Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 172 of 214
Found at i:50575501 original size:46 final size:46
Alignment explanation
Indices: 50575449--50575711 Score: 382
Period size: 46 Copynumber: 5.6 Consensus size: 46
50575439 TAAGTGTAGC
* **
50575449 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
50575495 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
50575541 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
50575587 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
50575633 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
50575685 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
50575712 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
46 157 0.79
48 1 0.01
50 1 0.01
52 40 0.20
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:50575663 original size:52 final size:52
Alignment explanation
Indices: 50575584--50575697 Score: 158
Period size: 52 Copynumber: 2.2 Consensus size: 52
50575574 TAGCCGAAGC
* **
50575584 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTT-TCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACT
* *
50575637 TATCACTTTCCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTT-CACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACT
50575689 TATCACTTT
1 TATCACTTT
50575698 GTCACTTGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
52 44 0.80
53 11 0.20
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (52 bp):
TATCACTTTCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACT
Found at i:50583003 original size:18 final size:17
Alignment explanation
Indices: 50582977--50583010 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50582967 CCCAAGACAA
*
50582977 TTTTTAAAAATGGGTTT
1 TTTTTAAAAAGGGGTTT
50582994 TTTTTAAAAAAGGGGTT
1 TTTTT-AAAAAGGGGTT
50583011 CGTATATTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (17 bp):
TTTTTAAAAAGGGGTTT
Found at i:50584229 original size:15 final size:14
Alignment explanation
Indices: 50584209--50584242 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
50584199 AAAAAGGTAC
*
50584209 AAAAAATAATAATA
1 AAAAAATAAAAATA
50584223 GAAAAAATAAAAATA
1 -AAAAAATAAAAATA
50584238 AAAAA
1 AAAAA
50584243 CTACCTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (14 bp):
AAAAAATAAAAATA
Found at i:50592135 original size:46 final size:46
Alignment explanation
Indices: 50592060--50592190 Score: 165
Period size: 46 Copynumber: 2.8 Consensus size: 46
50592050 TCCTTCTCAC
* *
50592060 ATACTACACTCTTTCTCGCGTGTTCTTAGGTATTAAAAAACTTAAA
1 ATACTACACTCTTTCTCACATGTTCTTAGGTATTAAAAAACTTAAA
*
50592106 ATACTAC-CTTCTTTCTCACATGTTTTTAGGTATTAAAAAACTTAAA
1 ATACTACAC-TCTTTCTCACATGTTCTTAGGTATTAAAAAACTTAAA
* * * * **
50592152 ATACCATACTCTTTCTCACGTATTCTTAAATATTAAAAA
1 ATACTACACTCTTTCTCACATGTTCTTAGGTATTAAAAA
50592191 TACCATACTC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 1 0.01
46 71 0.97
47 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (46 bp):
ATACTACACTCTTTCTCACATGTTCTTAGGTATTAAAAAACTTAAA
Found at i:50592192 original size:38 final size:38
Alignment explanation
Indices: 50592149--50592255 Score: 137
Period size: 38 Copynumber: 3.1 Consensus size: 38
50592139 TAAAAAACTT
50592149 AAAATACCATACTCTTTCTCACGTATTCTTAAATATTA
1 AAAATACCATACTCTTTCTCACGTATTCTTAAATATTA
50592187 AAAATACCATACTCTTTCTCACG----------TATT-
1 AAAATACCATACTCTTTCTCACGTATTCTTAAATATTA
50592214 AAAATACCATACTCTTTCTCACGTATTCTTAAATATTA
1 AAAATACCATACTCTTTCTCACGTATTCTTAAATATTA
50592252 AAAA
1 AAAA
50592256 AACTTAAAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 22
0.73 0.00 0.28
Matches are distributed among these distances:
27 23 0.40
28 4 0.07
37 4 0.07
38 27 0.47
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.37
Consensus pattern (38 bp):
AAAATACCATACTCTTTCTCACGTATTCTTAAATATTA
Found at i:50592225 original size:27 final size:28
Alignment explanation
Indices: 50592182--50592240 Score: 111
Period size: 27 Copynumber: 2.1 Consensus size: 28
50592172 TATTCTTAAA
50592182 TATTAAAAATACCATACTCTTTCTCACG
1 TATTAAAAATACCATACTCTTTCTCACG
50592210 TATT-AAAATACCATACTCTTTCTCACG
1 TATTAAAAATACCATACTCTTTCTCACG
50592237 TATT
1 TATT
50592241 CTTAAATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (28 bp):
TATTAAAAATACCATACTCTTTCTCACG
Found at i:50592612 original size:22 final size:22
Alignment explanation
Indices: 50592582--50592624 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
50592572 ACACGAAAAC
* *
50592582 AGGCTTTTAGTGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
50592604 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
50592625 AGCGCCGCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:50592757 original size:43 final size:43
Alignment explanation
Indices: 50592696--50592941 Score: 314
Period size: 43 Copynumber: 5.7 Consensus size: 43
50592686 GCGTCGCTAA
* *
50592696 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
*
50592739 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGAAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
* *
50592782 CTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
* * *
50592825 CTTTAGCGGCACTTTT-ACACAAACGCCGCTATAGATCAAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
*** * * *
50592867 CTTTAGCGGCGCTTTTTTTATAAATGCCGCTATAGATCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
* * * **
50592910 TTTTAGCGACGTTTTTTTCACAAACGCCGCTA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTA
50592942 AAAGTGCCAT
Statistics
Matches: 181, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
42 39 0.22
43 142 0.78
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
Found at i:50592868 original size:128 final size:129
Alignment explanation
Indices: 50592696--50592941 Score: 334
Period size: 128 Copynumber: 1.9 Consensus size: 129
50592686 GCGTCGCTAA
* * *
50592696 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCACA
1 CTTTAGCGGCACTTTTCACACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACA
50592761 AACGCCGCTATAGATCA-GAACCTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGAC
66 AACGCCGCTATAGATCATG-ACCTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGAC
* * *** *
50592825 CTTTAGCGGCACTTTT-ACACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTTTATA
1 CTTTAGCGGCACTTTTCACACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACA
* * ** **
50592889 AATGCCGCTATAGATCATGACTTTTAGCGACGTTTTTTTCACAAACGCCGCTA
66 AACGCCGCTATAGATCATGACCTTTAGCGACACTTTTCCCACAAACGCCGCTA
50592942 AAAGTGCCAT
Statistics
Matches: 101, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
128 85 0.84
129 16 0.16
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (129 bp):
CTTTAGCGGCACTTTTCACACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACA
AACGCCGCTATAGATCATGACCTTTAGCGACACTTTTCCCACAAACGCCGCTATAGATCAGGAC
Found at i:50595872 original size:21 final size:21
Alignment explanation
Indices: 50595848--50595888 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
50595838 AACCCTAAAT
50595848 CCCTAACTCTTAACCCCTAAC
1 CCCTAACTCTTAACCCCTAAC
*
50595869 CCCTAACTCTTAATCCCTAA
1 CCCTAACTCTTAACCCCTAA
50595889 ACCTTAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.44, G:0.00, T:0.27
Consensus pattern (21 bp):
CCCTAACTCTTAACCCCTAAC
Found at i:50596125 original size:23 final size:24
Alignment explanation
Indices: 50596086--50596130 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
50596076 TATATGAAAT
*
50596086 TATTTAATATATAAATTAAAAAAA
1 TATTTAATAAATAAATTAAAAAAA
50596110 TATTTAA-AAATAAATTAAAAA
1 TATTTAATAAATAAATTAAAAA
50596131 TAATTAATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
TATTTAATAAATAAATTAAAAAAA
Found at i:50596127 original size:11 final size:11
Alignment explanation
Indices: 50596096--50596137 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
50596086 TATTTAATAT
50596096 ATAAATTAAAA
1 ATAAATTAAAA
50596107 A-AATATTTAAAA
1 ATAA-A-TTAAAA
50596119 ATAAATTAAAA
1 ATAAATTAAAA
50596130 AT-AATTAA
1 ATAAATTAA
50596138 TCTAAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 8 0.29
11 10 0.36
12 8 0.29
13 2 0.07
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
ATAAATTAAAA
Found at i:50596203 original size:22 final size:22
Alignment explanation
Indices: 50596168--50596230 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
50596158 TTGACCCATG
* **
50596168 AACTCATAAACCCTAAGTCCCT
1 AACTCATAACCCCTAAACCCCT
*
50596190 AACTCTTAACCCCTAAACCCCT
1 AACTCATAACCCCTAAACCCCT
50596212 AAC-CACTAACCCCTAAACC
1 AACTCA-TAACCCCTAAACC
50596231 TTAAATCTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 1 0.03
22 34 0.97
ACGTcount: A:0.37, C:0.43, G:0.02, T:0.19
Consensus pattern (22 bp):
AACTCATAACCCCTAAACCCCT
Found at i:50596279 original size:15 final size:15
Alignment explanation
Indices: 50596243--50596283 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
50596233 AAATCTCAAC
50596243 CCTTAAA-CCATAAT
1 CCTTAAATCCATAAT
*
50596257 CCCT-AATCCATAAT
1 CCTTAAATCCATAAT
50596271 CCTTAAATCCATA
1 CCTTAAATCCATA
50596284 CTCCATAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 2 0.09
14 13 0.57
15 8 0.35
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (15 bp):
CCTTAAATCCATAAT
Found at i:50596292 original size:15 final size:15
Alignment explanation
Indices: 50596246--50596292 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
50596236 TCTCAACCCT
*
50596246 TAAA-CCATAATCCC
1 TAAATCCATAATCCA
*
50596260 T-AATCCATAATCCT
1 TAAATCCATAATCCA
*
50596274 TAAATCCATACTCCA
1 TAAATCCATAATCCA
50596289 TAAA
1 TAAA
50596293 CCTTAAAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.39
15 15 0.54
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCA
Found at i:50596562 original size:41 final size:41
Alignment explanation
Indices: 50596517--50596630 Score: 169
Period size: 41 Copynumber: 2.8 Consensus size: 41
50596507 TAAAATGTTT
50596517 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAA-ACCCCTA-CCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGA-CCC-AGCCA
*
50596558 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAGGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAGCCA
**
50596599 TTAGCGGCGCTTTTTGAAAAACGCCGCTAAAG
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAG
50596631 CCACGAAATG
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
40 1 0.01
41 66 0.97
42 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (41 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAGCCA
Found at i:50605008 original size:17 final size:18
Alignment explanation
Indices: 50604983--50605016 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50604973 CCATTATATT
*
50604983 TTTTTAATTT-TTTTATA
1 TTTTCAATTTATTTTATA
50605000 TTTTCAATTTATTTTAT
1 TTTTCAATTTATTTTAT
50605017 TTTATTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTCAATTTATTTTATA
Found at i:50607669 original size:22 final size:23
Alignment explanation
