Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 200 of 214
Found at i:58552151 original size:30 final size:30
Alignment explanation
Indices: 58552111--58552168 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
58552101 CATCAAGTCA
* *
58552111 TTCATTAAGTCATTCATTAAGTGTTTTTTT
1 TTCATCAAGTCATTCATCAAGTGTTTTTTT
*
58552141 TTCATCAAGTCTTTCATCAAGTGTTTTT
1 TTCATCAAGTCATTCATCAAGTGTTTTT
58552169 CATCAAGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.14, G:0.10, T:0.53
Consensus pattern (30 bp):
TTCATCAAGTCATTCATCAAGTGTTTTTTT
Found at i:58552174 original size:26 final size:25
Alignment explanation
Indices: 58552137--58552192 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
58552127 TTAAGTGTTT
*
58552137 TTTTTTCATCAAGTCTTTCATCAAG
1 TTTTTTCATCAAGTCTTTAATCAAG
*
58552162 TGTTTTTCATCAAGTTTTTAATCAAG
1 T-TTTTTCATCAAGTCTTTAATCAAG
58552188 TTTTT
1 TTTTT
58552193 AATTACCAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 5 0.18
26 23 0.82
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.54
Consensus pattern (25 bp):
TTTTTTCATCAAGTCTTTAATCAAG
Found at i:58552195 original size:12 final size:12
Alignment explanation
Indices: 58552138--58552192 Score: 74
Period size: 12 Copynumber: 4.4 Consensus size: 12
58552128 TAAGTGTTTT
58552138 TTTTTCATCAAG
1 TTTTTCATCAAG
*
58552150 TCTTTCATCAAGTG
1 TTTTTCATCAA--G
58552164 TTTTTCATCAAG
1 TTTTTCATCAAG
*
58552176 TTTTTAATCAAG
1 TTTTTCATCAAG
58552188 TTTTT
1 TTTTT
58552193 AATTACCAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
12 27 0.71
14 11 0.29
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.53
Consensus pattern (12 bp):
TTTTTCATCAAG
Found at i:58561650 original size:22 final size:21
Alignment explanation
Indices: 58561623--58561808 Score: 154
Period size: 22 Copynumber: 9.0 Consensus size: 21
58561613 TAGATTAGAA
*
58561623 TTTTGTATGAATATTTTAAATT
1 TTTTGTATGAATATTGT-AATT
*
58561645 TTTTGTATGAATATTATAATT
1 TTTTGTATGAATATTGTAATT
58561666 TTTT-TATGAATATTGTAA--
1 TTTTGTATGAATATTGTAATT
*
58561684 TGTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
* *
58561705 ATTTTATAATTAA-ATTTGT-ATT
1 -TTTTGT-ATGAATA-TTGTAATT
* * * * *
58561727 TATAGTTTTGGAT-TAGTAATT
1 TTTTG-TATGAATATTGTAATT
58561748 TTTTGTATGAATATTGTAA--
1 TTTTGTATGAATATTGTAATT
* *
58561767 TTTTGTATGAATATTATAAATA
1 TTTTGTATGAATATTGT-AATT
58561789 TTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
58561809 AATATTATAG
Statistics
Matches: 131, Mismatches: 20, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
18 3 0.02
19 30 0.23
20 23 0.18
21 26 0.20
22 41 0.31
23 8 0.06
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (21 bp):
TTTTGTATGAATATTGTAATT
Found at i:58561694 original size:19 final size:19
Alignment explanation
Indices: 58561647--58561703 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
58561637 TTTAAATTTT
* *
58561647 TTGTATGAATATTATAATTT
1 TTGTATGAATATTGTAA-TG
*
58561667 TTTTATGAATATTGTAATG
1 TTGTATGAATATTGTAATG
58561686 TTGTATGAATATTGTAAT
1 TTGTATGAATATTGTAAT
58561704 TATTTTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (19 bp):
TTGTATGAATATTGTAATG
Found at i:58561709 original size:83 final size:85
Alignment explanation
Indices: 58561622--58561865 Score: 241
Period size: 83 Copynumber: 2.8 Consensus size: 85
58561612 TTAGATTAGA
58561622 ATTTTGTATGAATATTT-TAAATTTTTTGTATGAATATTATAATTTTTT-TATGAATATTGTAAT
1 ATTTTGTATGAATATTTATAAATTTTTTGTATGAATATTATAATTTTTTGTATGAATATTGTAAT
* * *
58561685 GTTGTATGAATATTGTAATT
66 TTTGTATGAATATTATAAAT
* * * * * * *
58561705 ATTTTATAATTAA-ATTTGT--ATTTATAGTTTTG--GATTAGTAATTTTTTGTATGAATATTGT
1 ATTTTGT-ATGAATATTTATAAATTTTTTG-TATGAATATTA-TAATTTTTTGTATGAATATTGT
58561765 AATTTTGTATGAATATTATAAAT
63 AATTTTGTATGAATATTATAAAT
**
58561788 ATTTTGTATGAATATTGTAATAATATTATAGTTTTGTATGAATATTGCAATTTTTTGTATGAATA
1 ATTTTGTATGAATATT-T-ATAA-A-T-T--TTTTGTATGAATATTATAATTTTTTGTATGAATA
58561853 TTGTAATTTTGTA
59 TTGTAATTTTGTA
58561866 ATTTTGTATG
Statistics
Matches: 126, Mismatches: 18, Indels: 25
0.75 0.11 0.15
Matches are distributed among these distances:
81 4 0.03
82 19 0.15
83 54 0.43
84 6 0.05
85 1 0.01
88 1 0.01
89 1 0.01
90 1 0.01
91 3 0.02
92 33 0.26
93 3 0.02
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (85 bp):
ATTTTGTATGAATATTTATAAATTTTTTGTATGAATATTATAATTTTTTGTATGAATATTGTAAT
TTTGTATGAATATTATAAAT
Found at i:58561772 original size:19 final size:19
Alignment explanation
Indices: 58561748--58561865 Score: 99
Period size: 19 Copynumber: 6.4 Consensus size: 19
58561738 ATTAGTAATT
58561748 TTTTGTATGAATATTGTAA
1 TTTTGTATGAATATTGTAA
*
58561767 TTTTGTATGAATATTATAAATA
1 TTTTGTATGAATATTGT--A-A
58561789 TTTTGTATGAATATTGT-A
1 TTTTGTATGAATATTGTAA
* *
58561807 ------AT-AATATTATAG
1 TTTTGTATGAATATTGTAA
*
58561819 TTTTGTATGAATATTGCAA
1 TTTTGTATGAATATTGTAA
58561838 TTTTTTGTATGAATATTGTAA
1 --TTTTGTATGAATATTGTAA
58561859 TTTTGTA
1 TTTTGTA
58561866 ATTTTGTATG
Statistics
Matches: 78, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
11 7 0.09
12 2 0.03
18 3 0.04
19 30 0.38
21 19 0.24
22 17 0.22
ACGTcount: A:0.33, C:0.01, G:0.14, T:0.53
Consensus pattern (19 bp):
TTTTGTATGAATATTGTAA
Found at i:58561876 original size:27 final size:25
Alignment explanation
Indices: 58561764--58561984 Score: 189
Period size: 27 Copynumber: 8.9 Consensus size: 25
58561754 ATGAATATTG
* *
58561764 TAATTTTGTATGAATATTATAA--A
1 TAATTTTGTATGAATATTGTAATTT
58561787 T-ATTTTGTATGAATATTGTAATAATAT
1 TAATTTTGTATGAATATTGTAAT--T-T
*
58561814 TATAGTTTTGTATGAATATTGCAA--T
1 TA-A-TTTTGTATGAATATTGTAATTT
58561839 T--TTTTGTATGAATATTGTAATTTT
1 TAATTTTGTATGAATATTGTAA-TTT
*
58561863 GTAATTTTGTATGAATATTAT-ATTT
1 -TAATTTTGTATGAATATTGTAATTT
*
58561888 T--TTTTGTATGAATGTTGTAATATT
1 TAATTTTGTATGAATATTGTAAT-TT
