
45016498 CTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGC
65 CTACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAATAAAATTATTTTGTGGC
* *
45016563 GTTTTTTATAAAAACGCCGCTATTGCCTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGTAAAAA
130 GTTTTTTATAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAA
45016628 AATTCATTTTGAACAAAACTACGCCGTTTTGCTAT
195 AATTCATTTTGAACAAAACTACGCCGTTTTGCTAT
45016663 TCTAAAAATT
Statistics
Matches: 775, Mismatches: 36, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
294 172 0.22
295 325 0.42
296 221 0.29
297 57 0.07
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (295 bp):
CTATTGCTTACCTTTAGCGGCGTTTTTCGTAAAAGCGCCGCAAAAAAATTCATTTTGAACAAAAC
TACGCCGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTTTTAAAATAAAATTATTTTGTGGCG
TTTTTTATAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAAAGCGCCGCAAAAAA
ATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGGGGCTATTTTTTTAAAGT
AAAATTATTTTGTGGCGTTTTTTATATAAACGCCG
Found at i:45017112 original size:15 final size:14
Alignment explanation
Indices: 45017097--45017167 Score: 65
Period size: 14 Copynumber: 4.9 Consensus size: 14
45017087 ACCCCTAAAT
*
45017097 CCCTAAACCTTAAAT
1 CCCTAAACCTT-AAC
45017112 CCCT-AACTCTTAAC
1 CCCTAAAC-CTTAAC
*
45017126 CCCT-AACATCTAAC
1 CCCTAAACCT-TAAC
*
45017140 CCCTAAACCCCTAAC
1 CCCTAAA-CCTTAAC
45017155 CCCTAAACCTTAA
1 CCCTAAACCTTAA
45017168 ATCCCGACAC
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
13 1 0.02
14 25 0.53
15 20 0.43
16 1 0.02
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCTAAACCTTAAC
Found at i:45017132 original size:7 final size:7
Alignment explanation
Indices: 45017112--45017160 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
45017102 AACCTTAAAT
45017112 CCCTAAC
1 CCCTAAC
* *
45017119 TCTTAAC
1 CCCTAAC
45017126 CCCTAAC
1 CCCTAAC
**
45017133 ATCTAAC
1 CCCTAAC
45017140 CCCTAAAC
1 CCCT-AAC
45017148 CCCTAAC
1 CCCTAAC
45017155 CCCTAA
1 CCCTAA
45017161 ACCTTAAATC
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (7 bp):
CCCTAAC
Found at i:45017168 original size:22 final size:22
Alignment explanation
Indices: 45017123--45017168 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
45017113 CCTAACTCTT
* *
45017123 AACCCCTAACATCTAACCCCTA
1 AACCCCTAACACCTAAACCCTA
* *
45017145 AACCCCTAACCCCTAAACCTTA
1 AACCCCTAACACCTAAACCCTA
45017167 AA
1 AA
45017169 TCCCGACACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.43, G:0.00, T:0.17
Consensus pattern (22 bp):
AACCCCTAACACCTAAACCCTA
Found at i:45017445 original size:15 final size:15
Alignment explanation
Indices: 45017425--45017479 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
45017415 CCTAGCACGT
45017425 CTAACCCCTAAACCC
1 CTAACCCCTAAACCC
45017440 CTAACCCTCT-AACCC
1 CTAACCC-CTAAACCC
* * *
45017455 CTAAACCTTAAATCC
1 CTAACCCCTAAACCC
45017470 C-AACCCCTAA
1 CTAACCCCTAA
45017480 TCCATAATCC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 8 0.24
15 23 0.70
16 2 0.06
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (15 bp):
CTAACCCCTAAACCC
Found at i:45017461 original size:8 final size:7
Alignment explanation
Indices: 45017425--45017458 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
45017415 CCTAGCACGT
45017425 CTAACCC
1 CTAACCC
45017432 CTAAACCC
1 CT-AACCC
45017440 CTAACCC
1 CTAACCC
45017447 TCTAACCC
1 -CTAACCC
45017455 CTAA
1 CTAA
45017459 ACCTTAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAACCC
Found at i:45017493 original size:14 final size:14
Alignment explanation
Indices: 45017474--45017522 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
45017464 AAATCCCAAC
45017474 CCCTAATCCATAAT
1 CCCTAATCCATAAT
45017488 CCCTAATCCATAAT
1 CCCTAATCCATAAT
* * *
45017502 CTCTAAACCCATACT
1 CCCT-AATCCATAAT
45017517 CCCTAA
1 CCCTAA
45017523 ACTGACCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 19 0.63
15 11 0.37
ACGTcount: A:0.35, C:0.39, G:0.00, T:0.27
Consensus pattern (14 bp):
CCCTAATCCATAAT
Found at i:45017879 original size:114 final size:114
Alignment explanation
Indices: 45017675--45018210 Score: 749
Period size: 114 Copynumber: 4.7 Consensus size: 114
45017665 TATTTTTTTG
* * *
45017675 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCATCGTTGGGCTTAGGTTATTTTGCGGCGCTTAC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
* *
45017740 TCAAAAACGCCGC-CAAAGCCGTAAGCATTAGCGGCGCCTTCTTAAAAAC
66 TCAAAAACGCCGCTAAAAACC-TAAGCATTAGCGGCGCCTTCTTAAAAAC
* *
45017789 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTTGGCTTATGTTTTTTTGCGGCGCTTTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
45017854 -CTAAAAACGCCGCTAAAAACCTAAGCATTAGCGGCG-CTTCCTTAAAAAC
66 TC-AAAAACGCCGCTAAAAACCTAAGCATTAGCGGCGCCTT-CTTAAAAAC
* * *
45017903 GCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTATTTTGCGGCGCTTAC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
* * * ** *
45017968 TCAAAAACGCCGCTAAAGACCTAAGCATTAGCGGCGCTTTATGGAAAAT
66 TCAAAAACGCCGCTAAAAACCTAAGCATTAGCGGCGCCTTCTTAAAAAC
* *
45018017 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCATCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
** *
45018082 TCAAAAACGCCGCTAAAGCCCTGAA-CATTAGCGGCGCTTTCTTAAAAAC
66 TCAAAAACGCCGCTAAAAACCT-AAGCATTAGCGGCGCCTTCTTAAAAAC
* * * * *
45018131 GCTGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGG-TTTTTTGCGACGCTTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
**
45018195 TGGAAAACGCCGCTAA
66 TCAAAAACGCCGCTAA
45018211 TGCTAATTTT
Statistics
Matches: 381, Mismatches: 35, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
113 34 0.09
114 337 0.88
115 10 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (114 bp):
GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC
TCAAAAACGCCGCTAAAAACCTAAGCATTAGCGGCGCCTTCTTAAAAAC
Found at i:45019678 original size:27 final size:27
Alignment explanation
Indices: 45019640--45019693 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
45019630 TATTATTTTG
*
45019640 TGATTAGAGTTTTGAGTTTAGGGTTTA
1 TGATTAGAGTTTAGAGTTTAGGGTTTA
* *
45019667 TGATGTAG-GTTTAGTGTTTTGGGTTTA
1 TGAT-TAGAGTTTAGAGTTTAGGGTTTA
45019694 AGGTTTAGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (27 bp):
TGATTAGAGTTTAGAGTTTAGGGTTTA
Found at i:45019728 original size:21 final size:21
Alignment explanation
Indices: 45019673--45019736 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
45019663 TTTATGATGT
* *
45019673 AGGTTTAGTGTTTTGGGTTTA
1 AGGTTTAGAGTTTGGGGTTTA
45019694 AGGTTTAGGAGTTTGGGGTTTA
1 AGGTTTA-GAGTTTGGGGTTTA
*
45019716 AGGTTT-GAGGTTTGGAGTTTA
1 AGGTTTAGA-GTTTGGGGTTTA
45019737 GGCCGCTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 2 0.05
21 18 0.47
22 18 0.47
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (21 bp):
AGGTTTAGAGTTTGGGGTTTA
Found at i:45021855 original size:10 final size:10
Alignment explanation
Indices: 45021840--45021865 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
45021830 TCTTTGAAAA
45021840 CTATGTTAAG
1 CTATGTTAAG
45021850 CTATGTTAAG
1 CTATGTTAAG
45021860 CTATGT
1 CTATGT
45021866 AAGACAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (10 bp):
CTATGTTAAG
Found at i:45023370 original size:43 final size:44
Alignment explanation
Indices: 45023241--45023378 Score: 197
Period size: 44 Copynumber: 3.2 Consensus size: 44
45023231 ATTCTATAGC
* * *
45023241 GGCGTTTGTGGAAAAAATCGCCGCTAACGAACATGACCTTTAGC
1 GGCGTTTGTGGAAAAAAACGCCGCTAAAGAACATGACCTTTAGT
* * *
45023285 GGCGTTTGTGGAAAAAAACGCCACTAAAGAACATTACTTTTAGT
1 GGCGTTTGTGGAAAAAAACGCCGCTAAAGAACATGACCTTTAGT
* *
45023329 GGCGTTTGTGG-AGAAAGCGCCGCTAAAGAACATGACCTTTAGT
1 GGCGTTTGTGGAAAAAAACGCCGCTAAAGAACATGACCTTTAGT
45023372 GGCGTTT
1 GGCGTTT
45023379 ATTTCTGTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
43 34 0.41
44 49 0.59
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (44 bp):
GGCGTTTGTGGAAAAAAACGCCGCTAAAGAACATGACCTTTAGT
Found at i:45028391 original size:25 final size:26
Alignment explanation
Indices: 45028362--45028415 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
45028352 ACATCTCTTA
45028362 TGAGCTTCCCGATT-A-TGGCTCTTCG
1 TGAGCTTCCCG-TTAATTGGCTCTTCG
* *
45028387 TGAGCTTTCCGTTAATTGGCTCTTTG
1 TGAGCTTCCCGTTAATTGGCTCTTCG
45028413 TGA
1 TGA
45028416 CTTTCCTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 2 0.08
25 11 0.44
26 12 0.48
ACGTcount: A:0.13, C:0.22, G:0.24, T:0.41
Consensus pattern (26 bp):
TGAGCTTCCCGTTAATTGGCTCTTCG
Found at i:45043985 original size:18 final size:19
Alignment explanation
Indices: 45043952--45043991 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
45043942 AACATGTTTC
* *
45043952 TTTTATTTT-ATTTTTTAT
1 TTTTATTTTAAATTTTAAT
45043970 TTTTATTTTAAATTTTAAT
1 TTTTATTTTAAATTTTAAT
45043989 TTT
1 TTT
45043992 CTCATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTATTTTAAATTTTAAT
Found at i:45047593 original size:19 final size:20
Alignment explanation
Indices: 45047551--45047603 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
45047541 TACCTTTTTT
45047551 TGCATT-CATTTCATTCATCA
1 TGCATTACATTTCA-TCATCA
45047571 -GCATTACATTTCATCA-CA
1 TGCATTACATTTCATCATCA
*
45047589 TGCATTAAATTTCAT
1 TGCATTACATTTCAT
45047604 AAAAAGACCC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 2 0.07
19 21 0.70
20 7 0.23
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.42
Consensus pattern (20 bp):
TGCATTACATTTCATCATCA
Found at i:45052024 original size:43 final size:43
Alignment explanation
Indices: 45051939--45052215 Score: 324
Period size: 43 Copynumber: 6.5 Consensus size: 43
45051929 CGCTAAAAGT
* *
45051939 CATGACCTTTAGCGGCGC-TTTCCCACAAACGCCGCTATATAC
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAC
* * * *
45051981 CACGACCTTTAGCGACGCTTTTTCCACAAACGCCGCTAAATAC
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAC
* * * * *
45052024 CATGATCTTTAGCGACGCTTTTCCCACAAACACCGCTATAGAG
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAC
*
45052067 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCTGCTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAC
** * *
45052110 CATGACCTTTAGCGGCGCTTTTATCACAAACGCCGTTAAAGAA
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAC
** * * *
45052153 CATGACCTTTAGCGGCGCTTTTTATCACAAACGCCACTATAGAA
1 CATGACCTTTAGCGGCGC-TTTTCCCACAAACGCCGCTAAAGAC
* *
45052197 CA-AACCTTTAGCGACGCTT
1 CATGACCTTTAGCGGCGCTT
45052216 CTCGACAAAA
Statistics
Matches: 206, Mismatches: 27, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
42 18 0.09
43 164 0.80
44 24 0.12
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAC
Found at i:45052142 original size:129 final size:130
Alignment explanation
Indices: 45051939--45052215 Score: 364
Period size: 129 Copynumber: 2.2 Consensus size: 130
45051929 CGCTAAAAGT
* *
45051939 CATGACCTTTAGCGGCGC-TTTCCCACAAACGCCGCTATATACCACGACCTTTAGCGACGCTTTT
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCACGACCTTTAGCGACGCTTTT
* * * * * *
45052003 TCCACAAACGCCGCTAAATACCATGATCTTTAGCGACGC-TTTTCCCACAAACACCGCTATAGAG
66 TCCACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTTACCACAAACACCACTATAGAA
* * *
45052067 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCTGCTAAAGACCATGACCTTTAGCGGCGCTTTT
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCACGACCTTTAGCGACGCTTTT
* * * *
45052132 AT-CACAAACGCCGTTAAAGAACATGACCTTTAGCGGCGCTTTTTATCACAAACGCCACTATAGA
66 -TCCACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTTACCACAAACACCACTATAGA
45052196 A
130 A
* *
45052197 CA-AACCTTTAGCGACGCTT
1 CATGACCTTTAGCGGCGCTT
45052216 CTCGACAAAA
Statistics
Matches: 129, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
128 18 0.14
129 88 0.68
130 23 0.18
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (130 bp):
CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCACGACCTTTAGCGACGCTTTT
TCCACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTTACCACAAACACCACTATAGAA
Found at i:45057411 original size:14 final size:15
Alignment explanation
Indices: 45057391--45057419 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45057381 AAACCAGAAC
45057391 CCCTAA-TCCATAAT
1 CCCTAATTCCATAAT
45057405 CCCTAATTCCATAAT
1 CCCTAATTCCATAAT
45057420 ATATAAACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (15 bp):
CCCTAATTCCATAAT
Found at i:45057867 original size:41 final size:41
Alignment explanation
Indices: 45057821--45058016 Score: 284
Period size: 41 Copynumber: 4.8 Consensus size: 41
45057811 AAATGTTTTT
* * ***
45057821 GCGGCGCTTTTTAAAAAACGCCGCTAAAGCATTGAGCATTA
1 GCGGCGCTTCTCAAAAAACGCCGCTAAAGCCCGGAGCATTA
* * *
45057862 GCGGCGCTTCTCCAAAAACGCTGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTCTCAAAAAACGCCGCTAAAGCCCGGAGCATTA
* *
45057903 GCGACGCTTCTCTAAAAACGCCGCTAAAGCCCGGAGCATTA
1 GCGGCGCTTCTCAAAAAACGCCGCTAAAGCCCGGAGCATTA
*
45057944 GCGGCGCTTCTCAAAAAACACCGCTAAAGCCCGGAGCATTA
1 GCGGCGCTTCTCAAAAAACGCCGCTAAAGCCCGGAGCATTA
*
45057985 GCGGCGCTTCTCCAAAAACGCCGCTAAAGCCC
1 GCGGCGCTTCTCAAAAAACGCCGCTAAAGCCC
45058017 CGAAAGGTCA
Statistics
Matches: 140, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 140 1.00
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (41 bp):
GCGGCGCTTCTCAAAAAACGCCGCTAAAGCCCGGAGCATTA
Found at i:45058071 original size:65 final size:65
Alignment explanation
Indices: 45057992--45058114 Score: 219
Period size: 65 Copynumber: 1.9 Consensus size: 65
45057982 TTAGCGGCGC
* *
45057992 TTCTCCAAAAACGCCGCTAAAGCCCCGAAAGGTCAAAAAAAGATGTCGTTGGGCTTAGCGGCATT
1 TTCTCAAAAAACGCCGCTAAAGCCCCGAAAGGTCAAAAAAAGATGTCGTTGAGCTTAGCGGCATT
*
45058057 TTCTCAAAAAACGCCGCTAAAGCCCCGAAAGGTCAAAAAACGATGTCGTTGAGCTTAG
1 TTCTCAAAAAACGCCGCTAAAGCCCCGAAAGGTCAAAAAAAGATGTCGTTGAGCTTAG
45058115 GTTTTTTGCG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (65 bp):
TTCTCAAAAAACGCCGCTAAAGCCCCGAAAGGTCAAAAAAAGATGTCGTTGAGCTTAGCGGCATT
Found at i:45058154 original size:31 final size:31
Alignment explanation
Indices: 45058119--45058178 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
45058109 GCTTAGGTTT
*
45058119 TTTGCGGCGTAATTCTTATTTTTAGCGGCGC
1 TTTGCGGCGTAATTATTATTTTTAGCGGCGC
45058150 TTTGCGGCGTAATTATTATTTTTAGCGGC
1 TTTGCGGCGTAATTATTATTTTTAGCGGC
45058179 ATTTTTTATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.15, C:0.17, G:0.25, T:0.43
Consensus pattern (31 bp):
TTTGCGGCGTAATTATTATTTTTAGCGGCGC
Found at i:45062905 original size:12 final size:11
Alignment explanation
Indices: 45062874--45062903 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
45062864 TCCTACTGTC
*
45062874 AACAAACATAA
1 AACAAAAATAA
45062885 AACAAAAATAA
1 AACAAAAATAA
45062896 AACAAAAA
1 AACAAAAA
45062904 ATGGGCTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.80, C:0.13, G:0.00, T:0.07
Consensus pattern (11 bp):
AACAAAAATAA
Found at i:45067921 original size:20 final size:20
Alignment explanation
Indices: 45067893--45067935 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45067883 AAAAATTTTT
* *
45067893 ATATTTAAAACCATAATAAA
1 ATATATAAAACCAAAATAAA
*
45067913 ATATATAAAACTAAAATAAA
1 ATATATAAAACCAAAATAAA
45067933 ATA
1 ATA
45067936 AAAACACCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (20 bp):
ATATATAAAACCAAAATAAA
Found at i:45070042 original size:29 final size:29
Alignment explanation
Indices: 45070003--45070058 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
45069993 GCTAATTAAG
*
45070003 ATTAAGTTTTGGTTAATTAAAGTTTAATAA
1 ATTAAGTTTTGATTAATTAAA-TTTAATAA
45070033 ATTAA-TTTTGATTAATTAAATTTAAT
1 ATTAAGTTTTGATTAATTAAATTTAAT
45070059 CAAAAGTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 6 0.24
29 14 0.56
30 5 0.20
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (29 bp):
ATTAAGTTTTGATTAATTAAATTTAATAA
Found at i:45075660 original size:25 final size:24
Alignment explanation
Indices: 45075632--45075684 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
45075622 CTGAATAATG
* *
45075632 GTAAGCTCATACGAGCTGAGTATCA
1 GTAAGCTCATAAGAGCTG-GAATCA
*
45075657 GTAAGCTTATAAGAGCTGGAATCA
1 GTAAGCTCATAAGAGCTGGAATCA
45075681 GTAA
1 GTAA
45075685 CCCTAATGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (24 bp):
GTAAGCTCATAAGAGCTGGAATCA
Found at i:45078009 original size:28 final size:28
Alignment explanation
Indices: 45077956--45078009 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
45077946 TGAGTAGCCT
* *
45077956 AAATATCATAGCTTGTATCAGCAAATTC
1 AAATATCATAACTTGTATCAGAAAATTC
* *
45077984 AAATATCATAACTTGTGTGAGAAAAT
1 AAATATCATAACTTGTATCAGAAAAT
45078010 CGAATTATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.31
Consensus pattern (28 bp):
AAATATCATAACTTGTATCAGAAAATTC
Found at i:45082088 original size:16 final size:16
Alignment explanation
Indices: 45082067--45082100 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
45082057 AACTCAATAG
45082067 TTAGTTGTT-TTATTAT
1 TTAGTT-TTATTATTAT
45082083 TTAGTTTTATTATTAT
1 TTAGTTTTATTATTAT
45082099 TT
1 TT
45082101 TATTTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 15 0.88
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.71
Consensus pattern (16 bp):
TTAGTTTTATTATTAT
Found at i:45082091 original size:13 final size:13
Alignment explanation
Indices: 45082073--45082110 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
45082063 ATAGTTAGTT
45082073 GTTTTATTATTTA
1 GTTTTATTATTTA
45082086 GTTTTATTA-TTA
1 GTTTTATTATTTA
45082098 -TTTTATTTATTTA
1 GTTTTA-TTATTTA
45082111 CTTTAGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 5 0.22
12 6 0.26
13 12 0.52
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (13 bp):
GTTTTATTATTTA
Found at i:45101691 original size:3 final size:3
Alignment explanation
Indices: 45101683--45101723 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
45101673 AACTAAAGAA
45101683 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
45101724 GAAATTAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45103498 original size:23 final size:23
Alignment explanation
Indices: 45103472--45103862 Score: 303
Period size: 23 Copynumber: 16.7 Consensus size: 23
45103462 GAGCATCATG
* *
45103472 TATATACCAATTTGGACAGCACT-
1 TATATACAAAATTGGACAGCA-TA
* * *
45103495 TATACACAAAATTTGACAGCATG
1 TATATACAAAATTGGACAGCATA
*
45103518 TATATACAAAATTGGACAGCATT
1 TATATACAAAATTGGACAGCATA
* *
45103541 TAT-TCACCCAAATTGGGCAGCATA
1 TATAT-A-CAAAATTGGACAGCATA
* *
45103565 TATATACCAATTTGGACAGCACT-
1 TATATACAAAATTGGACAGCA-TA
* * * *
45103588 TATACAAAAAATTTGACAGCATG
1 TATATACAAAATTGGACAGCATA
*
45103611 TATATACAAAATTGGACAGCATT
1 TATATACAAAATTGGACAGCATA
*
45103634 TAT-TCACCAAAATTGGGCAGCATATA
1 TATAT-A-CAAAATTGGACAGC--ATA
*
45103660 TATATACCAAATTGGACAGCACT-
1 TATATACAAAATTGGACAGCA-TA
* * *
45103683 TATACACAAAATTTGACAGCATG
1 TATATACAAAATTGGACAGCATA
*
45103706 TATATACAAAATTGGACAGCATT
1 TATATACAAAATTGGACAGCATA
*
45103729 TAT-TCAACAAAATTGGGCAGCATA
1 TATAT--ACAAAATTGGACAGCATA
* *
45103753 TATATACCAATTTGGACAGCACT-
1 TATATACAAAATTGGACAGCA-TA
* * * *
45103776 TATACACAAAATTTGACAGGATG
1 TATATACAAAATTGGACAGCATA
* *
45103799 TATATACAAAACTGGACAGCATT
1 TATATACAAAATTGGACAGCATA
*
45103822 TAT-TCACCAAAATTGGGCAGCATA
1 TATAT-A-CAAAATTGGACAGCATA
* *
45103846 TATATACCAATTTGGAC
1 TATATACAAAATTGGAC
45103863 CATTAAAGCA
Statistics
Matches: 295, Mismatches: 52, Indels: 42
0.76 0.13 0.11
Matches are distributed among these distances:
22 8 0.03
23 194 0.66
24 71 0.24
25 15 0.05
26 6 0.02
27 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (23 bp):
TATATACAAAATTGGACAGCATA
Found at i:45103569 original size:93 final size:93
Alignment explanation
Indices: 45103435--45103862 Score: 714
Period size: 93 Copynumber: 4.6 Consensus size: 93
45103425 TCTACCCTGT
* * * * *
45103435 TTGGACAGC-TCTTATACATCAGAAATTGAGCATCATGTATATACCAATTTGGACAGCACTTATA
1 TTGGACAGCAT-TTATTCACCA-AAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATA
45103499 CACAAAATTTGACAGCATGTATATACAAAA
64 CACAAAATTTGACAGCATGTATATACAAAA
*
45103529 TTGGACAGCATTTATTCACCCAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
*
45103594 AAAAATTTGACAGCATGTATATACAAAA
66 CAAAATTTGACAGCATGTATATACAAAA
*
45103622 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATATACCAAATTGGACAGCACTTATA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGC--ATATATATACCAATTTGGACAGCACTTATA
45103687 CACAAAATTTGACAGCATGTATATACAAAA
64 CACAAAATTTGACAGCATGTATATACAAAA
*
45103717 TTGGACAGCATTTATTCAACAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
*
45103782 CAAAATTTGACAGGATGTATATACAAAA
66 CAAAATTTGACAGCATGTATATACAAAA
*
45103810 CTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGAC
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGAC
45103863 CATTAAAGCA
Statistics
Matches: 316, Mismatches: 15, Indels: 7
0.93 0.04 0.02
Matches are distributed among these distances:
93 209 0.66
94 16 0.05
95 91 0.29
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.28
Consensus pattern (93 bp):
TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
CAAAATTTGACAGCATGTATATACAAAA
Found at i:45103697 original size:188 final size:188
Alignment explanation
Indices: 45103463--45103851 Score: 706
Period size: 188 Copynumber: 2.1 Consensus size: 188
45103453 TCAGAAATTG
* *
45103463 AGCATCATGTATATACCAATTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAA
1 AGCAT-ATATATATACCAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAA
* *
45103528 ATTGGACAGCATTTATTCACCCAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATAC
65 ATTGGACAGCATTTATTCAACAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATAC
*
45103593 AAAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGC
130 AAAAAATTTGACAGCATGTATATACAAAACTGGACAGCATTTATTCACCAAAATTGGGC
45103652 AGCATATATATATACCAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
1 AGCATATATATATACCAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
45103717 TTGGACAGCATTTATTCAACAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
66 TTGGACAGCATTTATTCAACAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
* *
45103782 CAAAATTTGACAGGATGTATATACAAAACTGGACAGCATTTATTCACCAAAATTGGGC
131 AAAAATTTGACAGCATGTATATACAAAACTGGACAGCATTTATTCACCAAAATTGGGC
45103840 AGCATATATATA
1 AGCATATATATA
45103852 CCAATTTGGA
Statistics
Matches: 193, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
188 188 0.97
189 5 0.03
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (188 bp):
AGCATATATATATACCAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
TTGGACAGCATTTATTCAACAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
AAAAATTTGACAGCATGTATATACAAAACTGGACAGCATTTATTCACCAAAATTGGGC
Found at i:45104591 original size:28 final size:28
Alignment explanation
Indices: 45104552--45104647 Score: 156
Period size: 28 Copynumber: 3.4 Consensus size: 28
45104542 TAATACGTTT
* *
45104552 GCACACTTAGTGCTTTGCCATTAAACTC
1 GCACACTTAGTGCTTTACAATTAAACTC
*
45104580 ACACACTTAGTGCTTTACAATTAAACTC
1 GCACACTTAGTGCTTTACAATTAAACTC
*
45104608 GCACACTTAGTGCTTTACAATTAAATTC
1 GCACACTTAGTGCTTTACAATTAAACTC
45104636 GCACACTTAGTG
1 GCACACTTAGTG
45104648 TCGAAAGTCA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTTAGTGCTTTACAATTAAACTC
Found at i:45106248 original size:21 final size:20
Alignment explanation
Indices: 45106223--45106274 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
45106213 TTTTTCCTAG
45106223 GATGTAAATTGTA-TATAATT
1 GATGTAAATTGTATTA-AATT
*
45106243 GAATGTGAATTGTATTAAATT
1 G-ATGTAAATTGTATTAAATT
45106264 GATGTTAAATT
1 GATG-TAAATT
45106275 CATTCATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 4 0.15
21 21 0.78
22 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.44
Consensus pattern (20 bp):
GATGTAAATTGTATTAAATT
Found at i:45106886 original size:24 final size:25
Alignment explanation
Indices: 45106833--45106888 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
45106823 TTCCCGATAT
* *
45106833 ATGGCTATTTGGAGCTTCCCAATTA
1 ATGGCTCTTTGGAGCTACCCAATTA
45106858 ATGGCTCTTTGGAGCTACCC-ATTA
1 ATGGCTCTTTGGAGCTACCCAATTA
*
45106882 TTGGCTC
1 ATGGCTC
45106889 GCATGAGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 10 0.36
25 18 0.64
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (25 bp):
ATGGCTCTTTGGAGCTACCCAATTA
Found at i:45106910 original size:24 final size:25
Alignment explanation
Indices: 45106883--45106938 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 25
45106873 TACCCATTAT
*
45106883 TGGCTCGCATGAGCTTCTTG-AATA
1 TGGCTCGCATGAGCTTCCTGTAATA
* *
45106907 TGGCTCACATGAGCTTCCTGTTATA
1 TGGCTCGCATGAGCTTCCTGTAATA
45106932 TGGCTCG
1 TGGCTCG
45106939 AGATAGGGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 18 0.67
25 9 0.33
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (25 bp):
TGGCTCGCATGAGCTTCCTGTAATA
Found at i:45112860 original size:25 final size:25
Alignment explanation
Indices: 45112831--45112879 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
45112821 ATAAGTTTAC
45112831 AACATATCTAAAATACA-TATAAGCA
1 AACATATCTAAAA-ACATTATAAGCA
* *
45112856 AACATATGTATAAACATTATAAGC
1 AACATATCTAAAAACATTATAAGC
45112880 TTATAATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.53, C:0.14, G:0.06, T:0.27
Consensus pattern (25 bp):
AACATATCTAAAAACATTATAAGCA
Found at i:45113135 original size:41 final size:41
Alignment explanation
Indices: 45113075--45113183 Score: 157
Period size: 41 Copynumber: 2.7 Consensus size: 41
45113065 TTTAACATAT
*
45113075 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCCA-A
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATT-CAGA
* * *
45113116 TCACCGACACTTAGTCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
*
45113157 TCACCGGCACTTAGCCTGCTAGACTTA
1 TCACCGGCACTTAGCCTGCTAGGCTTA
45113184 AAGTCCGAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
40 2 0.03
41 57 0.97
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
Found at i:45113220 original size:82 final size:82
Alignment explanation
Indices: 45113075--45113232 Score: 182
Period size: 82 Copynumber: 1.9 Consensus size: 82
45113065 TTTAACATAT
* * * * *
45113075 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCCAATCACCGACACTTAGTCTGCTAGG-
1 TCACCGGCACTTAGCCTGCTAGACTTAAAGCCTGAATCCAATCACCGACACTTAGCCTACTAGGT
45113139 TTTATAACCTGATTCAGA
66 TTTA-AACCTGATTCAGA
*
45113157 TCACCGGCACTTAGCCTGCTAGACTTAAAGTCC-GAAT-CATTTCACC-AGC-CTTAAGCCTACT
1 TCACCGGCACTTAGCCTGCTAGACTTAAAG-CCTGAATCCA-ATCACCGA-CACTT-AGCCTACT
45113218 AGGTTTTAAACCTGA
62 AGGTTTTAAACCTGA
45113233 AAATTTCAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
81 6 0.09
82 53 0.82
83 6 0.09
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (82 bp):
TCACCGGCACTTAGCCTGCTAGACTTAAAGCCTGAATCCAATCACCGACACTTAGCCTACTAGGT
TTTAAACCTGATTCAGA
Found at i:45120836 original size:14 final size:14
Alignment explanation
Indices: 45120817--45120849 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
45120807 CTACTTAACT
45120817 AATTTCAATACAAG
1 AATTTCAATACAAG
45120831 AATTTCAATACAAG
1 AATTTCAATACAAG
45120845 AATTT
1 AATTT
45120850 TACATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (14 bp):
AATTTCAATACAAG
Found at i:45124585 original size:26 final size:26
Alignment explanation
Indices: 45124556--45124605 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
45124546 CCGATATATA
* *
45124556 GCTCTTCGTGAGCTTTCTGATTAAAG
1 GCTCTTCGTGAGCTTCCTAATTAAAG
*
45124582 GCTCTTTGTGAGCTTCCTAATTAA
1 GCTCTTCGTGAGCTTCCTAATTAA
45124606 TCGCTCTCCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (26 bp):
GCTCTTCGTGAGCTTCCTAATTAAAG
Found at i:45124611 original size:26 final size:26
Alignment explanation
Indices: 45124556--45124612 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
45124546 CCGATATATA
* * *
45124556 GCTCTTCGTGAGCTTTCTGATTAAAG
1 GCTCTTCGTGAGCTTCCTAATTAAAC
* *
45124582 GCTCTTTGTGAGCTTCCTAATTAATC
1 GCTCTTCGTGAGCTTCCTAATTAAAC
45124608 GCTCT
1 GCTCT
45124613 CCGGAACTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (26 bp):
GCTCTTCGTGAGCTTCCTAATTAAAC
Found at i:45124693 original size:25 final size:25
Alignment explanation
Indices: 45124556--45124693 Score: 63
Period size: 26 Copynumber: 5.5 Consensus size: 25
45124546 CCGATATATA
* *
45124556 GCTCTTCGTGAGCTTTCTGATTAAAG
1 GCTCTTCG-GAGCTTCCTGATTAATG
* * *
45124582 GCTCTTTGTGAGCTTCCTAATTAATC
1 GCTCTTCG-GAGCTTCCTGATTAATG
* * *
45124608 GCTCTCCGGAACTTTCC-GA-T-ATA
1 GCTCTTCGGAGC-TTCCTGATTAATG
* *
45124631 GCTCGCTT--GAACTTCCCGA-TATATG
1 GCT--CTTCGGAGCTTCCTGATTA-ATG
* * *
45124656 GCTATCCGAAGCTTCCTGATTAATG
1 GCTCTTCGGAGCTTCCTGATTAATG
45124681 GCTCTTCGGAGCT
1 GCTCTTCGGAGCT
45124694 ACCCATTATT
Statistics
Matches: 83, Mismatches: 20, Indels: 19
0.68 0.16 0.16
Matches are distributed among these distances:
22 4 0.05
23 13 0.16
24 1 0.01
25 32 0.39
26 33 0.40
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (25 bp):
GCTCTTCGGAGCTTCCTGATTAATG
Found at i:45127489 original size:26 final size:26
Alignment explanation
Indices: 45127421--45127499 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
45127411 TTCTATTGCT
* * * *
45127421 ATACCAATATTTTTAAAGATATACCA
1 ATACTAATATTTCTAACGACATACCA
*
45127447 ATACTAAAATTTCTAACGACATACCA
1 ATACTAATATTTCTAACGACATACCA
45127473 ATACTAATATTTCTAAC-ACTATACCA
1 ATACTAATATTTCTAACGAC-ATACCA
45127499 A
1 A
45127500 AATTTTTATC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.32
Consensus pattern (26 bp):
ATACTAATATTTCTAACGACATACCA
Found at i:45127504 original size:20 final size:20
Alignment explanation
Indices: 45127481--45127528 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
45127471 CAATACTAAT
45127481 ATTTCTAACACTATACCAAA
1 ATTTCTAACACTATACCAAA
* * * *
45127501 ATTTTTATCACTTTATCAAA
1 ATTTCTAACACTATACCAAA
*
45127521 ATATCTAA
1 ATTTCTAA
45127529 TGGATGAAAA
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTCTAACACTATACCAAA
Found at i:45128254 original size:4 final size:4
Alignment explanation
Indices: 45128245--45128271 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
45128235 ACTAGTCTTA
45128245 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
45128272 AGTTCTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:45133515 original size:23 final size:23
Alignment explanation
Indices: 45133489--45133665 Score: 89
Period size: 23 Copynumber: 7.4 Consensus size: 23
45133479 TGTACAACAA
45133489 TGGACAGCAATTAAGCATC-AATT
1 TGGACAGC-ATTAAGCATCAAATT
**
45133512 TGGACAGCATTAATATGC-TCAAAAA
1 TGGACAGCATT-A-A-GCATCAAATT
*
45133537 TGGACAGCATTTAAGCA-CTAATT
1 TGGACAGCA-TTAAGCATCAAATT
* **
45133560 TGGACAGCATTAATATGC-TAAAAAA
1 TGGACAGCATT-A-A-GCATCAAATT
* *
45133585 TAGACAGCATTTAAGCA-CTAATT
1 TGGACAGCA-TTAAGCATCAAATT
**
45133608 TGGACAGCATTAATATGC-TCAAAAA
1 TGGACAGCATT-A-A-GCATCAAATT
*
45133633 TGGACAGCAATTAAGCA-CTAATT
1 TGGACAGC-ATTAAGCATCAAATT
45133656 TGGACAGCAT
1 TGGACAGCAT
45133666 CTTATCATCA
Statistics
Matches: 115, Mismatches: 21, Indels: 37
0.66 0.12 0.21
Matches are distributed among these distances:
22 9 0.08
23 50 0.43
24 8 0.07
25 41 0.36
26 7 0.06
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (23 bp):
TGGACAGCATTAAGCATCAAATT
Found at i:45133543 original size:25 final size:25
Alignment explanation
Indices: 45133512--45133646 Score: 125
Period size: 25 Copynumber: 5.5 Consensus size: 25
45133502 AGCATCAATT
45133512 TGGACAGCATTAATATGCTCAAAAA
1 TGGACAGCATTAATATGCTCAAAAA
* * * **
45133537 TGGACAGCATT--TAAGCACTAATT
1 TGGACAGCATTAATATGCTCAAAAA
*
45133560 TGGACAGCATTAATATGCTAAAAAA
1 TGGACAGCATTAATATGCTCAAAAA
* * * * **
45133585 TAGACAGCATT--TAAGCACTAATT
1 TGGACAGCATTAATATGCTCAAAAA
45133608 TGGACAGCATTAATATGCTCAAAAA
1 TGGACAGCATTAATATGCTCAAAAA
45133633 TGGACAGCAATTAA
1 TGGACAGC-ATTAA
45133647 GCACTAATTT
Statistics
Matches: 81, Mismatches: 24, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
23 34 0.42
25 42 0.52
26 5 0.06
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (25 bp):
TGGACAGCATTAATATGCTCAAAAA
Found at i:45133560 original size:48 final size:48
Alignment explanation
Indices: 45133487--45133665 Score: 306
Period size: 48 Copynumber: 3.7 Consensus size: 48
45133477 TTTGTACAAC
45133487 AATGGACAGCAATTAAGCA-TCAATTTGGACAGCATTAATATGCTCAAA
1 AATGGACAGCAATTAAGCACT-AATTTGGACAGCATTAATATGCTCAAA
* *
45133535 AATGGACAGCATTTAAGCACTAATTTGGACAGCATTAATATGCTAAAA
1 AATGGACAGCAATTAAGCACTAATTTGGACAGCATTAATATGCTCAAA
* *
45133583 AATAGACAGCATTTAAGCACTAATTTGGACAGCATTAATATGCTCAAA
1 AATGGACAGCAATTAAGCACTAATTTGGACAGCATTAATATGCTCAAA
45133631 AATGGACAGCAATTAAGCACTAATTTGGACAGCAT
1 AATGGACAGCAATTAAGCACTAATTTGGACAGCAT
45133666 CTTATCATCA
Statistics
Matches: 124, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
48 123 0.99
49 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (48 bp):
AATGGACAGCAATTAAGCACTAATTTGGACAGCATTAATATGCTCAAA
Found at i:45140928 original size:48 final size:48