Indices: 50607619--50607676 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
50607609 GCTTGTGAGA
50607619 AAGCGCCGCTAAAAAATAAGCTAG
1 AAGCGCCGCT-AAAAATAAGCTAG
* *
50607643 AAGCGCCGCTAAAAATATGC-AT
1 AAGCGCCGCTAAAAATAAGCTAG
*
50607665 TAGCGCCGCTAA
1 AAGCGCCGCTAA
50607677 TAAAAATCCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 12 0.39
23 9 0.29
24 10 0.32
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.16
Consensus pattern (23 bp):
AAGCGCCGCTAAAAATAAGCTAG
Found at i:50607814 original size:42 final size:44
Alignment explanation
Indices: 50607711--50607816 Score: 116
Period size: 41 Copynumber: 2.5 Consensus size: 44
50607701 GTAGCCTTCG
* *
50607711 GAGGGCTTTAGTGGCGTTTTT--GTATTAGCGCCGCTAATGCTTT
1 GAGGGTTTTAGTGGCGTTTTTAAGTATTA-CGCCGCTAATGCGTT
* * *
50607754 GA--CTTTTAGCGGCATTTTTAAGTATT-CGCCGCTAATG-GTT
1 GAGGGTTTTAGTGGCGTTTTTAAGTATTACGCCGCTAATGCGTT
50607794 GAGGGTTTTAGTGGCGTTTTTAA
1 GAGGGTTTTAGTGGCGTTTTTAA
50607817 TCAACCGCCG
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
40 4 0.08
41 24 0.47
42 16 0.31
43 7 0.14
ACGTcount: A:0.17, C:0.14, G:0.28, T:0.41
Consensus pattern (44 bp):
GAGGGTTTTAGTGGCGTTTTTAAGTATTACGCCGCTAATGCGTT
Found at i:50607974 original size:41 final size:40
Alignment explanation
Indices: 50607851--50607975 Score: 110
Period size: 41 Copynumber: 3.0 Consensus size: 40
50607841 TGAAGCACCA
* * *
50607851 CTAATATATGGTCTTTTAGCGGCGTTTTTATATAAGAGCCG
1 CTAATATATGGTCTTTTAGCGGCGTTTATGT-TAAGCGCCG
* * * * *
50607892 CTAA-AGTTAAGAT-TTTTGGCGGGGTTTTTATGATAAGCGCCG
1 CTAATA--TATGGTCTTTTAGCGGCG--TTTATGTTAAGCGCCG
50607934 CTAATATATGGTCTTTTAGCGGCGTTTATGTTGAAGCGCCG
1 CTAATATATGGTCTTTTAGCGGCGTTTATGTT-AAGCGCCG
50607975 C
1 C
50607976 AAAAAACATT
Statistics
Matches: 64, Mismatches: 13, Indels: 14
0.70 0.14 0.15
Matches are distributed among these distances:
40 8 0.12
41 26 0.41
42 25 0.39
43 5 0.08
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (40 bp):
CTAATATATGGTCTTTTAGCGGCGTTTATGTTAAGCGCCG
Found at i:50608893 original size:22 final size:20
Alignment explanation
Indices: 50608871--50608935 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 20
50608861 GATATAAGGT
*
50608871 TTAGGGGTTAGGGTTTAGTGG
1 TTAGGGTTTAGGGTTTAG-GG
* *
50608892 TTAGGAATTTAGGGGTTAGGGG
1 TTAGG-GTTTAGGGTTTA-GGG
50608914 TTAGGGATTTAGGGTTTAGGG
1 TTAGGG-TTTAGGGTTTAGGG
50608935 T
1 T
50608936 GTCAAGGGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
21 9 0.25
22 26 0.72
23 1 0.03
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.37
Consensus pattern (20 bp):
TTAGGGTTTAGGGTTTAGGG
Found at i:50608908 original size:15 final size:14
Alignment explanation
Indices: 50608870--50608934 Score: 58
Period size: 15 Copynumber: 4.5 Consensus size: 14
50608860 AGATATAAGG
*
50608870 TTTAGGGGTTAGGG
1 TTTAGGGGTTAGGA
*
50608884 TTTAGTGGTTAGGAA
1 TTTAGGGGTTAGG-A
*
50608899 TTTAGGGGTTAGGG
1 TTTAGGGGTTAGGA
* * *
50608913 GTTAGGGATTTAGGG
1 TTTAGGG-GTTAGGA
50608928 TTTAGGG
1 TTTAGGG
50608935 TGTCAAGGGT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
14 18 0.43
15 24 0.57
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.37
Consensus pattern (14 bp):
TTTAGGGGTTAGGA
Found at i:50608935 original size:7 final size:7
Alignment explanation
Indices: 50608868--50608935 Score: 66
Period size: 7 Copynumber: 9.4 Consensus size: 7
50608858 TGAGATATAA
50608868 GGTTTAG
1 GGTTTAG
*
50608875 GGGTTAG
1 GGTTTAG
50608882 GGTTTAG
1 GGTTTAG
50608889 TGG-TTAG
1 -GGTTTAG
*
50608896 GAATTTAG
1 G-GTTTAG
*
50608904 GGGTTAG
1 GGTTTAG
*
50608911 GGGTTAG
1 GGTTTAG
50608918 GGATTTAG
1 GG-TTTAG
50608926 GGTTTAG
1 GGTTTAG
50608933 GGT
1 GGT
50608936 GTCAAGGGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
6 1 0.02
7 37 0.73
8 13 0.25
ACGTcount: A:0.18, C:0.00, G:0.46, T:0.37
Consensus pattern (7 bp):
GGTTTAG
Found at i:50610248 original size:21 final size:23
Alignment explanation
Indices: 50610222--50610263 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
50610212 AATTCATGAA
50610222 TTTTTT-TTCCCTT-TTCTCTCT
1 TTTTTTCTTCCCTTCTTCTCTCT
50610243 TTTTTTCTTCCCTTCTTCTCT
1 TTTTTTCTTCCCTTCTTCTCT
50610264 TCTCCTTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 7 0.37
23 6 0.32
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTTTTCTTCCCTTCTTCTCTCT
Found at i:50610264 original size:21 final size:21
Alignment explanation
Indices: 50610222--50610264 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
50610212 AATTCATGAA
*
50610222 TTTTTTTTCCCTTTTCTCTCT
1 TTTTTTTTCCCTTCTCTCTCT
50610243 TTTTTTCTTCCCTTCT-TCTCT
1 TTTTTT-TTCCCTTCTCTCTCT
50610264 T
1 T
50610265 CTCCTTGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTTTTCCCTTCTCTCTCT
Found at i:50612217 original size:15 final size:14
Alignment explanation
Indices: 50612193--50612222 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
50612183 TATTCCATAT
50612193 ATAAAAATTTATAA
1 ATAAAAATTTATAA
50612207 ATAATAAATTTATAA
1 ATAA-AAATTTATAA
50612222 A
1 A
50612223 GTCGAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAAAAATTTATAA
Found at i:50622177 original size:23 final size:22
Alignment explanation
Indices: 50622111--50622201 Score: 76
Period size: 23 Copynumber: 4.0 Consensus size: 22
50622101 GAAATTAATA
*
50622111 ATATTATTATAAAATTGTAAAA-
1 ATATTTTTATAAAATT-TAAAAT
*
50622133 ATATTTTTAAAAAACGTTTAAAAT
1 ATATTTTTATAAAA--TTTAAAAT
*
50622157 ATTTTTTTATAAAATTATAAAAT
1 ATATTTTTATAAAATT-TAAAAT
** *
50622180 ATATAATTCTAAAATTCTAAAA
1 ATATTTTTATAAAATT-TAAAA
50622202 AGGTATTTAA
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
22 14 0.25
23 28 0.50
24 14 0.25
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (22 bp):
ATATTTTTATAAAATTTAAAAT
Found at i:50622324 original size:24 final size:25
Alignment explanation
Indices: 50622297--50622348 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
50622287 TTAAATTATA
*
50622297 TATTTT-AAAATTTTTATAAAAATT
1 TATTTTCAAAATTTTTATAAAAAAT
* *
50622321 TATTTTCAAACTTTTTTTAAAAAAT
1 TATTTTCAAAATTTTTATAAAAAAT
50622346 TAT
1 TAT
50622349 ATATTATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (25 bp):
TATTTTCAAAATTTTTATAAAAAAT
Found at i:50622496 original size:14 final size:14
Alignment explanation
Indices: 50622479--50622547 Score: 58
Period size: 14 Copynumber: 5.1 Consensus size: 14
50622469 AAAAGTATTT
50622479 TTTTAATATTTAAA
1 TTTTAATATTTAAA
50622493 TTTTAATATTATAAA
1 TTTTAATATT-TAAA
*
50622508 TTTCT-AT-TTTTAA
1 TTT-TAATATTTAAA
50622521 -TTTAA-ATTTAATA
1 TTTTAATATTTAA-A
*
50622534 TTTTTAT-TTTAAA
1 TTTTAATATTTAAA
50622547 T
1 T
50622548 AAACCTAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
11 1 0.02
12 7 0.16
13 6 0.13
14 21 0.47
15 9 0.20
16 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTTAATATTTAAA
Found at i:50622537 original size:20 final size:20
Alignment explanation
Indices: 50622480--50622547 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
50622470 AAAGTATTTT
*
50622480 TTTAATATTTAA-ATTTTAATA
1 TTTAA-ATTTAATATTTTTA-A
*
50622501 TTATAAATTT-CTATTTTTAA
1 TT-TAAATTTAATATTTTTAA
*
50622521 TTTAAATTTAATATTTTTAT
1 TTTAAATTTAATATTTTTAA
50622541 TTTAAAT
1 TTTAAAT
50622548 AAACCTAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 7 0.17
20 18 0.45
21 12 0.30
22 3 0.08
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTAAATTTAATATTTTTAA
Found at i:50623884 original size:7 final size:7
Alignment explanation
Indices: 50623851--50623883 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
50623841 CCGGTCCATC
50623851 GGCCTTA
1 GGCCTTA
50623858 GGCCTTA
1 GGCCTTA
50623865 GGCCTTA
1 GGCCTTA
*
50623872 GGCCTCA
1 GGCCTTA
50623879 GGCCT
1 GGCCT
50623884 CTTAGCTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.12, C:0.33, G:0.30, T:0.24
Consensus pattern (7 bp):
GGCCTTA
Found at i:50626987 original size:23 final size:25
Alignment explanation
Indices: 50626933--50626987 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
50626923 AATAAAATAT
50626933 TTTAAATTTTATATAAAATATATTA
1 TTTAAATTTTATATAAAATATATTA
* *
50626958 ATCAAATTTTAT-T-AAATAT-TTGA
1 TTTAAATTTTATATAAAATATATT-A
50626981 TTTAAAT
1 TTTAAAT
50626988 CTAACTAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.08
23 12 0.48
24 1 0.04
25 10 0.40
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
TTTAAATTTTATATAAAATATATTA
Found at i:50628275 original size:20 final size:18
Alignment explanation
Indices: 50628252--50628290 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
50628242 ATAATATAAC
50628252 ATAAATTAAAACTATATTTT
1 ATAAATTAAAA-TAT-TTTT
*
50628272 ATAAATTTAAATATTTTT
1 ATAAATTAAAATATTTTT
50628290 A
1 A
50628291 AATTATATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 3 0.17
20 10 0.56
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (18 bp):
ATAAATTAAAATATTTTT
Found at i:50641011 original size:50 final size:49
Alignment explanation
Indices: 50640926--50641020 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 49
50640916 CCCCTTCCTT
50640926 TTTAACTCAATGTCATCATTCCCATGAAGACGCGGGCATCAATCAGTCA
1 TTTAACTCAATGTCATCATTCCCATGAAGACGCGGGCATCAATCAGTCA
* * * *
50640975 TTTAATTCAATGTCATCCGTTCCCATGAAGATGCGGGCATCGATCA
1 TTTAACTCAATGTCAT-CATTCCCATGAAGACGCGGGCATCAATCA
50641021 TGACTGAACT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 15 0.37
50 26 0.63
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TTTAACTCAATGTCATCATTCCCATGAAGACGCGGGCATCAATCAGTCA
Found at i:50655688 original size:2 final size:2
Alignment explanation
Indices: 50655681--50655716 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
50655671 TACATACATA
* *
50655681 TG TG TG TG TG CG TG TG TG TG TG TG TG CG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
50655717 AAATTTTACA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.06, G:0.50, T:0.44
Consensus pattern (2 bp):
TG
Found at i:50655702 original size:16 final size:16
Alignment explanation
Indices: 50655681--50655716 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
50655671 TACATACATA
50655681 TGTGTGTGTGCGTGTG
1 TGTGTGTGTGCGTGTG
50655697 TGTGTGTGTGCGTGTG
1 TGTGTGTGTGCGTGTG
50655713 TGTG
1 TGTG
50655717 AAATTTTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.00, C:0.06, G:0.50, T:0.44
Consensus pattern (16 bp):
TGTGTGTGTGCGTGTG
Found at i:50660216 original size:43 final size:41
Alignment explanation
Indices: 50660158--50660260 Score: 143
Period size: 43 Copynumber: 2.4 Consensus size: 41
50660148 AATATGTCAT
50660158 AATAATATCCTATAATATCATATTAGAAATCAAATTGCTAATA
1 AATAATATCC-ATAATATCATATTAGAAATCAAATTGCTAA-A
* *
50660201 AATAATATCTCATAATATCTTATTAGGAATCAAATTGCTAAA
1 AATAATATC-CATAATATCATATTAGAAATCAAATTGCTAAA
50660243 AGATAATATCCCATAATA
1 A-ATAATAT-CCATAATA
50660261 ATATCCTAAC
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
42 2 0.04
43 51 0.93
44 2 0.04
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.34
Consensus pattern (41 bp):