*
58561912 ATAATTTTGTATGAATATTGCAA-TT
1 -TAATTTTGTATGAATATTGTAATTT
58561937 T--TTTTGTATGAATATTGTAATATT
1 TAATTTTGTATGAATATTGTAAT-TT
*
58561961 GTAATTTTGCATGAATATTGTAAT
1 -TAATTTTGTATGAATATTGTAAT
58561985 GTGAGGATAT
Statistics
Matches: 163, Mismatches: 11, Indels: 44
0.75 0.05 0.20
Matches are distributed among these distances:
21 18 0.11
22 52 0.32
23 3 0.02
24 7 0.04
25 10 0.06
26 1 0.01
27 53 0.33
29 1 0.01
30 18 0.11
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.53
Consensus pattern (25 bp):
TAATTTTGTATGAATATTGTAATTT
Found at i:58561883 original size:100 final size:98
Alignment explanation
Indices: 58561757--58561979 Score: 349
Period size: 100 Copynumber: 2.3 Consensus size: 98
58561747 TTTTTGTATG
*
58561757 AATATTGTAATTTTGTATGAATATTATAAATATTTTGTATGAATATTGTAATAATATTATAGTTT
1 AATATTGTAATTTTGTATGAATATTATAAATATTTTGTATGAATATTG---TAATATTATAATTT
58561822 TGTATGAATATTGCAA-TTTTTTGTATGAATATTGT
63 TGTATGAATATTGCAATTTTTTTGTATGAATATTGT
* ** * *
58561857 AATTTTGTAATTTTGTATGAATATTATATTTTTTTTGTATGAATGTTGTAATATTATAATTTTGT
1 AATATTGTAATTTTGTATGAATATTATAAATATTTTGTATGAATATTGTAATATTATAATTTTGT
58561922 ATGAATATTGCAATTTTTTTGTATGAATATTGT
66 ATGAATATTGCAATTTTTTTGTATGAATATTGT
*
58561955 AATATTGTAATTTTGCATGAATATT
1 AATATTGTAATTTTGTATGAATATT
58561980 GTAATGTGAG
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
97 29 0.25
98 42 0.37
100 43 0.38
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.53
Consensus pattern (98 bp):
AATATTGTAATTTTGTATGAATATTATAAATATTTTGTATGAATATTGTAATATTATAATTTTGT
ATGAATATTGCAATTTTTTTGTATGAATATTGT
Found at i:58561930 original size:19 final size:19
Alignment explanation
Indices: 58561906--58561963 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 19
58561896 TGAATGTTGT
58561906 AATATTATAATTTTGTATG
1 AATATTATAATTTTGTATG
**
58561925 AATATTGCAATTTTTTTGTATG
1 AATATT---ATAATTTTGTATG
* *
58561947 AATATTGTAATATTGTA
1 AATATTATAATTTTGTA
58561964 ATTTTGCATG
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
19 13 0.43
22 17 0.57
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (19 bp):
AATATTATAATTTTGTATG
Found at i:58561980 original size:49 final size:49
Alignment explanation
Indices: 58561757--58561980 Score: 299
Period size: 49 Copynumber: 4.5 Consensus size: 49
58561747 TTTTTGTATG
** * *
58561757 AATATTGTAATTTTGTATGAATATTATAAATATTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
58561806 AATAATAT-TATAGTTTTGTATGAATATTGCAA-TTTTTTGTATGAATATTGT
1 AAT-AT-TGTA-A-TTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
* ** * *
58561857 AATTTTGTAATTTTGTATGAATATTATATTTTTTTTGTATGAATGTTGT
1 AATATTGTAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
*
58561906 AATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
*
58561955 AATATTGTAATTTTGCATGAATATTG
1 AATATTGTAATTTTGTATGAATATTG
58561981 TAATGTGAGG
Statistics
Matches: 153, Mismatches: 16, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
48 16 0.10
49 90 0.59
50 7 0.05
51 23 0.15
52 17 0.11
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.53
Consensus pattern (49 bp):
AATATTGTAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
Found at i:58562057 original size:149 final size:147
Alignment explanation
Indices: 58561757--58562050 Score: 316
Period size: 149 Copynumber: 2.0 Consensus size: 147
58561747 TTTTTGTATG
* *
58561757 AATATTGTAATTTTGTATGAATATTATAAATATTTTGTATGAATATTGTAATAATATTATAGTTT
1 AATATTATAATTTTGTATGAATATTACAAATATTTTGTATGAATATTGTAATAATATTATAGTTT
* * * * *
58561822 TGTATGAATATTGCAATTTTTTGTATGAATATTGTAATTTTGTAATTTTGTATGAATATTATATT
66 TGCATGAATATTGCAA--TTGTGTAGGAATATTGTAATATTGCAATTTTGTATGAATATTATATT
* * **
58561887 TTTTTTGTATGAATGTTGT
129 GTTTATAAATGAATGTTGT
* * *
58561906 AATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTAAT-AT-TGTA-A-TT
1 AATATTATAATTTTGTATGAATATTACAAATATTTTGTATGAATATTGTAATAATAT-TATAGTT
* *
58561967 TTGCATGAATATTGTAA-TGTG-AGGATATATTGTAATATTGCAATTTTTTGTATGAATATTGTA
65 TTGCATGAATATTGCAATTGTGTAGGA-ATATTGTAATATTGCAA--TTTTGTATGAATATTAT-
58562030 ATTAGTTTATAAAT-AAT-TTGT
126 ATT-GTTTATAAATGAATGTTGT
58562051 TAGTAATTTG
Statistics
Matches: 123, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
142 3 0.02
143 18 0.15
145 20 0.16
146 23 0.19
147 8 0.07
148 4 0.03
149 47 0.38
ACGTcount: A:0.33, C:0.01, G:0.14, T:0.52
Consensus pattern (147 bp):
AATATTATAATTTTGTATGAATATTACAAATATTTTGTATGAATATTGTAATAATATTATAGTTT
TGCATGAATATTGCAATTGTGTAGGAATATTGTAATATTGCAATTTTGTATGAATATTATATTGT
TTATAAATGAATGTTGT
Found at i:58562225 original size:38 final size:38
Alignment explanation
Indices: 58562180--58562253 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
58562170 CATATAAAGT
*
58562180 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCACTAAAAGTTTAA
* *
58562218 TTATAAAAAAATTAAAAATTATTTTACTAAAAGTTT
1 TTATAAAAAAATTAAAAATCATTTCACTAAAAGTTT
58562254 GGGTTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATCATTTCACTAAAAGTTTAA
Found at i:58562405 original size:15 final size:15
Alignment explanation
Indices: 58562364--58562405 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
58562354 GTTAACTTAT
*
58562364 TTAATTTTTATATAA
1 TTAAATTTTATATAA
*
58562379 TGTAACTTTTATATAA
1 T-TAAATTTTATATAA
58562395 TTAAATTTTAT
1 TTAAATTTTAT
58562406 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTATATAA
Found at i:58564037 original size:6 final size:6
Alignment explanation
Indices: 58564026--58564060 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
58564016 GCATCATGCA
*
58564026 CCAGAG CCAGAG CCAGGG CCAGAG CCAGAG CCAGA
1 CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG CCAGA
58564061 ACTACATTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.31, C:0.34, G:0.34, T:0.00
