Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 169 of 214
Found at i:49732537 original size:18 final size:17
Alignment explanation
Indices: 49732511--49732544 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
49732501 TTTTATTTCT
49732511 TAAAAAAATAAATAAAAA
1 TAAAAAAATAAA-AAAAA
*
49732529 TAAATAAATAAAAAAA
1 TAAAAAAATAAAAAAA
49732545 TGGTCAACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (17 bp):
TAAAAAAATAAAAAAAA
Found at i:49737147 original size:15 final size:15
Alignment explanation
Indices: 49737127--49737183 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
49737117 TTAGTTTATT
*
49737127 TAATATATAACAATA
1 TAATATATAATAATA
49737142 TAATATA-ATATAATA
1 TAATATATA-ATAATA
* *
49737157 TATTATATAATAAAA
1 TAATATATAATAATA
49737172 TAATATACTAAT
1 TAATATA-TAAT
49737184 GTTTAAAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 1 0.03
15 29 0.83
16 5 0.14
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.39
Consensus pattern (15 bp):
TAATATATAATAATA
Found at i:49737148 original size:5 final size:5
Alignment explanation
Indices: 49737138--49737178 Score: 50
Period size: 5 Copynumber: 8.2 Consensus size: 5
49737128 AATATATAAC
49737138 AATAT AATAT AATAT AATAT ATTATAT AATA- AA-AT AATAT A
1 AATAT AATAT AATAT AATAT A--ATAT AATAT AATAT AATAT A
49737179 CTAATGTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
3 1 0.03
4 4 0.12
5 22 0.69
7 5 0.16
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:49737163 original size:20 final size:20
Alignment explanation
Indices: 49737139--49737178 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
49737129 ATATATAACA
49737139 ATATAATATAATATAATATATT
1 ATATAATA-AA-ATAATATATT
49737161 ATATAATAAAATAATATA
1 ATATAATAAAATAATATA
49737179 CTAATGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 2 0.11
22 8 0.44
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATATAATAAAATAATATATT
Found at i:49737164 original size:17 final size:17
Alignment explanation
Indices: 49737127--49737178 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
49737117 TTAGTTTATT
*
49737127 TAATAT-ATAACA-ATA
1 TAATATAATAAAATATA
*
49737142 TAATATAATATAATATA
1 TAATATAATAAAATATA
*
49737159 TTATATAATAAAATAATA
1 TAATATAATAAAAT-ATA
49737177 TA
1 TA
49737179 CTAATGTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 6 0.21
16 4 0.14
17 15 0.52
18 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATATAATAAAATATA
Found at i:49748195 original size:29 final size:29
Alignment explanation
Indices: 49748146--49748221 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
49748136 ACGATAATGC
* * *
49748146 AAGTGACTAAAACGTAGTATTTCGAACGT
1 AAGTGACTAAAACGTAATATTTCAAACAT
* * *
49748175 AAGTAACTAAAACTTAATATTTTAAACAT
1 AAGTGACTAAAACGTAATATTTCAAACAT
*
49748204 AAGTGACTAAAATGTAAT
1 AAGTGACTAAAACGTAAT
49748222 CTGATGCAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (29 bp):
AAGTGACTAAAACGTAATATTTCAAACAT
Found at i:49749154 original size:6 final size:7
Alignment explanation
Indices: 49749139--49749163 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
49749129 ATCGAAATTT
49749139 AAAATAA
1 AAAATAA
49749146 AAAATAA
1 AAAATAA
49749153 AAAATAA
1 AAAATAA
49749160 AAAA
1 AAAA
49749164 GGAAATTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:49762690 original size:27 final size:27
Alignment explanation
Indices: 49762652--49762704 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
49762642 AAAAAATGAC
49762652 TAAAAAAGAGTTGTACTAATTTTATTT
1 TAAAAAAGAGTTGTACTAATTTTATTT
*
49762679 TAAAACAA-AGTTGTGCTAATTTTATT
1 TAAAA-AAGAGTTGTACTAATTTTATT
49762705 AAGGTAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (27 bp):
TAAAAAAGAGTTGTACTAATTTTATTT
Found at i:49764774 original size:31 final size:31
Alignment explanation
Indices: 49764739--49764809 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
49764729 TGTCATCCCG
* *
49764739 GATTGCCCGACAACAATGACTAACCACCCTA
1 GATTGCCCGAAAACAATGACTAACCACCCCA
* ** * *
49764770 GATTGCTCGAAAATGATGGCTTACCACCCCA
1 GATTGCCCGAAAACAATGACTAACCACCCCA
49764801 GATTGCCCG
1 GATTGCCCG
49764810 GTAATGATGG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (31 bp):
GATTGCCCGAAAACAATGACTAACCACCCCA
Found at i:49764816 original size:31 final size:31
Alignment explanation
Indices: 49764761--49764819 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
49764751 ACAATGACTA
* *
49764761 ACCACCCTAGATTGCTCGAAAATGATGGCTT
1 ACCACCCCAGATTGCCCGAAAATGATGGCTT
**
49764792 ACCACCCCAGATTGCCCGGTAATGATGG
1 ACCACCCCAGATTGCCCGAAAATGATGG
49764820 TTTATCGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (31 bp):
ACCACCCCAGATTGCCCGAAAATGATGGCTT
Found at i:49764924 original size:76 final size:76
Alignment explanation
Indices: 49764801--49764958 Score: 174
Period size: 76 Copynumber: 2.1 Consensus size: 76
49764791 TACCACCCCA
** * * * ** *
49764801 GATTGCCCGGTAATGATGGTTTATCGATTTAGATCTGTCCTCCCGGGTTG-CTCGGTGACGATGA
1 GATTGCCCGACAATGAGGGTTTATCGATTCAAATCTGTCAGCCCGGGTTGTC-CGATGACGATGA
*
49764865 CCTGTCATCCCG
65 CCTGCCATCCCG
* * *
49764877 GATTGCCCGACAATGAGGGTTTATTGATTCAAATCTGTCAGCTCGGGTTGTCCGATGATGATGAC
1 GATTGCCCGACAATGAGGGTTTATCGATTCAAATCTGTCAGCCCGGGTTGTCCGATGACGATGAC
**
49764942 CTGCCATCTTG
66 CTGCCATCCCG
49764953 GATTGC
1 GATTGC
49764959 TCAATAACGA
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
76 66 0.99
77 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (76 bp):
GATTGCCCGACAATGAGGGTTTATCGATTCAAATCTGTCAGCCCGGGTTGTCCGATGACGATGAC
CTGCCATCCCG
Found at i:49765896 original size:22 final size:22
Alignment explanation
Indices: 49765851--49765972 Score: 131
Period size: 22 Copynumber: 5.5 Consensus size: 22
49765841 ATGTCATAGC
*
49765851 TCACATAGGTCAT-AGTTTGCATA
1 TCACAT-GG-CATAAGTTCGCATA
49765874 TCACATGGCATATA-TTCGCATA
1 TCACATGGCATA-AGTTCGCATA
* * *
49765896 TCACTTTAGCATAAGTTCGTATA
1 TCAC-ATGGCATAAGTTCGCATA
* * *
49765919 TCACATGACATAGGTTCACATA
1 TCACATGGCATAAGTTCGCATA
49765941 TCACATGGCATAAGTTCGCATA
1 TCACATGGCATAAGTTCGCATA
49765963 TCACATGGCA
1 TCACATGGCA
49765973 ATCACACAAT
Statistics
Matches: 82, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
21 3 0.04
22 55 0.67
23 24 0.29
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (22 bp):
TCACATGGCATAAGTTCGCATA
Found at i:49765921 original size:45 final size:44
Alignment explanation
Indices: 49765851--49765972 Score: 138
Period size: 45 Copynumber: 2.7 Consensus size: 44
49765841 ATGTCATAGC
* * *
49765851 TCACATAGGTCAT-AGTTTGCATATCACATGGCATATATTCGCATA
1 TCACATA-G-CATAAGTTCGCATATCACATGGCATAGATTCACATA
* * * *
49765896 TCACTTTAGCATAAGTTCGTATATCACATGACATAGGTTCACATA
1 TCAC-ATAGCATAAGTTCGCATATCACATGGCATAGATTCACATA
*
49765941 TCACATGGCATAAGTTCGCATATCACATGGCA
1 TCACATAGCATAAGTTCGCATATCACATGGCA
49765973 ATCACACAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
44 27 0.42
45 35 0.55
46 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (44 bp):
TCACATAGCATAAGTTCGCATATCACATGGCATAGATTCACATA
Found at i:49766267 original size:23 final size:25
Alignment explanation
Indices: 49766237--49766338 Score: 101
Period size: 24 Copynumber: 4.3 Consensus size: 25
49766227 TCACATATAA
49766237 GGTGATA-GGG-TT-CACATGTCACT
1 GGTGATAGGGGTTTACACATGT-ACT
49766260 GGTGATAGGGGTTTACACATG-ACT
1 GGTGATAGGGGTTTACACATGTACT
* * *
49766284 GGTGATAAGGGTTTGCACATGTTC-
1 GGTGATAGGGGTTTACACATGTACT
*
49766308 GGTGATAGGGG-TT-CACATGTATCA
1 GGTGATAGGGGTTTACACATGTA-CT
49766332 GGTGATA
1 GGTGATA
49766339 AGTGGTTATA
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
22 7 0.10
23 10 0.15
24 42 0.62
25 3 0.04
26 6 0.09
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.30
Consensus pattern (25 bp):
GGTGATAGGGGTTTACACATGTACT
Found at i:49766335 original size:24 final size:24
Alignment explanation
Indices: 49766223--49766338 Score: 95
Period size: 24 Copynumber: 5.0 Consensus size: 24
49766213 TATAGTGGAT
*
49766223 GGGTTCACA--TATAAGGTGATA-
1 GGGTTCACATGTATCAGGTGATAG
*
49766244 GGGTTCACATGTCA-CTGGTGATAG
1 GGGTTCACATGT-ATCAGGTGATAG
*
49766268 GGGTTTACACATG-A-CTGGTGATAAG
1 GGG-TT-CACATGTATCAGGTGAT-AG
*
49766293 GGTTTGCACATGT-TC-GGTGATAG
1 GGGTT-CACATGTATCAGGTGATAG
49766316 GGGTTCACATGTATCAGGTGATA
1 GGGTTCACATGTATCAGGTGATA
49766339 AGTGGTTATA
Statistics
Matches: 79, Mismatches: 5, Indels: 19
0.77 0.05 0.18
Matches are distributed among these distances:
21 9 0.11
22 7 0.09
23 16 0.20
24 34 0.43
25 7 0.09
26 6 0.08
ACGTcount: A:0.25, C:0.13, G:0.32, T:0.30
Consensus pattern (24 bp):
GGGTTCACATGTATCAGGTGATAG
Found at i:49766371 original size:22 final size:23
Alignment explanation
Indices: 49766342--49766466 Score: 80
Period size: 22 Copynumber: 5.6 Consensus size: 23
49766332 GGTGATAAGT
*
49766342 GGTT-ATATACTAACAAGGCA-C
1 GGTTCATATATTAACAAGGCAGC
* * *
49766363 GGTTCATATATTAGCAAGGTAGG
1 GGTTCATATATTAACAAGGCAGC
* * * *
49766386 GGTTCACATATTAATTAA-GTAGG
1 GGTTCATATATTAA-CAAGGCAGC
*
49766409 GGTT-ATATACTAACAAGGCA-C
1 GGTTCATATATTAACAAGGCAGC
* * *
49766430 GGTTCATATATTAGCAAGGTAGG
1 GGTTCATATATTAACAAGGCAGC
**
49766453 GGTTCGCATATTAA
1 GGTTCATATATTAA
49766467 TTAAGTAGGG
Statistics
Matches: 79, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
21 10 0.13
22 35 0.44
23 32 0.41
24 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.30
Consensus pattern (23 bp):
GGTTCATATATTAACAAGGCAGC
Found at i:49766396 original size:23 final size:23
Alignment explanation
Indices: 49766363--49766482 Score: 86
Period size: 23 Copynumber: 5.3 Consensus size: 23
49766353 AACAAGGCAC
*
49766363 GGTTCATATATTAGCAAGGTAGG
1 GGTTCACATATTAGCAAGGTAGG
**
49766386 GGTTCACATATTAATTAA-GTAGG
1 GGTTCACATATT-AGCAAGGTAGG
* * * * *
49766409 GGTT-ATATACTAACAAGGCA-C
1 GGTTCACATATTAGCAAGGTAGG
*
49766430 GGTTCATATATTAGCAAGGTAGG
1 GGTTCACATATTAGCAAGGTAGG
* **
49766453 GGTTCGCATATTAATTAA-GTAGG
1 GGTTCACATATT-AGCAAGGTAGG
49766476 GGTTCAC
1 GGTTCAC
49766483 CTGTATTACC
Statistics
Matches: 74, Mismatches: 18, Indels: 10
0.73 0.18 0.10
Matches are distributed among these distances:
21 7 0.09
22 20 0.27
23 41 0.55
24 6 0.08
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.31
Consensus pattern (23 bp):
GGTTCACATATTAGCAAGGTAGG
Found at i:49766423 original size:67 final size:67
Alignment explanation
Indices: 49766342--49766479 Score: 267
Period size: 67 Copynumber: 2.1 Consensus size: 67
49766332 GGTGATAAGT
49766342 GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCACATATTAATTAAGTA
1 GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCACATATTAATTAAGTA
49766407 GG
66 GG
*
49766409 GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCGCATATTAATTAAGTA
1 GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCACATATTAATTAAGTA
49766474 GG
66 GG
49766476 GGTT
1 GGTT
49766480 CACCTGTATT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 70 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (67 bp):
GGTTATATACTAACAAGGCACGGTTCATATATTAGCAAGGTAGGGGTTCACATATTAATTAAGTA
GG
Found at i:49769498 original size:44 final size:44
Alignment explanation
Indices: 49769447--49769547 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 44
49769437 ATTTTACTGC
* * **
49769447 CAATGGCTGTGGACACAAAACAAAATGTCGCAGATGGAATCTG-
1 CAATGGCTGTGGACACAAAACAAAATATCACAGATAAAATCTGT
** * *
49769490 CATATGGCTGTGGGTACATAACAAAATATTACAGATAAAATCTGT
1 CA-ATGGCTGTGGACACAAAACAAAATATCACAGATAAAATCTGT
49769535 CAATGGCTGTGGA
1 CAATGGCTGTGGA
49769548 AGCACTACAT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
43 2 0.04
44 43 0.91
45 2 0.04
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (44 bp):
CAATGGCTGTGGACACAAAACAAAATATCACAGATAAAATCTGT
Found at i:49772511 original size:23 final size:23
Alignment explanation
Indices: 49772485--49772535 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
49772475 AAAAATATCT
49772485 TTAAAATAAT-ATTTATTATTTTG
1 TTAAAATAATGATTT-TTATTTTG
*
49772508 TTAAAATAATGATTTTTGTTTTG
1 TTAAAATAATGATTTTTATTTTG
49772531 TTAAA
1 TTAAA
49772536 GAATTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (23 bp):
TTAAAATAATGATTTTTATTTTG
Found at i:49777887 original size:12 final size:13
Alignment explanation
Indices: 49777868--49777905 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