AATAATATCCATAATATCATATTAGAAATCAAATTGCTAAA
Found at i:50664556 original size:53 final size:53
Alignment explanation
Indices: 50664490--50664595 Score: 160
Period size: 53 Copynumber: 2.0 Consensus size: 53
50664480 AGTACTAATA
* *
50664490 AAAACATATTTAAACGATTTTGTTCAAGACCT-ACAACATTATGTCTTACAAAT
1 AAAACATAATTAAACAATTTTGTTCAAGA-CTGACAACATTATGTCTTACAAAT
* *
50664543 AAAACATAATTAAATAATTTTGTTCAAGACTGACAACATTGTGTCTTACAAAT
1 AAAACATAATTAAACAATTTTGTTCAAGACTGACAACATTATGTCTTACAAAT
50664596 TGAAAAATAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
52 2 0.04
53 46 0.96
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.34
Consensus pattern (53 bp):
AAAACATAATTAAACAATTTTGTTCAAGACTGACAACATTATGTCTTACAAAT
Found at i:50669283 original size:59 final size:61
Alignment explanation
Indices: 50669214--50669330 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 61
50669204 ATAACTTTAA
* **
50669214 TATTAAATTAATATAATACTTA-T-CAAGATAAATATTATGTTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTACTACAAGATAAATATTAAATTAAATTTAATATTAAATCT
* * *
50669273 TATTAAATTAATAGAATATTTATCTACAAGATAAATATTAAATTAATTTTGATATTAA
1 TATTAAATTAATAGAATACTTA-CTACAAGATAAATATTAAATTAAATTTAATATTAA
50669331 GATAATCACT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 20 0.41
61 1 0.02
62 28 0.57
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (61 bp):
TATTAAATTAATAGAATACTTACTACAAGATAAATATTAAATTAAATTTAATATTAAATCT
Found at i:50673208 original size:18 final size:18
Alignment explanation
Indices: 50673170--50673261 Score: 62
Period size: 18 Copynumber: 4.9 Consensus size: 18
50673160 GTTGATTGGA
**
50673170 AAAAAATATTAAAAACAAT
1 AAAAAAT-TTAAAAATTAT
50673189 AAAAAATTTAAAAATTAT
1 AAAAAATTTAAAAATTAT
* *
50673207 --AACATTGTAACAACTTATT
1 AAAAAATT-TAA-AAATTA-T
*
50673226 AAAAAATTGCAAAAATTAT
1 AAAAAATT-TAAAAATTAT
* *
50673245 AAAAAATGTAAATATTA
1 AAAAAATTTAAAAATTA
50673262 ACAAATTATT
Statistics
Matches: 58, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
16 5 0.09
17 3 0.05
18 21 0.36
19 16 0.28
20 5 0.09
21 8 0.14
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.29
Consensus pattern (18 bp):
AAAAAATTTAAAAATTAT
Found at i:50673852 original size:31 final size:31
Alignment explanation
Indices: 50673805--50673872 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
50673795 TGTTAATCTA
* *
50673805 TGAACTTGGCAATTGTT-TCTCTATTAGGGCT
1 TGAACTTGACAATTGTTCT-TATATTAGGGCT
*
50673836 TGAATTTGACAATTGTTCTTATATTAGGGCT
1 TGAACTTGACAATTGTTCTTATATTAGGGCT
*
50673867 TCAACT
1 TGAACT
50673873 CTAGGGTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.43
Consensus pattern (31 bp):
TGAACTTGACAATTGTTCTTATATTAGGGCT
Found at i:50674750 original size:17 final size:18
Alignment explanation
Indices: 50674728--50674762 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
50674718 GATATATAAT
*
50674728 TATATTTTAAAA-TAAAA
1 TATATTCTAAAATTAAAA
50674745 TATATTCTAAAATTAAAA
1 TATATTCTAAAATTAAAA
50674763 AGGAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (18 bp):
TATATTCTAAAATTAAAA
Found at i:50676837 original size:21 final size:21
Alignment explanation
Indices: 50676811--50676889 Score: 108
Period size: 21 Copynumber: 3.9 Consensus size: 21
50676801 GGTGGATCAA
*
50676811 CTCTTACGAGCTTCTATTCAG
1 CTCTTACGAGCTTCTGTTCAG
* *
50676832 CTCTTATGAGCTTCTGTTCAA
1 CTCTTACGAGCTTCTGTTCAG
*
50676853 CTCTTATGAGCTTCTGTTCAG
1 CTCTTACGAGCTTCTGTTCAG
50676874 CT-TT-CGAGCTTCTGTT
1 CTCTTACGAGCTTCTGTT
50676890 GGTGTATTCG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
19 11 0.21
20 2 0.04
21 40 0.75
ACGTcount: A:0.15, C:0.25, G:0.16, T:0.43
Consensus pattern (21 bp):
CTCTTACGAGCTTCTGTTCAG
Found at i:50676854 original size:42 final size:40
Alignment explanation
Indices: 50676807--50676889 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 40
50676797 ATTGGGTGGA
*
50676807 TCAACTCTTACGAGCTTCTATTCAGCTCTTATGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTATTCAGCT-TT-CGAGCTTCTGT
* *
50676849 TCAACTCTTATGAGCTTCTGTTCAGCTTTCGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTATTCAGCTTTCGAGCTTCTGT
50676889 T
1 T
50676890 GGTGTATTCG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 11 0.29
41 2 0.05
42 25 0.66
ACGTcount: A:0.17, C:0.25, G:0.16, T:0.42
Consensus pattern (40 bp):
TCAACTCTTACGAGCTTCTATTCAGCTTTCGAGCTTCTGT
Found at i:50679387 original size:30 final size:29
Alignment explanation
Indices: 50679354--50679409 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
50679344 CCCTTTTGTT
*
50679354 TTTTTA-TTTCGATTTCGCCCCCTTTTTGG
1 TTTTTACTTT-GATTTAGCCCCCTTTTTGG
*
50679383 TTTTTACTTTGATTTAGTCCCCTTTTT
1 TTTTTACTTTGATTTAGCCCCCTTTTT
50679410 AGTATTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.09, C:0.21, G:0.11, T:0.59
Consensus pattern (29 bp):
TTTTTACTTTGATTTAGCCCCCTTTTTGG
Found at i:50679460 original size:3 final size:3
Alignment explanation
Indices: 50679431--50679510 Score: 55
Period size: 3 Copynumber: 27.7 Consensus size: 3
50679421 TATTTTCTTC
* * *
50679431 ATT ATT -TT AAT A-T ATT ATC ATTT ATT ATT ATT ATT ACT ATT -TCT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT AT-T
*
50679475 ATT ATT ATT A-T ATT -TT ATT ATTT ATC A-T ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT AT
50679511 ACGATAGTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
2 10 0.16
3 45 0.74
4 6 0.10
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:50679479 original size:18 final size:16
Alignment explanation
Indices: 50679433--50679510 Score: 68
Period size: 18 Copynumber: 4.5 Consensus size: 16
50679423 TTTTCTTCAT
*
50679433 TATTTTAATA-TATTA
1 TATTTTATTATTATTA
50679448 TCATTTATTATTATTATTA
1 T-A-TT-TTATTATTATTA
50679467 CTATTTCTATTATTATTA
1 -TATTT-TATTATTATTA
*
50679485 TATTTTATTATTTATCA
1 TATTTTATTA-TTATTA
50679502 TATTATTAT
1 TATT-TTAT
50679511 ACGATAGTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
15 1 0.02
16 6 0.11
17 17 0.32
18 22 0.42
19 6 0.11
20 1 0.02
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTTATTATTATTA
Found at i:50683030 original size:18 final size:20
Alignment explanation
Indices: 50682991--50683031 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
50682981 GTTGTTACTA
50682991 TTTTGTTGTCATTGTATAAT
1 TTTTGTTGTCATTGTATAAT
*
50683011 TTTTGTT-TTATTGT-TAAT
1 TTTTGTTGTCATTGTATAAT
50683029 TTT
1 TTT
50683032 GTTACTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 6 0.30
20 7 0.35
ACGTcount: A:0.17, C:0.02, G:0.12, T:0.68
Consensus pattern (20 bp):
TTTTGTTGTCATTGTATAAT
Found at i:50683031 original size:17 final size:19
Alignment explanation
Indices: 50682990--50683034 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
50682980 TGTTGTTACT
50682990 ATTTTGTTGTCATTGTATA
1 ATTTTGTTGTCATTGTATA
*
50683009 ATTTTTGTT-TTATTGT-TA
1 A-TTTTGTTGTCATTGTATA
50683027 ATTTTGTT
1 ATTTTGTT
50683035 ACTATTTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.29
18 3 0.12
19 7 0.29
20 7 0.29
ACGTcount: A:0.18, C:0.02, G:0.13, T:0.67
Consensus pattern (19 bp):
ATTTTGTTGTCATTGTATA
Found at i:50683040 original size:18 final size:19
Alignment explanation
Indices: 50682991--50683040 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
50682981 GTTGTTACTA
*
50682991 TTTTGTTGTCATTGTATAAT
1 TTTTGTTCT-ATTGTATAAT
*
50683011 TTTTGTTTTATTGT-TAA-
1 TTTTGTTCTATTGTATAAT
50683028 TTTTGTTACTATT
1 TTTTGTT-CTATT
50683041 TTAGAGGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 5 0.19
20 8 0.30
ACGTcount: A:0.18, C:0.04, G:0.12, T:0.66
Consensus pattern (19 bp):
TTTTGTTCTATTGTATAAT
Found at i:50684291 original size:23 final size:21
Alignment explanation
Indices: 50684236--50684294 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
50684226 AATATGTATG
*
50684236 TTGATTATTATTTATTAAATTT
1 TTGATTA-TATTTATTAAAGTT
* *
50684258 TTTAATA-ATTTCATTATAAGTT
1 TTGATTATATTT-ATTA-AAGTT
50684280 TTGATTATATTTATT
1 TTGATTATATTTATT
50684295 TTTAATAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
20 4 0.14
21 4 0.14
22 17 0.59
23 4 0.14
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (21 bp):
TTGATTATATTTATTAAAGTT
Found at i:50685836 original size:21 final size:21
Alignment explanation
Indices: 50685810--50685860 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
50685800 AGCGGTGGCG
*
50685810 GTGAGATTAGTTACTGTAGCA
1 GTGAGATTAGATACTGTAGCA
* *
50685831 GTGAGATTGGATACTGTAGCG
1 GTGAGATTAGATACTGTAGCA
50685852 GTGAGATTA
1 GTGAGATTA
50685861 AAAACAATGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.33, T:0.31
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCA
Found at i:50691273 original size:18 final size:20
Alignment explanation
Indices: 50691235--50691274 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
50691225 TACAAAACAA
50691235 TTCAATTTCATATCGAATAT
1 TTCAATTTCATATCGAATAT
*
50691255 TTCAATTTTAT-TC-AATAT
1 TTCAATTTCATATCGAATAT
50691273 TT
1 TT
50691275 TCCTAAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 2 0.11
20 10 0.53
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.53
Consensus pattern (20 bp):
TTCAATTTCATATCGAATAT
Found at i:50701022 original size:132 final size:132
Alignment explanation
Indices: 50700780--50701040 Score: 371
Period size: 132 Copynumber: 2.0 Consensus size: 132
50700770 TCAGACATGA
* * * * *
50700780 ATACAATATCAAACGCTTGCAGTGACAAACATCTTGTTTGTCATAAGTAATATCTACTTAGACCT
1 ATACAATATCAAACACATGCAGTGACAAACATCTTATTTATCATAAGTAATATCTACTCAGACCT
* *
50700845 AGACACATGCATAATTTCTCAAAACATCTACAGTGAAACCACCAGAGTTGTAAAATACCCTTAAA
66 AGACACATACATAATTTCTCAAAACACCTACAGTGAAACCACCAGAGTTGTAAAATACCCTTAAA
50700910 CT
131 CT
* * * *
50700912 ATACAATATCAAACACATGCTGTGACCAACATTTTATTTATCATAAGTAATATCTACTCAGAGCT
1 ATACAATATCAAACACATGCAGTGACAAACATCTTATTTATCATAAGTAATATCTACTCAGACCT
* * **
50700977 AGACACATACAT-ATTTCCTCAAAATACCTACAGTGAAACCTCCAGAGTTGTATGATACCCTTAA
66 AGACACATACATAATTT-CTCAAAACACCTACAGTGAAACCACCAGAGTTGTAAAATACCCTTAA
50701041 CTCTTGTAAT
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
131 4 0.04
132 109 0.96
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (132 bp):
ATACAATATCAAACACATGCAGTGACAAACATCTTATTTATCATAAGTAATATCTACTCAGACCT
AGACACATACATAATTTCTCAAAACACCTACAGTGAAACCACCAGAGTTGTAAAATACCCTTAAA
CT
Found at i:50705270 original size:19 final size:19
Alignment explanation
Indices: 50705248--50705287 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
50705238 CTTTCCTTTC
*
50705248 CTCTCGTCTCT-TTTTTTTT
1 CTCTC-TCTCTCTCTTTTTT
50705267 CTCTCTCTCTCTCTTTTTT
1 CTCTCTCTCTCTCTTTTTT
50705286 CT
1 CT
50705288 TCCTCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.00, C:0.33, G:0.03, T:0.65
Consensus pattern (19 bp):
CTCTCTCTCTCTCTTTTTT
Found at i:50705277 original size:20 final size:21
Alignment explanation
Indices: 50705244--50705292 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
50705234 TTTTCTTTCC
50705244 TTTCCTCTCGTCTCT-TTTTT
1 TTTCCTCTCGTCTCTCTTTTT
50705264 TTTCTCTCTC-TCTCTCTTTTT