Consensus pattern (6 bp):
CCAGAG
Found at i:58567284 original size:19 final size:19
Alignment explanation
Indices: 58567262--58567604 Score: 119
Period size: 19 Copynumber: 18.5 Consensus size: 19
58567252 ATTGCAAAAT
*
58567262 TACAATATTACAATATTCA
1 TACAAAATTACAATATTCA
*
58567281 TACAAAAAAATTTCAATATTCA
1 TAC---AAAATTACAATATTCA
*
58567303 TACAAAATTATAATA-T--
1 TACAAAATTACAATATTCA
*
58567319 TACAACATT-C-ATA--CA
1 TACAAAATTACAATATTCA
* *
58567334 -A-AAAAATATAATATTCA
1 TACAAAATTACAATATTCA
*
58567351 TACAAAATTACAA-AAT--
1 TACAAAATTACAATATTCA
*
58567367 TACAATATT-C-ATA--CA
1 TACAAAATTACAATATTCA
* *
58567382 -AAAAAATTGCAATATTCA
1 TACAAAATTACAATATTCA
** *
58567400 TACAAAACCATAATATT-A
1 TACAAAATTACAATATTCA
*
58567418 TTACAATATT-C-ATA--CA
1 -TACAAAATTACAATATTCA
*
58567434 -A-AAAATTTATAATATTCA
1 TACAAAA-TTACAATATTCA
58567452 TACAAAATTACAATATTCA
1 TACAAAATTACAATATTCA
* *
58567471 TACAAAAAATTACTA-ATCCAA
1 TAC--AAAATTACAATATTC-A
*
58567492 AACTATAAA-TACAAATTTAATT-A
1 TAC-A-AAATTAC-AA--T-ATTCA
*
58567515 TAAAATAATTACAATATTCA
1 TACAA-AATTACAATATTCA
*
58567535 TACAACATTACAATATTCA
1 TACAAAATTACAATATTCA
* *
58567554 TAAAAAAATTATAATATTCA
1 T-ACAAAATTACAATATTCA
*
58567574 TACAAAAAATTTAAAATATTCA
1 TAC--AAAA-TTACAATATTCA
58567596 TACAAAATT
1 TACAAAATT
58567605 CTAATCTAAA
Statistics
Matches: 238, Mismatches: 42, Indels: 88
0.65 0.11 0.24
Matches are distributed among these distances:
13 7 0.03
14 14 0.06
15 6 0.03
16 23 0.10
17 5 0.02
18 9 0.04
19 73 0.31
20 37 0.16
21 21 0.09
22 36 0.15
23 5 0.02
25 2 0.01
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (19 bp):
TACAAAATTACAATATTCA
Found at i:58567310 original size:49 final size:49
Alignment explanation
Indices: 58567256--58567468 Score: 297
Period size: 49 Copynumber: 4.3 Consensus size: 49
58567246 ATAAAAATTG
58567256 CAAAATTACAATATTACAATATTCATACAAAAAAATTTCAATATTCATA
1 CAAAATTACAATATTACAATATTCATACAAAAAAATTTCAATATTCATA
* * *
58567305 CAAAATTATAATATTACAACATTCATACAAAAAAATAT-AATATTCATA
1 CAAAATTACAATATTACAATATTCATACAAAAAAATTTCAATATTCATA
* *
58567353 CAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATA
1 CAAAATTACAATATTACAATATTCATACAAAAAAATTTCAATATTCATA
* *
58567402 CAAAACCATA-ATATTATTACAATATTCATAC-AAAAAATTTATAATATTCATA
1 CAAAA--TTACA-A-TATTACAATATTCATACAAAAAAATTT-CAATATTCATA
58567454 CAAAATTACAATATT
1 CAAAATTACAATATT
58567469 CATACAAAAA
Statistics
Matches: 144, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
48 43 0.30
49 54 0.38
50 4 0.03
51 12 0.08
52 31 0.22
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (49 bp):
CAAAATTACAATATTACAATATTCATACAAAAAAATTTCAATATTCATA
Found at i:58567319 original size:41 final size:40
Alignment explanation
Indices: 58567262--58567609 Score: 97
Period size: 41 Copynumber: 8.3 Consensus size: 40
58567252 ATTGCAAAAT
* *
58567262 TACAATATTACAATATTCATACAAAAAAATTTCAATATTCA
1 TACAAAATTATAATATTCATAC-AAAAAATTTCAATATTCA
*
58567303 TACAAAATTATAATA-T--TAC--AACA-TTC-ATA--CA
1 TACAAAATTATAATATTCATACAAAAAATTTCAATATTCA
* *
58567334 -A-AAAAATATAATATTCATACAAAATTACAAAATTACAATATTCA
1 TACAAAATTATAATATTCATAC---A--A-AAAATTTCAATATTCA
**
58567378 TACAAAAAAATTGCAATATTCATACAAAACCATAATATTATTACAATATTCA
1 TAC---AAAATTATAATATTCATAC--AA--A-AA-A-T-TT-CAATATTCA
*
58567430 TACAAAAAATTTATAATATTCATAC--AAAATTACAATATTCA
1 TAC-AA-AA-TTATAATATTCATACAAAAAATTTCAATATTCA
**
58567471 TACAAAAAATTACTAATCCAAAACTATA-AATACAAATTT--A-ATT-A
1 TAC--AAAATTA-TAAT---ATTC-ATACAA-A-AAATTTCAATATTCA
* * * *
58567515 TAAAATAATTACAATATTCATAC--AACATTACAATATTCA
1 TACAA-AATTATAATATTCATACAAAAAATTTCAATATTCA
* *
58567554 TAAAAAAATTATAATATTCATACAAAAAATTTAAAATATTCA
1 T-ACAAAATTATAATATTCATACAAAAAATTT-CAATATTCA
*
58567596 TACAAAATTCTAAT
1 TACAAAATTATAAT
58567610 CTAAACTATA
Statistics
Matches: 231, Mismatches: 28, Indels: 96
0.65 0.08 0.27
Matches are distributed among these distances:
29 11 0.05
30 2 0.01
31 2 0.01
32 3 0.01
33 3 0.01
34 3 0.01
35 7 0.03
36 1 0.00
37 1 0.00
38 9 0.04
39 20 0.09
40 11 0.05
41 49 0.21
42 21 0.09
43 6 0.03
44 8 0.03
45 9 0.04
46 3 0.01
47 3 0.01
48 10 0.04
49 17 0.07
50 4 0.02
51 3 0.01
52 25 0.11
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.32
Consensus pattern (40 bp):
TACAAAATTATAATATTCATACAAAAAATTTCAATATTCA
Found at i:58567357 original size:97 final size:100
Alignment explanation
Indices: 58567256--58567468 Score: 342
Period size: 97 Copynumber: 2.1 Consensus size: 100
58567246 ATAAAAATTG
* *
58567256 CAAAATTACAATATTACAATATTCATACAAAAAAATTTCAATATTCATAC-AAA-ATTATAATAT
1 CAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAACATAATAATAT
58567319 TACAACATTCATACAAAAAA-ATATAATATTCATA
66 TACAACATTCATACAAAAAATATATAATATTCATA
* *
58567353 CAAAATTACAAAATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAACCATAATATTA
1 CAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAA-CATAATAATA
* *
58567418 TTACAATATTCATACAAAAAATTTATAATATTCATA
65 TTACAACATTCATACAAAAAATATATAATATTCATA
58567454 CAAAATTACAATATT
1 CAAAATTACAATATT
58567469 CATACAAAAA
Statistics
Matches: 105, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
97 48 0.46
98 3 0.03
100 27 0.26
101 27 0.26
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (100 bp):
CAAAATTACAATATTACAATATTCATACAAAAAAATTGCAATATTCATACAAAACATAATAATAT
TACAACATTCATACAAAAAATATATAATATTCATA
Found at i:58567447 original size:22 final size:21
Alignment explanation
Indices: 58567417--58567602 Score: 133
Period size: 22 Copynumber: 9.0 Consensus size: 21
58567407 CCATAATATT
*
58567417 ATTACAATATTCATACAAAAA
1 ATTATAATATTCATACAAAAA
58567438 ATTTATAATATTCATAC--AAA
1 A-TTATAATATTCATACAAAAA
*
58567458 ATTACAATATTCATACAAAAA
1 ATTATAATATTCATACAAAAA
**
58567479 ATTACTAATCCAAAACTATA-AATACAA
1 ATTA-TAAT---ATTC-ATACAA-A-AA
*