Alignment explanation
Indices: 45140875--45141075 Score: 298
Period size: 48 Copynumber: 4.2 Consensus size: 48
45140865 AACAACATTC
* * *
45140875 GGACAGCATTGATTTG-TACAAAAATGGACAGCAACTAAGCA-TCAATTT
1 GGACAGCATTAATATGCT-CAAAAATGGACAGCAATTAAGCACT-AATTT
*
45140923 GGACAGCATTAATATGCTCAAAAATGGACAGCATTTAAGCACTAATTT
1 GGACAGCATTAATATGCTCAAAAATGGACAGCAATTAAGCACTAATTT
* * *
45140971 GGACAGCATTAATATGCTTAAAAATAGACAGCATTTAAGCACTAATTT
1 GGACAGCATTAATATGCTCAAAAATGGACAGCAATTAAGCACTAATTT
*
45141019 GGACAGCATTAATATGTTCAAAAATGGACAGCAATTAAGCACTAATTT
1 GGACAGCATTAATATGCTCAAAAATGGACAGCAATTAAGCACTAATTT
45141067 GGACAGCAT
1 GGACAGCAT
45141076 CTTATCATCA
Statistics
Matches: 141, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
48 139 0.99
49 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.26
Consensus pattern (48 bp):
GGACAGCATTAATATGCTCAAAAATGGACAGCAATTAAGCACTAATTT
Found at i:45140953 original size:25 final size:25
Alignment explanation
Indices: 45140922--45141056 Score: 116
Period size: 25 Copynumber: 5.5 Consensus size: 25
45140912 AGCATCAATT
45140922 TGGACAGCATTAATATGCTCAAAAA
1 TGGACAGCATTAATATGCTCAAAAA
* * * **
45140947 TGGACAGCATT--TAAGCACTAATT
1 TGGACAGCATTAATATGCTCAAAAA
*
45140970 TGGACAGCATTAATATGCTTAAAAA
1 TGGACAGCATTAATATGCTCAAAAA
* * * * **
45140995 TAGACAGCATT--TAAGCACTAATT
1 TGGACAGCATTAATATGCTCAAAAA
*
45141018 TGGACAGCATTAATATGTTCAAAAA
1 TGGACAGCATTAATATGCTCAAAAA
45141043 TGGACAGCAATTAA
1 TGGACAGC-ATTAA
45141057 GCACTAATTT
Statistics
Matches: 80, Mismatches: 25, Indels: 9
0.70 0.22 0.08
Matches are distributed among these distances:
23 34 0.43
25 41 0.51
26 5 0.06
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (25 bp):
TGGACAGCATTAATATGCTCAAAAA
Found at i:45140977 original size:23 final size:23
Alignment explanation
Indices: 45140947--45141075 Score: 98
Period size: 23 Copynumber: 5.4 Consensus size: 23
45140937 TGCTCAAAAA
45140947 TGGACAGCATTTAAGCACTAATT
1 TGGACAGCATTTAAGCACTAATT
* * **
45140970 TGGACAGCATTAATATGC-TTAAAAA
1 TGGACAGCATT--TAAGCACT-AATT
*
45140995 TAGACAGCATTTAAGCACTAATT
1 TGGACAGCATTTAAGCACTAATT
* ** * **
45141018 TGGACAGCATTAATATGTTCAAAAA
1 TGGACAGCATT--TAAGCACTAATT
*
45141043 TGGACAGCAATTAAGCACTAATT
1 TGGACAGCATTTAAGCACTAATT
45141066 TGGACAGCAT
1 TGGACAGCAT
45141076 CTTATCATCA
Statistics
Matches: 76, Mismatches: 24, Indels: 12
0.68 0.21 0.11
Matches are distributed among these distances:
23 42 0.55
24 2 0.03
25 32 0.42
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (23 bp):
TGGACAGCATTTAAGCACTAATT
Found at i:45141744 original size:43 final size:42
Alignment explanation
Indices: 45141679--45141832 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 42
45141669 AGCTCATACA
* * *
45141679 ATGCCA-TATCCCAGATATGGTCTTACATGTTAACACATTTCG
1 ATGCCACTGTCCCAGACATGGTCTTACATGTT-ACTCATTTCG
* * * *
45141721 ATGCCACTGTCCCAGACAAGGTCTTATACG--ACTCATATACG
1 ATGCCACTGTCCCAGACATGGTCTTACATGTTACTCAT-TTCG
* *
45141762 ATGCCAAC-GTCCCAGACATGGCCTTACATGTTCTCTCACTTT-G
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGTT-ACTCA-TTTCG
*
45141805 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCCACTGTCCCAGACATGGTCTTACA
45141833 CAAAATCACA
Statistics
Matches: 89, Mismatches: 15, Indels: 15
0.75 0.13 0.13
Matches are distributed among these distances:
40 5 0.06
41 26 0.29
42 9 0.10
43 43 0.48
44 5 0.06
45 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGTTACTCATTTCG
Found at i:45147038 original size:19 final size:22
Alignment explanation
Indices: 45147016--45147068 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 22
45147006 TTATATGGTC
*
45147016 CTTTTCTTTTTA-TT-TTT-TT
1 CTTTTCTTTCTAGTTCTTTGTT
45147035 CTTTTCTTTCTAGTTCTTTGTT
1 CTTTTCTTTCTAGTTCTTTGTT
45147057 CTTCTTCTTTCT
1 CTT-TTCTTTCT
45147069 TTTATCTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 11 0.38
20 2 0.07
21 3 0.10
22 5 0.17
23 8 0.28
ACGTcount: A:0.04, C:0.19, G:0.04, T:0.74
Consensus pattern (22 bp):
CTTTTCTTTCTAGTTCTTTGTT
Found at i:45147044 original size:23 final size:23
Alignment explanation
Indices: 45147018--45147071 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
45147008 ATATGGTCCT
* *
45147018 TTTCTTTTTATTTTTTTCTT-TTC
1 TTTCTTTTT-CTTTGTTCTTCTTC
**
45147041 TTTCTAGTTCTTTGTTCTTCTTC
1 TTTCTTTTTCTTTGTTCTTCTTC
45147064 TTTCTTTT
1 TTTCTTTT
45147072 ATCTCTTTGC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.76
Consensus pattern (23 bp):
TTTCTTTTTCTTTGTTCTTCTTC
Found at i:45148344 original size:22 final size:24
Alignment explanation
Indices: 45148301--45148365 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 24
45148291 ATCTTTTTGT
45148301 ATATGAAACTGAAATTGCTTCTGC
1 ATATGAAACTGAAATTGCTTCTGC
* * *
45148325 ATATGTAACT-AATTTG-TTCTGA
1 ATATGAAACTGAAATTGCTTCTGC
*
45148347 ATCTG-AACTGAAATTGCTT
1 ATATGAAACTGAAATTGCTT
45148366 TTGTTACCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
21 4 0.12
22 14 0.41
23 7 0.21
24 9 0.26
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (24 bp):
ATATGAAACTGAAATTGCTTCTGC
Found at i:45149362 original size:15 final size:15
Alignment explanation
Indices: 45149342--45149380 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
45149332 TACTGATTTC
*
45149342 TTAAATTTTTAGATA
1 TTAAATTTATAGATA
*
45149357 TTAAATTTATAGATT
1 TTAAATTTATAGATA
*
45149372 TTAAGTTTA
1 TTAAATTTA
45149381 AAGGTAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (15 bp):
TTAAATTTATAGATA
Found at i:45149986 original size:15 final size:17
Alignment explanation
Indices: 45149947--45149987 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
45149937 ATTGGAATGG
45149947 TGAATTGATGATGAAAT
1 TGAATTGATGATGAAAT
*
45149964 TGATATTGAT-A-GAATT
1 TGA-ATTGATGATGAAAT
45149980 TGAATTGA
1 TGAATTGA
45149988 ACTGATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.23
16 7 0.32
17 4 0.18
18 6 0.27
ACGTcount: A:0.39, C:0.00, G:0.22, T:0.39
Consensus pattern (17 bp):
TGAATTGATGATGAAAT
Found at i:45165766 original size:6 final size:6
Alignment explanation
Indices: 45165755--45165786 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
45165745 GAGGGTAAGC
45165755 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TT
45165787 GTTAATTTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTCTT
Found at i:45169544 original size:19 final size:20
Alignment explanation
Indices: 45169501--45169544 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
45169491 TATGACCCCT
45169501 ATTTTCTAAAATTTTTAAGA
1 ATTTTCTAAAATTTTTAAGA
* *
45169521 TTTTTCTAAAA-TTTTATGA
1 ATTTTCTAAAATTTTTAAGA
45169540 ATTTT
1 ATTTT
45169545 TTCGTTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.57
Consensus pattern (20 bp):
ATTTTCTAAAATTTTTAAGA
Found at i:45170807 original size:23 final size:23
Alignment explanation
Indices: 45170745--45170791 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
45170735 AGACACAATG
45170745 CACAAAGTCTCGAGACATGAACC
1 CACAAAGTCTCGAGACATGAACC
45170768 CACAAAGTCTCGAGACATGAACC
1 CACAAAGTCTCGAGACATGAACC
45170791 C
1 C
45170792 CTAATGTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.32, G:0.17, T:0.13
Consensus pattern (23 bp):
CACAAAGTCTCGAGACATGAACC
Found at i:45171730 original size:119 final size:119
Alignment explanation
Indices: 45171519--45171753 Score: 400
Period size: 119 Copynumber: 2.0 Consensus size: 119
45171509 TTTTACATGG
* *
45171519 TTTAGTTAAGGGCAAAGTGATAAATGTTCAATTAAATTGTAATCAAATAAAAAAACAAAGGCTAT
1 TTTAGTTAAGGGCAAAGTGATAAATATTCAATTAAATTATAATCAAATAAAAAAACAAAGGCTAT
*
45171584 CATCTCTTTCCTTTTTTTTTTGCCGAAAATGGGAAGAAAGAAACTGGGAGTTAA
66 CATCTCTTTCCTTTTGTTTTTGCCGAAAATGGGAAGAAAGAAACTGGGAGTTAA
* * *
45171638 TTTAGTTAAGGGCAAAGTGGTAAATATTTAATTAAATTATAATCAAATAAAATAAACAAATGCTA
1 TTTAGTTAAGGGCAAAGTGATAAATATTCAATTAAATTATAATCAAATAAAA-AAACAAAGGCTA
45171703 TCATCTCTTTCC-TTTGTTTTTGCCGAAAATGGGAAGAAAGAAACTGGGAGT
65 TCATCTCTTTCCTTTTGTTTTTGCCGAAAATGGGAAGAAAGAAACTGGGAGT
45171754 AGCTTAAGTG
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
119 86 0.79
120 23 0.21
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (119 bp):
TTTAGTTAAGGGCAAAGTGATAAATATTCAATTAAATTATAATCAAATAAAAAAACAAAGGCTAT
CATCTCTTTCCTTTTGTTTTTGCCGAAAATGGGAAGAAAGAAACTGGGAGTTAA
Found at i:45176416 original size:56 final size:56
Alignment explanation
Indices: 45176349--45176460 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
45176339 CAAGTGCCAA
45176349 GCTATTGGTTGAATGGTAATATGATTATTTATAAGATGCATTGAATTGGTTAGTAT
1 GCTATTGGTTGAATGGTAATATGATTATTTATAAGATGCATTGAATTGGTTAGTAT
45176405 GCTATTGGTTGAATGGTAATATGATTATTTATAAGATGCATTGAATTGGTTAGTAT
1 GCTATTGGTTGAATGGTAATATGATTATTTATAAGATGCATTGAATTGGTTAGTAT
45176461 TTAAGTGAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (56 bp):
GCTATTGGTTGAATGGTAATATGATTATTTATAAGATGCATTGAATTGGTTAGTAT
Found at i:45179911 original size:11 final size:11
Alignment explanation
Indices: 45179895--45179938 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
45179885 ATTTTTAAAA
45179895 TTTTAAAATTT
1 TTTTAAAATTT
45179906 TTTTAAAATACTTT
1 TTTT-AAA-A-TTT
*
45179920 TTTTAAATTTT
1 TTTTAAAATTT
45179931 TTTTAAAA
1 TTTTAAAA
45179939 ATAATTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 14 0.50
12 3 0.11
13 4 0.14
14 7 0.25
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:45179923 original size:25 final size:26
Alignment explanation
Indices: 45179895--45179948 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 26
45179885 ATTTTTAAAA
*
45179895 TTTTAAAATTTTTTT-AAAATACTTT
1 TTTTAAAATTTTTTTAAAAATAATTT
*
45179920 TTTTAAATTTTTTTTAAAAATAATTT
1 TTTTAAAATTTTTTTAAAAATAATTT
45179946 TTT
1 TTT
45179949 AGTGTTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (26 bp):
TTTTAAAATTTTTTTAAAAATAATTT
Found at i:45181103 original size:16 final size:16
Alignment explanation
Indices: 45181078--45181112 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45181068 GTTTTACTCT
*
45181078 TAAAAGTATTTTTAAA
1 TAAAAGTATTATTAAA
*
45181094 TAAAATTATTATTAAA
1 TAAAAGTATTATTAAA
45181110 TAA
1 TAA
45181113 GATGTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
TAAAAGTATTATTAAA
Found at i:45187847 original size:19 final size:19
Alignment explanation
Indices: 45187823--45188185 Score: 151
Period size: 19 Copynumber: 18.7 Consensus size: 19
45187813 AGAGGCGCCA
45187823 ATGAATATTGTAATTTTGT
1 ATGAATATTGTAATTTTGT
*
45187842 ATGAATATTGTAATTATTTT
1 ATGAATATTGTAATT-TTGT
45187862 AT-AATTAAATTTGT-ATTTATAGTT
1 ATGAA-T--A-TTGTAATTT-T-G-T
* * **
45187886 TTGGAT-TAAT-ATTTTGT
1 ATGAATATTGTAATTTTGT
45187903 ATGAATATTGTAATTTT-T
1 ATGAATATTGTAATTTTGT
*
45187921 -TG--TA-TG-AATATTG-
1 ATGAATATTGTAATTTTGT
*
45187934 -T-AATATTATAATTTTGT
1 ATGAATATTGTAATTTTGT
45187951 ATGAATATTGTAATTTTGT
1 ATGAATATTGTAATTTTGT
* *
45187970 ATGAATATTGTAATGTCGGGATAT
1 ATGAATATTGTAAT-T----TTGT
45187994 ATTGTAATATTGTAATTTTTTGT
1 A-TG-AATATTGTAA--TTTTGT
*
45188017 ATGAATATTGTAATTATTTT
1 ATGAATATTGTAATT-TTGT