49777858 AAGATTGTTT
49777868 CAAAAAAAGTAAA
1 CAAAAAAAGTAAA
49777881 CAAAAAAAG-AAA
1 CAAAAAAAGTAAA
* *
49777893 CATAAAAACTAAA
1 CAAAAAAAGTAAA
49777906 ATTAAACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.76, C:0.11, G:0.05, T:0.08
Consensus pattern (13 bp):
CAAAAAAAGTAAA
Found at i:49777930 original size:19 final size:19
Alignment explanation
Indices: 49777884--49777930 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
49777874 AAGTAAACAA
*
49777884 AAAAAGAAACATAAAAACT
1 AAAAATAAACATAAAAACT
* *
49777903 AAAATTAAACTTAAAAA-T
1 AAAAATAAACATAAAAACT
49777921 AATAAATAAA
1 AA-AAATAAA
49777931 AAGAAAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 3 0.13
19 20 0.87
ACGTcount: A:0.72, C:0.06, G:0.02, T:0.19
Consensus pattern (19 bp):
AAAAATAAACATAAAAACT
Found at i:49782633 original size:16 final size:17
Alignment explanation
Indices: 49782609--49782640 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
49782599 TTAAATTAAC
49782609 TAAATTAATTTCTCAAT
1 TAAATTAATTTCTCAAT
49782626 TAAA-TAATTTCTCAA
1 TAAATTAATTTCTCAA
49782641 CTGAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAATTAATTTCTCAAT
Found at i:49782634 original size:20 final size:20
Alignment explanation
Indices: 49782591--49782632 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
49782581 TTATTTAACC
*
49782591 AATTAATTTTAAATTAACTA
1 AATTAATTTTAAATTAAATA
*
49782611 AATTAATTTCTCAATTAAATA
1 AATTAATTT-TAAATTAAATA
49782632 A
1 A
49782633 TTTCTCAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (20 bp):
AATTAATTTTAAATTAAATA
Found at i:49789799 original size:12 final size:12
Alignment explanation
Indices: 49789782--49789807 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
49789772 TTTCATCACA
49789782 TCCTGTAAAATT
1 TCCTGTAAAATT
49789794 TCCTGTAAAATT
1 TCCTGTAAAATT
49789806 TC
1 TC
49789808 GTTAGACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (12 bp):
TCCTGTAAAATT
Found at i:49790667 original size:27 final size:26
Alignment explanation
Indices: 49790628--49790696 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 26
49790618 GAGGAAGGTA
*
49790628 TCCCATGGACGGCACCAAAGGTGCCTT
1 TCCCATGG-CGGCACCAAAGGTGCCAT
* * *
49790655 TCCCATAGGCGGCCCCGATGGTGCCAT
1 TCCCAT-GGCGGCACCAAAGGTGCCAT
49790682 TCCCATGGGCGGCAC
1 TCCCAT-GGCGGCAC
49790697 TGCCCATATA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 33 0.94
28 2 0.06
ACGTcount: A:0.17, C:0.36, G:0.29, T:0.17
Consensus pattern (26 bp):
TCCCATGGCGGCACCAAAGGTGCCAT
Found at i:49790764 original size:10 final size:9
Alignment explanation
Indices: 49790749--49790895 Score: 72
Period size: 10 Copynumber: 15.3 Consensus size: 9
49790739 GAAGGAGAGG
49790749 GAAAGAAGAA
1 GAAAGAA-AA
49790759 GAAAG-AAA
1 GAAAGAAAA
49790767 GAAAGAAAA
1 GAAAGAAAA
* *
49790776 GGAAAAGAGAG
1 -G-AAAGAAAA
49790787 GAAAG-AAA
1 GAAAGAAAA
49790795 GAAA-AAGAA
1 GAAAGAA-AA
49790804 GGAAAGAAAA
1 -GAAAGAAAA
*
49790814 GGAAAGGAGAA
1 -GAAA-GAAAA
*
49790825 GAAGAAAAAA
1 GAA-AGAAAA
49790835 GAAAGAAAA
1 GAAAGAAAA
*
49790844 -AGAAGGAAA
1 GA-AAGAAAA
49790853 GAAAAGGAAATGA
1 G-AAA-GAAA--A
49790866 GAAGAGAAAA
1 GAA-AGAAAA
49790876 -AAA-AAAA
1 GAAAGAAAA
49790883 GAAAGAACAA
1 GAAAGAA-AA
49790893 GAA
1 GAA
49790896 GAGGGGAGGA
Statistics
Matches: 108, Mismatches: 10, Indels: 38
0.69 0.06 0.24
Matches are distributed among these distances:
7 4 0.04
8 18 0.17
9 25 0.23
10 35 0.32
11 17 0.16
12 6 0.06
13 3 0.03
ACGTcount: A:0.71, C:0.01, G:0.28, T:0.01
Consensus pattern (9 bp):
GAAAGAAAA
Found at i:49790791 original size:38 final size:37
Alignment explanation
Indices: 49790743--49790889 Score: 134
Period size: 38 Copynumber: 3.7 Consensus size: 37
49790733 GGAAGAGAAG
49790743 GAGAGGGAAAGAAGAAGAAAGAAAGAAAGAAAAGGAAAA
1 GAGA-GGAAAGAAGAA-AAAGAAAGAAAGAAAAGGAAAA
*
49790782 GAGAGGAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGA
1 GAGAGGAAAG-AAGAAAAAGAAAGAAAGAAAAGGAAA--A
* * *
49790822 GAAGAAGAAAAAAGAAAGAAAAAGAAGGAAAGAAAAGGAAAT
1 G-AG-AG--GAAAG-AAGAAAAAGAAAGAAAGAAAAGGAAAA
*
49790864 GAGAAGAGAAA-AAAAAAAAGAAAGAA
1 GAG-AG-GAAAGAAGAAAAAGAAAGAA
49790890 CAAGAAGAGG
Statistics
Matches: 95, Mismatches: 6, Indels: 15
0.82 0.05 0.13
Matches are distributed among these distances:
38 39 0.41
39 9 0.09
40 6 0.06
41 7 0.07
42 3 0.03
44 31 0.33
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (37 bp):
GAGAGGAAAGAAGAAAAAGAAAGAAAGAAAAGGAAAA
Found at i:49790851 original size:44 final size:43
Alignment explanation
Indices: 49790749--49790889 Score: 180
Period size: 44 Copynumber: 3.3 Consensus size: 43
49790739 GAAGGAGAGG
* * * * **
49790749 GAAAGAAGAAGAAAGAAAG-AAAGAAAAGGAAAAGAGAGGAAA
1 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
49790791 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAAGAAAAAA
1 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAG-AGAAAAAA
*
49790835 GAAAGAAAAAGAAGGAAAGAAAAGGAAATGAGAAGAGAAAAAA
1 GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
49790878 -AAA-AAGAAAGAA
1 GAAAGAA-AAAGAA
49790890 CAAGAAGAGG
Statistics
Matches: 89, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
41 2 0.02
42 26 0.29
43 21 0.24
44 40 0.45
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.01
Consensus pattern (43 bp):
GAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAAAA
Found at i:49790856 original size:14 final size:14
Alignment explanation
Indices: 49790748--49790857 Score: 91
Period size: 14 Copynumber: 7.7 Consensus size: 14
49790738 AGAAGGAGAG
*
49790748 GGAAAGAAGAAGAA
1 GGAAAGAAAAAGAA
*
49790762 AGAAAGAAAGAA-AA
1 GGAAAGAAA-AAGAA
* *
49790776 GGAAA-AGAGAGGAA
1 GGAAAGA-AAAAGAA
*
49790790 AGAAAGAAAAAGAA
1 GGAAAGAAAAAGAA
*
49790804 GGAAAGAAAAGGAAA
1 GGAAAGAAAAAG-AA
49790819 GGAGAAGAAGAAA-AA
1 GGA-AAGAA-AAAGAA
*
49790834 AGAAAGAAAAAGAA
1 GGAAAGAAAAAGAA
49790848 GGAAAGAAAA
1 GGAAAGAAAA
49790858 GGAAATGAGA
Statistics
Matches: 75, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
13 5 0.07
14 51 0.68
15 12 0.16
16 5 0.07
17 2 0.03
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (14 bp):
GGAAAGAAAAAGAA
Found at i:49791318 original size:21 final size:21
Alignment explanation
Indices: 49791294--49791337 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
49791284 ATAAAGTAAA
49791294 ATTATAAAATTAGAAATTATG
1 ATTATAAAATTAGAAATTATG
49791315 ATTATAAAATTAGAAATTATG
1 ATTATAAAATTAGAAATTATG
49791336 AT
1 AT
49791338 ATTTTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (21 bp):
ATTATAAAATTAGAAATTATG
Found at i:49791965 original size:159 final size:157
Alignment explanation
Indices: 49791447--49792015 Score: 497
Period size: 159 Copynumber: 3.6 Consensus size: 157
49791437 ATACAAATAA
* *
49791447 TTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAA
1 TTCAAACAAAATGCACTAAAATAATATAAAATAATAAAATACGAAAATAATAT-TTTTTATTG-A
* * *
49791512 AGTAATAAAATTCGGGAGAATAATACGAGCAAAGAGCAGGAATAA-GG-TTTTTTTACATTAAAT
64 AGTAATAAAATTCGGGAAAATAATACAAGCAAA-AGCAGGAATAAGGGTTTTTTTTACACTAAAT
*
49791575 TAATGTAAAAAATACACTAAATTAATAAAT
128 TAATTTAAAAAATACACTAAATTAATAAAT
* * * *
49791605 TTAAAACATAATGCACTAAAATAA-AGTAAAATTATAAAATTA-GAAATTATGATATTTTTTA--
1 TTCAAACAAAATGCACTAAAATAATA-TAAAATAATAAAA-TACGAAA--ATAATATTTTTTATT
* * * * * *
49791666 -AAATAATAAAATGCGAAGAAAAAAATACGAA-CAAATGGC-CGAAGTAAGAGTGTTTTACTTTT
62 GAAGTAATAAAATTCG-GGAAAATAATAC-AAGCAAA-AGCAGGAA-TAAG-G-GTTTT--TTTT
* * * * **
49791728 --ACTAACTT-TTTTAAAAATTAAAAAATAATTAATACAAATAT
119 ACACTAAATTAATTTAAAAAATACACTA-AATTAAT---AA-AT
* *
49791769 TTCAAACAAAATGTAATAAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATTGAGA
1 TTCAAACAAAATGCACTAAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATTGA-A
* *
49791834 GTAATAAAATTTGGGAAAATAATACAAGCAAAACACAGGAATAAGGGTTTTTTTTACACTAAATT
65 GTAATAAAATTCGGGAAAATAATACAAGCAAAA-GCAGGAATAAGGGTTTTTTTTACACTAAATT
49791899 AATTTAAAAAATACACTAAATTAATAAAT
129 AATTTAAAAAATACACTAAATTAATAAAT
* * * * *
49791928 TTCAAACATAATGCACTGAAATAATGTAAAATTATAAAATTA-GAAATTATGATATTTTTTA---
1 TTCAAACAAAATGCACTAAAATAATATAAAATAATAAAA-TACGAAA--ATAATATTTTTTATTG
*
49791989 AAGTAATAAAATACGGAGAAAA-AATAC
63 AAGTAATAAAATTCGG-GAAAATAATAC
49792016 GAACAAATGA
Statistics
Matches: 325, Mismatches: 52, Indels: 69
0.73 0.12 0.15
Matches are distributed among these distances:
155 16 0.05
156 18 0.06
157 20 0.06
158 43 0.13
159 59 0.18
160 26 0.08
161 16 0.05
162 16 0.05
163 23 0.07
164 53 0.16
165 21 0.06
166 14 0.04
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (157 bp):
TTCAAACAAAATGCACTAAAATAATATAAAATAATAAAATACGAAAATAATATTTTTTATTGAAG
TAATAAAATTCGGGAAAATAATACAAGCAAAAGCAGGAATAAGGGTTTTTTTTACACTAAATTAA
TTTAAAAAATACACTAAATTAATAAAT
Found at i:49792013 original size:322 final size:322
Alignment explanation
Indices: 49791315--49792044 Score: 1209
Period size: 322 Copynumber: 2.3 Consensus size: 322
49791305 AGAAATTATG
49791315 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATACGGAGAAAAAAATACGAACAA
1 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATACGGAGAAAAAAATACGAACAA
* *
49791380 ATGACCGAAGTAAGA--GTTTTACTTTTACTAACTTTTTTAAAAATTCAAAAGTAATTAATACAA
66 ATGACCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTAAAAAATAATTAATACAA
* *
49791443 ATAATTCAAACAAAATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTAT
131 ATAATTCAAACAAAATGTAATAAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTAT
* * * *
49791508 TGAAAGTAATAAAATTCGGGAGAATAATACGAGCAAAGAGCAGGAATAAGGTTTTTTTACATTAA
196 TGAAAGTAATAAAATTCGGGAAAATAATACAAGCAAAGAACAGGAATAAGGTTTTTTTACACTAA
49791573 ATTAATGTAAAAAATACACTAAATTAATAAATTTAAAACATAATGCACTAAAATAAAGTAAA
261 ATTAATGTAAAAAATACACTAAATTAATAAATTTAAAACATAATGCACTAAAATAAAGTAAA
* *
49791635 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATGCGAAGAAAAAAATACGAACAA
1 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATACGGAGAAAAAAATACGAACAA
*
49791700 ATGGCCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTAAAAAATAATTAATACAA
66 ATGACCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTAAAAAATAATTAATACAA
*
49791765 ATATTTCAAACAAAATGTAATAAAATAATATAAAATAATAAAATACGAAAATAATAT-TTTTTAT
131 ATAATTCAAACAAAATGTAATAAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTAT
* *
49791829 TGAGAGTAATAAAATTTGGGAAAATAATACAAGCAAA-ACACAGGAATAAGGGTTTTTTTTACAC
196 TGAAAGTAATAAAATTCGGGAAAATAATACAAGCAAAGA-ACAGGAATAA-GG-TTTTTTTACAC
* * * *
49791893 TAAATTAATTTAAAAAATACACTAAATTAATAAATTTCAAACATAATGCACTGAAATAATGTAAA
258 TAAATTAATGTAAAAAATACACTAAATTAATAAATTTAAAACATAATGCACTAAAATAAAGTAAA
*
49791958 ATTATAAAATTAGAAATTATGATATTTTTTAAAGTAATAAAATACGGAG-AAAAAATACGAACAA
1 ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATACGGAGAAAAAAATACGAACAA
* *
49792022 ATGACTGAAGTAAGAGTTTTTTA
66 ATGACCGAAGTAAGAGTGTTTTA
49792045 TTAACTTTTT
Statistics
Matches: 381, Mismatches: 24, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
320 78 0.20
321 49 0.13
322 137 0.36
323 117 0.31
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (322 bp):
ATTATAAAATTAGAAATTATGATATTTTTTAAAATAATAAAATACGGAGAAAAAAATACGAACAA
ATGACCGAAGTAAGAGTGTTTTACTTTTACTAACTTTTTTAAAAATTAAAAAATAATTAATACAA
ATAATTCAAACAAAATGTAATAAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTAT
TGAAAGTAATAAAATTCGGGAAAATAATACAAGCAAAGAACAGGAATAAGGTTTTTTTACACTAA
ATTAATGTAAAAAATACACTAAATTAATAAATTTAAAACATAATGCACTAAAATAAAGTAAA
Found at i:49806118 original size:27 final size:27
Alignment explanation
Indices: 49806088--49806235 Score: 174
Period size: 27 Copynumber: 5.5 Consensus size: 27
49806078 TGACACAAGT
*
49806088 GGTGCCGCCTATGGGAAAGGTACCTTC
1 GGTGCCGCCTATGGGAAAGGCACCTTC
*
49806115 GGTGCCGCCTATGGGAAAGGTACCTTC
1 GGTGCCGCCTATGGGAAAGGCACCTTC
** *
49806142 GGTGCCGCCTATGGGAAATACACCTTT
1 GGTGCCGCCTATGGGAAAGGCACCTTC
* *
49806169 GGTGCCGCCCAT-GGAAATGGCACCTTT
1 GGTGCCGCCTATGGGAAA-GGCACCTTC
* *
49806196 GGTGCCGCCCAT-GGAAATGGCACCATC
1 GGTGCCGCCTATGGGAAA-GGCACCTTC
*
49806223 GGTGTCGCCTATG
1 GGTGCCGCCTATG
49806236 AGATACCCTC
Statistics
Matches: 108, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 5 0.05
27 103 0.95
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (27 bp):
GGTGCCGCCTATGGGAAAGGCACCTTC
Found at i:49806225 original size:81 final size:81
Alignment explanation
Indices: 49806087--49806235 Score: 203