58567506 ATT-T-A-ATT-ATA-AAATA
1 ATTATAATATTCATACAAAAA
* *
58567522 ATTACAATATTCATAC--AAC
1 ATTATAATATTCATACAAAAA
*
58567541 ATTACAATATTCATA-AAAAA
1 ATTATAATATTCATACAAAAA
58567561 ATTATAATATTCATACAAAAA
1 ATTATAATATTCATACAAAAA
*
58567582 ATTTAAAATATTCATACAAAA
1 A-TTATAATATTCATACAAAA
58567603 TTCTAATCTA
Statistics
Matches: 132, Mismatches: 14, Indels: 37
0.72 0.08 0.20
Matches are distributed among these distances:
16 4 0.03
17 1 0.01
18 6 0.05
19 33 0.25
20 24 0.18
21 14 0.11
22 35 0.27
24 1 0.01
25 5 0.04
26 4 0.03
27 5 0.04
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTATAATATTCATACAAAAA
Found at i:58567603 original size:83 final size:84
Alignment explanation
Indices: 58567422--58567603 Score: 198
Period size: 83 Copynumber: 2.2 Consensus size: 84
58567412 ATATTATTAC
*
58567422 AATATTCATACAAAA-AATTTATAATATTCATACAAAATTACAATATTCATACAAAAAATTACTA
1 AATATTCATACAAAATAATTTACAATATTCATACAAAATTACAATATTCATACAAAAAATTACTA
* *
58567486 ATCCAAAACTATAAATACA
66 ATCCAAAACAAAAAATACA
* * *
58567505 AAT-TTAATTATAAAATAA-TTACAATATTCATACAACATTACAATATTCATA-AAAAAATTA-T
1 AATATTCA-TACAAAATAATTTACAATATTCATACAAAATTACAATATTCATACAAAAAATTACT
* *
58567566 AATATTC-ATACAAAAAATTTA-A
65 -A-ATCCAAAACAAAAAA--TACA
58567588 AATATTCATACAAAAT
1 AATATTCATACAAAAT
58567604 TCTAATCTAA
Statistics
Matches: 82, Mismatches: 10, Indels: 14
0.77 0.09 0.13
Matches are distributed among these distances:
81 1 0.01
82 20 0.24
83 54 0.66
84 7 0.09
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.32
Consensus pattern (84 bp):
AATATTCATACAAAATAATTTACAATATTCATACAAAATTACAATATTCATACAAAAAATTACTA
ATCCAAAACAAAAAATACA
Found at i:58567781 original size:3 final size:3
Alignment explanation
Indices: 58567773--58567805 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
58567763 TTTATAAACT
*
58567773 TTC TTC TTC TTC TTC TTC TTC TTC TTC TCC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
58567806 ACCTCTTCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:58567999 original size:5 final size:5
Alignment explanation
Indices: 58567989--58568026 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
58567979 GATAGGCGCC
*
58567989 ACCCG ACCCG ACCCG ACCCG ACCTG ACCCG ACCCG ACC
1 ACCCG ACCCG ACCCG ACCCG ACCCG ACCCG ACCCG ACC
58568027 GTATTTTGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.21, C:0.58, G:0.18, T:0.03
Consensus pattern (5 bp):
ACCCG
Found at i:58572648 original size:41 final size:41
Alignment explanation
Indices: 58572591--58572719 Score: 204
Period size: 41 Copynumber: 3.1 Consensus size: 41
58572581 ATCTTATGTG
58572591 ATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTA
1 ATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTA
* * *
58572632 ATCTGAATTAGGTTATAAACCTAGCAGACTAAGTGCCGGTG
1 ATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTA
* *
58572673 ATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGA
1 ATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGT-A
58572715 ATCTG
1 ATCTG
58572720 TTAAATTAAG
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 74 0.94
42 5 0.06
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (41 bp):
ATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTA
Found at i:58585785 original size:18 final size:18
Alignment explanation
Indices: 58585762--58585797 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
58585752 GAGAAAAATA
58585762 AATAAAATCATTAAGATC
1 AATAAAATCATTAAGATC
58585780 AATAAAATCATTAAGATC
1 AATAAAATCATTAAGATC
58585798 TTCAATGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.06, T:0.28
Consensus pattern (18 bp):
AATAAAATCATTAAGATC
Found at i:58597893 original size:14 final size:14
Alignment explanation
Indices: 58597872--58597905 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
58597862 TATTTAGTAG
58597872 TATAAATTTT-AAT
1 TATAAATTTTAAAT
58597885 TATACAATTTTAAAT
1 TATA-AATTTTAAAT
58597900 TATAAA
1 TATAAA
58597906 AATTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.21
14 8 0.42
15 7 0.37
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
TATAAATTTTAAAT
Found at i:58598799 original size:44 final size:47
Alignment explanation
Indices: 58598735--58598825 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 47
58598725 GCACTAATGG
58598735 ACAGAGAGCACTAAAGTGCTA-T-A-CAGAGAGCA-CAGACGTGCTAA
1 ACAGAGAGCACTAAAGTGCTAGTAATCAGAGAGCACCA-ACGTGCTAA
* *
58598779 ACAGAGAGCACTGACA-TGCTAGTAATCAGAGAGTACCAACGTGCTAA
1 ACAGAGAGCACT-AAAGTGCTAGTAATCAGAGAGCACCAACGTGCTAA
58598826 TAATCAGAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
44 17 0.43
45 3 0.08
46 1 0.03
47 17 0.43
48 2 0.05
ACGTcount: A:0.40, C:0.21, G:0.24, T:0.15
Consensus pattern (47 bp):
ACAGAGAGCACTAAAGTGCTAGTAATCAGAGAGCACCAACGTGCTAA
Found at i:58598811 original size:25 final size:24
Alignment explanation
Indices: 58598736--58598835 Score: 86
Period size: 22 Copynumber: 4.2 Consensus size: 24
58598726 CACTAATGGA
*
58598736 CAGAGAGCACTA-AAGTGCTAT-A-
1 CAGAGAGCAC-AGACGTGCTATAAT
58598758 CAGAGAGCACAGACGTGCTA-AA-
1 CAGAGAGCACAGACGTGCTATAAT
* *
58598780 CAGAGAGCACTGACATGCTAGTAAT
1 CAGAGAGCACAGACGTGCTA-TAAT
*
58598805 CAGAGAGTACCA-ACGTGCTAATAAT
1 CAGAGAGCA-CAGACGTGCT-ATAAT
58598830 CAGAGA
1 CAGAGA
58598836 ACGCGCTAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
21 1 0.02
22 36 0.55
24 2 0.03
25 24 0.37
26 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (24 bp):
CAGAGAGCACAGACGTGCTATAAT
Found at i:58599810 original size:5 final size:5
Alignment explanation
Indices: 58599800--58599843 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
58599790 TTATTTCTTT
58599800 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
58599844 TAACTTAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:58601820 original size:142 final size:142