45188037 AT-AATTAAATTTGT-ATTTATAGTT
1 ATGAA-T--A-TTGTAATTT-T-G-T
* * *
45188061 TTGGAT-TAGT-ATTTTGT
1 ATGAATATTGTAATTTTGT
45188078 ATGAATATTGTAATTTTTTGT
1 ATGAATATTGTAA--TTTTGT
45188099 ATGAATATTGTAATTTTGT
1 ATGAATATTGTAATTTTGT
*
45188118 ATGAATATTGTAA-TAT-T
1 ATGAATATTGTAATTTTGT
* *
45188135 AT-AATTTTGTATGAATATTG-
1 ATGAATATTG--T-AATTTTGT
45188155 -T-AATATTGTAATTTTGT
1 ATGAATATTGTAATTTTGT
45188172 ATGAATATTGTAAT
1 ATGAATATTGTAAT
45188186 GTCGGGATAT
Statistics
Matches: 263, Mismatches: 32, Indels: 98
0.67 0.08 0.25
Matches are distributed among these distances:
13 6 0.02
14 4 0.02
15 3 0.01
16 18 0.07
17 16 0.06
18 13 0.05
19 97 0.37
20 27 0.10
21 31 0.12
22 12 0.05
23 11 0.04
24 9 0.03
25 4 0.02
26 10 0.04
27 1 0.00
28 1 0.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (19 bp):
ATGAATATTGTAATTTTGT
Found at i:45187923 original size:48 final size:48
Alignment explanation
Indices: 45187892--45188233 Score: 200
Period size: 48 Copynumber: 7.0 Consensus size: 48
45187882 AGTTTTGGAT
45187892 TAAT-ATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATA
1 TAATAATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATA
* *
45187939 TTATAATTTTGTATGAATATTGTAA--TTTTGTATGAATATTGTAATG
1 TAATAATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATA
* *
45187985 TCGGGAT-ATATTG--T-AATATTGTAATTTTTTGTATGAATATTGTAATTATTTTA
1 T---AATAATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGT-A--A---TA
* * * * *
45188038 TAATTAAATTTGTATTTATAGTTTTGGATTAGTATTTTGTATGAATATTGT-A-A
1 TAA-TAATTTTGTA-TGA-A-TATT-G--TAATTTTTTGTATGAATATTGTAATA
45188091 T--T--TTTTGTATGAATATTGTAA--TTTTGTATGAATATTGTAATA
1 TAATAATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATA
* *
45188133 TTATAATTTTGTATGAATATTGTAATATTGTAATTTTGTATGAATATTGTAATG
1 TAATAATTTTGTATGAATATTGT-A-A-T-T--TTTTGTATGAATATTGTAATA
* *
45188187 TCGGGAT-ATATTG--T-AATATTGTAATTTTTTTGTATGAATATTGTAAT
1 T---AATAATTTTGTATGAATATTGTAA-TTTTTTGTATGAATATTGTAAT
45188234 TATTTTATAA
Statistics
Matches: 237, Mismatches: 18, Indels: 79
0.71 0.05 0.24
Matches are distributed among these distances:
40 17 0.07
41 1 0.00
42 4 0.02
44 2 0.01
45 13 0.05
46 40 0.17
47 23 0.10
48 53 0.22
49 2 0.01
50 4 0.02
51 4 0.02
52 5 0.02
53 12 0.05
54 22 0.09
55 1 0.00
56 6 0.03
57 4 0.02
58 3 0.01
59 1 0.00
61 20 0.08
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.53
Consensus pattern (48 bp):
TAATAATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATA
Found at i:45187943 original size:61 final size:61
Alignment explanation
Indices: 45187835--45187959 Score: 157
Period size: 61 Copynumber: 2.0 Consensus size: 61
45187825 GAATATTGTA
* * *
45187835 ATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTTTTGGATTAAT
1 ATTTTGTATGAATATTGTAATTATTTTATAATGAAATTTGTATTTATAATTTTGGATGAAT
* *
45187896 ATTTTGTATGAATATTGTAATT-TTTTGT-ATG-AATATTGTAATATTATAATTTTGTATGAAT
1 ATTTTGTATGAATATTGTAATTATTTTATAATGAAAT-TTGT-AT-TTATAATTTTGGATGAAT
45187957 ATT
1 ATT
45187960 GTAATTTTGT
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
58 3 0.05
59 6 0.11
60 7 0.12
61 40 0.71
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (61 bp):
ATTTTGTATGAATATTGTAATTATTTTATAATGAAATTTGTATTTATAATTTTGGATGAAT
Found at i:45188031 original size:21 final size:21
Alignment explanation
Indices: 45187892--45187983 Score: 107
Period size: 21 Copynumber: 4.2 Consensus size: 21
45187882 AGTTTTGGAT
*
45187892 TAATATTTTGTATGAATATTG
1 TAATTTTTTGTATGAATATTG
45187913 TAATTTTTTGTATGAATATTG
1 TAATTTTTTGTATGAATATTG
45187934 TAATATTATAATTTTGTATGAATATTG
1 T-A-A-T-T--TTTTGTATGAATATTG
45187961 TAA--TTTTGTATGAATATTG
1 TAATTTTTTGTATGAATATTG
45187980 TAAT
1 TAAT
45187984 GTCGGGATAT
Statistics
Matches: 63, Mismatches: 1, Indels: 15
0.80 0.01 0.19
Matches are distributed among these distances:
19 19 0.30
21 21 0.33
22 1 0.02
23 1 0.02
24 1 0.02
25 2 0.03
26 1 0.02
27 17 0.27
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (21 bp):
TAATTTTTTGTATGAATATTG
Found at i:45188034 original size:175 final size:173
Alignment explanation
Indices: 45187826--45188158 Score: 564
Period size: 175 Copynumber: 1.9 Consensus size: 173
45187816 GGCGCCAATG
45187826 AATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTTTTGGA
1 AATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTTTTGGA
*
45187891 TTAATATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAA-TAT-TAT-AATTTTGTAT
66 TTAATATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTATGTATGAATATTG--T
*
45187953 GAATATTGTAATTTTGTATGAATATTGTAATGTCGGGATATATTGT
129 -AATATTATAATTTTGTATGAATATTGTAATGTCGGGATATATTGT
45187999 AATATTGTAATTTTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTTTTG
1 AATATTGTAA--TTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTTTTG
* *
45188064 GATTAGTATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTGTATGAATATTGT
64 GATTAATATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTATGTATGAATATTGT
45188129 AATATTATAATTTTGTATGAATATTGTAAT
129 AATATTATAATTTTGTATGAATATTGTAAT
45188159 ATTGTAATTT
Statistics
Matches: 151, Mismatches: 4, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
173 10 0.07
175 129 0.85
176 3 0.02
177 3 0.02
178 6 0.04
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.53
Consensus pattern (173 bp):
AATATTGTAATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTTTTGGA
TTAATATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTATGTATGAATATTGTAA
TATTATAATTTTGTATGAATATTGTAATGTCGGGATATATTGT
Found at i:45188057 original size:114 final size:108
Alignment explanation
Indices: 45187892--45188242 Score: 315
Period size: 114 Copynumber: 3.3 Consensus size: 108
45187882 AGTTTTGGAT
* *
45187892 TAATATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAAT
1 TAATATTTTGTATGAATATTGTAATTTTTTATATAAATATTGTAATATTATAATTTTG---G-AT
*
45187957 ATTGTAATTTTGTATGAATATTGTAATGTCGGGATATATTGTAATATTG
62 -TAGT-ATTTTGTATGAATATTGTAATGTCGGGATATATTGTAATATTG
* *
45188006 TAATTTTTTGTATGAATATTGTAATTATTTTATAATTAAAT-TTGT-AT-TTATAGTTTTGGATT
1 TAATATTTTGTATGAATATTGTAATT-TTTTAT-A-TAAATATTGTAATATTATAATTTTGGATT
*** *
45188068 AGTATTTTGTATGAATATTGTAAT-T--TTTTGTA-TG-AATATTG
63 AGTATTTTGTATGAATATTGTAATGTCGGGATATATTGTAATATTG
* * ** * * *
45188109 T-A-ATTTTGTATGAATATTGTAATATTATA-AT-TTTGTATG-AATATTGTAATATT-G--TA-
1 TAATATTTTGTATGAATATTGTAATTTTTTATATAAATAT-TGTAATATTATAATTTTGGATTAG
45188165 -ATTTTGTATGAATATTGTAATGTCGGGATATATTGTAATATTG
65 TATTTTGTATGAATATTGTAATGTCGGGATATATTGTAATATTG
*
45188208 TAATTTTTTTGTATGAATATTGTAATTATTTTATA
1 TAA-TATTTTGTATGAATATTGTAATT-TTTTATA
45188243 ATTAATTTGT
Statistics
Matches: 196, Mismatches: 24, Indels: 44
0.74 0.09 0.17
Matches are distributed among these distances:
94 21 0.11
95 1 0.01
96 3 0.02
97 5 0.03
98 8 0.04
99 15 0.08
100 5 0.03
101 20 0.10
102 21 0.11
103 12 0.06
104 3 0.02
105 3 0.02
107 1 0.01
108 21 0.11
109 3 0.02
110 2 0.01
111 1 0.01
114 35 0.18
115 7 0.04
116 5 0.03
117 4 0.02
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.53
Consensus pattern (108 bp):
TAATATTTTGTATGAATATTGTAATTTTTTATATAAATATTGTAATATTATAATTTTGGATTAGT
ATTTTGTATGAATATTGTAATGTCGGGATATATTGTAATATTG
Found at i:45188086 original size:82 final size:82
Alignment explanation
Indices: 45187823--45188113 Score: 324
Period size: 82 Copynumber: 3.4 Consensus size: 82
45187813 AGAGGCGCCA
45187823 ATGAATATTGTAA--TTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTT
1 ATGAATATTGTAATTTTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTT
*
45187886 TTGGATTAATATTTTGT
66 TTGGATTAGTATTTTGT
* **
45187903 ATGAATATTGTAATTTTTTGTATGAATATTGTAA-TATTATAATTTTGTATGAATATTGTAATTT
1 ATGAATATTGTAATTTTTTGTATGAATATTGTAATTATT-TTATAAT-TA--AAT-TTGT-ATTT
* * * * *
45187967 -T-G-TATGAATATTGTAATGTCGGGATAT
60 ATAGTTTTGGAT-TAGT-AT-T----TTGT
45187994 ATTGTAATATTGTAATTTTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAG
1 A-TG-AATATTGTAATTTTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAG
45188059 TTTTGGATTAGTATTTTGT
64 TTTTGGATTAGTATTTTGT
45188078 ATGAATATTGTAATTTTTTGTATGAATATTGTAATT
1 ATGAATATTGTAATTTTTTGTATGAATATTGTAATT
45188114 TTGTATGAAT
Statistics
Matches: 173, Mismatches: 17, Indels: 40
0.75 0.07 0.17
Matches are distributed among these distances:
80 13 0.08
81 4 0.02
82 56 0.32
83 4 0.02
84 8 0.05
85 6 0.03
86 7 0.04
87 5 0.03
88 5 0.03
89 7 0.04
90 7 0.04
91 8 0.05
92 4 0.02
93 35 0.20
94 4 0.02
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (82 bp):
ATGAATATTGTAATTTTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTT
TTGGATTAGTATTTTGT
Found at i:45188132 original size:8 final size:8
Alignment explanation
Indices: 45188102--45188211 Score: 58
Period size: 8 Copynumber: 12.4 Consensus size: 8
45188092 TTTTTGTATG
45188102 AATATTGT
1 AATATTGT
*
45188110 AATTTTGTAT
1 AATATTG--T
45188120 GAATATTGT
1 -AATATTGT
*
45188129 AATATTAT
1 AATATTGT
*
45188137 AATTTTGTAT
1 AATATTG--T
45188147 GAATATTGT
1 -AATATTGT
45188156 AATATTGT
1 AATATTGT
*
45188164 AATTTTGTAT
1 AATATTG--T
45188174 GAATATTGT
1 -AATATTGT
* * *
45188183 AATGTCGGG
1 AATAT-TGT
45188192 ATATATTGT
1 A-ATATTGT
45188201 AATATTGT
1 AATATTGT
45188209 AAT
1 AAT
45188212 TTTTTTGTAT
Statistics
Matches: 77, Mismatches: 14, Indels: 22
0.68 0.12 0.19
Matches are distributed among these distances:
8 46 0.60
9 7 0.09
10 6 0.08
11 18 0.23
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.49
Consensus pattern (8 bp):
AATATTGT
Found at i:45188133 original size:27 final size:27
Alignment explanation
Indices: 45188081--45188185 Score: 159
Period size: 27 Copynumber: 4.1 Consensus size: 27
45188071 ATTTTGTATG
45188081 AATATTGTAATTTT-T-TG--TA-TG-
1 AATATTGTAATTTTGTATGAATATTGT
45188102 AATATTGTAATTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGT
*
45188129 AATATTATAATTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGT
45188156 AATATTGTAATTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGT
45188183 AAT
1 AAT
45188186 GTCGGGATAT
Statistics
Matches: 76, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
21 14 0.18
22 1 0.01
23 2 0.03
25 2 0.03
26 2 0.03
27 55 0.72
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.52
Consensus pattern (27 bp):
AATATTGTAATTTTGTATGAATATTGT
Found at i:45188252 original size:22 final size:22
Alignment explanation
Indices: 45188200--45188252 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
45188190 GGATATATTG
* *
45188200 TAATATTGTAATTTTTTTGTAT
1 TAATATTGTAATTATTTTATAT
*
45188222 GAATATTGTAATTATTTTATAAT
1 TAATATTGTAATTATTTTAT-AT
45188245 TAAT-TTGT
1 TAATATTGT
45188253 TAGTAATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.58
Consensus pattern (22 bp):
TAATATTGTAATTATTTTATAT
Found at i:45188308 original size:60 final size:60
Alignment explanation
Indices: 45188227--45188348 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 60
45188217 TGTATGAATA
* * * * *