Period size: 81 Copynumber: 1.8 Consensus size: 81
49806077 ATGACACAAG
* * * * *
49806087 TGGTGCCGCCTATGGGAAAGGTACCTTCGGTGCCGCCTATGGGAAAGGTACCTTCGGTGCCGCCT
1 TGGTGCCGCCCATGGGAAAGGCACCTTCGGTGCCGCCCATGGGAAAGGCACCATCGGTGCCGCCT
49806152 ATGGGAAATACACCTT
66 ATGGGAAATACACCTT
* *
49806168 TGGTGCCGCCCAT-GGAAATGGCACCTTTGGTGCCGCCCAT-GGAAATGGCACCATCGGTGTCGC
1 TGGTGCCGCCCATGGGAAA-GGCACCTTCGGTGCCGCCCATGGGAAA-GGCACCATCGGTGCCGC
49806231 CTATG
64 CTATG
49806236 AGATACCCTC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
80 10 0.17
81 49 0.83
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (81 bp):
TGGTGCCGCCCATGGGAAAGGCACCTTCGGTGCCGCCCATGGGAAAGGCACCATCGGTGCCGCCT
ATGGGAAATACACCTT
Found at i:49811357 original size:23 final size:23
Alignment explanation
Indices: 49811331--49811474 Score: 182
Period size: 23 Copynumber: 6.3 Consensus size: 23
49811321 ATAAGTGTCA
49811331 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
** *
49811354 CACTGATACATAGCCG-TGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
49811376 CACTGAAATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
49811399 CACTGATATGTAGTCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* **
49811422 CACTGAAATGTAGTTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
49811445 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
49811468 CACTGAT
1 CACTGAT
49811475 CAATAAAACT
Statistics
Matches: 101, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
22 17 0.17
23 84 0.83
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:49811442 original size:46 final size:46
Alignment explanation
Indices: 49811331--49811473 Score: 216
Period size: 46 Copynumber: 3.1 Consensus size: 46
49811321 ATAAGTGTCA
* **
49811331 CACTGATATGTAGCCGAAGCTACCACTGATACATAGCCGT-GCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
* *
49811376 CACTGAAATGTAGCCAAAGCTACCACTGATATGTAGTCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
**
49811422 CACTGAAATGTAGTTGAAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
49811468 CACTGA
1 CACTGA
49811474 TCAATAAAAC
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
45 35 0.40
46 53 0.60
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
Found at i:49817981 original size:18 final size:17
Alignment explanation
Indices: 49817960--49818019 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
49817950 GGGTCAAGTG
49817960 TGAATTTAGAAGAATTTT
1 TGAATTTAG-AGAATTTT
*
49817978 TGAA-TTAGTGAATTTT
1 TGAATTTAGAGAATTTT
*
49817994 GTG-ATTTAGTGAATTTT
1 -TGAATTTAGAGAATTTT
49818011 TGCAATTTA
1 TG-AATTTA
49818020 AAAAGAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
16 10 0.27
17 18 0.49
18 9 0.24
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (17 bp):
TGAATTTAGAGAATTTT
Found at i:49818002 original size:17 final size:16
Alignment explanation
Indices: 49817971--49818017 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 16
49817961 GAATTTAGAA
49817971 GAATTTTTGAATTAGT
1 GAATTTTTGAATTAGT
*
49817987 GAATTTTGTGATTTAGT
1 GAATTTT-TGAATTAGT
49818004 GAATTTTTGCAATT
1 GAATTTTTG-AATT
49818018 TAAAAAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 9 0.33
17 18 0.67
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (16 bp):
GAATTTTTGAATTAGT
Found at i:49819311 original size:46 final size:46
Alignment explanation
Indices: 49819244--49819428 Score: 316
Period size: 46 Copynumber: 4.0 Consensus size: 46
49819234 CATGGCAAAG
49819244 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
49819290 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
49819336 TATGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
** * *
49819382 TGTGAAAAGTAGGTATGGTAATTCCGTGAAGAAAGCCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
49819428 T
1 T
49819429 ATAGCAATGT
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 132 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:49822732 original size:40 final size:40
Alignment explanation
Indices: 49822687--49822767 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
49822677 ATAATTCTTT
49822687 TTCTTTTACCCTTTAAACTAAAACAATTTTTAATTTTTAA
1 TTCTTTTACCCTTTAAACTAAAACAATTTTTAATTTTTAA
* *
49822727 TTCTTTTACCCTTTGAACTAAAATAATTTTTAATTTTTAA
1 TTCTTTTACCCTTTAAACTAAAACAATTTTTAATTTTTAA
49822767 T
1 T
49822768 GAAACTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.33, C:0.14, G:0.01, T:0.52
Consensus pattern (40 bp):
TTCTTTTACCCTTTAAACTAAAACAATTTTTAATTTTTAA
Found at i:49828127 original size:36 final size:35
Alignment explanation
Indices: 49828080--49828147 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
49828070 TATTAACAAC
*
49828080 TTTTCTTCTCATATATATATAT-ATATATTTGTTCAA
1 TTTTCCTCTCAT-T-TATATATGATATATTTGTTCAA
*
49828116 TTTTCCTCTCATTTATATATGATATCTTTGTT
1 TTTTCCTCTCATTTATATATGATATATTTGTT
49828148 GCAGACGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 7 0.24
35 11 0.38
36 11 0.38
ACGTcount: A:0.25, C:0.13, G:0.04, T:0.57
Consensus pattern (35 bp):
TTTTCCTCTCATTTATATATGATATATTTGTTCAA
Found at i:49839187 original size:19 final size:20
Alignment explanation
Indices: 49839165--49839205 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
49839155 ATATTTGTAT
*
49839165 TTTATAATGA-TTAATTTTA
1 TTTATAATGATTTAAATTTA
*
49839184 TTTATAATTATTTAAATTTA
1 TTTATAATGATTTAAATTTA
49839204 TT
1 TT
49839206 GTTTTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTATAATGATTTAAATTTA
Found at i:49842056 original size:114 final size:114
Alignment explanation
Indices: 49841808--49842568 Score: 805
Period size: 114 Copynumber: 6.7 Consensus size: 114
49841798 TATTTGTAAG
* * * * * ** * * * *
49841808 CGCCGCAAAAAATGTTAGCCAAAACGCATTGTTTGTTCCCGAGGTATATTAGACTTGGTGGCGTT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* * * * * * * *
49841873 TA-TGATAAACGCCGC-AATAGTATATTATTAGCGGCG-TTTTTTAGTAAA
66 TACGGAAAAACGCCGCTAA-AGCAGAGTATTAGAGGCGCTTTGTAAG-AAA
*
49841921 CGCCGCAAAATATCTTAACCAAAATGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* *
49841986 TACGGAAAAACACCGCTAAAGGAGAGTATTAGAGGCGCTTTGTAAGAAA
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
* * * * * * * *
49842035 TGCCGCAAATTATCTTAACCAAAATGCAGCGTTTGGTCTTAATGTATATTAGAATTAGTGGCGAT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
** * * * * *
49842100 TGTGGGAAAACGCCGCTATAGCACAGTATTAGCA-GCGTTTTATACA-AAA
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAG-AGGCGCTTTGTA-AGAAA
* *
49842149 CGCCACAAAATATCTTAACCAAAACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* * * *
49842214 TACGGAAAAATGCCGCTAAGGGAGAGTATTAAAGGCGCTTTGTAAGAAA
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
* * * * * *
49842263 CGCCGCAAATTATCTTAACCAAAACGCAACGTTTGGTCTTAATGTATATTAGAATTAGTGGCGAT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
** * * * * * *
49842328 TGTGGGAAAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACA-AAA
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTA-AGAAA
*
49842377 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* ** *
49842442 TACGGAAAAAGGCCGCTAAAGCAGAGTATTAGAGATGCTTTGTAAGAAT
66 TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
* * * * * *
49842491 TGCCGCAAAATATCTTAACCAAAAAGCAGCGTTTGGTCTTGATGTATATTAGAATTAGTGGCGCT
1 CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
* *
49842556 TATGTAAAAACGC
66 TACGGAAAAACGC
49842569 ATGTAGGTTT
Statistics
Matches: 532, Mismatches: 107, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
113 58 0.11
114 463 0.87
115 11 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (114 bp):
CGCCGCAAAATATCTTAACCAAAACGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGT
TACGGAAAAACGCCGCTAAAGCAGAGTATTAGAGGCGCTTTGTAAGAAA
Found at i:49842276 original size:228 final size:228
Alignment explanation
Indices: 49841879--49842553 Score: 1116
Period size: 228 Copynumber: 3.0 Consensus size: 228
49841869 CGTTTATGAT
* * * * * **
49841879 AAACGCCGCAATAGTATATTATTAGCGGCGTTTTTTAGTAAACGCCGCAAAATATCTTAACCAAA
1 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
* * *
49841944 ATGCATCGTTTGGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACACCGCTAAAGGA
66 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGA
*
49842009 GAGTATTAGAGGCGCTTTGTAAGAAATGCCGCAAATTATCTTAACCAAAATGCAGCGTTTGGTCT
131 GAGTATTAGAGGCGCTTTGTAAGAAATGCCGCAAATTATCTTAACCAAAAAGCAGCGTTTGGTCT
49842074 TAATGTATATTAGAATTAGTGGCGATTGTGGGA
196 TAATGTATATTAGAATTAGTGGCGATTGTGGGA
* *
49842107 AAACGCCGCTATAGCACAGTATTAGCAGCGTTTTATACAAAACGCCACAAAATATCTTAACCAAA
1 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
* *
49842172 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAATGCCGCTAAGGGA
66 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGA
* * * *
49842237 GAGTATTAAAGGCGCTTTGTAAGAAACGCCGCAAATTATCTTAACCAAAACGCAACGTTTGGTCT
131 GAGTATTAGAGGCGCTTTGTAAGAAATGCCGCAAATTATCTTAACCAAAAAGCAGCGTTTGGTCT
49842302 TAATGTATATTAGAATTAGTGGCGATTGTGGGA
196 TAATGTATATTAGAATTAGTGGCGATTGTGGGA
49842335 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
1 AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
* *
49842400 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAAGGCCGCTAAAGCA
66 ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGA
** * *
49842465 GAGTATTAGAGATGCTTTGTAAGAATTGCCGCAAAATATCTTAACCAAAAAGCAGCGTTTGGTCT
131 GAGTATTAGAGGCGCTTTGTAAGAAATGCCGCAAATTATCTTAACCAAAAAGCAGCGTTTGGTCT
*
49842530 TGATGTATATTAGAATTAGTGGCG
196 TAATGTATATTAGAATTAGTGGCG
49842554 CTTATGTAAA
Statistics
Matches: 415, Mismatches: 32, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
228 415 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.28
Consensus pattern (228 bp):
AAACGCCGCTATAGCACAGTATTAGCGGCGTTTTATACAAAACGCCGCAAAATATCTTAACCAAA
ACGCATCGTTTTGTCTTGAGGTATATAAGAATTAGTGGCGGTTACGGAAAAACGCCGCTAAAGGA
GAGTATTAGAGGCGCTTTGTAAGAAATGCCGCAAATTATCTTAACCAAAAAGCAGCGTTTGGTCT
TAATGTATATTAGAATTAGTGGCGATTGTGGGA
Found at i:49843444 original size:12 final size:12
Alignment explanation
Indices: 49843427--49843453 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
49843417 AATTTTATTA
49843427 AATAATATTAAT
1 AATAATATTAAT
49843439 AATAATATTAAT
1 AATAATATTAAT
49843451 AAT
1 AAT
49843454 GTCATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:49845053 original size:45 final size:44
Alignment explanation
Indices: 49844961--49845064 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 44
49844951 TTTGAAAACT
* *
49844961 ATGTTAAGCTATGTTAAACATTTTGAATGTTAAGCATAGTTTTGA
1 ATGTTAAGCTATGTTAAACATTTTGAATGTTAA-CACAGTTTCGA
* *
49845006 ATGTTTAGCTATGTTAATCTATGTTTTGAATGTTAA-ACA-TTTCGA
1 ATGTTAAGCTATGTTAAAC-A--TTTTGAATGTTAACACAGTTTCGA
49845051 ATGTTAAGCATATG
1 ATGTTAAGC-TATG
49845065 AGTTTCTGCA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
45 30 0.60
46 7 0.14
48 13 0.26
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (44 bp):
ATGTTAAGCTATGTTAAACATTTTGAATGTTAACACAGTTTCGA
Found at i:49846283 original size:41 final size:41
Alignment explanation
Indices: 49846089--49846398 Score: 261
Period size: 41 Copynumber: 7.5 Consensus size: 41
49846079 ACTTTTTTAG
* * *
49846089 ATTTTCATAGTACATAACTTACATAATATTGAACTTACTTA
1 ATTTTCATAATACATAACTTACACAATATTGAACTTACATA
* * * * * *
49846130 A-CTT--TAATA-ATAATTTTCACAGTACAT-AACGTACATA
1 ATTTTCATAATACATAACTTACACAATA-TTGAACTTACATA
** ***
49846167 ATTTTCATAACCTACATAACTTATTCAATACACAACTTACATA
1 ATTTTCATAA--TACATAACTTACACAATATTGAACTTACATA
* * *
49846210 ATTGTTTATAATACACAACTTACATAATATTGAACTTACATA
1 ATT-TTCATAATACATAACTTACACAATATTGAACTTACATA
* * *
49846252 ATTTTCATAGTACATAACTTAAACGATATTGAACTTACATA
1 ATTTTCATAATACATAACTTACACAATATTGAACTTACATA
* *** * *
49846293 ATTTTCATAACCTACATAACTTATACAATACACAGCTTACTTA
1 ATTTTCATAA--TACATAACTTACACAATATTGAACTTACATA
* * *
49846336 AATTTCATAATACATAGCTTACATAATATTGGAACTTACATA
1 ATTTTCATAATACATAACTTACACAATATT-GAACTTACATA
49846378 ATTTTCATAATACATAACTTA
1 ATTTTCATAATACATAACTTA
49846399 TTTAATTTTC
Statistics
Matches: 206, Mismatches: 51, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
37 20 0.10
38 7 0.03
40 5 0.02
41 57 0.28
42 56 0.27
43 55 0.27
44 6 0.03
ACGTcount: A:0.42, C:0.17, G:0.04, T:0.37
Consensus pattern (41 bp):
ATTTTCATAATACATAACTTACACAATATTGAACTTACATA