Alignment explanation
Indices: 58601573--58601828 Score: 386
Period size: 142 Copynumber: 1.8 Consensus size: 142
58601563 TCTCTTAGCT
* * * * *
58601573 CTACTGTCATTAATGATATTATCCTGAAGAGAGAGATATTAGGAGGACCAAATCCTCTTCACAAT
1 CTACTGTCATTAATGATATCATCATAAAGAGAGAGATACTAAGAGGACCAAATCCTCTTCACAAT
* * * * *
58601638 TTTCCTCTCAGTCCTATTGACATTAATGATATCATTGTGAAGAGAGAAACACCCTCTTCATGATT
66 TCTCATCTCAATCCTATTGACATTAATGATATCATCGTGAAAAGAGAAACACCCTCTTCATGATT
58601703 CTTCTCTCAGTC
131 CTTCTCTCAGTC
*
58601715 CTACTGTCATTAATGATATCATCATAAAGAGAGAGATACTAAGAGGACCAAATCCTCTTGACAAT
1 CTACTGTCATTAATGATATCATCATAAAGAGAGAGATACTAAGAGGACCAAATCCTCTTCACAAT
* * *
58601780 TCTCATCTCAATTCTATTGTCATTAATGATGTCATCGTGAAAAGAGAAA
66 TCTCATCTCAATCCTATTGACATTAATGATATCATCGTGAAAAGAGAAA
58601829 TAGAAGAAGG
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
142 100 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.32
Consensus pattern (142 bp):
CTACTGTCATTAATGATATCATCATAAAGAGAGAGATACTAAGAGGACCAAATCCTCTTCACAAT
TCTCATCTCAATCCTATTGACATTAATGATATCATCGTGAAAAGAGAAACACCCTCTTCATGATT
CTTCTCTCAGTC
Found at i:58605690 original size:21 final size:20
Alignment explanation
Indices: 58605664--58605702 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
58605654 GATTAAATAT
*
58605664 ATATAAATTTTAGAAAAAAAC
1 ATATAAATTATA-AAAAAAAC
58605685 ATATAAATTATAAAAAAA
1 ATATAAATTATAAAAAAA
58605703 TATAGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (20 bp):
ATATAAATTATAAAAAAAAC
Found at i:58606134 original size:8 final size:8
Alignment explanation
Indices: 58606121--58606171 Score: 56
Period size: 8 Copynumber: 6.9 Consensus size: 8
58606111 TAAAAGTATT
58606121 TTTTAATA
1 TTTTAATA
58606129 TTTTAATA
1 TTTTAATA
*
58606137 -TTTCATA
1 TTTTAATA
*
58606144 TTATAAT-
1 TTTTAATA
58606151 TTTT--TA
1 TTTTAATA
58606157 TTTTAATA
1 TTTTAATA
58606165 TTTTAAT
1 TTTTAAT
58606172 TTTAAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
5 1 0.03
6 4 0.11
7 9 0.26
8 21 0.60
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (8 bp):
TTTTAATA
Found at i:58606150 original size:15 final size:14
Alignment explanation
Indices: 58606126--58606176 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
58606116 GTATTTTTTA
58606126 ATATTTTAATATTT
1 ATATTTTAATATTT
*
58606140 CATATTATAAT-TTT
1 -ATATTTTAATATTT
*
58606154 TTATTTTAATATTT
1 ATATTTTAATATTT
58606168 -TAATTTTAA
1 AT-ATTTTAA
58606177 ATAAACTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 9 0.29
14 13 0.42
15 9 0.29
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (14 bp):
ATATTTTAATATTT
Found at i:58606152 original size:21 final size:22
Alignment explanation
Indices: 58606128--58606176 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
58606118 ATTTTTTAAT
*
58606128 ATTTTAATA-TTTCATATTATA
1 ATTTTAATATTTTAATATTATA
* *
58606149 ATTTT-TTATTTTAATATTTTA
1 ATTTTAATATTTTAATATTATA
58606170 ATTTTAA
1 ATTTTAA
58606177 ATAAACTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTTAATATTTTAATATTATA
Found at i:58610256 original size:6 final size:6
Alignment explanation
Indices: 58610245--58610279 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
58610235 ACAATATTTT
*
58610245 TTAAAA TTAAAA TTAAAA TGAAAA TTAAATA TTAA
1 TTAAAA TTAAAA TTAAAA TTAAAA TTAAA-A TTAA
58610280 TTTAATTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (6 bp):
TTAAAA
Found at i:58618563 original size:3 final size:3
Alignment explanation
Indices: 58618555--58618584 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
58618545 ATTAATCTTG
*
58618555 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
58618585 ACCTTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:58618704 original size:26 final size:26
Alignment explanation
Indices: 58618664--58618715 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
58618654 ACATAGATAT
**
58618664 TTTTTTTATTTTTATAATTTTATTTA
1 TTTTTTTATAATTATAATTTTATTTA
**
58618690 TTTTTTTATAATTATTGTTTTATTTA
1 TTTTTTTATAATTATAATTTTATTTA
58618716 ATATTTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (26 bp):
TTTTTTTATAATTATAATTTTATTTA
Found at i:58620421 original size:29 final size:28
Alignment explanation
Indices: 58620382--58620439 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 28
58620372 AATAAACACT
*
58620382 AAAAATTTATTTTAAAAATAAAAAAATAA
1 AAAAATGTATTTTAAAAAT-AAAAAATAA
58620411 AAAAATGTATTTTAAAAATAAAAAATAA
1 AAAAATGTATTTTAAAAATAAAAAATAA
58620439 A
1 A
58620440 TATTTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 10 0.36
29 18 0.64
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAAATGTATTTTAAAAATAAAAAATAA
Found at i:58620445 original size:21 final size:21
Alignment explanation
Indices: 58620403--58620444 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
58620393 TTAAAAATAA
**
58620403 AAAAATAAAAAAATGTATTTT
1 AAAAATAAAAAAAAATATTTT
58620424 AAAAATAAAAAATAAATATTT
1 AAAAATAAAAAA-AAATATTT
58620445 ATTATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAAATAAAAAAAAATATTTT
Found at i:58623148 original size:14 final size:15
Alignment explanation
Indices: 58623115--58623166 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
58623105 TATTATTTTC
*
58623115 CTATTATTTATTATA
1 CTATTATTTATTACA
*
58623130 CTATT-TTTTTTACA
1 CTATTATTTATTACA
*
58623144 CTATTATTTATTATA
1 CTATTATTTATTACA
58623159 CTTATTAT
1 C-TATTAT
58623167 ATCATTTTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
14 12 0.39
15 13 0.42
16 6 0.19
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (15 bp):
CTATTATTTATTACA
Found at i:58629414 original size:42 final size:42
Alignment explanation
Indices: 58629367--58629500 Score: 105
Period size: 42 Copynumber: 3.1 Consensus size: 42
58629357 GTTATCAGAT