1 TTTC-CTCTCGTCTCTCTTTTT
50705285 TCTTCCTC
1 T-TTCCTC
50705293 CCTCAACCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.35
21 14 0.54
22 3 0.12
ACGTcount: A:0.00, C:0.35, G:0.02, T:0.63
Consensus pattern (21 bp):
TTTCCTCTCGTCTCTCTTTTT
Found at i:50710534 original size:62 final size:62
Alignment explanation
Indices: 50710468--50710626 Score: 176
Period size: 62 Copynumber: 2.6 Consensus size: 62
50710458 AAGCATAAAT
* * *
50710468 AGTGAGTTACACGGCCTGGACACACACCCGTGTCCTTGATCATGTGGTTTTATACCACAAAA
1 AGTGAGTTACACGGCCTGGACACACGCTCGTGTCCTTGATCATGTGGTCTTATACCACAAAA
* * * * * * * *
50710530 AGTGAGTTACCCGGCCTAGG-CAAATGCTCGTGTCCTTGGTCGTGTGGTCTTATTCCACACAC
1 AGTGAGTTACACGGCCT-GGACACACGCTCGTGTCCTTGATCATGTGGTCTTATACCACAAAA
* * *
50710592 AGTAAGTTACACAGCCCGGACACACGCTCGTGTCC
1 AGTGAGTTACACGGCCTGGACACACGCTCGTGTCC
50710627 ATTGCCTGTG
Statistics
Matches: 78, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
61 2 0.03
62 74 0.95
63 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (62 bp):
AGTGAGTTACACGGCCTGGACACACGCTCGTGTCCTTGATCATGTGGTCTTATACCACAAAA
Found at i:50727393 original size:25 final size:24
Alignment explanation
Indices: 50727365--50727412 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
50727355 ATCCGGGCAA
50727365 TATAAC-AGGAAGCTCACAAAGAGCC
1 TATAACGA-GAAGCTC-CAAAGAGCC
*
50727390 TATAACGAGTAGCTCCAAAGAGC
1 TATAACGAGAAGCTCCAAAGAGC
50727413 AATTAACAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 12 0.57
26 1 0.05
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (24 bp):
TATAACGAGAAGCTCCAAAGAGCC
Found at i:50727419 original size:24 final size:24
Alignment explanation
Indices: 50727361--50727442 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 24
50727351 GCTTATCCGG
* *
50727361 GCAATATAACAGGAAGCTCACAAAGA
1 GCAAT-TAACAAGTAGCTC-CAAAGA
* *
50727387 GC-CTATAACGAGTAGCTCCAAAGA
1 GCAAT-TAACAAGTAGCTCCAAAGA
* **
50727411 GCAATTAACAAGTAGTTCTGAAGA
1 GCAATTAACAAGTAGCTCCAAAGA
50727435 GCAATTAA
1 GCAATTAA
50727443 TGGGAAGCAC
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 31 0.67
25 13 0.28
26 2 0.04
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (24 bp):
GCAATTAACAAGTAGCTCCAAAGA
Found at i:50728345 original size:25 final size:24
Alignment explanation
Indices: 50728308--50728354 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
50728298 CTCTCAAGCA
*
50728308 CTATAACGGGTAGCTCACAAAGAAC
1 CTATAACGAGTAGCTC-CAAAGAAC
*
50728333 CTATGACGAGTAGCTCCAAAGA
1 CTATAACGAGTAGCTCCAAAGA
50728355 GCAATTAACG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (24 bp):
CTATAACGAGTAGCTCCAAAGAAC
Found at i:50728365 original size:24 final size:24
Alignment explanation
Indices: 50728338--50728388 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
50728328 AGAACCTATG
*
50728338 ACGAGTAGCTCCAAAGAGCAATTA
1 ACGAGTAGCACCAAAGAGCAATTA
*
50728362 ACGAGTAGCACCGAAGAGCAATTA
1 ACGAGTAGCACCAAAGAGCAATTA
50728386 ACG
1 ACG
50728389 GGAAGCACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.22, G:0.24, T:0.14
Consensus pattern (24 bp):
ACGAGTAGCACCAAAGAGCAATTA
Found at i:50728395 original size:24 final size:24
Alignment explanation
Indices: 50728351--50728396 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
50728341 AGTAGCTCCA
*
50728351 AAGAGCAATTAACGAGTAGCACCG
1 AAGAGCAATTAACGAGAAGCACCG
*
50728375 AAGAGCAATTAACGGGAAGCAC
1 AAGAGCAATTAACGAGAAGCAC
50728397 TGGATAGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.20, G:0.26, T:0.11
Consensus pattern (24 bp):
AAGAGCAATTAACGAGAAGCACCG
Found at i:50728460 original size:25 final size:25
Alignment explanation
Indices: 50728432--50728479 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
50728422 AAGCGAGCAC
*
50728432 TAATGGGAAGCTCACAAAGAGCCTT
1 TAATCGGAAGCTCACAAAGAGCCTT
*
50728457 TAATCGGAAGCTCACGAAGAGCC
1 TAATCGGAAGCTCACAAAGAGCC
50728480 ATATAACGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (25 bp):
TAATCGGAAGCTCACAAAGAGCCTT
Found at i:50729981 original size:124 final size:125
Alignment explanation
Indices: 50729867--50730108 Score: 346
Period size: 124 Copynumber: 1.9 Consensus size: 125
50729857 CGCTTCTACT
* * *
50729867 AGGATGCTATTTAAGAAGAAATTGTCAAATAGTGGCCTCGTGGACACGATTTCGCTACA-TTGGT
1 AGGATGCTATATAAGAAGAAATTGTCAAATAGCGCCCTCGTGGACACGATTTCGCTACAGTTGGT
* *
50729931 CATGT-GAGAAATAA-TTTTTTTTGACGCTTTCTGAGGAAATAGTATAAAATCGCTGATAAC
66 CATGTAG-GAAATAATTTTTTTTTGACG-TTTCTGAGCAAACAGTATAAAATCGCTGATAAC
* * * *
50729991 AGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGT
1 AGGATGCTATATAAGAAGAAATTGTCAAATAGCGCCCTCGTGGACACGATTTCGCTACAGTTGGT
* *
50730056 CATGTAGGAAATAATTTTTTTTTGACGTTTCTGAGCAAACAGTGTCAAATCGC
66 CATGTAGGAAATAATTTTTTTTTGACGTTTCTGAGCAAACAGTATAAAATCGC
50730109 GCCCTCGTGG
Statistics
Matches: 104, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
124 52 0.50
125 39 0.38
126 13 0.12
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (125 bp):
AGGATGCTATATAAGAAGAAATTGTCAAATAGCGCCCTCGTGGACACGATTTCGCTACAGTTGGT
CATGTAGGAAATAATTTTTTTTTGACGTTTCTGAGCAAACAGTATAAAATCGCTGATAAC
Found at i:50733332 original size:33 final size:31
Alignment explanation
Indices: 50733295--50734793 Score: 1334
Period size: 33 Copynumber: 49.1 Consensus size: 31
50733285 AATTAAATAG
50733295 GGTTAGGGTTTTTAATTTAGTTAAATTAGGTTA
1 GGTTAGGGTTTTTAA-TTA-TTAAATTAGGTTA
50733328 GGTTAGGGTTTTTAATTTAATTAAA-TAGGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
* *
50733360 GGGTTTGAGTTTTT-A--ATTAAATTAGGTTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50733389 GGTTAGGGTTTTT-A--ATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50733417 GGGTTAGGGTTTTTAATTTAGTTAAATTAGGTTA
1 -GGTTAGGGTTTTTAA-TTA-TTAAATTAGGTTA
*
50733451 GGTTAGGGTTTTTAATTTATTTAATTAGGTTA
1 GGTTAGGGTTTTTAA-TTATTAAATTAGGTTA
* **
50733483 GGGTTTGGGTTTTTAATTAAATTAGGTTAGGGTTA
1 -GGTTAGGGTTTTTAATT--ATTAAATTA-GGTTA
*
50733518 GGGTTAGGGTTTTTAATTATTTAAATTAAGTTA
1 -GGTTAGGGTTTTTAATTA-TTAAATTAGGTTA
50733551 GGTTAGGGTTTTTAATTTAATT-AATTAGGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
*
50733583 GGGTTTGGGTTTTT-A--ATTAAATTAGGTTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50733612 GGTTAGGGTTTTT-A--ATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
**
50733640 GGTTAGGG-TTTTAATTAAATTAGGTTAGGGTTA
1 GGTTAGGGTTTTTAATT--ATTAAATTA-GGTTA
50733673 GAGTTAGGGTTTTTAATTTAGTTAAATTAGGTTA
1 G-GTTAGGGTTTTTAA-TTA-TTAAATTAGGTTA
50733707 GGTTAGGGTTTTTAATTTATTTAAA-TAGGTTA
1 GGTTAGGGTTTTTAA-TTA-TTAAATTAGGTTA
*
50733739 GGGTTTGGGTTTTT-A--ATTAAATTAGGTTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
**
50733768 GGTTAGGGTTTTTAATTAAATTAGGTTAGGTTA
1 GGTTAGGGTTTTTAATT--ATTAAATTAGGTTA
50733801 GGTTAGGGTTTTTAATTTAATT-AATTAGGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
*
50733833 GGGTTTGGGTTTTT-A--ATT-AA--A--TTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50733857 GGTTAGGGTTTTT-A--ATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
*
50733885 GGGTTAGGGTTTTTAATTATTTAAATTAAGTTA
1 -GGTTAGGGTTTTTAATTA-TTAAATTAGGTTA
50733918 GGTTAGGGTTTTTAATTTAATT-AATTAGGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
* *
50733950 GGGTTTGGGTTTTT-A--ATTAAATTAGATTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50733979 GGTTAGGGTTTTT-A--ATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50734007 GGTTAGGGTTTTT-A--ATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50734035 GGGTTAGGGTTTTTAATTTAGTTAAATTAGGTTA
1 -GGTTAGGGTTTTTAA-TTA-TTAAATTAGGTTA
50734069 GGTTAGGGTTTTTAATTTATTTAAA-TAGGTTA
1 GGTTAGGGTTTTTAA-TTA-TTAAATTAGGTTA
*
50734101 GGGTTTGGGTTTTT-A--ATTAAATTAGGTTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
*
50734130 GGTTAGGGTTTTTAATTTAATTAAATTAAGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
*
50734163 AGTTAGGGTTTTTAATTTAATT-AATTAGGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
*
50734195 GGGTTTGGGTTTTT-A--ATT-AA--A--TTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50734219 GGTTAGGGTTTTT-A--ATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
*
50734247 GGGTTAGGGTTTTTAATTATTTAAATTAAGTTA
1 -GGTTAGGGTTTTTAATTA-TTAAATTAGGTTA
*
50734280 AGTTAGGGTTTTTAATTTAATT-AATTAGGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
*
50734312 GGGTTTGGGTTTTT-A--ATTAAATTAGGTTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50734341 GG-T----TTTTT-A--ATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
*
50734364 GGGTTTAGGGTTTTTAATTATTTAAATTAAGTTA
1 -GG-TTAGGGTTTTTAATTA-TTAAATTAGGTTA
50734398 GGTTAGGGTTTTTAATTTAATT-AATTAGGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
50734430 GGTTAGGGTTTTTAATTTATTTAAA-TAGGTTA
1 GGTTAGGGTTTTTAA-TTA-TTAAATTAGGTTA
*
50734462 GGGTTTGGGTTTTT-A--ATTAAATTAGGTTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
*
50734491 GGTTAGGGTTTTTAATTTAATTAAATTAAGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
*** * **
50734524 GGTTAGGG-TTTGGGTT-TTTAATTAAATTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50734553 GGTTAGGGTTTTT-A--ATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
*
50734581 GGGTTAGGGTTTTTAATTATTTAAATTAAGTTA
1 -GGTTAGGGTTTTTAATTA-TTAAATTAGGTTA
50734614 GGTTAGGGTTTTTAATTTAATT-AATTAGGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
*
50734646 GGGTTTGGGTTTTT-A--ATT-AA--A--TTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50734670 GGTTAGGGTTTTT-A--ATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATTATTAAATTAGGTTA
*
50734698 GGGTTAGGGTTTTTAATTATTTAAATTAAGTTA
1 -GGTTAGGGTTTTTAATTA-TTAAATTAGGTTA
50734731 GGTTAGGGTTTTTAATTTAATT-AATTAGGTTA
1 GGTTAGGGTTTTTAA-TT-ATTAAATTAGGTTA
* *
50734763 GGGTTTGAGTTTTT-A--ATTAAATTAGGTTA
1 -GGTTAGGGTTTTTAATTATTAAATTAGGTTA
50734792 GG
1 GG
50734794 GTTTTTAATT
Statistics
Matches: 1269, Mismatches: 72, Indels: 255
0.80 0.05 0.16
Matches are distributed among these distances:
23 68 0.05
24 17 0.01
26 7 0.01
27 5 0.00
28 223 0.18
29 170 0.13
30 14 0.01
31 4 0.00
32 245 0.19
33 407 0.32
34 73 0.06
35 34 0.03
36 2 0.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (31 bp):
GGTTAGGGTTTTTAATTATTAAATTAGGTTA
Found at i:50733381 original size:61 final size:61
Alignment explanation
Indices: 50733282--50734793 Score: 1316
Period size: 61 Copynumber: 24.8 Consensus size: 61
50733272 AATTAGGGTT
*
50733282 TTTAATTAAATAGGGTTAGGGTTT---TTAATTTAGTTAAATTAGGTTAGGTTAGGGTTTTTAA
1 TTTAATTAAATA-GGTTAGGGTTTGGGTT--TTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
*
50733343 TTTAATTAAATAGGTTAGGGTTTGAGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* *
50733404 -TT-A--AATTAGGTTAGGGTTAGGGTTTTTAATTTAGTTAAATTAGGTTAGGTTAGGGTTTTTA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTT-A---A-TTAAATTAGGTTAGGTTAGGGTTTTTA
50733465 A
61 A
* *
50733466 TTTATTTAATTAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTT
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATT-AA--A--TTA-GGTTA-GGTTAGGGTTTT
50733531 TAA
59 TAA
* * * * *