Found at i:49846314 original size:126 final size:126
Alignment explanation
Indices: 49846161--49846398 Score: 388
Period size: 126 Copynumber: 1.9 Consensus size: 126
49846151 GTACATAACG
* * *
49846161 TACATAATTTTCATAACCTACATAACTTATTCAATACACAACTTACATAATTGTTTATAATACAC
1 TACATAATTTTCATAACCTACATAACTTATACAATACACAACTTACATAAAT-TTCATAATACAC
*
49846226 AACTTACATAATATT-GAACTTACATAATTTTCATAGTACATAACTTAAACGATATTGAACT
65 AACTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTTAAACGATATTGAACT
* * *
49846287 TACATAATTTTCATAACCTACATAACTTATACAATACACAGCTTACTTAAATTTCATAATACATA
1 TACATAATTTTCATAACCTACATAACTTATACAATACACAACTTACATAAATTTCATAATACACA
*
49846352 GCTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTTA
66 ACTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTTA
49846399 TTTAATTTTC
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
125 24 0.23
126 79 0.77
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.37
Consensus pattern (126 bp):
TACATAATTTTCATAACCTACATAACTTATACAATACACAACTTACATAAATTTCATAATACACA
ACTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTTAAACGATATTGAACT
Found at i:49846404 original size:25 final size:25
Alignment explanation
Indices: 49846368--49846506 Score: 140
Period size: 25 Copynumber: 5.5 Consensus size: 25
49846358 ATAATATTGG
49846368 AACTTACATAATTTTCATAATACAT
1 AACTTACATAATTTTCATAATACAT
** * *
49846393 AACTTATTTAATTTTCATAATATAA
1 AACTTACATAATTTTCATAATACAT
* *
49846418 AACTTACATAA-CTT-ATACAGTACAC
1 AACTTACATAATTTTCATA-A-TACAT
*
49846443 AGCTTACATAATTTTCATAATACAT
1 AACTTACATAATTTTCATAATACAT
*
49846468 AACTAACATAATTCTTCATAATACA-
1 AACTTACATAATT-TTCATAATACAT
*
49846493 ACAGTTACATAATT
1 A-ACTTACATAATT
49846507 CTTAAAGAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
23 3 0.03
24 3 0.03
25 59 0.64
26 24 0.26
27 3 0.03
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (25 bp):
AACTTACATAATTTTCATAATACAT
Found at i:49846428 original size:126 final size:126
Alignment explanation
Indices: 49846161--49846479 Score: 329
Period size: 126 Copynumber: 2.6 Consensus size: 126
49846151 GTACATAACG
* * * * *
49846161 TACATAATTTTCATAACCTACATAACTTATTCAATACACAACTTACATAATTGTTTATAATACAC
1 TACATAACTTACATAACCTACATAACTTATACAATACACAACTTACATAAATGTTCATAATACAC
* * * *
49846226 AACTTACATAATATTGAACTTACATAATTTTCATAGTACATAACTTAAACGATATTGAACT
66 AACTTACATAATATTGAACTTACATAATTTTCATAATACATAACTTAAACAATATTCAAAT
* * * * *
49846287 TACATAATTTTCATAACCTACATAACTTATACAATACACAGCTTACTTAAAT-TTCATAATACAT
1 TACATAACTTACATAACCTACATAACTTATACAATACACAACTTACATAAATGTTCATAATACAC
* *
49846351 AGCTTACATAATATTGGAACTTACATAATTTTCATAATACATAACTT-----AT-TT-AATT
66 AACTTACATAATATT-GAACTTACATAATTTTCATAATACATAACTTAAACAATATTCAAAT
* * * * *
49846406 TTCATAA-TATA-A-AACTTACATAACTTATACAGTACACAGCTTACAT-AATTTTCATAATACA
1 TACATAACT-TACATAACCTACATAACTTATACAATACACAACTTACATAAATGTTCATAATACA
* *
49846467 TAACTAACATAAT
65 CAACTTACATAAT
49846480 TCTTCATAAT
Statistics
Matches: 174, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
116 3 0.02
117 53 0.30
118 2 0.01
119 10 0.06
120 2 0.01
121 2 0.01
125 24 0.14
126 78 0.45
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (126 bp):
TACATAACTTACATAACCTACATAACTTATACAATACACAACTTACATAAATGTTCATAATACAC
AACTTACATAATATTGAACTTACATAATTTTCATAATACATAACTTAAACAATATTCAAAT
Found at i:49846550 original size:9 final size:9
Alignment explanation
Indices: 49846533--49846631 Score: 135
Period size: 9 Copynumber: 11.0 Consensus size: 9
49846523 ATGGACCGGT
49846533 CTTACATAA
1 CTTACATAA
*
49846542 CTTAAATAA
1 CTTACATAA
49846551 CTTACATAA
1 CTTACATAA
49846560 CTTACATAA
1 CTTACATAA
*
49846569 CCTACATAA
1 CTTACATAA
* *
49846578 ATTAAATAA
1 CTTACATAA
49846587 CTTACATAA
1 CTTACATAA
49846596 CTTACATAA
1 CTTACATAA
*
49846605 CCTACATAA
1 CTTACATAA
* *
49846614 ATTAAATAA
1 CTTACATAA
49846623 CTTACATAA
1 CTTACATAA
49846632 TACATAAAAA
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 76 1.00
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.31
Consensus pattern (9 bp):
CTTACATAA
Found at i:49846583 original size:36 final size:36
Alignment explanation
Indices: 49846535--49846638 Score: 185
Period size: 36 Copynumber: 2.9 Consensus size: 36
49846525 GGACCGGTCT
*
49846535 TACATAACTTAAATAACTTACATAACTTACATAACC
1 TACATAAATTAAATAACTTACATAACTTACATAACC
49846571 TACATAAATTAAATAACTTACATAACTTACATAACC
1 TACATAAATTAAATAACTTACATAACTTACATAACC
49846607 TACATAAATTAAATAACTTACATAA--TACATAA
1 TACATAAATTAAATAACTTACATAACTTACATAA
49846639 AAATATATCA
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
34 7 0.10
36 60 0.90
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (36 bp):
TACATAAATTAAATAACTTACATAACTTACATAACC
Found at i:49852166 original size:21 final size:21
Alignment explanation
Indices: 49852140--49852208 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
49852130 CAACAACTTA
* *
49852140 AAGCAGATGCGGCAGCAAGGG
1 AAGCAGATGCGACAGCAAGAG
* *
49852161 AAGCAGATGCTACAGCGAGAG
1 AAGCAGATGCGACAGCAAGAG
* * *
49852182 AAGCAGAGGCCACAGCGAGAG
1 AAGCAGATGCGACAGCAAGAG
49852203 AAGCAG
1 AAGCAG
49852209 CAAGAGAAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.38, C:0.20, G:0.38, T:0.04
Consensus pattern (21 bp):
AAGCAGATGCGACAGCAAGAG
Found at i:49852214 original size:12 final size:12
Alignment explanation
Indices: 49852194--49852241 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
49852184 GCAGAGGCCA
49852194 CAGCGAGAGAAG
1 CAGCGAGAGAAG
*
49852206 CAGCAAGAGAAG
1 CAGCGAGAGAAG
*
49852218 CAGCGAGAGAAA
1 CAGCGAGAGAAG
*
49852230 CAGCGATAGAAG
1 CAGCGAGAGAAG
49852242 TAGAGGTTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.46, C:0.17, G:0.35, T:0.02
Consensus pattern (12 bp):
CAGCGAGAGAAG
Found at i:49852720 original size:43 final size:43
Alignment explanation
Indices: 49852659--49852748 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 43
49852649 ATCAAATAGT
*
49852659 GGCGTTTGTGAAATAAGCGCCGCTAAATA-AACACTACTATTAGC
1 GGCGTTTGTGAAACAAGCGCCGCT--ATAGAACACTACTATTAGC
* * *
49852703 GGCGTTTTTG-AACAAGCGCCGCTATAGAACATTACTTTTAGC
1 GGCGTTTGTGAAACAAGCGCCGCTATAGAACACTACTATTAGC
49852745 GGCG
1 GGCG
49852749 CTATCATCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 3 0.07
42 17 0.41
43 12 0.29
44 9 0.22
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
GGCGTTTGTGAAACAAGCGCCGCTATAGAACACTACTATTAGC
Found at i:49852819 original size:42 final size:42
Alignment explanation
Indices: 49852671--49853008 Score: 382
Period size: 42 Copynumber: 8.0 Consensus size: 42
49852661 CGTTTGTGAA
* **
49852671 ATAAGCGCCGCTAAATAAACACT-A-CTATTAGCGGCGTTTTTGA
1 ATAAGCGCCGCTAAA-GAACA-TGATCT-TTAGCGGCGTTTTTTC
* * * ** *
49852714 ACAAGCGCCGCTATAGAACATTA-CTTTTAGCGGCGCTATCATCC
1 ATAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCG-T-TTTTTC
* *
49852758 A-AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTATC
1 ATAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTC
* *
49852799 CTAAGCGCCGCTAAAAAACATGATCTTTAGCGGCGTTTTTCTC
1 ATAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT-TC
* * *
49852842 -TTAGCACCGCTAAAGAACGTGATCTTTAGCGGCGTTTTTTC
1 ATAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTC
* * *
49852883 ATAAGCGCCGCTAAAGATCATGTTCTTTAGCGGTGTTTTTTC
1 ATAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTC
49852925 ATAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGATTATTTTC
1 ATAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TT-TTTTC
49852969 AT-AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT
1 ATAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT
49853009 TCTGTAAGTG
Statistics
Matches: 254, Mismatches: 31, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
41 9 0.04
42 155 0.61
43 79 0.31
44 11 0.04
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (42 bp):
ATAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTC
Found at i:49855852 original size:29 final size:30
Alignment explanation
Indices: 49855792--49855852 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 30
49855782 GGAGGGGAGG
* * ***
49855792 GGAGTAAAAGTTTTGGGGGGAAAGTGGGAA
1 GGAGTAAAAGTTTTGAGGGAAAAGTAAAAA
49855822 GGAGT-AAAGTTTTGAGGGAAAAGTAAAAA
1 GGAGTAAAAGTTTTGAGGGAAAAGTAAAAA
49855851 GG
1 GG
49855853 TTTGGGAGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.39, C:0.00, G:0.41, T:0.20
Consensus pattern (30 bp):
GGAGTAAAAGTTTTGAGGGAAAAGTAAAAA
Found at i:49855908 original size:9 final size:9
Alignment explanation
Indices: 49855894--49855930 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
49855884 TATAGTTTGA
49855894 TATTCGAAT
1 TATTCGAAT
49855903 TATTCGAAT
1 TATTCGAAT
*
49855912 TATTCGAGT
1 TATTCGAAT
49855921 TATTCGAAT
1 TATTCGAAT
49855930 T
1 T
49855931 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:49856001 original size:9 final size:9
Alignment explanation
Indices: 49855984--49856014 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
49855974 TCGAGTTGAT
49855984 TCGAATAAC
1 TCGAATAAC
*
49855993 TCGATTAAC
1 TCGAATAAC
49856002 TCGAATAAC
1 TCGAATAAC
49856011 TCGA
1 TCGA
49856015 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:49858701 original size:17 final size:17
Alignment explanation
Indices: 49858679--49858722 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
49858669 CCATATTGCC
49858679 CAAAAAAAAAGATGGCG
1 CAAAAAAAAAGATGGCG
49858696 CAAAAAAAAAGATGGCG
1 CAAAAAAAAAGATGGCG
49858713 CAAAAAAAAA
1 CAAAAAAAAA
49858723 CTTTACCGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.66, C:0.11, G:0.18, T:0.05
Consensus pattern (17 bp):
CAAAAAAAAAGATGGCG
Found at i:49861034 original size:88 final size:88
Alignment explanation
Indices: 49860339--49860993 Score: 1013
Period size: 88 Copynumber: 7.4 Consensus size: 88
49860329 GTGAAGATAA
* * *
49860339 CAGATCTTGCCTTCCTGCACCGACAGCGAAGGAGATCGAAGACACCAACCTTGCCTTCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
49860404 GTAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * * * * * *
49860427 GAGATCTTGCCTTCCTGCACTGACAACAAAGCAAATCGAAGACACTAGCCTTGCCTCCCTAGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
49860492 GCAGCGGAGCAGGATAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
49860515 CAGATCTTGCTTTCTTGCACCGACAGCGAAGCAGATCGAAGGCACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
49860580 GTAGCAGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
*
49860603 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCGTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
49860668 GCAGCGGAGCAGATTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
49860691 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACATCAGCCTTGCCTCACTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
49860756 GCAGCAGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
49860779 CAGACCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAGCTTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
49860844 GCAGCGCAGTAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
49860867 CAGATCTTGCCTTTCTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCCTAGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
49860932 GCAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* *
49860955 CAGATCTTGCCTTACTGCACCGACAGGGAAGCAGATCGA
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
49860994 TGACCCCAAC
Statistics
Matches: 510, Mismatches: 57, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 510 1.00
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
GCAGCGGAGCAGGTTAAAAATAG
Found at i:49861500 original size:44 final size:44
Alignment explanation
Indices: 49861445--49861690 Score: 150
Period size: 44 Copynumber: 5.7 Consensus size: 44
49861435 GAAGATGACG
*
49861445 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * *
49861488 TAATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAACCACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
* * * * * * *
49861533 GATTTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T--CA-CATCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA-CA
** * * *
49861574 GGTCTTATCTCCCTGAAGTTGCGGTGGAGTAGACTCAAGAA--AGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AACCA-CA
* * * * * *