58629367 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
58629409 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
58629453 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
58629495 CTTGCC
1 CTTGCC
58629501 ACTCTCGTTT
Statistics
Matches: 64, Mismatches: 18, Indels: 20
0.63 0.18 0.20
Matches are distributed among these distances:
40 1 0.02
41 13 0.20
42 20 0.31
43 2 0.03
44 14 0.22
45 13 0.20
46 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (42 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
Found at i:58629442 original size:86 final size:86
Alignment explanation
Indices: 58629313--58629576 Score: 411
Period size: 86 Copynumber: 3.1 Consensus size: 86
58629303 AGTAAAAATT
* * * * * *
58629313 GAAGATAAACATTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
58629378 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* *
58629399 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
58629464 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* *
58629485 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
* *
58629550 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
58629572 GAAGA
1 GAAGA
58629577 TGGCAGATTT
Statistics
Matches: 163, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
86 141 0.87
87 22 0.13
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:58629530 original size:41 final size:41
Alignment explanation
Indices: 58629399--58629530 Score: 99
Period size: 41 Copynumber: 3.1 Consensus size: 41
58629389 GAAGCAGATC
*
58629399 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTT
* * * * * * * *
58629440 GAAGATAGCAGATCTTGCC-TTC-CTGCATTGACAGC-GAAGCAGATC
1 GAAG--A-CAAACCTTGCCACTCTC-G-TTTG-TAGCAG-AGCTGGTT
58629485 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTT
58629526 GAAGA
1 GAAGA
58629531 TATCAGATCT
Statistics
Matches: 64, Mismatches: 17, Indels: 20
0.63 0.17 0.20
Matches are distributed among these distances:
41 17 0.27
42 14 0.22
43 8 0.12
44 14 0.22
45 11 0.17
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (41 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTT
Found at i:58629765 original size:134 final size:134
Alignment explanation
Indices: 58629524--58629799 Score: 482
Period size: 134 Copynumber: 2.1 Consensus size: 134
58629514 GCAGAGCTGG
* * *
58629524 TTGAAGATATCAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATATCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
*
58629589 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
58629654 TAGA
131 TAGA
58629658 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
1 TTGAAGATAT-CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
* *
58629722 ACCTCCCTGGCCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGA
65 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGA
58629787 ATAGA
130 ATAGA
58629792 TTGAAGAT
1 TTGAAGAT
58629800 CAAAGATGGC
Statistics
Matches: 135, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
133 1 0.01
134 134 0.99
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (134 bp):
TTGAAGATATCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
TAGA
Found at i:58629786 original size:45 final size:45
Alignment explanation
Indices: 58629735--58629987 Score: 149
Period size: 45 Copynumber: 5.4 Consensus size: 45
58629725 TCCCTGGCCA
*
58629735 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * ***
58629780 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG-A--CCA
1 CAGTGGAATACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGTATTTGG
*
58629830 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * * *
58629875 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAATACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGTATTTGG
*
58629925 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
*
58629970 CAGTGGAATAGATTGAAG
1 CAGTGGAATACATTGAAG
58629988 ATTGCAGATC
Statistics
Matches: 150, Mismatches: 36, Indels: 44
0.65 0.16 0.19
Matches are distributed among these distances:
42 22 0.15
43 4 0.03
44 1 0.01
45 48 0.32
46 6 0.04
47 2 0.01
48 2 0.01
49 6 0.04
50 32 0.21
51 1 0.01
52 4 0.03
53 22 0.15
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (45 bp):
CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
Found at i:58629814 original size:95 final size:95
Alignment explanation
Indices: 58629701--58629989 Score: 560
Period size: 95 Copynumber: 3.0 Consensus size: 95
58629691 GCAGCGAAGC
*
58629701 AGATCAAAGATGGCAGATTTTACCTCCCTGGCCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
58629766 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
58629796 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
58629861 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
*
58629891 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
58629956 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
58629986 AGAT
1 AGAT
58629990 TGCAGATCTT
Statistics
Matches: 192, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 192 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:58629845 original size:50 final size:50
Alignment explanation
Indices: 58629780--58629942 Score: 135
Period size: 50 Copynumber: 3.4 Consensus size: 50
58629770 CTGTATTTGG
*
58629780 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACCA
1 CAGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACCA
* * * * * ***
58629830 CAGTGGAGTACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG-A--CCA
* *
58629875 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
1 CAGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACCA
*
58629925 CAGTGGAGTACATTGAAG
1 CAGTGGAATACATTGAAG
58629943 CCGATAACTC
Statistics
Matches: 82, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