50733534 -TTATTTAAATTAAGTTA-GGTTAGGGTTTTTAATTTAATTA-ATTAGGTTAGGGTTTGGGTT--
1 TTTAATTAAA-TAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTT---TTAA
*
50733594 TTTAATTAAATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGG-TTTTAA
1 TTTAATTAAA-TAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* ** * *
50733654 TTAAATTAGGTTAGGGTTAGAGTTAGGGTTTTTAATTTAGTTAAATTAGGTTAGGTTAGGGTTTT
1 TTTAATTA-AATA-GGTTAGGGTTTGGGTTTTT-A---A-TTAAATTAGGTTAGGTTAGGGTTTT
50733719 TAA
59 TAA
*
50733722 TTTATTTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* ** * * *
50733783 TTAAATTAGGTTAGGTTA-GGTTAGGGTTTTTAATTTAATTA-ATTAGGTTAGGGTTTGGGTT--
1 TTTAATTA-AATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTT---TTAA
*
50733844 TTTAATT-AA-A--TTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTA-GGTTAGGGTTTTTAA
* * * * *
50733901 -TTATTTAAATTAAGTTA-GGTTAGGGTTTTTAATTTAATTA-ATTAGGTTAGGGTTTGGGTT--
1 TTTAATTAAA-TAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTT---TTAA
* *
50733961 TTTAATTAAATTAGATTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
1 TTTAATTAAA-TAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* *
50734022 -TT-A--AATTAGGTTAGGGTTAGGGTTTTTAATTTAGTTAAATTAGGTTAGGTTAGGGTTTTTA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTT-A---A-TTAAATTAGGTTAGGTTAGGGTTTTTA
50734083 A
61 A
*
50734084 TTTATTTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* * * * *
50734145 TTTAATTAAATTAAGTTA-AGTTAGGGTTTTTAATTTAATTA-ATTAGGTTAGGGTTTGGGTT--
1 TTTAATTAAA-TAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTT---TTAA
*
50734206 TTTAATT-AA-A--TTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTA-GGTTAGGGTTTTTAA
* * * * * *
50734263 -TTATTTAAATTAAGTTA-AGTTAGGGTTTTTAATTTAATTA-ATTAGGTTAGGGTTTGGGTT--
1 TTTAATTAAA-TAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTT---TTAA
50734323 TTTAATTAAATTAGGTTA-GG--T---TTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAA
1 TTTAATTAAA-TAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTA-GG-TTAGGGTTTTTAA
* * *
50734381 -TTATTTAAATTAAGTTA-GGTTAGGGTTTTTAATTTAATTAATTAGGTTAGGTTAGGGTTTTTA
1 TTTAATTAAA-TAGGTTAGGGTTTGGGTTTTTAA-TT-A--AATTAGGTTAGGTTAGGGTTTTTA
50734444 A
61 A
*
50734445 TTTATTTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
50734506 TTTAATTAAATTAAGTTAGGTTAGGGTTTGGGTTTTTAATT-AA--A--TTAGGTTAGGGTTTTT
1 TTTAATT--A--AA--TAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTT
50734566 AA
60 AA
* * *
50734568 -TT-A--AATTAGGTTAGGGTTAGGGTTTTTAATTATTTAAATTAAGTTAGGTTAGGGTTTTTAA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTT-A--A-TTAAATTAGGTTAGGTTAGGGTTTTTAA
*
50734629 TTTAATTAATTAGGTTAGGGTTTGGGTTTTTAATT-AA--A--TTAGGTTAGGGTTTTTAA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* * *
50734685 -TT-A--AATTAGGTTAGGGTTAGGGTTTTTAATTATTTAAATTAAGTTAGGTTAGGGTTTTTAA
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTT-A--A-TTAAATTAGGTTAGGTTAGGGTTTTTAA
* *
50734746 TTTAATTAATTAGGTTAGGGTTTGAGTTTTTAATTAAATTAGGTTAGG
1 TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGG
50734794 GTTTTTAATT
Statistics
Matches: 1238, Mismatches: 82, Indels: 262
0.78 0.05 0.17
Matches are distributed among these distances:
52 43 0.03
53 2 0.00
54 2 0.00
55 8 0.01
56 104 0.08
57 70 0.06
58 31 0.03
59 50 0.04
60 66 0.05
61 403 0.33
62 151 0.12
63 17 0.01
64 27 0.02
65 75 0.06
66 79 0.06
67 77 0.06
68 33 0.03
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (61 bp):
TTTAATTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
Found at i:50733865 original size:23 final size:23
Alignment explanation
Indices: 50733834--50733889 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
50733824 ATTAGGTTAG
*
50733834 GGTTTGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
50733857 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
50733880 GGTTAGGGTT
1 GGTTAGGGTT
50733890 AGGGTTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:50734001 original size:23 final size:23
Alignment explanation
Indices: 50733969--50734039 Score: 88
Period size: 28 Copynumber: 2.9 Consensus size: 23
50733959 TTTTTAATTA
*
50733969 AATTAGATTAGGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTTT
50733992 AATTAAATTAGGTTAGGTTAGGGTTTTT
1 AATT-AA--A--TTAGGTTAGGGTTTTT
50734020 AATTAAATTAGGTTAGGGTT
1 AATTAAATTAGGTTAGGGTT
50734040 AGGGTTTTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
23 17 0.40
24 1 0.02
25 1 0.02
26 1 0.02
27 2 0.05
28 20 0.48
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (23 bp):
AATTAAATTAGGTTAGGGTTTTT
Found at i:50734186 original size:23 final size:23
Alignment explanation
Indices: 50734153--50734251 Score: 72
Period size: 23 Copynumber: 3.9 Consensus size: 23
50734143 AATTTAATTA
*
50734153 AATTAAGTTAAGTTAGGGTTTTT
1 AATTAAATTAAGTTAGGGTTTTT
*
50734176 AATTTAATTAATTAGGTTAGGGTTTGGGTTTTT
1 AA-TT-A--AATTAAGTTAGGG--T---TTT-T
*
50734209 AATTAAATTAGGTTAGGGTTTTT
1 AATTAAATTAAGTTAGGGTTTTT
*
50734232 AATTAAATTAGGTTAGGGTT
1 AATTAAATTAAGTTAGGGTT
50734252 AGGGTTTTTA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
23 23 0.36
24 5 0.08
25 1 0.02
27 12 0.19
29 14 0.22
31 1 0.02
32 5 0.08
33 3 0.05
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.47
Consensus pattern (23 bp):
AATTAAATTAAGTTAGGGTTTTT
Found at i:50734347 original size:23 final size:23
Alignment explanation
Indices: 50734321--50734365 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
50734311 AGGGTTTGGG
50734321 TTTTTAATTAAATTAGGTTAGGT
1 TTTTTAATTAAATTAGGTTAGGT
50734344 TTTTTAATTAAATTAGGTTAGG
1 TTTTTAATTAAATTAGGTTAGG
50734366 GTTTAGGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (23 bp):
TTTTTAATTAAATTAGGTTAGGT
Found at i:50734561 original size:23 final size:23
Alignment explanation
Indices: 50734530--50734585 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
50734520 GTTAGGTTAG
*
50734530 GGTTTGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
50734553 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
50734576 GGTTAGGGTT
1 GGTTAGGGTT
50734586 AGGGTTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:50734678 original size:23 final size:23
Alignment explanation
Indices: 50734647--50734702 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
50734637 ATTAGGTTAG
*
50734647 GGTTTGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
50734670 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
50734693 GGTTAGGGTT
1 GGTTAGGGTT
50734703 AGGGTTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:50734797 original size:23 final size:24
Alignment explanation
Indices: 50734751--50734830 Score: 83
Period size: 23 Copynumber: 3.4 Consensus size: 24
50734741 TTTAATTTAA
** * *
50734751 TTAATTAGGTTAGGGTTTGAGTTT
1 TTAATTAAATTAGGGTTAGGGTTT
50734775 TTAATTAAATTA-GGTTAGGGTTT
1 TTAATTAAATTAGGGTTAGGGTTT
* *
50734798 TTAATT-AAGTAGGGTTAGGGATT
1 TTAATTAAATTAGGGTTAGGGTTT
*
50734821 TTAATCAAAT
1 TTAATTAAAT
50734831 AATGTCAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
22 4 0.09
23 30 0.65
24 12 0.26
ACGTcount: A:0.30, C:0.01, G:0.24, T:0.45
Consensus pattern (24 bp):
TTAATTAAATTAGGGTTAGGGTTT
Found at i:50734798 original size:117 final size:116
Alignment explanation
Indices: 50733282--50734805 Score: 1578
Period size: 117 Copynumber: 12.5 Consensus size: 116
50733272 AATTAGGGTT
*
50733282 TTTAATTAA-ATAGGGTTAGGGTTTTTAATTTAGTTAAATTAGGTTAGGTTAGGGTTTTTAATTT
1 TTTAATTAAGTTA-GGTTAGGGTTTTTAATTTA-TT-AATTAGGTTAGGTTAGGGTTTTTAA-TT
* * *
50733346 AATTAAATAGGTTAGGGTTTGAGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
62 -A--AATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* *
50733404 TTAAATTAGGTTAGGGTTAGGGTTTTTAATTTAGTTAAATTAGGTTAGGTTAGGGTTTTTAATTT
1 TTTAATTAAGTTA-GGTTAGGGTTTTTAATTTA-TT-AATTAGGTTAGGTTAGGGTTTTTAA-TT
*
50733469 ATTTAATTAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAA
62 A---AATTAGGTTAGGGTTAGGGTTTTTAATT-AA--A--TTA-GGTTA-GGTTAGGGTTTTT-A
50733534 TTA
116 --A
*
50733537 TTTAAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAATTAGGTTAGGGTTTGGGTTTTTAATTA
1 TTT-AATTAAGTTAGGTTAGGGTTTTTAATTT-ATTAATTAGGTTA-GGTTAGGGTTTTTAATTA
50733602 AATTAGGTTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGG-TTTTAA
63 AATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
*
50733654 TTAAATTAGGTTAGGGTTAGAGTTAGGGTTTTTAATTTAGTTAAATTAGGTTAGGTTAGGGTTTT
1 TTTAATTA----A--GTTAG-GTTAGGGTTTTTAATTTA-TT-AATTAGGTTAGGTTAGGGTTTT
* *
50733719 TAATTTATTTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
57 TAA-TTA---AATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* *
50733783 TTAAATTAGGTTAGGTTAGGTTAGGGTTTTTAATTTAATTAATTAGGTTAGGGTTTGGGTTTTTA
1 TTTAATTA----A-GTTAGGTTAGGGTTTTTAATTT-ATTAATTAGGTTA-GGTTAGGGTTTTTA
50733848 ATT-AA--A--TTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTA
59 ATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTA-GGTTAGGGTTTTT-A--A
*
50733904 TTTAAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAATTAGGTTAGGGTTTGGGTTTTTAATTA
1 TTT-AATTAAGTTAGGTTAGGGTTTTTAATTT-ATTAATTAGGTTA-GGTTAGGGTTTTTAATTA
*
50733969 AATTAGATTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
63 AATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* *
50734022 TTAAATTAGGTTAGGGTTAGGGTTTTTAATTTAGTTAAATTAGGTTAGGTTAGGGTTTTTAATTT
1 TTTAATTAAGTTA-GGTTAGGGTTTTTAATTTA-TT-AATTAGGTTAGGTTAGGGTTTTTAA-TT
* *
50734087 ATTTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
62 A---AATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
* *
50734145 TTTAATTAAATTAAGTTAAGTTAGGGTTTTTAATTTAATTAATTAGGTTAGGGTTTGGGTTTTTA
1 --T--TT-AATTAAGTTAGGTTAGGGTTTTTAATTT-ATTAATTAGGTTA-GGTTAGGGTTTTTA
50734210 ATT-AA--A--TTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTA
59 ATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTA-GGTTAGGGTTTTT-A--A
* *
50734266 TTTAAATTAAGTTAAGTTAGGGTTTTTAATTTAATTAATTAGGTTAGGGTTTGGGTTTTTAATTA
1 TTT-AATTAAGTTAGGTTAGGGTTTTTAATTT-ATTAATTAGGTTA-GGTTAGGGTTTTTAATTA
50734331 AATTAGGTTA-GG-T----TTTTTAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTA
63 AATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTA-GG-TTAGGGTTTTT-A--A
50734384 TTTAAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAATTAGGTTAGGTTAGGGTTTTTAATTTA
1 TTT-AATTAAGTTAGGTTAGGGTTTTTAATTT-ATTAATTAGGTTAGGTTAGGGTTTTTAA-TTA
* *
50734449 TTTAAATAGGTTAGGGTTTGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
63 ---AATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
*** **
50734506 TTTAATTAAATTAAGTTAGGTTAGGG-TTTGGGTTT-TTAATTAAATTAGGTTAGGGTTTTTAAT
1 --T--TT-AATTAAGTTAGGTTAGGGTTTTTAATTTATTAATTAGGTTAGGTTAGGGTTTTTAAT
*
50734569 TAAATTAGGTTAGGGTTAGGGTTTTTAATTATTTAAATTAAGTTAGGTTAGGGTTTTTAA
61 TAAATTAGGTTAGGGTTAGGGTTTTT-A--A-TTAAATTAGGTTAGGTTAGGGTTTTTAA
*** **
50734629 TTTAATTAA-TTAGGTTAGGG-TTTGGGTTT-TTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
1 TTTAATTAAGTTAGGTTAGGGTTTTTAATTTATTAATTAGGTTAGGTTAGGGTTTTTAATTAAAT