49861619 AGTCTTATCCCCCTGAAATTGCAGTGGGGCAGACTAAATA-AACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ACCACA
* * *
49861663 AATCCTGTCTCCCT-AAGTTGTAGTGGAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG
49861691 TGGATTAGAG
Statistics
Matches: 155, Mismatches: 38, Indels: 19
0.73 0.18 0.09
Matches are distributed among these distances:
40 2 0.01
41 30 0.19
43 13 0.08
44 78 0.50
45 31 0.20
46 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA
Found at i:49861681 original size:129 final size:129
Alignment explanation
Indices: 49861447--49861691 Score: 271
Period size: 129 Copynumber: 1.9 Consensus size: 129
49861437 AGATGACGAA
* * * *
49861447 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAATTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAACAATCCTATCCCCCTGAAATTGCA
* * * * ** *
49861512 GTGGAGCGGATTAAAACCACAGATTTTATCTCTCTGAAGTTGCAGTAGAGTAGATCACATCGGG
66 GTGGAGCAGACTAAAACAACAAATCCTATCTCCCTGAAGTTGCAGTAGAGTAGATCACATCGGG
* * * *
49861576 TCTTATCTCCCTGAAGTTGCGGTGGAGTAGACTCAAG-AAAGCAAGTCTTATCCCCCTGAAATTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAA-CAA-TCCTATCCCCCTGAAATTG
* * * *
49861640 CAGTGGGGCAGACTAAATA-AACAAATCCTGTCTCCCT-AAGTTGTAGTGGAGT
64 CAGTGGAGCAGACTAAA-ACAACAAATCCTATCTCCCTGAAGTTGCAGTAGAGT
49861692 GGATTAGAGT
Statistics
Matches: 94, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
128 2 0.02
129 48 0.51
130 43 0.46
131 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGCAAACAATCCTATCCCCCTGAAATTGCA
GTGGAGCAGACTAAAACAACAAATCCTATCTCCCTGAAGTTGCAGTAGAGTAGATCACATCGGG
Found at i:49862066 original size:24 final size:21
Alignment explanation
Indices: 49862002--49862055 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
49861992 TCTTCAAGGA
* *
49862002 TATGTAATATTAGATATGA--
1 TATGCAATCTTAGATATGATT
49862021 TATGCAATCTTAGATATGATT
1 TATGCAATCTTAGATATGATT
49862042 TATGCAATCTTAGA
1 TATGCAATCTTAGA
49862056 AGATATGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 17 0.55
21 14 0.45
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (21 bp):
TATGCAATCTTAGATATGATT
Found at i:49862405 original size:3 final size:3
Alignment explanation
Indices: 49862397--49862444 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
49862387 TATTAAGTTG
* * * * *
49862397 TTA TTA TTA TTA TTG TTG TTG TTA TTA TTA TCA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
49862445 CTATATATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:49862416 original size:18 final size:18
Alignment explanation
Indices: 49862393--49862427 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
49862383 TTGTTATTAA
49862393 GTTGTTATTATTATTATT
1 GTTGTTATTATTATTATT
*
49862411 GTTGTTGTTATTATTAT
1 GTTGTTATTATTATTAT
49862428 CATCATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (18 bp):
GTTGTTATTATTATTATT
Found at i:49862596 original size:17 final size:17
Alignment explanation
Indices: 49862574--49862608 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
49862564 TTTATATACA
*
49862574 TATATACATTTACATTT
1 TATATACATATACATTT
49862591 TATATACATATACATTT
1 TATATACATATACATTT
49862608 T
1 T
49862609 TTATTTCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (17 bp):
TATATACATATACATTT
Found at i:49864869 original size:99 final size:100
Alignment explanation
Indices: 49864697--49864894 Score: 274
Period size: 99 Copynumber: 2.0 Consensus size: 100
49864687 AATATAACTT
* * * * *
49864697 ATTTAAAATATGTAAAGTTAATTTAGTAATTTTCTTGACTGAGTTGGTGCCAAGTTGACTTGTGA
1 ATTTAAAATATGTAAAGTTAATTTAGTAATTTCCTTGACCGAGTTGGTGCCAAGTTAAATTATGA
49864762 CACCAACTC-ATCACACACTTAAAAAATAATATAA
66 CACCAACTCAATCACACACTTAAAAAATAATATAA
* * *
49864796 ATTTAAAATATGTAATGTTATTTTAGTAATTTCCTTGACCGAGTTGGTGTCC-CGTTAAATTATG
1 ATTTAAAATATGTAAAGTTAATTTAGTAATTTCCTTGACCGAGTTGGTG-CCAAGTTAAATTATG
* * *
49864860 ATACTAACTCAATCACACACTTAAATAATAATATA
65 ACACCAACTCAATCACACACTTAAAAAATAATATA
49864895 GATTATGTGA
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
99 61 0.71
100 25 0.29
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.36
Consensus pattern (100 bp):
ATTTAAAATATGTAAAGTTAATTTAGTAATTTCCTTGACCGAGTTGGTGCCAAGTTAAATTATGA
CACCAACTCAATCACACACTTAAAAAATAATATAA
Found at i:49865366 original size:26 final size:27
Alignment explanation
Indices: 49865295--49865366 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
49865285 CAATATGACT
*
49865295 TTTAA-AAAAAAAAGATTAATAGTCAAA
1 TTTAACAAAAAAAAG-TAAATAGTCAAA
*
49865322 TTTAACTAAAATAAA-TAAATA-TCAAA
1 TTTAAC-AAAAAAAAGTAAATAGTCAAA
49865348 -TTAACAAAAAAAATGTAAA
1 TTTAACAAAAAAAA-GTAAA
49865367 CGTAAATACT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
24 7 0.18
25 5 0.13
26 9 0.24
27 10 0.26
29 7 0.18
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (27 bp):
TTTAACAAAAAAAAGTAAATAGTCAAA
Found at i:49868027 original size:16 final size:17
Alignment explanation
Indices: 49868006--49868052 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 17
49867996 CTTGTAGATA
49868006 AATATTAAATT-AATTT
1 AATATTAAATTCAATTT
*
49868022 AATATTAACATAATCACTTT
1 AATATTAA-AT--TCAATTT
49868042 AATATTAAATT
1 AATATTAAATT
49868053 TAATACTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 8 0.31
17 3 0.12
19 3 0.12
20 12 0.46
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
AATATTAAATTCAATTT
Found at i:49872092 original size:13 final size:13
Alignment explanation
Indices: 49872057--49872094 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
49872047 AAGATATTTG
49872057 TAATTTGAAAACT
1 TAATTTGAAAACT
49872070 TAAGTTTGAAAACT
1 TAA-TTTGAAAACT
49872084 TAATTTGAAAA
1 TAATTTGAAAA
49872095 TTTGGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:49872414 original size:34 final size:34
Alignment explanation
Indices: 49872332--49872542 Score: 244
Period size: 34 Copynumber: 6.1 Consensus size: 34
49872322 TCACCTGTCT
* * *
49872332 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATCTTTCCTGTTCACACATCA
* *
49872366 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCA
1 -TTTCTTGCAGGGAATCTTTCCTGTTCACACATCA
* *
49872401 TTTCTTGCAGGGAATCTTTCTTGTTCACGCATCA
1 TTTCTTGCAGGGAATCTTTCCTGTTCACACATCA
* *
49872435 TTTCTTGCAGGGAA-CATTTCCTGTTCACGCATTA
1 TTTCTTGCAGGGAATC-TTTCCTGTTCACACATCA
* * * *
49872469 TTTTGTTGCAGAGAATCTCTCCTATTCACACATCA
1 -TTTCTTGCAGGGAATCTTTCCTGTTCACACATCA
* * *
49872504 TTTCTTACAGGGAATCTTTCATGTTCATACATCA
1 TTTCTTGCAGGGAATCTTTCCTGTTCACACATCA
49872538 TTTCT
1 TTTCT
49872543 GGAATTATTT
Statistics
Matches: 149, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
33 1 0.01
34 92 0.62
35 55 0.37
36 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (34 bp):
TTTCTTGCAGGGAATCTTTCCTGTTCACACATCA
Found at i:49872432 original size:69 final size:68
Alignment explanation
Indices: 49872332--49872542 Score: 253
Period size: 69 Copynumber: 3.1 Consensus size: 68
49872322 TCACCTGTCT
* * * *
49872332 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCA-TTTCTTGCAGGGAATCTTTCCTGTTCACAC
49872397 ATCA
65 ATCA
* *
49872401 TTTCTTGCAGGGAATCTTTCTTGTTCACGCATCATTTCTTGCAGGGAA-CATTTCCTGTTCACGC
1 TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCATTTCTTGCAGGGAATC-TTTCCTGTTCACAC
*
49872465 ATTA
65 ATCA
* * * * * * * *
49872469 TTTTGTTGCAGAGAATCTCTCCTATTCACACATCATTTCTTACAGGGAATCTTTCATGTTCATAC
1 -TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCATTTCTTGCAGGGAATCTTTCCTGTTCACAC
49872534 ATCA
65 ATCA
49872538 TTTCT
1 TTTCT
49872543 GGAATTATTT
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
67 1 0.01
68 32 0.27
69 86 0.72
70 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (68 bp):
TTTCTTGCAGGGAATCTTTCCTGTTCACGCATCATTTCTTGCAGGGAATCTTTCCTGTTCACACA
TCA
Found at i:49872454 original size:16 final size:16
Alignment explanation
Indices: 49872399--49872454 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
49872389 GTTCACACAT
49872399 CATTTCTTGCAGGGAA
1 CATTTCTTGCAGGGAA
* * *
49872415 TC-TTTCTTGTTCACGCAT
1 -CATTTCTTG--CAGGGAA
49872433 CATTTCTTGCAGGGAA
1 CATTTCTTGCAGGGAA
49872449 CATTTC
1 CATTTC
49872455 CTGTTCACGC
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
16 17 0.57
17 2 0.07
18 11 0.37
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (16 bp):
CATTTCTTGCAGGGAA
Found at i:49872500 original size:103 final size:103
Alignment explanation
Indices: 49872332--49872542 Score: 359
Period size: 103 Copynumber: 2.0 Consensus size: 103
49872322 TCACCTGTCT
* * *
49872332 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAACATTTCCTGTTCACGCATTATTTTGTTGCAGAGAATCTCTCCTATTCACAC
* * *
49872397 ATCATTTCTTGCAGGGAATCTTTCTTGTTCACGCATCA
66 ATCATTTCTTACAGGGAATCTTTCATGTTCACACATCA
49872435 TTTCTTGCAGGGAACATTTCCTGTTCACGCATTATTTTGTTGCAGAGAATCTCTCCTATTCACAC
1 TTTCTTGCAGGGAACATTTCCTGTTCACGCATTATTTTGTTGCAGAGAATCTCTCCTATTCACAC
*
49872500 ATCATTTCTTACAGGGAATCTTTCATGTTCATACATCA
66 ATCATTTCTTACAGGGAATCTTTCATGTTCACACATCA
49872538 TTTCT
1 TTTCT
49872543 GGAATTATTT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
103 101 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (103 bp):
TTTCTTGCAGGGAACATTTCCTGTTCACGCATTATTTTGTTGCAGAGAATCTCTCCTATTCACAC
ATCATTTCTTACAGGGAATCTTTCATGTTCACACATCA
Found at i:49879515 original size:26 final size:26
Alignment explanation
Indices: 49879478--49879542 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
49879468 AGTGAGGGTT
* *
49879478 TTAAAAACAAATATAAATT-TATTTGG
1 TTAAAAATAAATATAAATTATAATT-G
*
49879504 TTAAAAATAAATATTAATTATAATTG
1 TTAAAAATAAATATAAATTATAATTG
*
49879530 TTAAACATAAATA
1 TTAAAAATAAATA
49879543 AATACAAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 30 0.88
27 4 0.12
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (26 bp):
TTAAAAATAAATATAAATTATAATTG
Found at i:49883038 original size:13 final size:15
Alignment explanation
Indices: 49883016--49883051 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
49883006 ACCAATTTGT
49883016 AACATATA-TTTTAA
1 AACATATATTTTTAA
49883030 AACAT-TATTTTTAA
1 AACATATATTTTTAA
49883044 AA-ATATAT
1 AACATATAT
49883052 AGTTAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
AACATATATTTTTAA
Found at i:49888610 original size:58 final size:57
Alignment explanation
Indices: 49888523--49889753 Score: 473
Period size: 51 Copynumber: 24.3 Consensus size: 57
49888513 AAGAGTTTTT
* *
49888523 AATTAAATTAGGTTAGGGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTC
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTA-GGTTAGGGATTTC
* * * *
49888581 -ATGTAAAATAGGTTAAGGTTGGGGTTTTTAATTAAATTAGGTTAGGTTAGGGATTTC
1 AAT-TAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * ** *
49888638 AATTAAATTAGGTTAGGGTTAGGGTTTTTAAATAAATTAAATTAGCTTAGGG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * *
49888693 --TT-AATTAAGTTA-TGTTAGGG-TTTTAATT---A-A-GTTATGTTA-GGATTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
** *
49888738 --TT-AATTAAATTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTA-GGTTAGGGATTTC
* * * *
49888790 --TT-AATTAAG-TAGGGTTAGGGTTTTTAATT--AA-A--TTATGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * * *
49888838 AATTTAATTAAGTTA-GGTTAGGTTTTTTAATT---A-A-GTTATGTTAGGG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
** * * *
49888887 --TT-AATTAAATCA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGAG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTA-GGTTAGGGATTTC
* * *
49888939 --TT-AATTAAG-TAGGGTTAGAGTTTTTAATT---A-A-GTTATGTTAGGG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * * *
49888985 --TT-AATTAAGTTA-TGTTAGGGTTTTTAATT--AA-A--TTAGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * * *
49889033 AATTAAATTAGATTAGGGTTAGGGTTTTTAATT-AAGTA-G---GGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * * *
49889085 AATTTAATTAAGTTA-GGTTAGGTTTTTTAATT---A-A-GTTATGTTAGGG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
** *
49889134 --TT-AATTAAATTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTA-GGTTAGGGATTTC
* * *
49889186 --TT-AATTAAG-TAGGGTTAGGGTTTTTAATT--AA-A--TTAGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * *
49889234 AATTAAATTAGGTTAGGGTTAGAGTTTTTAATT-AAGTA-G---GGTTAGAG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * * * *
49889284 --TT-AATTAAGTTA-TGTTAGGGTTTTTAATT---A-A-GTTATGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
*
49889332 AATTAAATTAGGTTA--G--A--GTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTA-GGTTAGGGATTTC
* * * *
49889382 --TT-AATTAAG-TA-GGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * *
49889432 --TT-AATTAAGTTA-TGTTAGGGTTTTTAATTAAATTAGGTTAGAGTT-----TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAG-GTTAGGGATTTC
* * *
49889480 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATT-AAGTA-G---GGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * * * *
49889532 AATTTAATTAAGTTA-GGTTAGGGTTTTTAATT---A-A-GTTATGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
*
49889583 AATTAAATTAGGTTA--G--A--GTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTT-
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTA-GGTTAGGGATTTC
* * * * * *
49889633 --TT-AATTAAG-TAGGGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
* * * * *
49889686 AATTTAATTAAGTTA-GGTTAGGGTTTTTAATT---A-A-GTTATGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
49889737 AATTAAATTAGGTTAGG
1 AATTAAATTAGGTTAGG
49889754 TTTTTAATTA
Statistics
Matches: 968, Mismatches: 96, Indels: 224
0.75 0.07 0.17
Matches are distributed among these distances:
43 2 0.00
44 2 0.00
45 27 0.03
46 164 0.17
47 53 0.05
48 17 0.02
49 3 0.00
50 56 0.06
51 263 0.27
52 248 0.26
53 6 0.01
54 2 0.00
55 2 0.00
56 27 0.03
57 58 0.06
58 38 0.04
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (57 bp):
AATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAAATAGGTTAGGTTAGGGATTTC
Found at i:49888698 original size:23 final size:24
Alignment explanation
Indices: 49888672--49889933 Score: 975
Period size: 23 Copynumber: 50.9 Consensus size: 24
49888662 TTTTTAAATA
*
49888672 AATTAAATTA-GCTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
* *
49888695 AATTAAGTTA-TGTTAGGG-TTTT
1 AATTAAATTAGGGTTAGGGTTTTT
* * *
49888717 AATTAAGTTA-TGTTAGGATTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49888740 AATTAAATTA-GGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49888763 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATT-AA--A--TTAGGGTTAGGGTTTTT
*
49888792 AATT-AAGTAGGGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49888815 AATTAAATTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
* *
49888838 AATTTAATTAAGTTAGGTTAGGTTTTTT
1 AATTAAATT-AG---GGTTAGGGTTTTT
* *
49888866 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49888889 AATTAAATCA-GGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49888912 AATTAAATTAGGTTAGGGTTAGAGTTTTT
1 AATT-AA--A--TTAGGGTTAGGGTTTTT
* *
49888941 AATT-AAGTAGGGTTAGAGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
* *
49888964 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
* *
49888987 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889010 AATTAAATTA-GGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889033 AATTAAATTAGATTAGGGTTAGGGTTTTT
1 AATT--A--A-ATTAGGGTTAGGGTTTTT
*
49889062 AATT-AAGTAGGGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
* *
49889085 AATTTAATTAAGTTAGGTTAGGTTTTTT
1 AATTAAATT-AG---GGTTAGGGTTTTT
* *
49889113 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889136 AATTAAATTA-GGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889159 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATT-AA--A--TTAGGGTTAGGGTTTTT
*
49889188 AATT-AAGTAGGGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889211 AATTAAATTA-GGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49889234 AATTAAATTAGGTTAGGGTTAGAGTTTTT
1 AATT-AA--A--TTAGGGTTAGGGTTTTT
* *
49889263 AATT-AAGTAGGGTTAGAGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
* *
49889286 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
* *
49889309 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49889332 AATTAAATTA-GGTTAGAGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889355 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATT-AA--A--TTAGGGTTAGGGTTTTT
*
49889384 AATT-AAGTA-GGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49889406 AATTTAATTAAGTTAGGTTAGGGTTTTT
1 AATTAAATT-AG---GGTTAGGGTTTTT
* *
49889434 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49889457 AATTAAATTA-GGTTAGAGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889480 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATT-AA--A--TTAGGGTTAGGGTTTTT
*
49889509 AATT-AAGTAGGGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49889532 AATTTAATTAAGTTAGGTTAGGGTTTTT
1 AATTAAATT-AG---GGTTAGGGTTTTT
* *
49889560 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49889583 AATTAAATTA-GGTTAGAGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889606 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATT-AA--A--TTAGGGTTAGGGTTTTT
*
49889635 AATT-AAGTAGGGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49889658 AATTTAATTAAGTTAGGTTAGGGTTTTT
1 AATTAAATT-AG---GGTTAGGGTTTTT
*
49889686 AATTTAATTAAGTTAGGTTAGGGTTTTT
1 AATTAAATT-AG---GGTTAGGGTTTTT
* *
49889714 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889737 AATTAAATTA-GGTTA-GGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
*
49889759 AATTAAATTA-GGTTAGGGTTAGGGTT
1 AATTAAATTAGGGTTAGGGTT---TTT
* * *
49889785 AGGGTTTTTAATTA-AG-TAGGGTTAGGGTTTTT
1 A----ATTAAATTAGGGTTA------GGGTTTTT
* *
49889817 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
* * *
49889840 AATTTAATTAAGTTAGATTAGGTTTTTT
1 AATTAAATT-AG---GGTTAGGGTTTTT
* *
49889868 AATTAAGTTA-TGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889891 AATTAAATTA-GGTTAGGGTTTTT
1 AATTAAATTAGGGTTAGGGTTTTT
49889914 AATTAAATTA-GGTTAGGGTT
1 AATTAAATTAGGGTTAGGGTT
49889934 AGGGTTTTTA
Statistics
Matches: 1044, Mismatches: 96, Indels: 198
0.78 0.07 0.15
Matches are distributed among these distances:
22 60 0.06
23 581 0.56
24 41 0.04
25 14 0.01
26 10 0.01
27 14 0.01
28 173 0.17
29 135 0.13
30 8 0.01
32 3 0.00
35 5 0.00
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (24 bp):
AATTAAATTAGGGTTAGGGTTTTT
Found at i:49888889 original size:126 final size:123
Alignment explanation
Indices: 49888615--49889955 Score: 1154
Period size: 126 Copynumber: 10.7 Consensus size: 123
49888605 TTTTTAATTA
* * * *
49888615 AATTAGGTTAGGTTAGGGATTTCAATTAAATTAGGTTAGGGTTAGGGTTTTTAAATAAATTAAAT
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT---G-TTTT---T-AATTAAGT
* * * *
49888680 TAGCTTAGGGTTTTTAATTAAGTTATGTTAGGG----T--TTTAATTAAGTTATGTTAGGATTTT
58 TAGGTTAGGGTTTTTAATTAAATTATGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTT
49888739 T
123 T
*
49888740 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAG-TAGGG
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT---GTTTTTAATTAAGTTA-GG
49888804 TTAGGGTTTTTAATTAAATTATGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTT
62 TTAGGGTTTTTAATTAAATTATGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTT
* * *
49888866 AATTAAGTTATGTTAGGGTTTTTAATTAAATCAGGTTAGGGTT-TTTAATTAAATTAGGTTAGGG
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTGTTT--TT-AATTAAGTTA-GG
* * * * * *
49888930 TTAGAGTTTTTAATT-AAGTAGGGTTAGAG---TT--TTTAATTAAGTTATGTTAGGGTTTTT
62 TTAGGGTTTTTAATTAAATTA-TGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTT
*
49888987 AATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT-TTTAATTAAATT-AGATTAGG
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTGTTT--TT-AATTAAG-TTA-G
* *
49889050 GTTAGGGTTTTTAATT-AAGTAGGGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTT
61 GTTAGGGTTTTTAATTAAATTA-TGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTT
* *
49889113 AATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT-TTTAATTAAATTAGGTTAGGG
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTGTTT--TT-AATTAAGTTA-GG
* * *
49889177 TTAGGGTTTTTAATT-AAGTAGGGTTAGGGTTTTTAA-TT-A--AA-TTAGGTTAGGGTTTTT
62 TTAGGGTTTTTAATTAAATTA-TGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTT
* *
49889234 AATTAAATTAGGTTAGGGTTAGAGTTT--TT-AATTAAG-TAGGGTTAGAGTTTTTAATTAAGTT
1 AATTAAGTTAGGTTAGGGTT----TTTAATTAAATTAGGTTAGGGTT---GTTTTTAATTAAGTT
* * * *
49889295 ATGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGAGTT---TTTAA
59 AGGTTAGGGTTTTTAATTAAATTATGTTAGGGTTTTTAATTTAATTAAGTTAG-GTTAGGTTT--
*
49889357 TTA
121 TTT
* * *
49889360 AATTAGGTTAGGGTTAGGGTTTTTAATT-AAGTAGGTTAGGGTTTTTAATTTAATTAAGTTAGGT
1 AATTAAGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTGTT--TTTAATTAAGTTAGGT
* * * *
49889424 TAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGAGTT---TTTAATTA
63 TAGGGTTTTTAATTAAATTATGTTAGGGTTTTTAATTTAATTAAGTTAG-GTTAGGTTT--TTT
* * *
49889485 AATTAGGTTAGGGTTAGGGTTTTTAATT-AAGTAGGGTTAGGGTTTTTAATTTAATTAAGTTAGG
1 AATTAAGTTA-GGTTAGGGTTTTTAATTAAATTA-GGTTAGGGTTGTT--TTTAATTAAGTTAGG
* * * *
49889549 TTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGAGTT---TTTAATTA
62 TTAGGGTTTTTAATTAAATTATGTTAGGGTTTTTAATTTAATTAAGTTAG-GTTAGGTTT--TTT
* * *
49889611 AATTAGGTTAGGGTTAGGGTTTTTAATT-AAGTAGGGTTAGGGTTTTTAATTTAATTAAGTTAGG
1 AATTAAGTTA-GGTTAGGGTTTTTAATTAAATTA-GGTTAGGGTTGTT--TTTAATTAAGTTAGG
* * * * *
49889675 TTAGGGTTTTTAATTTAATTAAGTTA-GGTTAGGGTT--TTTAATTAAGTTATGTTAGGGTTTTT
62 TTAGGGTTTTTAATTAAATTATGTTAGGGTT---TTTAATTTAATTAAGTTAGGTTAGGTTTTTT
*
49889737 AATTAAATTAGGTTA-GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAG
1 AATTAAGTTAGGTTAGGGTTTTTAATT-AA--A--TTA-GGTTAGGGTT---GTTTTTAATTAAG
* *
49889801 -TAGGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAATTTAATTAAGTTAGATTAGGTTT
57 TTA-GGTTAGGGTTTTTAATTAAATTATGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTT
49889865 TTT
121 TTT
* *
49889868 AATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT-TTTAATTAAATTAGGTTAGGG
1 AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTGTTT--TT-AATTAAGTTA-GG
* *
49889932 TTAGGGTTTTTAATCAAATAATGT
62 TTAGGGTTTTTAATTAAATTATGT
49889956 CAAAATAACT
Statistics
Matches: 1078, Mismatches: 71, Indels: 133
0.84 0.06 0.10
Matches are distributed among these distances:
119 2 0.00
120 36 0.03
121 182 0.17
122 27 0.03
123 12 0.01
124 25 0.02
125 196 0.18
126 468 0.43
127 17 0.02
128 5 0.00
129 3 0.00
130 15 0.01
131 73 0.07
132 15 0.01
133 2 0.00
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (123 bp):
AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTGTTTTTAATTAAGTTAGGTTAG
GGTTTTTAATTAAATTATGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTT
Found at i:49889793 original size:35 final size:34
Alignment explanation
Indices: 49889747--49889813 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 34
49889737 AATTAAATTA
*
49889747 GGTTAGGTTTTTAATTAAATTA-GGTTAGGGTTAG
1 GGTTAGGTTTTTAATT-AAGTAGGGTTAGGGTTAG
49889781 GGTTAGGGTTTTTAATTAAGTAGGGTTAGGGTT
1 GGTTA-GGTTTTTAATTAAGTAGGGTTAGGGTT
49889814 TTTAATTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 9 0.30
35 21 0.70
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (34 bp):
GGTTAGGTTTTTAATTAAGTAGGGTTAGGGTTAG
Found at i:49889937 original size:149 final size:149
Alignment explanation
Indices: 49888539--49889945 Score: 1444
Period size: 149 Copynumber: 9.3 Consensus size: 149
49888529 ATTAGGTTAG
* * * * * *
49888539 GGTTAGGGATTTTAATTAAAATAGGTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAAGGTTGGG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTT--T-T-AATTAAG-TAGGGTTAGG
* * * *
49888604 GTTTTTAATTAAATTAGGTTAGGTTAGGGATTTCAATTAAATTAGGTTAGGGTTAGGGTTTTTAA
60 GTTTTTAATT--A--A-GTTAGGTTAGGGTTTTTAATTTAATTAAGTTA-GGTTA-GGTTTTT--
* *
49888669 ATAAATTAAATTA-GCTTAGGGTTTTTAATTAAGTTA
116 -T-AATTAAGTTATG-TTAGGGTTTTTAATTAAATTA
* * * *
49888705 TGTTAGGG-TTTTAATT--A--A-GTTA-TGTTAGGATTTTTAATTAAATTA-GGTTAGGGTTTT
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT-AAGTAGGGTTAGGGTTTT
* * * *
49888762 TAATTAAATTAGGTTAGGGTTAGGGTT--TTTAATTAAG-TAGGGTTAGGGTTTTTAATTAAATT
65 TAATTAAGTTAGGTTAGGGTT---TTTAATTTAATTAAGTTA-GGTTAGGTTTTTTAATTAAGTT
*
49888824 ATGTTAGGGTTTTTAATTTAATTA
126 ATGTTAGGGTTTTTAATTAAATTA
* * * * *
49888848 AGTTA-GGTTAGGTTT--TTTAATTAAGTTA-TGTTAGGGTTTTTAATTAAATCA-GGTTAGGGT
1 GGTTAGGGTT---TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGT-AGGGTTAGGGT
* *
49888908 TTTTAATTAAATTAGGTTAGGGTTAGAGTT--TTTAATTAAG-TAGGGTTAGAG-TTTTTAATTA