42 11 0.13
43 2 0.02
45 16 0.20
46 3 0.04
47 1 0.01
48 1 0.01
49 3 0.04
50 32 0.39
52 2 0.02
53 11 0.13
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (50 bp):
CAGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACCA
Found at i:58630156 original size:44 final size:45
Alignment explanation
Indices: 58630102--58630898 Score: 646
Period size: 44 Copynumber: 18.1 Consensus size: 45
58630092 CCCGGGGCAA
* * *
58630102 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
58630146 GAAGTGGATCGACGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * * *
58630190 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * *
58630234 GAAGTAGATCGAAGATGGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
58630278 GAAGTGGATCCAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
** * * * * *
58630322 GAAGTAGATCGCTGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * *
58630366 GAAGTAGATCGAAGATGGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
58630410 GAAGTGGATCCAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
** * * * * * *
58630454 GAAGTAGATCGCTGAAAGCAGGTCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
58630498 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATTATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTA-TATTGGTAGC
* * * * * *
58630543 GAAGTGGATCCAAGATA-TAGATCTTGTCTTCCCATACTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * * *
58630587 GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* *
58630631 GAAATAGATCGAAGAT-GCAAAT-TCTGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCT-TGTCTTCCTATATTGGTAGC
* * * * * *
58630674 GAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTATTGGCA-T
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * *
58630718 GAAGTAGATCAAAGATAACAGGT-TCGGTCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCT-TGTCTTCCTATATTGGTAGC
* * *
58630762 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * * * * *
58630806 GAAGTAGATCGAAGAAAGCAGGTCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
* * *
58630850 GAAGTAGATCGAAGATAGCAGATCCTGCCTTCCTATATTTGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
58630894 GAAGT
1 GAAGT
58630899 GGATTGAAAA
Statistics
Matches: 580, Mismatches: 150, Indels: 46
0.75 0.19 0.06
Matches are distributed among these distances:
42 1 0.00
43 123 0.21
44 332 0.57
45 123 0.21
46 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (45 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGTAGC
Found at i:58630339 original size:132 final size:132
Alignment explanation
Indices: 58630102--58630701 Score: 959
Period size: 132 Copynumber: 4.5 Consensus size: 132
58630092 CCCGGGGCAA
* * * * *
58630102 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
58630167 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
58630232 GT
131 GT
*
58630234 GAAGTAGATCGAAGATGGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
*
58630299 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCTGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
58630364 GT
131 GT
*
58630366 GAAGTAGATCGAAGATGGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
* *
58630431 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCTGAAAGCAGGTCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
58630496 GT
131 GT
**
58630498 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATTATTGATAGGAAGTGGATCCAAGATATAG
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA-TATTGATAGGAAGTGGATCCAAGATGCAG
* * *
58630563 ATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG
65 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG
58630628 CGT
130 CGT
* ** * * * * * *
58630631 GAAATAGATCGAAGAT-GCAAATTCTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAG
1 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAG-ATGCAG
58630695 ATCTTGT
65 ATCTTGT
58630702 ATTCATGTAT
Statistics
Matches: 439, Mismatches: 27, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
131 20 0.05
132 314 0.72
133 105 0.24
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:58633204 original size:14 final size:14
Alignment explanation
Indices: 58633185--58633211 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58633175 TAATGTTACT
58633185 ATTTTTTTATTATC
1 ATTTTTTTATTATC
58633199 ATTTTTTTATTAT
1 ATTTTTTTATTAT
58633212 TTTCCTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (14 bp):
ATTTTTTTATTATC
Found at i:58633264 original size:16 final size:15
Alignment explanation
Indices: 58633216--58633266 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
58633206 TATTATTTTC
58633216 CTATTATTTATTATA
1 CTATTATTTATTATA
*
58633231 CTATT-TTT-TTACA
1 CTATTATTTATTATA
58633244 CTATTATTTATTATA
1 CTATTATTTATTATA
58633259 CTTATTAT
1 C-TATTAT
58633267 ATCATTTTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 9 0.29
14 6 0.19
15 10 0.32
16 6 0.19
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (15 bp):
CTATTATTTATTATA
Found at i:58636427 original size:24 final size:24
Alignment explanation
Indices: 58636400--58636446 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
58636390 AATAAAATGG
*
58636400 GTGTAGCTAGTCTATATTGGTTAC
1 GTGTAGCTAGTCTACATTGGTTAC
58636424 GTGTAGCTAGTCTACATTGGTTA
1 GTGTAGCTAGTCTACATTGGTTA
58636447 TCTTTCGACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (24 bp):
GTGTAGCTAGTCTACATTGGTTAC
Found at i:58639678 original size:20 final size:19
Alignment explanation
Indices: 58639646--58639690 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
58639636 TCACTTAAAT
*
58639646 AAATAATTTAAAATTTATAA
1 AAAT-ATTTAAAAATTATAA
*
58639666 AAATATTTAAAAAATTATTA
1 AAATATTT-AAAAATTATAA
58639686 AAATA
1 AAATA