45188227 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
*
45188287 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAGTTGTTGTGT
1 TTGTAATTATTTTAAAA-TTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
45188347 TT
1 TT
45188349 AGTTTAATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
59 6 0.11
60 49 0.89
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (60 bp):
TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:45188426 original size:38 final size:38
Alignment explanation
Indices: 45188381--45188462 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
45188371 CATATAAAGT
45188381 TTATAAAAAAATTAAAAATCATCTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATCTTATTAAAAGTTTAA
*
45188419 TTATAAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATCTTATTAAAAGTTTAA
45188457 TTATAA
1 TTATAA
45188463 CTGACTTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATCATCTTATTAAAAGTTTAA
Found at i:45188540 original size:15 final size:15
Alignment explanation
Indices: 45188499--45188540 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
45188489 GTTAACTAAT
*
45188499 TTAATTTTTATATAA
1 TTAAATTTTATATAA
*
45188514 TGTAACTTTTATATAA
1 T-TAAATTTTATATAA
45188530 TTAAATTTTAT
1 TTAAATTTTAT
45188541 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTATATAA
Found at i:45188700 original size:21 final size:21
Alignment explanation
Indices: 45188669--45188853 Score: 119
Period size: 21 Copynumber: 8.2 Consensus size: 21
45188659 AATTAATTAT
45188669 AAAATAATTACAATATTCATAC
1 AAAA-AATTACAATATTCATAC
45188691 AAAAAATTACAATATTACAATATATC
1 AAAAAATTACAATATT-C---ATA-C
*** *
45188717 CCGACATTACAATATTCATAC
1 AAAAAATTACAATATTCATAC
45188738 ---AAATTACAATATTACAATATTC
1 AAAAAATTACAATATT-C-ATA--C
*
45188760 ATACAAAATTATAATATTACAATATTC
1 A-A-AAAATTACAATATT-C-ATA--C
45188787 ATAAAAAATTACAATATTCAT--
1 --AAAAAATTACAATATTCATAC
*
45188808 ATAAAATTACAATATTCATAC
1 AAAAAATTACAATATTCATAC
45188829 AAAAAATTACAATATTCATAC
1 AAAAAATTACAATATTCATAC
45188850 AAAA
1 AAAA
45188854 TACTAATCTA
Statistics
Matches: 136, Mismatches: 9, Indels: 37
0.75 0.05 0.20
Matches are distributed among these distances:
18 12 0.09
19 19 0.14
20 3 0.02
21 37 0.27
22 9 0.07
25 6 0.04
26 14 0.10
27 34 0.25
28 1 0.01
29 1 0.01
ACGTcount: A:0.54, C:0.14, G:0.01, T:0.32
Consensus pattern (21 bp):
AAAAAATTACAATATTCATAC
Found at i:45188709 original size:8 final size:8
Alignment explanation
Indices: 45188696--45188785 Score: 56
Period size: 8 Copynumber: 10.4 Consensus size: 8
45188686 CATACAAAAA
45188696 ATTACAAT
1 ATTACAAT
45188704 ATTACAAT
1 ATTACAAT
* * *
45188712 ATATCCCGAC
1 AT-T-ACAAT
45188722 ATTACAAT
1 ATTACAAT
45188730 ATTCATACAA-
1 A-T--TACAAT
45188740 ATTACAAT
1 ATTACAAT
45188748 ATTACAAT
1 ATTACAAT
*
45188756 ATTCATACAAA
1 A-T--TACAAT
*
45188767 ATTATAAT
1 ATTACAAT
45188775 ATTACAAT
1 ATTACAAT
45188783 ATT
1 ATT
45188786 CATAAAAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
7 5 0.08
8 36 0.57
9 5 0.08
10 6 0.10
11 11 0.17
ACGTcount: A:0.48, C:0.16, G:0.01, T:0.36
Consensus pattern (8 bp):
ATTACAAT
Found at i:45188743 original size:65 final size:66
Alignment explanation
Indices: 45188674--45188844 Score: 202
Period size: 71 Copynumber: 2.5 Consensus size: 66
45188664 ATTATAAAAT
*** *
45188674 AATTACAATATTCATACAAAAAATTACAATATTACAATATATC-CCGACATTACAATATTCATA-
1 AATTACAATATTCATACAAAAAATTACAATATTACAATAT-TCAAAAAAATTACAATATTCATAT
*
45188737 CA
65 AA
*
45188739 AATTACAATATTACAATATTCATACAAAATTATAATATTACAATATTCATAAAAAATTACAATAT
1 AATTACAATATT-C-ATA--CA-A-AAAATTACAATATTACAATATTCA-AAAAAATTACAATAT
45188804 TCATATAA
59 TCATATAA
45188812 AATTACAATATTCATACAAAAAATTACAATATT
1 AATTACAATATTCATACAAAAAATTACAATATT
45188845 CATACAAAAT
Statistics
Matches: 90, Mismatches: 7, Indels: 16
0.80 0.06 0.14
Matches are distributed among these distances:
65 12 0.13
66 1 0.01
67 16 0.18
68 1 0.01
69 4 0.04
70 3 0.03
71 23 0.26
72 17 0.19
73 13 0.14
ACGTcount: A:0.52, C:0.14, G:0.01, T:0.33
Consensus pattern (66 bp):
AATTACAATATTCATACAAAAAATTACAATATTACAATATTCAAAAAAATTACAATATTCATATA
A
Found at i:45188770 original size:19 final size:19
Alignment explanation
Indices: 45188722--45188927 Score: 128
Period size: 19 Copynumber: 10.7 Consensus size: 19
45188712 ATATCCCGAC
45188722 ATTACAATATTCATAC-AA
1 ATTACAATATTCATACAAA
45188740 ATTACAATA-T--TACAATA
1 ATTACAATATTCATACAA-A
* * *
45188757 TTCATACAAAATT-AT--AAT
1 AT--TACAATATTCATACAAA
*
45188775 ATTACAATATTCATAAAAA
1 ATTACAATATTCATACAAA
*
45188794 ATTACAATATTCATATAAA
1 ATTACAATATTCATACAAA
45188813 ATTACAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
45188834 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
* * *
45188853 A-TACTAAT-CTAAAACTATAA
1 ATTAC-AATATTCATAC-A-AA
*
45188873 A-TACAAATTTAATT-ATAAAATA
1 ATTAC-AA--T-ATTCATACAA-A
*
45188895 ATTACAATATTAATACAAA
1 ATTACAATATTCATACAAA
45188914 ATTACAATATTCAT
1 ATTACAATATTCAT
45188928 TGGCGCCTCT
Statistics
Matches: 150, Mismatches: 17, Indels: 41
0.72 0.08 0.20
Matches are distributed among these distances:
15 3 0.02
16 9 0.06
17 5 0.03
18 17 0.11
19 68 0.45
20 15 0.10
21 21 0.14
22 6 0.04
23 5 0.03
24 1 0.01
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:45188776 original size:27 final size:27
Alignment explanation
Indices: 45188722--45188804 Score: 141
Period size: 27 Copynumber: 3.1 Consensus size: 27
45188712 ATATCCCGAC
45188722 ATTACAATATTCATAC-AAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
*
45188748 ATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTACAAT
*
45188775 ATTACAATATTCATAAAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
45188802 ATT
1 ATT
45188805 CATATAAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 16 0.30
27 37 0.70
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTACAAT
Found at i:45188844 original size:40 final size:38
Alignment explanation
Indices: 45188769--45188854 Score: 136
Period size: 40 Copynumber: 2.2 Consensus size: 38
45188759 CATACAAAAT
*
45188769 TATAATATTACAATATTCATAAAAAATTACAATATTCA
1 TATAAAATTACAATATTCATAAAAAATTACAATATTCA
45188807 TATAAAATTACAATATTCATACAAAAAATTACAATATTCA
1 TATAAAATTACAATATTCAT--AAAAAATTACAATATTCA
*
45188847 TACAAAAT
1 TATAAAAT
45188855 ACTAATCTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
38 19 0.43
40 25 0.57
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.34
Consensus pattern (38 bp):
TATAAAATTACAATATTCATAAAAAATTACAATATTCA
Found at i:45189679 original size:20 final size:20
Alignment explanation
Indices: 45189654--45189699 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
45189644 GTTGTTGCTA
*
45189654 TGTTTTGCTATTGTTTCCAC
1 TGTTTTGCTACTGTTTCCAC
* *
45189674 TGTTTTGTTACTGTTTCTAC
1 TGTTTTGCTACTGTTTCCAC
45189694 TGTTTT
1 TGTTTT
45189700 ATTGTTATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.09, C:0.15, G:0.15, T:0.61
Consensus pattern (20 bp):
TGTTTTGCTACTGTTTCCAC
Found at i:45189957 original size:21 final size:21
Alignment explanation
Indices: 45189912--45190008 Score: 96
Period size: 19 Copynumber: 4.7 Consensus size: 21
45189902 ATATTCAAGG
45189912 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
*
45189931 ATATGCAACCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
45189952 ATATGCAATCTTGGATATG--
1 ATATGCAATCTTAGATATGAT
45189971 ATATGCAATCTTGGAAGATATGAT
1 ATATGCAATCTT---AGATATGAT
* *
45189995 -TTTGTAATCTTAGA
1 ATATGCAATCTTAGA
45190009 GATTTAATTT
Statistics
Matches: 65, Mismatches: 6, Indels: 13
0.77 0.07 0.15
Matches are distributed among these distances:
19 30 0.46
20 3 0.05
21 17 0.26
22 6 0.09
23 9 0.14
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:45189985 original size:19 final size:19
Alignment explanation
Indices: 45189911--45189982 Score: 108
Period size: 19 Copynumber: 3.7 Consensus size: 19
45189901 AATATTCAAG
45189911 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
45189930 GATATGCAACCTTAGATAT
1 GATATGCAATCTTAGATAT
*
45189949 GATATATGCAATCTTGGATAT
1 G--ATATGCAATCTTAGATAT
45189970 GATATGCAATCTT
1 GATATGCAATCTT
45189983 GGAAGATATG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 31 0.65
21 17 0.35
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:45194886 original size:43 final size:43
Alignment explanation
Indices: 45194728--45194885 Score: 205
Period size: 43 Copynumber: 3.7 Consensus size: 43
45194718 TTTCTGATAA
*
45194728 GTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGACTT
1 GTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGACTT
45194771 GTGTTTTCGTGTAAGACCACGTCT-GAGACGTTGGCATCGACTT
1 GTGTTTTCGTGTAAGACCACGTCTAG-GACGTTGGCATCGACTT
** *
45194814 GTGTTTTCGTGTAAGACCTTGTCTAGGACAG-TGGCATTGA-TCT
1 GTGTTTTCGTGTAAGACCACGTCTAGGAC-GTTGGCATCGACT-T
* * *
45194857 GTGATTACATGTAAGACCACGTCTAGGAC
1 GTGTTTTCGTGTAAGACCACGTCTAGGAC
45194886 ATTGATATTG
Statistics
Matches: 103, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
42 2 0.02
43 99 0.96
44 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (43 bp):
GTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGACTT
Found at i:45195970 original size:22 final size:24
Alignment explanation
Indices: 45195944--45195987 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
45195934 AAAAAATATT
45195944 AAATAT-ATA-TTTTTTATTTTTA
1 AAATATAATAGTTTTTTATTTTTA
45195966 AAATATAATAGTTTTTTATTTT
1 AAATATAATAGTTTTTTATTTT
45195988 AAGTTTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATAATAGTTTTTTATTTTTA
Found at i:45196098 original size:9 final size:9
Alignment explanation
Indices: 45196084--45196111 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
45196074 TTTTGTTACA
45196084 ACAATTAAT
1 ACAATTAAT
45196093 ACAATTAAT
1 ACAATTAAT
45196102 ACAATTAAT
1 ACAATTAAT
45196111 A
1 A
45196112 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:45196133 original size:68 final size:68
Alignment explanation
Indices: 45196054--45196254 Score: 298
Period size: 59 Copynumber: 3.1 Consensus size: 68
45196044 TCAAGTTTGT
*
45196054 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
45196119 AAA
66 AAA
45196122 TTTACTAATCAAATGTTAGATTTTATT---AC-----A-ACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
45196178 AAA
66 AAA
*
45196181 TTTACTAATCAAATGTTAGATTGTATTACAACAATTAATACAATTAAT--AATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
45196244 AAT
66 AAA
45196247 TTTACTAA
1 TTTACTAA
45196255 CAATTAATTT
Statistics
Matches: 121, Mismatches: 3, Indels: 20
0.84 0.02 0.14
Matches are distributed among these distances:
59 55 0.45
60 1 0.01
62 2 0.02
65 2 0.02
66 25 0.21
67 1 0.01
68 35 0.29
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.41
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:45196264 original size:16 final size:16
Alignment explanation
Indices: 45196243--45196284 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
45196233 AATAATTTGA
*