62 TTTTAATTAAGTTAGGTTAGGGTT---TTTAATTTAATTAAGTTA-GGTTAG-GTTTTTTAATTA
*
49888969 AGTTATGTTAGGGTTTTTAATTAAGTTA
122 AGTTATGTTAGGGTTTTTAATTAAATTA
* *
49888997 TGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT----TTTAATTAAATTAGATTAGGGTTAGGGT
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT--TT-AATTA-AGTAGGGTTAGGGT
49889058 TTTTAATTAAG-TAGGGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTT
62 TTTTAATTAAGTTA-GGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTT
49889122 ATGTTAGGGTTTTTAATTAAATTA
126 ATGTTAGGGTTTTTAATTAAATTA
49889146 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTAGGGTTTTT
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTAGGGTTTTT
* * * *
49889211 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGAG-TTTTTAATTAAG-TAGG
66 AATTAAGTTAGGTTAGGGTTTTTAATTTAATTAAGTTA-GGTTAG-GTTTTTTAATTAAGTTA-T
* *
49889274 GTTAGAGTTTTTAATTAAGTTA
128 GTTAGGGTTTTTAATTAAATTA
* * * *
49889296 TGTTAGGGTTTTTAATT--A--A-GTTA-TGTTAGGGTTTTTAATTAAATTA-GGTTAGAGTTTT
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT-AAGTAGGGTTAGGGTTTT
* *
49889354 TAATTAAATTAGGTTAGGGTTAGGGTT--TTTAATTAAG-TAGGTTAGGGTTTTTAATTTAATTA
65 TAATTAAGTTAGGTTAGGGTT---TTTAATTTAATTAAGTTAGGTTA-GG--TTT--TTTAATTA
* *
49889416 AGTTAGGTTAGGGTTTTTAATTAAGTTA
122 AGTTATGTTAGGGTTTTTAATTAAATTA
* * *
49889444 TGTTAGGGTTTTTAATTAAATTAGGTTAGAGTT----TTTAATTAAATTAGGTTAGGGTTAGGGT
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT--TT-AATTAAG-TAGGGTTAGGGT
*
49889505 TTTTAATTAAG-TAGGGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGGTTTTTAATTAAGTT
62 TTTTAATTAAGTTA-GGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTT
49889569 ATGTTAGGGTTTTTAATTAAATTA
126 ATGTTAGGGTTTTTAATTAAATTA
*
49889593 GGTTAGAGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTAGGGTTTTT
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTAGGG---TT
*
49889658 AATTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGGTTTTTAATTAAGTT
63 --TTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTT
49889723 ATGTTAGGGTTTTTAATTAAATTA
126 ATGTTAGGGTTTTTAATTAAATTA
49889747 GGTTA-GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTAGG
1 GGTTAGGGTTTTTAATT-AA--A--TTA-GGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTAGG
* *
49889811 GTTTTTAATTAAGTTATGTTAGGGTTTTTAATTTAATTAAGTTAGATTAGGTTTTTTAATTAAGT
60 GTTTTTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTTAATTAAGT
49889876 TATGTTAGGGTTTTTAATTAAATTA
125 TATGTTAGGGTTTTTAATTAAATTA
49889901 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAAT
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAAT
49889946 CAAATAATGT
Statistics
Matches: 1096, Mismatches: 64, Indels: 179
0.82 0.05 0.13
Matches are distributed among these distances:
142 2 0.00
143 40 0.04
144 55 0.05
145 16 0.01
146 10 0.01
147 13 0.01
148 77 0.07
149 380 0.35
150 115 0.10
151 11 0.01
152 7 0.01
153 56 0.05
154 225 0.21
155 15 0.01
156 4 0.00
158 6 0.01
159 43 0.04
160 4 0.00
161 1 0.00
163 1 0.00
165 8 0.01
166 7 0.01
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (149 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTAGGGTTTTT
AATTAAGTTAGGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTTATGTT
AGGGTTTTTAATTAAATTA
Found at i:49892105 original size:14 final size:15
Alignment explanation
Indices: 49892088--49892121 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
49892078 AATAAATATC
49892088 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
49892102 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
49892117 TAAAA
1 TAAAA
49892122 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:49892282 original size:27 final size:27
Alignment explanation
Indices: 49892219--49892273 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
49892209 TTGAAAATAT
49892219 TAAAAATTTTAAAATTATTTAAAAAAA
1 TAAAAATTTTAAAATTATTTAAAAAAA
*
49892246 TAAAAAATTTTAAAATTTTCTTAAAAAA
1 T-AAAAATTTTAAAATTAT-TTAAAAAA
49892274 GTGAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 1 0.04
28 16 0.64
29 8 0.32
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (27 bp):
TAAAAATTTTAAAATTATTTAAAAAAA
Found at i:49892347 original size:22 final size:22
Alignment explanation
Indices: 49892317--49892358 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
49892307 ATTTGGAGAT
*
49892317 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
49892339 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
49892359 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:49892366 original size:30 final size:30
Alignment explanation
Indices: 49892330--49892388 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
49892320 TTGAAGGAAA
*
49892330 TTGAGAGGATTTTGGAA-GGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGGAA-TTGAGAGT
49892360 TTGAGAGAATTTTGGAAGGGAATTGAGAG
1 TTGAGAGAATTTTGGAAGGGAATTGAGAG
49892389 AATTTTTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.32, C:0.00, G:0.37, T:0.31
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGGAATTGAGAGT
Found at i:49892384 original size:52 final size:51
Alignment explanation
Indices: 49892308--49892407 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 51
49892298 TTAATATGGA
* * * *
49892308 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAAGGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGAGAG
* *
49892359 TTTGAGAGAATTTTGGAAGGGAATTGAGAGAATTTTTGAAGGAAATTGA
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGA
49892408 TATTGAATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 4 0.10
52 38 0.90
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGAGAG
Found at i:49892385 original size:22 final size:22
Alignment explanation
Indices: 49892360--49892407 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
49892350 ATTTGAGAGT
*
49892360 TTGAGAGAATTTTGGAAGGGAA
1 TTGAGAGAATTTTGGAAGGAAA
*
49892382 TTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
49892404 TTGA
1 TTGA
49892408 TATTGAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:49892844 original size:30 final size:30
Alignment explanation
Indices: 49892805--49892863 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
49892795 GAAGGTGGGA
*
49892805 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAA-ATTTAGGGGAAAAG
* *
49892836 TGGG-AGGGAGTAAAAATTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTAGGGGAAAA
49892864 ATAAAAGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.44
30 10 0.40
31 4 0.16
ACGTcount: A:0.41, C:0.00, G:0.41, T:0.19
Consensus pattern (30 bp):
TGGGAAGGGAATAAAAATTTAGGGGAAAAG
Found at i:49893514 original size:21 final size:21
Alignment explanation
Indices: 49893488--49893530 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
49893478 CTAAACAATA
*
49893488 TAATGGTTTTGCCTTATAACT
1 TAATGGTTTTGACTTATAACT
*
49893509 TAATGGTTTTGACTTTTAACT
1 TAATGGTTTTGACTTATAACT
49893530 T
1 T
49893531 TAGAAGAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.12, G:0.14, T:0.51
Consensus pattern (21 bp):
TAATGGTTTTGACTTATAACT
Found at i:49893886 original size:29 final size:29
Alignment explanation
Indices: 49893853--49893908 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
49893843 AAGGCCGGTT
49893853 TTTTTTCAA-AATTTACCGGAATGGGCCGG
1 TTTTTT-AATAATTTACCGGAATGGGCCGG
*
49893882 TTTTTTAATTATTTACCGGAATGGGCC
1 TTTTTTAATAATTTACCGGAATGGGCC
49893909 ATTTTCCGCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (29 bp):
TTTTTTAATAATTTACCGGAATGGGCCGG
Found at i:49905945 original size:42 final size:42
Alignment explanation
Indices: 49905872--49905974 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 42
49905862 CTGAACACGC
* * *
49905872 TAACAGAAGCTCATAAGAGTTGAATAGAAACTCAAAAGAGCT
1 TAACAGAAGCTCATAAGAGCTAAACAGAAACTCAAAAGAGCT
* ** *
49905914 TAACAGAAGCTCA-AATGAGCTAAACATAAACTCGTAAGAGGT
1 TAACAGAAGCTCATAA-GAGCTAAACAGAAACTCAAAAGAGCT
* *
49905956 GAACAGAAGCTCGTAAGAG
1 TAACAGAAGCTCATAAGAG
49905975 GTGATCCACC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
41 2 0.04
42 46 0.92
43 2 0.04
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (42 bp):
TAACAGAAGCTCATAAGAGCTAAACAGAAACTCAAAAGAGCT
Found at i:49905978 original size:21 final size:21
Alignment explanation
Indices: 49905873--49905974 Score: 89
Period size: 21 Copynumber: 4.9 Consensus size: 21
49905863 TGAACACGCT
*
49905873 AACAGAAGCTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTG
* * * *
49905894 AATAGAAACTCAAAAGAGCTT
1 AACAGAAGCTCATAAGAGCTG
*
49905915 AACAGAAGCTCA-AATGAGCTA
1 AACAGAAGCTCATAA-GAGCTG
* * * *
49905936 AACATAAACTCGTAAGAGGTG
1 AACAGAAGCTCATAAGAGCTG
*
49905957 AACAGAAGCTCGTAAGAG
1 AACAGAAGCTCATAAGAG
49905975 GTGATCCACC
Statistics
Matches: 64, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
20 2 0.03
21 60 0.94
22 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.22, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:49907354 original size:20 final size:22
Alignment explanation
Indices: 49907320--49907360 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
49907310 CTTTACTTTT
*
49907320 CACACTCATTCCATATGCATAA
1 CACACTCATTCCATAAGCATAA
49907342 CACAC-CATT-CATAAGCATA
1 CACACTCATTCCATAAGCATA
49907361 TTATTCAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 4 0.22
22 5 0.28
ACGTcount: A:0.39, C:0.32, G:0.05, T:0.24
Consensus pattern (22 bp):
CACACTCATTCCATAAGCATAA
Found at i:49907933 original size:42 final size:42
Alignment explanation
Indices: 49907866--49907988 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
49907856 GGCTAAATAG
** * *
49907866 AAGCTCATGAGAGCTAAACGGAAACCCATAAGGGTTGAACAA
1 AAGCTCAAAAGAGCTGAACGAAAACCCATAAGGGTTGAACAA
*** * * * **
49907908 AAGCTTGTAAGAGCTGAACGAAAACCTATAAGAGTTAAACTG
1 AAGCTCAAAAGAGCTGAACGAAAACCCATAAGGGTTGAACAA
*
49907950 AAGCTCAAAAGAGCTGAACGAAAACCCATTAGGGTTGAA
1 AAGCTCAAAAGAGCTGAACGAAAACCCATAAGGGTTGAA
49907989 TGGAAACTCA
Statistics
Matches: 64, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (42 bp):
AAGCTCAAAAGAGCTGAACGAAAACCCATAAGGGTTGAACAA
Found at i:49907939 original size:21 final size:21
Alignment explanation
Indices: 49907875--49907975 Score: 55
Period size: 21 Copynumber: 4.8 Consensus size: 21
49907865 GAAGCTCATG
* * *
49907875 AGAGCTAAACGGAAACCCATA
1 AGAGCTGAACGAAAACCTATA
* * * *
49907896 AGGGTTGAAC-AAAAGCTTGTA
1 AGAGCTGAACGAAAA-CCTATA
49907917 AGAGCTGAACGAAAACCTATA
1 AGAGCTGAACGAAAACCTATA
* * * *
49907938 AGAGTTAAACTG--AAGCTCAAA
1 AGAGCTGAAC-GAAAACCT-ATA
49907959 AGAGCTGAACGAAAACC
1 AGAGCTGAACGAAAACC
49907976 CATTAGGGTT
Statistics
Matches: 56, Mismatches: 18, Indels: 11
0.66 0.21 0.13
Matches are distributed among these distances:
20 8 0.14
21 40 0.71
22 8 0.14
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.15
Consensus pattern (21 bp):
AGAGCTGAACGAAAACCTATA
Found at i:49908123 original size:24 final size:24
Alignment explanation
Indices: 49908091--49908179 Score: 142
Period size: 24 Copynumber: 3.7 Consensus size: 24
49908081 GGTACATTTG
* *
49908091 CCGTTAATTCATCATTTGCATATA
1 CCGTCAATTCATCCTTTGCATATA
* *
49908115 TCGCCAATTCATCCTTTGCATATA
1 CCGTCAATTCATCCTTTGCATATA
49908139 CCGTCAATTCATCCTTTGCATATA
1 CCGTCAATTCATCCTTTGCATATA
49908163 CCGTCAATTCATCCTTT
1 CCGTCAATTCATCCTTT
49908180 ACCACAAAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.25, C:0.28, G:0.08, T:0.39
Consensus pattern (24 bp):
CCGTCAATTCATCCTTTGCATATA
Found at i:49909546 original size:25 final size:24
Alignment explanation
Indices: 49909488--49909581 Score: 161
Period size: 24 Copynumber: 3.9 Consensus size: 24
49909478 TGGGTACATT
49909488 TACCGTCAATTCATCCTTTGCATA
1 TACCGTCAATTCATCCTTTGCATA
*
49909512 TACCGTCAATTCATCCTTTGCATTT
1 TACCGTCAATTCATCCTTTGCA-TA
49909537 TACCGTCAATTCATCCTTTGCATA
1 TACCGTCAATTCATCCTTTGCATA
*
49909561 TACCGTCAATTCATCATTTGC
1 TACCGTCAATTCATCCTTTGC
49909582 CACAGAACGA
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
24 43 0.65
25 23 0.35
ACGTcount: A:0.23, C:0.29, G:0.09, T:0.39
Consensus pattern (24 bp):
TACCGTCAATTCATCCTTTGCATA
Found at i:49909555 original size:49 final size:49
Alignment explanation
Indices: 49909486--49909581 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
49909476 CTTGGGTACA