*
50734691 TAGGTTAGGGTTAGGGTTTTTAATTATTTAAATTAAGTTAGGTTAGGGTTTTTAA
66 TAGGTTAGGGTTAGGGTTTTT-A--A-TTAAATTAGGTTAGGTTAGGGTTTTTAA
* * **
50734746 TTTAATTAA-TTAGGTTAGGG-TTTGAGTTT-TTAATTAAATTAGGTTAGGGTTTTTAATTAA
1 TTTAATTAAGTTAGGTTAGGGTTTTTAATTTATTAATTAGGTTAGGTTAGGGTTTTTAATTAA
50734806 GTAGGGTTAG
Statistics
Matches: 1278, Mismatches: 39, Indels: 175
0.86 0.03 0.12
Matches are distributed among these distances:
116 5 0.00
117 388 0.30
118 144 0.11
119 41 0.03
120 11 0.01
121 36 0.03
122 79 0.06
123 213 0.17
124 17 0.01
125 19 0.01
126 48 0.04
127 98 0.08
128 71 0.06
129 34 0.03
130 13 0.01
131 1 0.00
132 13 0.01
133 37 0.03
134 10 0.01
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.48
Consensus pattern (116 bp):
TTTAATTAAGTTAGGTTAGGGTTTTTAATTTATTAATTAGGTTAGGTTAGGGTTTTTAATTAAAT
TAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGGTTTTTAA
Found at i:50736940 original size:22 final size:24
Alignment explanation
Indices: 50736912--50736962 Score: 70
Period size: 22 Copynumber: 2.2 Consensus size: 24
50736902 TTTTATAACA
* *
50736912 AAAAATATATTAAT-AAATATC-T
1 AAAAATACATAAATAAAATATCTT
50736934 AAAAATACATAAATAAAATATCTT
1 AAAAATACATAAATAAAATATCTT
50736958 AAAAA
1 AAAAA
50736963 AATTTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 12 0.48
23 7 0.28
24 6 0.24
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
AAAAATACATAAATAAAATATCTT
Found at i:50737095 original size:28 final size:29
Alignment explanation
Indices: 50737063--50737118 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
50737053 TGAAAATATT
50737063 AAAAATTTTAAAATTAT-TTAAAAAAATA
1 AAAAATTTTAAAATTATCTTAAAAAAATA
*
50737091 AAAAATTTTAAAATTTTCTTAAAAAAAT
1 AAAAATTTTAAAATTATCTTAAAAAAAT
50737119 GAAATTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (29 bp):
AAAAATTTTAAAATTATCTTAAAAAAATA
Found at i:50737190 original size:22 final size:22
Alignment explanation
Indices: 50737160--50737201 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
50737150 ATTTGGAGAT
*
50737160 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
50737182 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
50737202 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:50737209 original size:30 final size:30
Alignment explanation
Indices: 50737173--50737231 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
50737163 TTGAAGGAAA
* *
50737173 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAAATTGAGAGT
*
50737203 TTGAGAGAATTTTGGAAGTAAATTGAGAG
1 TTGAGAGAATTTTGGAAGGAAATTGAGAG
50737232 AAATTTTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAAATTGAGAGT
Found at i:50737226 original size:52 final size:51
Alignment explanation
Indices: 50737151--50737253 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 51
50737141 TTAATATGGA
* * *
50737151 TTTGGAGATTTTTTGAAGGAAATTGAGAG-GATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTT-GAAGGGAA-TTGAGAG
*
50737202 TTTGAGAGAATTTTGGAAGTAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
50737254 AATTTTTGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
51 4 0.09
52 32 0.71
53 9 0.20
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.33
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
Found at i:50737269 original size:22 final size:21
Alignment explanation
Indices: 50737203--50737270 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 21
50737193 ATTTGAGAGT
* *
50737203 TTGAGAGAATTTTGGAAGTAAA
1 TTGAGAGAATTTTGAAAG-GAA
*
50737225 TTGAGAGAAATTTTGAAGGGAA
1 TTGAGAG-AATTTTGAAAGGAA
50737247 TTGAGAGAATTTTTGAAAGGAA
1 TTGAGAGAA-TTTTGAAAGGAA
50737269 TT
1 TT
50737271 TGTTTGTGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.05
22 29 0.73
23 9 0.22
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (21 bp):
TTGAGAGAATTTTGAAAGGAA
Found at i:50742607 original size:24 final size:25
Alignment explanation
Indices: 50742570--50742617 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
50742560 TTTCAAGAAA
50742570 TTTTAAAATATTAT-TT-TTTTTAC
1 TTTTAAAATATTATATTATTTTTAC
50742593 TTTTAAATATATTATATTATTTTTA
1 TTTTAAA-ATATTATATTATTTTTA
50742618 TTTAATAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.32
24 7 0.32
25 2 0.09
26 6 0.27
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTTAAAATATTATATTATTTTTAC
Found at i:50742621 original size:24 final size:22
Alignment explanation
Indices: 50742571--50742622 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 22
50742561 TTCAAGAAAT
50742571 TTTAAAATATTATTTTTTTTAC
1 TTTAAAATATTATTTTTTTTAC
50742593 TTTTAAATATATTATATTATTTTTA-
1 -TTTAAA-ATATTAT-TT-TTTTTAC
50742618 TTTAA
1 TTTAA
50742623 TAAACTATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.23
24 12 0.46
25 2 0.08
26 6 0.23
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTAAAATATTATTTTTTTTAC
Found at i:50748398 original size:30 final size:30
Alignment explanation
Indices: 50748364--50748421 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
50748354 ATGAGCTTTG
50748364 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
* * * *
50748394 GGGCAAAATTGTAATTTTGCCAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
50748422 GAGTCAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAA
Found at i:50748922 original size:23 final size:23
Alignment explanation
Indices: 50748870--50748922 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
50748860 AGTGTTATTG
50748870 ATCAGTGGTAGCTTCGACTACAT
1 ATCAGTGGTAGCTTCGACTACAT
* * *
50748893 TTTAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGACTACAT
50748916 ATCAGTG
1 ATCAGTG
50748923 TGGCACTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGACTACAT
Found at i:50749124 original size:37 final size:38
Alignment explanation
Indices: 50749052--50749124 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 38
50749042 ATGTATGGAA
*
50749052 TTGAATTGAATATTGACTTGAAAATGAAAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
50749090 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAA-TGAAAAAGTGAA
50749125 ATTATGAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 4 0.12
37 14 0.42
38 15 0.45
ACGTcount: A:0.47, C:0.01, G:0.21, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:50750155 original size:8 final size:8
Alignment explanation
Indices: 50750142--50750168 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
50750132 TGACTCCTTC
50750142 ATTTTCAA
1 ATTTTCAA
50750150 ATTTTCAA
1 ATTTTCAA
50750158 ATTTTCAA
1 ATTTTCAA
50750166 ATT
1 ATT
50750169 CCCTTCTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (8 bp):
ATTTTCAA
Found at i:50767994 original size:23 final size:21
Alignment explanation
Indices: 50767952--50767994 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
50767942 AATAGAGAAA
*
50767952 ACGAAATTTCTGGTATATGTT
1 ACGAAATTTCTGGTAGATGTT
50767973 ACGAAATTTCATTGGTAGATGT
1 ACGAAATTTC--TGGTAGATGT
50767995 CTCATTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
23 9 0.47
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (21 bp):
ACGAAATTTCTGGTAGATGTT
Found at i:50771941 original size:20 final size:20
Alignment explanation
Indices: 50771916--50771955 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50771906 GATTTTGTTG
50771916 TTGTTTGAA-TCGATTCAAAA
1 TTGTTT-AACTCGATTCAAAA
*
50771936 TTGTTTAACTCGATTTAAAA
1 TTGTTTAACTCGATTCAAAA
50771956 CCCAACAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (20 bp):
TTGTTTAACTCGATTCAAAA
Found at i:50783172 original size:12 final size:12
Alignment explanation
Indices: 50783155--50783182 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
50783145 TTACATGCAA
50783155 ACCATGAAGCAG
1 ACCATGAAGCAG
50783167 ACCATGAAGCAG
1 ACCATGAAGCAG
50783179 ACCA
1 ACCA
50783183 AGCTGCCCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.29, G:0.21, T:0.07
Consensus pattern (12 bp):
ACCATGAAGCAG
Found at i:50789250 original size:51 final size:51
Alignment explanation
Indices: 50789142--50789320 Score: 297
Period size: 51 Copynumber: 3.5 Consensus size: 51
50789132 CTTACGTATG
* * * *
50789142 ATCACTTATCACTTGTCCCTGATCAAATAAGTGTAGCT-AAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTT
* *
50789192 ATCACTTGCCACTAGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTT
50789243 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTT
50789294 ATCACTTGTCACTTGTCACTGATCAGA
1 ATCACTTGTCACTTGTCACTGATCAGA
50789321 AGTACTCAAA
Statistics
Matches: 120, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 33 0.28
51 87 0.73
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (51 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTT
Found at i:50793628 original size:59 final size:58
Alignment explanation
Indices: 50793561--50793869 Score: 197
Period size: 59 Copynumber: 5.2 Consensus size: 58
50793551 ATTTTATTAA
*
50793561 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATAGTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGT
* * ** * *
50793620 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTA-TT-AA-GA-ATTTTATTA-
1 ATCATATATT-TTA-ATTA--AAA-T-ATAT-TTAATATTAATTATTTAAATTATATTTTA-TAG
*
50793680 A
58 T
* * * *
50793681 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGT
* * **
50793740 ATCATATATTATGATTAGAGTAAATTCATATAAGAATATTAATTA-TT-AA-TA-ATTTTATTA-
1 ATCATATA-T-T--TTA-ATTAAAAT-ATAT-TTAATATTAATTATTTAAATTATATTTTA-TAG
*
50793800 A
58 T
* * *
50793801 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGT
50793860 ATCATATATT
1 ATCATATATT
50793870 ATGATTTGAG
Statistics
Matches: 185, Mismatches: 37, Indels: 56
0.67 0.13 0.20
Matches are distributed among these distances:
54 19 0.10
55 8 0.04
56 10 0.05
57 9 0.05
58 7 0.04
59 41 0.22
60 6 0.03
61 30 0.16
62 7 0.04
63 10 0.05
64 8 0.04
65 10 0.05
66 20 0.11
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (58 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGT
Found at i:50793675 original size:120 final size:120
Alignment explanation
Indices: 50793550--50793967 Score: 730
Period size: 120 Copynumber: 3.5 Consensus size: 120
50793540 AATTATTTTA
* * * *
50793550 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATAGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
*
50793614 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
50793670 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
* * *
50793735 ATAGTATCATATATTATGATTAGAGTAAATTCATATAAGAATATTAATTATTAAT
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
50793790 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
50793855 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
50793910 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
50793968 ATGATTAAAT
Statistics
Matches: 283, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
120 275 0.97
121 8 0.03
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:50793690 original size:61 final size:61
Alignment explanation
Indices: 50793623--50793939 Score: 237