45196243 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
45196259 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
45196275 TAGTTTTAAT
1 TAATTTTAAT
45196285 TTTATTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:45196315 original size:22 final size:23
Alignment explanation
Indices: 45196258--45196315 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
45196248 TTACTAACAA
* *
45196258 TTAATTTTAA-TAACAATTAGTT
1 TTAATTTTAATTAACAAATAATT
*
45196280 TTAATTTTATTTAA-AAATAATT
1 TTAATTTTAATTAACAAATAATT
45196302 TTAATTTTAATTAA
1 TTAATTTTAATTAA
45196316 GAACGGGCCG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 28 0.90
23 3 0.10
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
TTAATTTTAATTAACAAATAATT
Found at i:45197901 original size:63 final size:63
Alignment explanation
Indices: 45197766--45197886 Score: 161
Period size: 63 Copynumber: 1.9 Consensus size: 63
45197756 GAGGGAAGCA
* ** * **
45197766 TGCTTGAAAACGCATTTCAGAATATGCATTTTCATCGAATAACAATAATGAAAGCTTCAGAGG
1 TGCTTGAAAACGCATTTCAGAAGACACATTTTCATCAAATAACAATAATGAAAGAGTCAGAGG
* * *
45197829 TGCTTGAAAATGCATTTCAGCAGACACATTTTCATCAAATAATAATAATGAAAGAGTC
1 TGCTTGAAAACGCATTTCAGAAGACACATTTTCATCAAATAACAATAATGAAAGAGTC
45197887 TTTTGTGCTT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 49 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (63 bp):
TGCTTGAAAACGCATTTCAGAAGACACATTTTCATCAAATAACAATAATGAAAGAGTCAGAGG
Found at i:45199693 original size:51 final size:51
Alignment explanation
Indices: 45199610--45199726 Score: 198
Period size: 51 Copynumber: 2.3 Consensus size: 51
45199600 CGGATCACAT
*
45199610 TTATCACTTGTCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTAATCAAATAAGTGTAGCTAAAGCTACCAC
* * *
45199661 TTATCACTTGTCACTTGTCACTAATTAGATAAGTGTAGCTAAAGTTACCAC
1 TTATCACTTGTCACTTGTCACTAATCAAATAAGTGTAGCTAAAGCTACCAC
45199712 TTATCACTTGTCACT
1 TTATCACTTGTCACT
45199727 GATCAGAAGT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTAATCAAATAAGTGTAGCTAAAGCTACCAC
Found at i:45206630 original size:21 final size:20
Alignment explanation
Indices: 45206588--45206630 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45206578 TGAAATCATT
*
45206588 AAAAACTTTGGTAAAGTGAC
1 AAAAACTTTGGTAAAGTAAC
*
45206608 AAAAATTTTGGTAAAGGTAAC
1 AAAAACTTTGGTAAA-GTAAC
45206629 AA
1 AA
45206631 TTTTAGTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.26
Consensus pattern (20 bp):
AAAAACTTTGGTAAAGTAAC
Found at i:45206704 original size:20 final size:20
Alignment explanation
Indices: 45206651--45206708 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
45206641 TGTTAAGATA
** *
45206651 TGGTAAAGGGTTAGAAATTT
1 TGGTAAAGTCTTATAAATTT
45206671 TGGTAATA-TCTTATAAATTT
1 TGGTAA-AGTCTTATAAATTT
*
45206691 TGGTAAAGTTTTATAAAT
1 TGGTAAAGTCTTATAAAT
45206709 ATTGATAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (20 bp):
TGGTAAAGTCTTATAAATTT
Found at i:45206844 original size:40 final size:39
Alignment explanation
Indices: 45206661--45207316 Score: 207
Period size: 40 Copynumber: 16.3 Consensus size: 39
45206651 TGGTAAAGGG
* * * *
45206661 TTAGAAATTTTGGTAATATC-TTATAAATTTTGGTAAAGTT
1 TTAGAAATTTTGATAA-ATCGTTAGATATTTTGGTAAA-TC
* * ** *
45206701 TTATAAATATTGAT-AATCAATAGAAATTTTGGTAAATC
1 TTAGAAATTTTGATAAATCGTTAGATATTTTGGTAAATC
* ** **
45206739 TTTAAAAAAATTG-TAAAT-GTTAGATATAATGGTAAATC
1 -TTAGAAATTTTGATAAATCGTTAGATATTTTGGTAAATC
* * * *
45206777 TTTGGAAATATTGA-ATAACCGTAAGATATTTTGGTAAATTC
1 -TTAGAAATTTTGATA-AATCGTTAGATATTTTGGTAAA-TC
* * **
45206818 TTAAAAATTTTGATAAATCGTTAGATATATTAATAAATC
1 TTAGAAATTTTGATAAATCGTTAGATATTTTGGTAAATC
* * * *
45206857 GTTA-AATATATT-AGTAAGTCCTTAGATATTTTGGTAAAGTG
1 -TTAGAA-ATTTTGA-TAAATCGTTAGATATTTTGGTAAA-TC
* * ** * *
45206898 ATAGAAATTTTGGT-AATTTTTAAGACTTGGTATAAGGTTTAGAAAAT-
1 TTAGAAATTTTGATAAATCGTT-AGA-----TAT----TTTGGTAAATC
* * *
45206945 TTAGAAATATTTG-TAAAAAC-TTGGAAATTTTGGTAAAGTC
1 TTAGAAAT-TTTGAT-AAATCGTTAGATATTTTGGTAAA-TC
* * * * * * * * *
45206985 TCATAAATATTGGTAAATTGATAGAAATTTTAGTAAAAC
1 TTAGAAATTTTGATAAATCGTTAGATATTTTGGTAAATC
* * *
45207024 ATTAGAAATTTTGATAAATTGTTAGATATCTTGATAAATTC
1 -TTAGAAATTTTGATAAATCGTTAGATATTTTGGTAAA-TC
* * *
45207065 TTAGAAATTTTGATAAATTGTTAGATATATTGGTAAATTG
1 TTAGAAATTTTGATAAATCGTTAGATATTTTGGTAAA-TC
* * * ** *
45207105 TTAGATA-TTTGATAAATTCTTTA-AAATACTGGTAAACC
1 TTAGAAATTTTGATAAA-TCGTTAGATATTTTGGTAAATC
* * * *
45207143 ATTATATATATT-ATTAAATCGTTAGATATTTTGGTAAACC
1 -TTAGAAATTTTGA-TAAATCGTTAGATATTTTGGTAAATC
* * *
45207183 GATAG--ATTTCCTCGA-AAATCGATAGATATTTTTGATAAATCC
1 -TTAGAAATTT--T-GATAAATCGTTAGATA-TTTTGGTAAAT-C
* * * *
45207225 TTAGAAATATT-AGCAAGTCGTTAGATATATTGGTAAATCC
1 TTAGAAATTTTGA-TAAATCGTTAGATATTTTGGTAAAT-C
*
45207265 TTA-AATTTTTTGATAAATCGTTAGATATTTTGGTAAAGTC
1 TTAGAA-ATTTTGATAAATCGTTAGATATTTTGGTAAA-TC
*
45207305 ATAGAAATTTTG
1 TTAGAAATTTTG
45207317 GTAATTGTTA
Statistics
Matches: 459, Mismatches: 105, Indels: 104
0.69 0.16 0.16
Matches are distributed among these distances:
38 41 0.09
39 83 0.18
40 264 0.58
41 35 0.08
42 4 0.01
43 3 0.01
45 3 0.01
47 10 0.02
48 7 0.02
49 9 0.02
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.41
Consensus pattern (39 bp):
TTAGAAATTTTGATAAATCGTTAGATATTTTGGTAAATC
Found at i:45206853 original size:20 final size:20
Alignment explanation
Indices: 45206830--45206885 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
45206820 AAAAATTTTG
45206830 ATAAATCGTTAGATATATTA
1 ATAAATCGTTAGATATATTA
*
45206850 ATAAATCGTTAAATATATTA
1 ATAAATCGTTAGATATATTA
* * *
45206870 GTAAGTCCTTAGATAT
1 ATAAATCGTTAGATAT
45206886 TTTGGTAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (20 bp):
ATAAATCGTTAGATATATTA
Found at i:45206893 original size:20 final size:20
Alignment explanation
Indices: 45206800--45206894 Score: 73
Period size: 20 Copynumber: 4.8 Consensus size: 20
45206790 AATAACCGTA
*
45206800 AGATATTTTGGTAAATTCTT
1 AGATATTTTGGTAAATCCTT
* * * *
45206820 AAAAATTTTGATAAATCGTT
1 AGATATTTTGGTAAATCCTT
* ** *
45206840 AGATATATTAATAAATCGTT
1 AGATATTTTGGTAAATCCTT
* * * *
45206860 AAATATATTAGTAAGTCCTT
1 AGATATTTTGGTAAATCCTT
45206880 AGATATTTTGGTAAA
1 AGATATTTTGGTAAA
45206895 GTGATAGAAA
Statistics
Matches: 58, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.40, C:0.05, G:0.13, T:0.42
Consensus pattern (20 bp):
AGATATTTTGGTAAATCCTT
Found at i:45207152 original size:59 final size:59
Alignment explanation
Indices: 45207038--45207173 Score: 157
Period size: 59 Copynumber: 2.3 Consensus size: 59
45207028 GAAATTTTGA
** *** *
45207038 TAAATTGTTAGATATCTTGATAAATTCTTAGAAATTTTGATAAATTGTTAGATATATTGG
1 TAAATTGTTAGATAT-TTGATAAATTCTTAGAAATACTGATAAACCATTAGATATATTAG
* * *
45207098 TAAATTGTTAGATATTTGATAAATTCTTTA-AAATACTGGTAAACCATTATATATATTAT
1 TAAATTGTTAGATATTTGATAAATTC-TTAGAAATACTGATAAACCATTAGATATATTAG
*
45207157 TAAATCGTTAGATATTT
1 TAAATTGTTAGATATTT
45207174 TGGTAAACCG
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
59 47 0.72
60 18 0.28
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (59 bp):
TAAATTGTTAGATATTTGATAAATTCTTAGAAATACTGATAAACCATTAGATATATTAG
Found at i:45207180 original size:20 final size:20
Alignment explanation
Indices: 45206994--45207320 Score: 151
Period size: 20 Copynumber: 16.4 Consensus size: 20
45206984 CTCATAAATA
* * *
45206994 TTGGTAAATTGATAGAAATT
1 TTGGTAAATCGTTAGATATT
* * * *
45207014 TTAGTAAAACATTAGAAATT
1 TTGGTAAATCGTTAGATATT
* * *
45207034 TTGATAAATTGTTAGATATC
1 TTGGTAAATCGTTAGATATT
* *
45207054 TTGATAAATTC-TTAGAAATT
1 TTGGTAAA-TCGTTAGATATT
* * *
45207074 TTGATAAATTGTTAGATATA
1 TTGGTAAATCGTTAGATATT
*
45207094 TTGGTAAATTGTTAGATA-T
1 TTGGTAAATCGTTAGATATT
* * * *
45207113 TTGATAAATTCTTTA-AAATA
1 TTGGTAAA-TCGTTAGATATT
* * * * *
45207133 CTGGTAAACCATTATATATA
1 TTGGTAAATCGTTAGATATT
**
45207153 TTATTAAATCGTTAGATATT
1 TTGGTAAATCGTTAGATATT
* *
45207173 TTGGTAAACCGATAGAT-TT
1 TTGGTAAATCGTTAGATATT
* * * *
45207192 CCTCGAAAATCGATAGATATTT
1 -TTGGTAAATCGTTAGATA-TT
* * * *
45207214 TTGATAAATCCTTAGAAATA
1 TTGGTAAATCGTTAGATATT
* * * *
45207234 TTAGCAAGTCGTTAGATATA
1 TTGGTAAATCGTTAGATATT
* * *
45207254 TTGGTAAATCCTTAAATTTT
1 TTGGTAAATCGTTAGATATT
*
45207274 TTGATAAATCGTTAGATATT
1 TTGGTAAATCGTTAGATATT
* *
45207294 TTGGTAAAGTC-ATAGAAATT
1 TTGGTAAA-TCGTTAGATATT
45207314 TTGGTAA
1 TTGGTAA
45207321 TTGTTAAAAC
Statistics
Matches: 225, Mismatches: 73, Indels: 18
0.71 0.23 0.06
Matches are distributed among these distances:
19 16 0.07
20 193 0.86
21 14 0.06
22 2 0.01
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (20 bp):
TTGGTAAATCGTTAGATATT
Found at i:45207318 original size:60 final size:61
Alignment explanation
Indices: 45206994--45207320 Score: 174
Period size: 60 Copynumber: 5.5 Consensus size: 61
45206984 CTCATAAATA
* * * * *
45206994 TTGGTAAATT-GATAGAAATTTTAGTAAAACATTAGAA-ATTTTGATAAATTGTTAGATATC
1 TTGGTAAATTCGATAGAAATTTTGGTAAATCCTTA-AATATTTTGATAAATCGTTAGATATT
* * * ** * * * *
45207054 TTGATAAATTC-TTAGAAATTTTGATAAATTGTTAGATATATTGGTAAATTGTTAGATA-T
1 TTGGTAAATTCGATAGAAATTTTGGTAAATCCTTAAATATTTTGATAAATCGTTAGATATT
* ** ** * *
45207113 TTGATAAATTCTTTA-AAATACTGGTAAA-CCATTATATATATT-ATTAAATCGTTAGATATT
1 TTGGTAAATTCGATAGAAATTTTGGTAAATCC-TTAAATATTTTGA-TAAATCGTTAGATATT
* * * ** * * * *
45207173 TTGGTAAA-CCGATAG--ATTTCCTCGAAAATCGATAGATATTTTTGATAAATCCTTAGAAATA
1 TTGGTAAATTCGATAGAAATTT--TGGTAAATCCTTAAATA-TTTTGATAAATCGTTAGATATT
* * * * * * *
45207234 TTAG-CAAGTCGTTAGATATATTGGTAAATCCTTAAATTTTTTGATAAATCGTTAGATATT
1 TTGGTAAATTCGATAGAAATTTTGGTAAATCCTTAAATATTTTGATAAATCGTTAGATATT
*
45207294 TTGGTAAAGTC-ATAGAAATTTTGGTAA
1 TTGGTAAATTCGATAGAAATTTTGGTAA
45207321 TTGTTAAAAC
Statistics
Matches: 198, Mismatches: 53, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
58 2 0.01
59 48 0.24
60 103 0.52
61 41 0.21
62 1 0.01
63 3 0.02
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (61 bp):
TTGGTAAATTCGATAGAAATTTTGGTAAATCCTTAAATATTTTGATAAATCGTTAGATATT
Found at i:45207407 original size:20 final size:20
Alignment explanation
Indices: 45207384--45207485 Score: 82
Period size: 20 Copynumber: 5.1 Consensus size: 20
45207374 CTAAATATTA
*
45207384 GTAAAACGATAGAAATTTTG
1 GTAAATCGATAGAAATTTTG
* *
45207404 GTAACTC-ATTAGACATTTTG
1 GTAAATCGA-TAGAAATTTTG
**
45207424 GTAAATCTTTAGAAATTTTG
1 GTAAATCGATAGAAATTTTG
* * * *
45207444 GTAAATTGTTAGATATATTG
1 GTAAATCGATAGAAATTTTG
*
45207464 GTAAGAT-GATAAAAATTTTG
1 GTAA-ATCGATAGAAATTTTG
45207484 GT
1 GT
45207486 GTTTGTCAAG
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 62 0.95
21 2 0.03
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.39
Consensus pattern (20 bp):
GTAAATCGATAGAAATTTTG
Found at i:45207428 original size:40 final size:40
Alignment explanation
Indices: 45207378--45207485 Score: 108
Period size: 40 Copynumber: 2.7 Consensus size: 40
45207368 AATCTCCTAA
* *
45207378 ATATTAGTAAAACGATAGAAATTTTGGTAACTCATTAGAC
1 ATATTGGTAAAACGATAGAAATTTTGGTAAATCATTAGAC
* * ** ** *
45207418 ATTTTGGTAAATCTTTAGAAATTTTGGTAAATTGTTAGAT