*
49909486 TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCCTTTGCAT
1 TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCATTTGCAT
49909535 TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCATTTGC
1 TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCATTTGC
49909582 CACAGAACGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.23, C:0.28, G:0.08, T:0.41
Consensus pattern (49 bp):
TTTACCGTCAATTCATCCTTTGCATATACCGTCAATTCATCATTTGCAT
Found at i:49912670 original size:46 final size:46
Alignment explanation
Indices: 49912596--49912872 Score: 437
Period size: 46 Copynumber: 6.0 Consensus size: 46
49912586 ACATTGCTAT
* *
49912596 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* * *
49912642 AACTCAGTATGGTTTTCTTTACCAAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* * *
49912688 AACTCAATATGGTTTTCTTTACCGAAACACCATACCTACTTTTAAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* *
49912734 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
** *
49912780 AACTCAGTATGGTTTTCTTCACTAAAACACCATACCTACTTTTCAT
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
49912826 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
49912872 A
1 A
49912873 CTTTGCCATG
Statistics
Matches: 212, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 212 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
Found at i:49912844 original size:138 final size:138
Alignment explanation
Indices: 49912596--49912868 Score: 492
Period size: 138 Copynumber: 2.0 Consensus size: 138
49912586 ACATTGCTAT
49912596 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
1 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
* * *
49912661 TACCAAAATACCATACCTACTTTTCACAACTCAATATGGTTTTCTTTACCGAAACACCATACCTA
66 CACCAAAACACCATACCTACTTTTCACAACTCAATATGGTTTTCTTCACCGAAACACCATACCTA
49912726 CTTTTAAC
131 CTTTTAAC
49912734 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
1 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
* * *
49912799 CACTAAAACACCATACCTACTTTTCATAACTCAGTATGGTTTTCTTCACCGAAACACCATACCTA
66 CACCAAAACACCATACCTACTTTTCACAACTCAATATGGTTTTCTTCACCGAAACACCATACCTA
49912864 CTTTT
131 CTTTT
49912869 CACACTTTGC
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 129 1.00
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (138 bp):
AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
CACCAAAACACCATACCTACTTTTCACAACTCAATATGGTTTTCTTCACCGAAACACCATACCTA
CTTTTAAC
Found at i:49917656 original size:44 final size:42
Alignment explanation
Indices: 49917593--49917706 Score: 147
Period size: 44 Copynumber: 2.7 Consensus size: 42
49917583 ACTGTGACAT
* *
49917593 CGTGTAAGACCACGTCTGGGACATTGGCCTCGATTTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCCTC-ATATGAGA-TTA
* *
49917637 CGTGTAAGACCATGTCTGGGACATTGGCGTCATATGTGATTA
1 CGTGTAAGACCATGTCTGGGACATTGGCCTCATATGAGATTA
* * *
49917679 CGTGTAAGACCCTGTCTGAGACAGTGGC
1 CGTGTAAGACCATGTCTGGGACATTGGC
49917707 ATAGTTATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
42 28 0.44
43 6 0.10
44 29 0.46
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCCTCATATGAGATTA
Found at i:49917695 original size:42 final size:44
Alignment explanation
Indices: 49917593--49917706 Score: 144
Period size: 42 Copynumber: 2.6 Consensus size: 44
49917583 ACTGTGACAT
*
49917593 CGTGTAAGACCAC-GTCTGGGACATTGGCCTCGATTTGAGATTTA
1 CGTGTAAGACC-CTGTCTGGGACATTGGCCTCGATATGAGATTTA
* * *
49917637 CGTGTAAGACCATGTCTGGGACATTGGCGTC-ATATGTGA-TTA
1 CGTGTAAGACCCTGTCTGGGACATTGGCCTCGATATGAGATTTA
* *
49917679 CGTGTAAGACCCTGTCTGAGACAGTGGC
1 CGTGTAAGACCCTGTCTGGGACATTGGC
49917707 ATAGTTATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 28 0.45
43 6 0.10
44 28 0.45
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (44 bp):
CGTGTAAGACCCTGTCTGGGACATTGGCCTCGATATGAGATTTA
Found at i:49919140 original size:32 final size:31
Alignment explanation
Indices: 49919104--49919176 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 31
49919094 GAGTATATTG
49919104 AATGGTTATGAGACATGTCTATATAAATGAC
1 AATGGTTATGAGACATGTCTATATAAATGAC
49919135 AAATGGTTATGAGACATGTCTATATAAATGAC
1 -AATGGTTATGAGACATGTCTATATAAATGAC
49919167 AATGTGTTAT
1 AATG-GTTAT
49919177 TATTCATGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
31 4 0.10
32 36 0.90
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.34
Consensus pattern (31 bp):
AATGGTTATGAGACATGTCTATATAAATGAC
Found at i:49922332 original size:27 final size:27
Alignment explanation
Indices: 49922276--49922336 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
49922266 ACATCATACA
* * * *
49922276 TAGTCTGTTGGGACATTAAATATGGAG
1 TAGTTTGTCGGGACATTAAACAAGGAG
49922303 TAGTTTGTCGGGACATTAAACACAGG-G
1 TAGTTTGTCGGGACATTAAACA-AGGAG
49922330 TAGTTTG
1 TAGTTTG
49922337 CTAGGACGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.28, C:0.10, G:0.30, T:0.33
Consensus pattern (27 bp):
TAGTTTGTCGGGACATTAAACAAGGAG
Found at i:49926181 original size:13 final size:13
Alignment explanation
Indices: 49926163--49926187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49926153 TCAAATTATT
49926163 TTTTTATTTTTTA
1 TTTTTATTTTTTA
49926176 TTTTTATTTTTT
1 TTTTTATTTTTT
49926188 GCGCAATGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:49929671 original size:39 final size:39
Alignment explanation
Indices: 49929628--49929702 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
49929618 TGCCAACTTG
49929628 CAAATCACATTACCATTCACTTTTCCAACCAAAACAAAC
1 CAAATCACATTACCATTCACTTTTCCAACCAAAACAAAC
49929667 CAAATCACATTACCATTCACTTTTCCAACCAAAACA
1 CAAATCACATTACCATTCACTTTTCCAACCAAAACA
49929703 CATCTCCAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (39 bp):
CAAATCACATTACCATTCACTTTTCCAACCAAAACAAAC
Found at i:49930916 original size:34 final size:35
Alignment explanation
Indices: 49930848--49930917 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 35
49930838 TCCATCTTTC
* * *
49930848 TCAATTCATTATCATATCATATAACACATTTCAAT
1 TCAATTCAATATCATATCAAATAACACATATCAAT
* *
49930883 TCAATTCAAT-TCATATCAAATATCATATATCAAT
1 TCAATTCAATATCATATCAAATAACACATATCAAT
49930917 T
1 T
49930918 AAGTAATTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
34 21 0.70
35 9 0.30
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.40
Consensus pattern (35 bp):
TCAATTCAATATCATATCAAATAACACATATCAAT
Found at i:49931791 original size:19 final size:19
Alignment explanation
Indices: 49931764--49931801 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
49931754 AGTTTATTAA
49931764 TTAAACTTAATTAATTATT
1 TTAAACTTAATTAATTATT
* *
49931783 TTAATCTTAGTTAATTATT
1 TTAAACTTAATTAATTATT
49931802 CATTTATCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (19 bp):
TTAAACTTAATTAATTATT
Found at i:49932495 original size:31 final size:31
Alignment explanation
Indices: 49932438--49932496 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
49932428 CGTCTAAGTT
* **
49932438 AGGACTAAAATTTCAAAATTTGAAAAATACA
1 AGGACTAAAATTACAAAATTAAAAAAATACA
49932469 AGGACTAAAATTAACAAAA-TAAAAAAAT
1 AGGACTAAAATT-ACAAAATTAAAAAAAT
49932497 TATAAGAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 19 0.79
32 5 0.21
ACGTcount: A:0.61, C:0.08, G:0.08, T:0.22
Consensus pattern (31 bp):
AGGACTAAAATTACAAAATTAAAAAAATACA
Found at i:49942652 original size:12 final size:13
Alignment explanation
Indices: 49942630--49942660 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
49942620 TTTTTTCCTA
49942630 AAAATAGAAAAAG
1 AAAATAGAAAAAG
49942643 AAAA-AGAAAAAG
1 AAAATAGAAAAAG
49942655 AAAATA
1 AAAATA
49942661 CTTTTTAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (13 bp):
AAAATAGAAAAAG
Found at i:49943953 original size:73 final size:73
Alignment explanation
Indices: 49943834--49943980 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
49943824 CAAATTAATT
49943834 TCTTGTAATAGCAAATCTATAACAGAAATGAATGTATCAAATTGATAGTGATGCTCAATTGTAAG
1 TCTTGTAATAGCAAATCTATAACAGAAATGAATGTATCAAATTGATAGTGATGCTCAATTGTAAG
49943899 GCTATCTC
66 GCTATCTC
49943907 TCTTGTAATAGCAAATCTATAACAGAAATGAATGTATCAAATTGATAGTGATGCTCAATTGTAAG
1 TCTTGTAATAGCAAATCTATAACAGAAATGAATGTATCAAATTGATAGTGATGCTCAATTGTAAG
49943972 GCTATCTC
66 GCTATCTC
49943980 T
1 T
49943981 TTGATTGCGA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (73 bp):
TCTTGTAATAGCAAATCTATAACAGAAATGAATGTATCAAATTGATAGTGATGCTCAATTGTAAG
GCTATCTC
Found at i:49949616 original size:18 final size:17
Alignment explanation
Indices: 49949583--49949621 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
49949573 TTTTATAAAT
49949583 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
49949601 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
49949618 TGTG
1 TGTG
49949622 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:49949876 original size:23 final size:23
Alignment explanation
Indices: 49949849--49949968 Score: 159
Period size: 23 Copynumber: 5.2 Consensus size: 23
49949839 TGTTATTGAT
* **
49949849 CAGTGGTAGCTTCGGCTACGTTT
1 CAGTGGTAGCTTCGGCTACATAA
*
49949872 TAGTGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATAA
* **
49949895 CAGTGGTAGCTTCAGCTACATTT
1 CAGTGGTAGCTTCGGCTACATAA
49949918 CAGTGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATAA
* *
49949941 CAGTGGTAGCTTCGGATACATAT
1 CAGTGGTAGCTTCGGCTACATAA
49949964 CAGTG
1 CAGTG
49949969 TTGCACTTAT
Statistics
Matches: 84, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 84 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACATAA
Found at i:49949923 original size:46 final size:46
Alignment explanation
Indices: 49949849--49949968 Score: 195
Period size: 46 Copynumber: 2.6 Consensus size: 46
49949839 TGTTATTGAT
* *
49949849 CAGTGGTAGCTTCGGCTACGTTTTAGTGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
*
49949895 CAGTGGTAGCTTCAGCTACATTTCAGTGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
* *
49949941 CAGTGGTAGCTTCGGATACATATCAGTG
1 CAGTGGTAGCTTCGGCTACATTTCAGTG
49949969 TTGCACTTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
Found at i:49951453 original size:51 final size:51
Alignment explanation
Indices: 49951377--49951479 Score: 163
Period size: 51 Copynumber: 2.0 Consensus size: 51
49951367 TTTAGTCAAC
*
49951377 ATACATGTATTACATTTTTCAATATTATTATTAAATAT-GGAAATTAAATCT
1 ATACATGTATTACATTTTTCAATATTATTATTAAAAATAGG-AATTAAATCT
* *
49951428 ATACATGTATTGCATTTTTTAATATTATTATTAAAAATAGGAATTAAATCT
1 ATACATGTATTACATTTTTCAATATTATTATTAAAAATAGGAATTAAATCT
49951479 A
1 A
49951480 ACTTATGCAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
51 46 0.96
52 2 0.04
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.45
Consensus pattern (51 bp):
ATACATGTATTACATTTTTCAATATTATTATTAAAAATAGGAATTAAATCT
Found at i:49953139 original size:21 final size:21
Alignment explanation
Indices: 49953114--49953153 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
49953104 TGTACTAAAA
49953114 ATAATAAACAACATTATATAT
1 ATAATAAACAACATTATATAT
* * *
49953135 ATAATCAACATCTTTATAT
1 ATAATAAACAACATTATAT
49953154 CGCTTATAAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAATAAACAACATTATATAT
Found at i:49957358 original size:34 final size:34
Alignment explanation
Indices: 49957274--49957342 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
49957264 CTGCAATTTG
*
49957274 AAACACGAGGTCATTTTGAACTTTAGATGGAATC
1 AAACACGAGGTCATTTTGAACTGTAGATGGAATC
49957308 AAACACGAGGTCATTTTGAACTGTAGATGGAATC
1 AAACACGAGGTCATTTTGAACTGTAGATGGAATC
49957342 A
1 A
49957343 GTAAATTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (34 bp):
AAACACGAGGTCATTTTGAACTGTAGATGGAATC
Found at i:49965906 original size:45 final size:45
Alignment explanation
Indices: 49965840--49965945 Score: 124
Period size: 45 Copynumber: 2.4 Consensus size: 45
49965830 GACTCGTATC
* *
49965840 ACCATAGTTGAAAGACACTATGACATCATGAT-TAAGATAAGTAAG
1 ACCATAGCTGAAAGACACTATGACATCATGATATAA-ATAAGTAAA
** * *
49965885 ACCATAGCTGAAAGATGCTATGACATCGTGATATAAATGAGTAAA
1 ACCATAGCTGAAAGACACTATGACATCATGATATAAATAAGTAAA
* *
49965930 ATCATGGCTGAAAGAC
1 ACCATAGCTGAAAGAC
49965946 GCTTTAACAT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 48 0.94
46 3 0.06
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (45 bp):
ACCATAGCTGAAAGACACTATGACATCATGATATAAATAAGTAAA
Done.