Period size: 61 Copynumber: 5.3 Consensus size: 61
50793613 TTATAGTATC
*
50793623 ATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTATAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * ** * *
50793684 ATATATTTTAATTATAATATATTTA-ATAATAAT-TATG-TTA--AATTATCTTT-TATAGTATC
1 ATATATTATGATTATAGTAAATTCATATAAGAATAT-TGATTATTAAGAAT-TTTAT-TA-AATT
* * *
50793743 ATATATTATGATTAGAGTAAATTCATATAAGAATATTAATTATTAATAATTTTATTAAATT
1 ATATATTATGATTATAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * *
50793804 ATATATTTTAATTATAATATATTTA-ATAATAAT-TATG-TTAAATT-A-TATTTTA-TAGTATC
1 ATATATTATGATTATAGTAAATTCATATAAGAATAT-TGATT--ATTAAGAATTTTATTA-AATT
50793863 ATATATTATGATT-TGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTAT-AGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* *
50793924 ATATATTTTAATTATA
1 ATATATTATGATTATA
50793940 ATATATTTAA
Statistics
Matches: 190, Mismatches: 44, Indels: 44
0.68 0.16 0.16
Matches are distributed among these distances:
57 5 0.03
58 8 0.04
59 57 0.30
60 36 0.19
61 70 0.37
62 8 0.04
63 6 0.03
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTATAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:50793705 original size:16 final size:16
Alignment explanation
Indices: 50793684--50793729 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
50793674 TTATTAAATT
50793684 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
50793700 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
50793715 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
50793730 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:50793824 original size:18 final size:18
Alignment explanation
Indices: 50793778--50793825 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
50793768 TATAAGAATA
*
50793778 TTAATTATTA-ATA-ATT
1 TTAATTATAATATATATT
50793794 TT-ATTA-AATTATATATT
1 TTAATTATAA-TATATATT
50793811 TTAATTATAATATAT
1 TTAATTATAATATAT
50793826 TTAATAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 4 0.15
16 5 0.19
17 5 0.19
18 9 0.35
19 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATTATAATATATATT
Found at i:50793825 original size:16 final size:16
Alignment explanation
Indices: 50793778--50793850 Score: 55
Period size: 16 Copynumber: 4.6 Consensus size: 16
50793768 TATAAGAATA
50793778 TTAATTATTAATA-ATT
1 TTAATTA-TAATATATT
*
50793794 TT-ATTAAATTATATATT
1 TTAATT--ATAATATATT
50793811 TTAATTATAATATA-T
1 TTAATTATAATATATT
*
50793826 TTAATAATAAT-TATGT
1 TTAATTATAATATAT-T
*
50793842 TAAATTATA
1 TTAATTATA
50793851 TTTTATAGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
14 2 0.04
15 14 0.30
16 21 0.46
17 6 0.13
18 3 0.07
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (16 bp):
TTAATTATAATATATT
Found at i:50793927 original size:59 final size:58
Alignment explanation
Indices: 50793624--50793927 Score: 177
Period size: 57 Copynumber: 5.1 Consensus size: 58
50793614 TATAGTATCA
*
50793624 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * *
50793683 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTA-TGTTAA-ATTATCTTT-TATAGTA
1 TATATTATGATTTAAGTA-AAT-TCATATAAGAAT-ATTATTATTAAGA--AT-TTTAT-TA-AA
50793741 T
58 T
*
50793742 CATATATTATGA-TTAGAGTAAATTCATATAAGAATATTAATTATTAATAATTTTATTAAAT
1 --TATATTATGATTTA-AGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * * *
50793803 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTATGT-TAAATTATATTTTA-TAGTAT
1 TATATTATGATTTAAGTA-AAT-TCATATAAGAAT-ATTAT-TATTAA-GA-ATTTTATTA-AAT
*
50793862 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
50793923 TATAT
1 TATAT
50793928 ATTTTAATTA
Statistics
Matches: 186, Mismatches: 23, Indels: 72
0.66 0.08 0.26
Matches are distributed among these distances:
55 1 0.01
56 14 0.08
57 34 0.18
58 24 0.13
59 23 0.12
61 18 0.10
62 23 0.12
63 34 0.18
64 14 0.08
65 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:50793945 original size:16 final size:16
Alignment explanation
Indices: 50793924--50793965 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
50793914 TTATTAAATT
*
50793924 ATATATTTTAATTATA
1 ATATATTTTAATAATA
50793940 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
50793955 AT-TATGTTTAA
1 ATATAT-TTTAA
50793966 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:50793950 original size:15 final size:15
Alignment explanation
Indices: 50793915--50793956 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
50793905 TTAAGAATTT
*
50793915 TATTAAATTAT-ATA
1 TATTTAATTATAATA
50793929 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
50793943 TATTTAATAATAAT
1 TATTTAATTATAAT
50793957 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:50794198 original size:16 final size:16
Alignment explanation
Indices: 50794177--50794209 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50794167 AATTGATTTG
50794177 CTATTACGCCTCTATT
1 CTATTACGCCTCTATT
50794193 CTATTACGCCTCTATT
1 CTATTACGCCTCTATT
50794209 C
1 C
50794210 CAATACAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.33, G:0.06, T:0.42
Consensus pattern (16 bp):
CTATTACGCCTCTATT
Found at i:50794307 original size:16 final size:16
Alignment explanation
Indices: 50794255--50794299 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
50794245 TTGGTTCGCT
50794255 GTAATGGAATAGAAGC
1 GTAATGGAATAGAAGC
50794271 GTAATGGAATAGAAGC
1 GTAATGGAATAGAAGC
*
50794287 GTAATGAAATAGA
1 GTAATGGAATAGA
50794300 GGCATAATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.47, C:0.04, G:0.29, T:0.20
Consensus pattern (16 bp):
GTAATGGAATAGAAGC
Found at i:50794343 original size:45 final size:44
Alignment explanation
Indices: 50794287--50794384 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 44
50794277 GAATAGAAGC
*
50794287 GTAATGAAATAGAGGCATAATAGCAAATCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGGCATAATAG-AAATC-ATGTGTTTGGTTGAAT
* * * *
50794332 GTAATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCATAATAGAAATCATGTGTTTGGTTGAAT
*
50794376 GGAATGGAA
1 GTAATGGAA
50794385 GTGTAATAGC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 1 0.02
44 24 0.52
45 21 0.46
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.33
Consensus pattern (44 bp):
GTAATGGAATAGAGGCATAATAGAAATCATGTGTTTGGTTGAAT
Found at i:50795409 original size:11 final size:11
Alignment explanation
Indices: 50795393--50795418 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50795383 ATGCAAACTC
50795393 ACAAGCTCCAG
1 ACAAGCTCCAG
50795404 ACAAGCTCCAG
1 ACAAGCTCCAG
50795415 ACAA
1 ACAA
50795419 CAAGGGACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.35, G:0.15, T:0.08
Consensus pattern (11 bp):
ACAAGCTCCAG
Found at i:50796243 original size:33 final size:33
Alignment explanation
Indices: 50796201--50796267 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
50796191 TAAAACAGTG
50796201 CAACTTTAATATAACACCACAAGAAACCTAATA
1 CAACTTTAATATAACACCACAAGAAACCTAATA
50796234 CAACTTTAATATAACACCACAAGAAACCTAATA
1 CAACTTTAATATAACACCACAAGAAACCTAATA
50796267 C
1 C
50796268 TTACCAAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.51, C:0.25, G:0.03, T:0.21
Consensus pattern (33 bp):
CAACTTTAATATAACACCACAAGAAACCTAATA
Found at i:50797438 original size:14 final size:14
Alignment explanation
Indices: 50797419--50797446 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50797409 AGCAGAAATC
50797419 TGGAGAAAAGAAAA
1 TGGAGAAAAGAAAA
50797433 TGGAGAAAAGAAAA
1 TGGAGAAAAGAAAA
50797447 AAATGTGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.29, T:0.07
Consensus pattern (14 bp):
TGGAGAAAAGAAAA
Found at i:50797464 original size:18 final size:17
Alignment explanation
Indices: 50797422--50797465 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
50797412 AGAAATCTGG
*
50797422 AGAAAAGAAAATGGAGA
1 AGAAAAAAAAATGGAGA
50797439 A-AAGAAAAAAATGTGAGA
1 AGAA-AAAAAAATG-GAGA
50797457 AGAAAAAAA
1 AGAAAAAAA
50797466 GCGTACCGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 2 0.09
17 9 0.39
18 10 0.43
19 2 0.09
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.07
Consensus pattern (17 bp):
AGAAAAAAAAATGGAGA
Found at i:50810106 original size:11 final size:11
Alignment explanation
Indices: 50810090--50810114 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50810080 AATTATTCAA
50810090 TTTTTTATTTT
1 TTTTTTATTTT
50810101 TTTTTTATTTT
1 TTTTTTATTTT
50810112 TTT
1 TTT
50810115 AAATTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTATTTT
Found at i:50814707 original size:41 final size:41
Alignment explanation
Indices: 50814639--50814755 Score: 189
Period size: 41 Copynumber: 2.9 Consensus size: 41
50814629 TTAGCTTTTG
* * *
50814639 GGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGGTCA
1 GGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATGGTCA
* *
50814680 GGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCAAATGGTCA
1 GGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATGGTCA
50814721 GGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAA
1 GGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAA
50814756 AAAACATAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (41 bp):
GGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATGGTCA
Found at i:50814795 original size:155 final size:154
Alignment explanation
Indices: 50814589--50814869 Score: 429
Period size: 155 Copynumber: 1.8 Consensus size: 154
50814579 CGTTTTCCAA
* * * * *
50814589 AAAGCGCCGCAAATAACCTAAGCCCAACGACGCCGTTTTCTTAGCTTTTGGGGATTTAGCGGCGT
1 AAAGCGCCGCAAAAAACATAAGCCCAACGACGCCGTTTTCTTAGCTGTTGGGGATTTAACAGCGT
* * **
50814654 TTTTAATAAAGCGCCGCTAATGGTCAGGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCAAATGGT
66 TTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGCGTTTTTGAAAAAGCGCCGCAAATGGT
50814719 CAGGGATTTAGCGGCGTTTTTGAG
131 CAGGGATTTAGCGGCGTTTTTGAG
* *
50814743 AAAGCGCCGCAAAAAAACATAAGCCCAACGATGCCGTTTT-TTGGGCTGTTGGGGATTTAACAGC
1 AAAGCGCCGC-AAAAAACATAAGCCCAACGACGCCGTTTTCTT-AGCTGTTGGGGATTTAACAGC
*
50814807 GTTTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGTGTTTTTGAAAAAGCGCCGCAAA
64 GTTTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGCGTTTTTGAAAAAGCGCCGCAAA
50814870 AAAACATAAG
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
154 12 0.11
155 101 0.89
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (154 bp):
AAAGCGCCGCAAAAAACATAAGCCCAACGACGCCGTTTTCTTAGCTGTTGGGGATTTAACAGCGT
TTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGCGTTTTTGAAAAAGCGCCGCAAATGGT
CAGGGATTTAGCGGCGTTTTTGAG
Found at i:50815160 original size:113 final size:114
Alignment explanation
Indices: 50814684--50815163 Score: 746
Period size: 114 Copynumber: 4.2 Consensus size: 114
50814674 TGGTCAGGGC
* * * *
50814684 TTTAGCGGCGTTTTTGAGGAAGCGCCGCAAATGGTCAGGGATTTAGCGGCGTTTTTGAGAAAGCG
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGCGTTTTTGAAAAAGCG
* * *
50814749 CCGCAAAAAAACATAAGCCCAACGATGCCGTTTTTTGGGCTGTTGGGGA