1 ATATTGGTAAAACGATAGAAATTTTGGTAAATCATTAGAC
* * *
45207458 ATATTGGTAAGATGATAAAAATTTTGGT
1 ATATTGGTAAAACGATAGAAATTTTGGT
45207486 GTTTGTCAAG
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.40
Consensus pattern (40 bp):
ATATTGGTAAAACGATAGAAATTTTGGTAAATCATTAGAC
Found at i:45207552 original size:20 final size:19
Alignment explanation
Indices: 45207519--45207695 Score: 97
Period size: 20 Copynumber: 8.9 Consensus size: 19
45207509 TTTAGAAAAT
*
45207519 TAGAAATATCGGTAAAATCA
1 TAGAAATATTGGT-AAATCA
*
45207539 TAGAAATTTTGGTAAAGTTTCA
1 TAGAAATATTGGTAAA---TCA
*
45207561 T--AAATATTGGTAAATAGA
1 TAGAAATATTGGTAAAT-CA
* * *
45207579 TAGAAATTTTGGTAACTTA
1 TAGAAATATTGGTAAATCA
* * *
45207598 TTAGATATTTTGGTAAATCGT
1 -TAGAAATATTGGTAAATC-A
*
45207619 TAGAAATATTGGTAAATCGT
1 TAGAAATATTGGTAAATC-A
* *
45207639 TAGATATATTGGTAAATGCT
1 TAGAAATATTGGTAAAT-CA
* * * *
45207659 TATAAATTTTGATAAAGTCT
1 TAGAAATATTGGTAAA-TCA
*
45207679 TATAAATATTGGTAAAT
1 TAGAAATATTGGTAAAT
45207696 TGATATATTT
Statistics
Matches: 127, Mismatches: 20, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.01
18 2 0.02
19 5 0.04
20 113 0.89
21 2 0.02
22 4 0.03
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.39
Consensus pattern (19 bp):
TAGAAATATTGGTAAATCA
Found at i:45207582 original size:40 final size:39
Alignment explanation
Indices: 45207518--45207700 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 39
45207508 GTTTAGAAAA
* *
45207518 TTAGAAATATCGGTAAAATCATAGAAATTTTGGTAAAGT-
1 TTAGAAATATTGGT-AAATGATAGAAATTTTGGTAAAGTC
* ** *
45207557 TTCATAAATATTGGTAAATAGATAGAAATTTTGGTAACTTA
1 TT-AGAAATATTGGTAAAT-GATAGAAATTTTGGTAAAGTC
* * * *
45207598 TTAGATATTTTGGTAAATCGTTAGAAATATTGGTAAA-TC
1 TTAGAAATATTGGTAAAT-GATAGAAATTTTGGTAAAGTC
* * * *
45207637 GTTAGATATATTGGTAAATGCTTATAAATTTTGATAAAGTC
1 -TTAGAAATATTGGTAAATG-ATAGAAATTTTGGTAAAGTC
*
45207678 TTATAAATATTGGTAAATTGATA
1 TTAGAAATATTGGTAAA-TGATA
45207701 TATTTGTTAA
Statistics
Matches: 117, Mismatches: 20, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
39 8 0.07
40 103 0.88
41 6 0.05
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.39
Consensus pattern (39 bp):
TTAGAAATATTGGTAAATGATAGAAATTTTGGTAAAGTC
Found at i:45207612 original size:60 final size:60
Alignment explanation
Indices: 45207519--45207700 Score: 190
Period size: 60 Copynumber: 3.0 Consensus size: 60
45207509 TTTAGAAAAT
* *
45207519 TAGAAATATCGGTAAAATCA-TAGAAATTTTGGTAAAGT-TTCATAAATATTGGTAAATAGA
1 TAGAAATATTGGT-AAATGATTAGAAATTTTGGTAAAGTCTT-ATAAATATTGGTAAATAGA
* * * * * * *
45207579 TAGAAATTTTGGTAACTTATTAGATATTTTGGTAAA-TCGTTAGAAATATTGGTAAATCGT
1 TAGAAATATTGGTAAATGATTAGAAATTTTGGTAAAGTC-TTATAAATATTGGTAAATAGA
* * * * *
45207639 TAGATATATTGGTAAATGCTTATAAATTTTGATAAAGTCTTATAAATATTGGTAAATTGA
1 TAGAAATATTGGTAAATGATTAGAAATTTTGGTAAAGTCTTATAAATATTGGTAAATAGA
45207699 TA
1 TA
45207701 TATTTGTTAA
Statistics
Matches: 99, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
59 5 0.05
60 90 0.91
61 4 0.04
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.39
Consensus pattern (60 bp):
TAGAAATATTGGTAAATGATTAGAAATTTTGGTAAAGTCTTATAAATATTGGTAAATAGA
Found at i:45207702 original size:20 final size:20
Alignment explanation
Indices: 45207542--45207702 Score: 101
Period size: 20 Copynumber: 8.1 Consensus size: 20
45207532 AAAATCATAG
* *
45207542 AAATTTTGGTAAAGTT-TCAT
1 AAATATTGGTAAA-TTGTTAT
* * *
45207562 AAATATTGGTAAATAGATAG
1 AAATATTGGTAAATTGTTAT
* * * *
45207582 AAATTTTGGTAACTTATTAG
1 AAATATTGGTAAATTGTTAT
* * * *
45207602 ATATTTTGGTAAATCGTTAG
1 AAATATTGGTAAATTGTTAT
* *
45207622 AAATATTGGTAAATCGTTAG
1 AAATATTGGTAAATTGTTAT
*
45207642 ATATATTGGTAAA-TGCTTAT
1 AAATATTGGTAAATTG-TTAT
* * * *
45207662 AAATTTTGATAAAGTCTTAT
1 AAATATTGGTAAATTGTTAT
*
45207682 AAATATTGGTAAATTGATAT
1 AAATATTGGTAAATTGTTAT
45207702 A
1 A
45207703 TTTGTTAAAT
Statistics
Matches: 110, Mismatches: 28, Indels: 6
0.76 0.19 0.04
Matches are distributed among these distances:
19 2 0.02
20 107 0.97
21 1 0.01
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.41
Consensus pattern (20 bp):
AAATATTGGTAAATTGTTAT
Found at i:45214032 original size:19 final size:19
Alignment explanation
Indices: 45214008--45214046 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
45213998 TTTCGTAAAT
45214008 TATATAATGTA-TGATGAAA
1 TATAT-ATGTATTGATGAAA
*
45214027 TATATATTTATTGATGAAA
1 TATATATGTATTGATGAAA
45214046 T
1 T
45214047 GAGAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (19 bp):
TATATATGTATTGATGAAA
Found at i:45214289 original size:45 final size:46
Alignment explanation
Indices: 45214127--45214463 Score: 551
Period size: 46 Copynumber: 7.5 Consensus size: 46
45214117 TGATCAGTGA
*
45214127 CAAGTGACAAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
1 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
*
45214173 CAAGTGACAAAGTGATAAATGGTAGCTTTAGCTACACTTATCTGAT
1 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
* *
45214219 CAAGTGACAAAGTGATAGGTGGTAGCTTTAGCTACACTTATCTAAT
1 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
*
45214265 CAAGT-ACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGAT
1 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
*
45214309 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACTCTTATCTGAT
1 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
*
45214355 CAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGAT
1 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
*
45214400 CAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGAT
1 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
*
45214445 C-AGGGAC-AAGTGATAAGTG
1 CAAGTGACAAAGTGATAAGTG
45214464 ATCATACGTA
Statistics
Matches: 276, Mismatches: 13, Indels: 7
0.93 0.04 0.02
Matches are distributed among these distances:
43 12 0.04
44 27 0.10
45 102 0.37
46 135 0.49
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (46 bp):
CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGAT
Found at i:45214304 original size:136 final size:136
Alignment explanation
Indices: 45214127--45214460 Score: 557
Period size: 136 Copynumber: 2.5 Consensus size: 136
45214117 TGATCAGTGA
* *
45214127 CAAGTGACAAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAA
1 CAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAA
* *
45214192 TGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAGGTGGTAGCTTTAGCTACACT
65 TGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACT
45214257 TATCTAAT
129 TATCTAAT
*
45214265 CAAGT-ACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
1 CAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAAT
*
45214329 GGTAGCTTTAGCTACTCTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
66 GGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
*
45214394 TCTGAT
131 TCTAAT
*
45214400 CAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATC-AGGGAC-AAGTGATAA
1 CAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTGATAA
45214461 GTGATCATAC
Statistics
Matches: 187, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
134 9 0.05
135 27 0.14
136 127 0.68
137 19 0.10
138 5 0.03
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (136 bp):
CAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAAT
GGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
TCTAAT
Found at i:45217245 original size:91 final size:92
Alignment explanation
Indices: 45217090--45217304 Score: 252
Period size: 91 Copynumber: 2.3 Consensus size: 92
45217080 TGAACACTTC
* *** *
45217090 AGTTTATGGATGAACCACCAGTGTTTGTTGGTTAATACGCTGCTAGTAGGTTATGAATGCACAAC
1 AGTTTGTGGATGAACCACCAGTGTTTGCAAGTTAATACGCTGCCAGTAGGTTATGAATGCACAAC
* *
45217155 -CTCTTTGCACATAAAAGTTGTCAGTA
66 ACTATTTGCACATAAAAGCTGTCAGTA
* * * * *
45217181 AGTTTGTGGATGAACCACTAGCGTTTGCAAGTTAATATGTTGCCAGTAGGTTGTGAATGCACAAC
1 AGTTTGTGGATGAACCACCAGTGTTTGCAAGTTAATACGCTGCCAGTAGGTTATGAATGCACAAC
* * *
45217246 ATATGTATTTGCAGATAAAAGCTGTGAGTA
66 --A-CTATTTGCACATAAAAGCTGTCAGTA
*
45217276 AGTTTGTGGATAAACCACCAGTGTTTGCA
1 AGTTTGTGGATGAACCACCAGTGTTTGCA
45217305 GATTGTTAAA
Statistics
Matches: 102, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
91 55 0.54
95 47 0.46
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (92 bp):
AGTTTGTGGATGAACCACCAGTGTTTGCAAGTTAATACGCTGCCAGTAGGTTATGAATGCACAAC
ACTATTTGCACATAAAAGCTGTCAGTA
Found at i:45217474 original size:38 final size:39
Alignment explanation
Indices: 45217394--45217481 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 39
45217384 TACATAAAAC
* * *
45217394 AGTAGACATGCTTTAATATGTATTATGTTCAACAATAGT
1 AGTAGACATGCTTTAACATGTATTAGGTTCAACAATAAT
* * **
45217433 AGTAGACATGC-TTAACATGTATTCGGTTCTACGGTAAT
1 AGTAGACATGCTTTAACATGTATTAGGTTCAACAATAAT
*
45217471 AGTAGGCATGC
1 AGTAGACATGC
45217482 AATCGATAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
38 30 0.73
39 11 0.27
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (39 bp):
AGTAGACATGCTTTAACATGTATTAGGTTCAACAATAAT
Found at i:45225688 original size:31 final size:30
Alignment explanation
Indices: 45225649--45225712 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
45225639 TTTTCATAAA
*
45225649 TTTAGAATTTAGT-CTTTGTACTTTTTTATT
1 TTTAGAATTTAGTCCTTT-TACTTTTTTAGT
*
45225679 TTTAGGAATTTTGTCCTTTTACTTTTTTAGT
1 TTTA-GAATTTAGTCCTTTTACTTTTTTAGT
45225710 TTT
1 TTT
45225713 CAAAATTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 4 0.13
31 22 0.73
32 4 0.13
ACGTcount: A:0.17, C:0.08, G:0.11, T:0.64
Consensus pattern (30 bp):
TTTAGAATTTAGTCCTTTTACTTTTTTAGT
Found at i:45233923 original size:17 final size:18
Alignment explanation
Indices: 45233901--45233938 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
45233891 TTTTTGAATA
45233901 TTTGTA-TTTTGGAAC-TT
1 TTTGTACTTTT-GAACATT
45233918 TTTGTACTTTTGAACATT
1 TTTGTACTTTTGAACATT
45233936 TTT
1 TTT
45233939 CTGAATAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.18, C:0.08, G:0.13, T:0.61
Consensus pattern (18 bp):
TTTGTACTTTTGAACATT
Found at i:45237476 original size:29 final size:30
Alignment explanation
Indices: 45237420--45237478 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
45237410 CAAGAATTTG
*
45237420 ATAAAATAAAAATTTTATATATAAAATTAC
1 ATAAAATAAAAATTTTATATACAAAATTAC
*
45237450 ATAAAATAAAAA-TTTATATACACAATTAC
1 ATAAAATAAAAATTTTATATACAAAATTAC
45237479 GCGTTAAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (30 bp):
ATAAAATAAAAATTTTATATACAAAATTAC
Found at i:45240214 original size:24 final size:24
Alignment explanation
Indices: 45240167--45240215 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
45240157 GATCTTGAAA
* *
45240167 ACTTAGGTTTAAGGGTAAGTTTGG
1 ACTTAGGTTTAAGAGTAAGCTTGG
*
45240191 ACTTAGGTTTAAGAGTAGGCTTGG
1 ACTTAGGTTTAAGAGTAAGCTTGG
45240215 A
1 A
45240216 TGGATGACGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.06, G:0.33, T:0.35
Consensus pattern (24 bp):
ACTTAGGTTTAAGAGTAAGCTTGG
Done.