66 CCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGA
* * *
50814798 TTTAACAGCGTTTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGTGTTTTTGAAAAAGCG
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGCGTTTTTGAAAAAGCG
* *
50814863 CCGCAAAAAAACATAAGCCCAACGACGCTGTTTTGTGGGCTTTTGGTGA
66 CCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGA
*
50814912 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGGTCAGGGCTTTAGCGGCGTTTTTGAAAAAGCG
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGCGTTTTTGAAAAAGCG
50814977 CCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGA
66 CCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGA
* * * * * * * *
50815026 TTTTGCGACGTTTTTAAGAAAGCACCGCTAATGCTTAGGGCTTTAACGGCGTTTTTGAGAAAGCG
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGCGTTTTTGAAAAAGCG
* *
50815091 CTGC-AAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTCGGGGA
66 CCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGA
50815139 TTTAGCGGCGTTTTTAAGAAAGCGC
1 TTTAGCGGCGTTTTTAAGAAAGCGC
50815164 AGTAAAAAAA
Statistics
Matches: 336, Mismatches: 30, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
113 65 0.19
114 271 0.81
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGGTCAGGGATTTAGCGGCGTTTTTGAAAAAGCG
CCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGA
Found at i:50815196 original size:73 final size:72
Alignment explanation
Indices: 50815067--50815220 Score: 236
Period size: 73 Copynumber: 2.1 Consensus size: 72
50815057 TGCTTAGGGC
* * * * * *
50815067 TTTAACGGCGTTTTTGAGAAAGCGCTGCAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTT
1 TTTAGCGGCGTTTTTAAGAAAGCGCAGAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCTT
50815132 TCGGGGA
66 TCGGGGA
*
50815139 TTTAGCGGCGTTTTTAAGAAAGCGCAGTAAAAAAACATAAGCCAAATGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCAG-AAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCT
50815204 TTCGGGGA
65 TTCGGGGA
50815212 TTTAGCGGC
1 TTTAGCGGC
50815221 CAAAAAAATA
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 24 0.32
73 50 0.68
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (72 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCAGAAAAAAACATAAGCCAAACGACGCCGTTTTGTGAGCTT
TCGGGGA
Found at i:50815407 original size:14 final size:14
Alignment explanation
Indices: 50815373--50815421 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
50815363 TAAGGCCGGT
* *
50815373 TTAGGGAGTATGGCT
1 TTAGGGATTATGG-A
50815388 TTAGGGATTATGGA
1 TTAGGGATTATGGA
50815402 TTAGGGATTATGGA
1 TTAGGGATTATGGA
50815416 TTAGGG
1 TTAGGG
50815422 GTTGGGATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.24, C:0.02, G:0.39, T:0.35
Consensus pattern (14 bp):
TTAGGGATTATGGA
Found at i:50815453 original size:15 final size:15
Alignment explanation
Indices: 50815387--50815455 Score: 54
Period size: 14 Copynumber: 4.8 Consensus size: 15
50815377 GGAGTATGGC
* *
50815387 TTTAGGGATTATGGA
1 TTTAGGGGTTAGGGA
* *
50815402 -TTAGGGATTATGGA
1 TTTAGGGGTTAGGGA
50815416 -TTAGGGGTT-GGGA
1 TTTAGGGGTTAGGGA
** *
50815429 TTTAAAGGTTAGGGG
1 TTTAGGGGTTAGGGA
50815444 TTTAGGGGTTAG
1 TTTAGGGGTTAG
50815456 ACGTGCTAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
13 3 0.07
14 29 0.64
15 13 0.29
ACGTcount: A:0.23, C:0.00, G:0.41, T:0.36
Consensus pattern (15 bp):
TTTAGGGGTTAGGGA
Found at i:50815691 original size:14 final size:15
Alignment explanation
Indices: 50815657--50815695 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
50815647 ATTTTAAGGT
* *
50815657 TTAGGGAGTATGGAT
1 TTAGGGATTATGGAA
50815672 TTAGGGATTAT-GAA
1 TTAGGGATTATGGAA
50815686 TTAGGGATTA
1 TTAGGGATTA
50815696 CGATTTAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
TTAGGGATTATGGAA
Found at i:50815771 original size:15 final size:14
Alignment explanation
Indices: 50815714--50815770 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 14
50815704 GTGTTTGGAT
50815714 TTAAGGTTTAGGGG
1 TTAAGGTTTAGGGG
50815728 TTAAGGGTTTAGGGG
1 TTAA-GGTTTAGGGG
50815743 TTAAGAG-TTAGGGAG
1 TTAAG-GTTTAGGG-G
50815758 TTAAGGTTTAGGG
1 TTAAGGTTTAGGG
50815771 ATTCAGGGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
14 12 0.31
15 27 0.69
ACGTcount: A:0.25, C:0.00, G:0.42, T:0.33
Consensus pattern (14 bp):
TTAAGGTTTAGGGG
Found at i:50816909 original size:143 final size:146
Alignment explanation
Indices: 50816666--50816997 Score: 564
Period size: 143 Copynumber: 2.3 Consensus size: 146
50816656 AATTTTTAGA
* *
50816666 ATAGCAAAACGGCGTAGTTTTGTTCAAAATGAAA-TTTTTTGCGGCGTTTTTATGAGAAACGCCG
1 ATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCG--TTTA-GAGAAACACCG
50816730 CTAAAGGTAAGCAATAGCGGCGTTTTTGTAAAAAACGCAACAAAATAATTTTACTTTTAAAAAAT
63 CTAAAGGTAAGCAATAGCGGCGTTTTTGTAAAAAACGCAACAAAATAATTTTACTTTTAAAAAAT
*
50816795 AGCCCCCTTTTAGCATAGC
128 AGCCCCATTTTAGCATAGC
*
50816814 ATAGCAAAACGGCGTAGTTTTATTCAAAATAAAATTTTTTTGCGGCG-TTA-A-AAACACCGCTA
1 ATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTAGAGAAACACCGCTA
*
50816876 AAGGTAAGCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGC
66 AAGGTAAGCAATAGCGGCGTTTTTGTAAAAAACGCAACAAAATAATTTTACTTTTAAAAAATAGC
50816941 CCCATTTTAGCATAGC
131 CCCATTTTAGCATAGC
50816957 ATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTT
1 ATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTT
50816998 AAAGGTAAGC
Statistics
Matches: 177, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
143 129 0.73
144 1 0.01
146 3 0.02
148 32 0.18
149 12 0.07
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.31
Consensus pattern (146 bp):
ATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTAGAGAAACACCGCTA
AAGGTAAGCAATAGCGGCGTTTTTGTAAAAAACGCAACAAAATAATTTTACTTTTAAAAAATAGC
CCCATTTTAGCATAGC
Found at i:50817119 original size:123 final size:123
Alignment explanation
Indices: 50816874--50817120 Score: 460
Period size: 123 Copynumber: 2.0 Consensus size: 123
50816864 AAAACACCGC
*
50816874 TAAAGGTAAGCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
1 TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
*
50816939 GCCCCATTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTT
66 GCCCCATTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAAATTTTT
50816997 TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
1 TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
50817062 GCCCC-TTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAAAATTTTT
66 GCCCCATTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATG-AAAATTTTT
50817120 T
1 T
50817121 GCGGCGTTTT
Statistics
Matches: 121, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
122 43 0.36
123 78 0.64
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.32
Consensus pattern (123 bp):
TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
GCCCCATTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAAATTTTT
Found at i:50817187 original size:279 final size:284
Alignment explanation
Indices: 50816862--50817444 Score: 827
Period size: 279 Copynumber: 2.0 Consensus size: 284
50816852 TTTGCGGCGT
*
50816862 TAAAAACACCGCTAAAGGTAAGCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTAC
1 TAAAAACACCGCTAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTAC
50816927 TTTTAAAAAATAGCCCCATTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATG-AAA
66 TTTTAAAAAATAGCCCCATTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAAA
50816991 -TT-TTT-T-TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTT
131 TTTGTTTGTATAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTT
* * *
50817052 TTAAAAAATAGCCCC-TTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAAAAT
196 TTAAAAAATAGCCCCATTTTAACATAGCATAGCAAAACGGCATAGTTTTATTCAAAATGAAAAAA
* * *
50817116 TTTTTGCGGCGTTTTTATGAAAAAA
261 CTTTTACGGCGTGTTTAT-AAAAAA
*
50817141 TAAAAACGCCGCTAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTAC
1 TAAAAACACCGCTAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTAC
* *
50817206 TTTTAAAAAATAGCCCCCTTTTAGCATAGCATAGCAAAACGGTGTAGTTTTATTCAAAATGAAAA
66 TTTTAAAAAATAGCCCCATTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAAA
*
50817271 TTTTTTGCGGCGTTTGCGTAAAAACGCCGCTAAAGGTAAGCAATAGCGGCGTTTTTGTAAAAAAC
131 ---TTT-----GTTT--GT----A------TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAAC
*
50817336 GCCACAAAATAATTTTACTTTTAAAAAATAGCCCCATTTTAACATAGCATAGCAAAACGGTATAG
176 GCCACAAAATAATTTTACTTTTAAAAAATAGCCCCATTTTAACATAGCATAGCAAAACGGCATAG
50817401 TTTTATTCAAAATGAAAAAACTTTTACGGCGTGTTTATAAAAAA
241 TTTTATTCAAAATGAAAAAACTTTTACGGCGTGTTTATAAAAAA
50817445 CGCCGCTAAA
Statistics
Matches: 266, Mismatches: 12, Indels: 27
0.87 0.04 0.09
Matches are distributed among these distances:
279 122 0.46
280 3 0.01
284 2 0.01
290 3 0.01
293 1 0.00
304 75 0.28
305 60 0.23
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.30
Consensus pattern (284 bp):
TAAAAACACCGCTAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTAC
TTTTAAAAAATAGCCCCATTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAAA
TTTGTTTGTATAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTT
TTAAAAAATAGCCCCATTTTAACATAGCATAGCAAAACGGCATAGTTTTATTCAAAATGAAAAAA
CTTTTACGGCGTGTTTATAAAAAA
Found at i:50817409 original size:148 final size:148
Alignment explanation
Indices: 50816997--50817476 Score: 721
Period size: 148 Copynumber: 3.2 Consensus size: 148
50816987 GAAATTTTTT
50816997 TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
1 TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
*
50817062 GCCCCTTTTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAAAATTTTTTGCGGCG
66 GCCCCTTTTAGCATAGCATAGCAAAACGGTGTAGTTTTATTCAAAATGAAAAATTTTTTGCGGCG
50817127 TTTTTATGAAAAAATAAAAACGCCGC
131 ---TT-TG----AATAAAAACGCCGC
50817153 TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
1 TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
50817218 GCCCCCTTTTAGCATAGCATAGCAAAACGGTGTAGTTTTATTCAAAATG-AAAATTTTTTGCGGC
66 G-CCCCTTTTAGCATAGCATAGCAAAACGGTGTAGTTTTATTCAAAATGAAAAATTTTTTGCGGC
**
50817282 GTTTGCGTAAAAACGCCGC
130 GTTTGAATAAAAACGCCGC
*
50817301 TAAAGGTAAGCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
1 TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
* * ** *
50817366 GCCCCATTTTAACATAGCATAGCAAAACGGTATAGTTTTATTCAAAATGAAAAAACTTTTACGGC
66 GCCCC-TTTTAGCATAGCATAGCAAAACGGTGTAGTTTTATTCAAAATGAAAAATTTTTTGCGGC
*
50817431 GTGTT-TATAAAAAACGCCGC
130 GT-TTGAAT-AAAAACGCCGC
* * *
50817451 TAAAAGTAAGCAATAGTGGCGTTTTT
1 TAAAGGTAAGCAATAGCGACGTTTTT
50817477 AAAGAAAACG
Statistics
Matches: 306, Mismatches: 13, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
147 4 0.01
148 118 0.39
149 15 0.05
150 37 0.12
152 2 0.01
153 2 0.01
156 82 0.27
157 46 0.15
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (148 bp):
TAAAGGTAAGCAATAGCGACGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATA
GCCCCTTTTAGCATAGCATAGCAAAACGGTGTAGTTTTATTCAAAATGAAAAATTTTTTGCGGCG
TTTGAATAAAAACGCCGC
Done.