58639691 AAATAATAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATATTTAAAAATTATAA
Found at i:58645985 original size:2 final size:2
Alignment explanation
Indices: 58645978--58646007 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
58645968 GATACTTGTG
58645978 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
58646008 TATTAATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:58652155 original size:20 final size:19
Alignment explanation
Indices: 58652095--58652155 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 19
58652085 ATCAACAAAT
* *
58652095 AATTTAAAAATTATAAAAC
1 AATTCAAAAATTATAAAAA
* *
58652114 TATTCAAAAA-AATAAGAAAA
1 AATTCAAAAATTAT-A-AAAA
58652134 AATTCAAAAATTATAAAGAA
1 AATTCAAAAATTATAAA-AA
58652154 AA
1 AA
58652156 ATAACATAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
18 2 0.06
19 11 0.34
20 17 0.53
21 2 0.06
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.25
Consensus pattern (19 bp):
AATTCAAAAATTATAAAAA
Found at i:58652416 original size:18 final size:18
Alignment explanation
Indices: 58652393--58652427 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
58652383 AAATGTAATT
58652393 TATCAAATAAACTTTAAG
1 TATCAAATAAACTTTAAG
* *
58652411 TATCAAGTAATCTTTAA
1 TATCAAATAAACTTTAA
58652428 CCAAGAGAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (18 bp):
TATCAAATAAACTTTAAG
Found at i:58658812 original size:14 final size:14
Alignment explanation
Indices: 58658793--58658820 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
58658783 TCCCTTCCTT
58658793 CCTTCTACCTTCTG
1 CCTTCTACCTTCTG
58658807 CCTTCTACCTTCTG
1 CCTTCTACCTTCTG
58658821 TCGATTTGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.43, G:0.07, T:0.43
Consensus pattern (14 bp):
CCTTCTACCTTCTG
Found at i:58658875 original size:5 final size:5
Alignment explanation
Indices: 58658865--58658891 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
58658855 GCTCCATCTG
58658865 TTTCT TTTCT TTTCT TTTCT TTTCT TT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TT
58658892 CGATTTGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTCT
Found at i:58659526 original size:17 final size:16
Alignment explanation
Indices: 58659506--58659537 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
58659496 CCGTTTTCAT
58659506 TTTCTTTTACTTTTATA
1 TTTCTTTTA-TTTTATA
58659523 TTTCTTTTATTTTAT
1 TTTCTTTTATTTTAT
58659538 TCATTTAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTCTTTTATTTTATA
Found at i:58662293 original size:15 final size:17
Alignment explanation
Indices: 58662258--58662291 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
58662248 AATCATAAGA
58662258 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
58662275 ATTTTTTTAAATTATAT
1 ATTTTATTAAATTATAT
58662292 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:58662399 original size:18 final size:17
Alignment explanation
Indices: 58662377--58662511 Score: 86
Period size: 18 Copynumber: 8.0 Consensus size: 17
58662367 AATACTAAAA
58662377 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
58662394 ATTTTTGTTAAA-T-TAT
1 A-TTTTATTAAATTATAT
* *
58662410 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* * *
58662424 ATTTTAAATCATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
58662443 AATATTA-TATATTATA-
1 -ATTTTATTAAATTATAT
*
58662459 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
58662477 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
58662494 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
58662512 TTAATAATAA
Statistics
Matches: 90, Mismatches: 15, Indels: 25
0.69 0.12 0.19
Matches are distributed among these distances:
13 2 0.02
14 6 0.07
15 9 0.10
16 9 0.10
17 18 0.20
18 41 0.46
19 1 0.01
20 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:58662425 original size:120 final size:119
Alignment explanation
Indices: 58662257--58662477 Score: 406
Period size: 120 Copynumber: 1.8 Consensus size: 119
58662247 CAATCATAAG
*
58662257 AATTTTATTAAATTATATATTTTTTTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 AATTTTATTAAATTATATATTTTTTTAAATTATATTTAATAATAATTATTTTAAATCATATTTTA
* *
58662322 TAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATACTAAA
66 TAATATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATACTAAA
58662376 AATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATCATATTTT
1 AATTTTATTAAATTATATATTTTT-TTAAATTATATTTAATAATAATTATTTTAAATCATATTTT
58662441 ATAATATTATATATTATAATTTTAGTAAATTCATATA
65 ATAATATTATATATTATAATTTTAGTAAATTCATATA
58662478 TTTTATTAAA
Statistics
Matches: 98, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
119 24 0.24
120 74 0.76
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.53
Consensus pattern (119 bp):
AATTTTATTAAATTATATATTTTTTTAAATTATATTTAATAATAATTATTTTAAATCATATTTTA
TAATATTATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATACTAAA
Found at i:58662430 original size:26 final size:25
Alignment explanation
Indices: 58662392--58662450 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
58662382 ATTAAATTAT
* *
58662392 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATCATATTTAATA
*
58662418 ATAATTATTTTAAATCATATTTTATA
1 AT-ATTATTTTAAATCATATTTAATA
58662444 ATATTAT
1 ATATTAT
58662451 ATATTATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 5 0.17
26 19 0.66
27 5 0.17
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (25 bp):
ATATTATTTTAAATCATATTTAATA
Found at i:58662479 original size:41 final size:41
Alignment explanation
Indices: 58662313--58662496 Score: 122
Period size: 41 Copynumber: 4.6 Consensus size: 41
58662303 TATTTTAAAT
* *
58662313 TATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
1 TATATTTTATAATATTATATATTATAATTTTAGTAAATTCA
* * * *
58662354 TATA----AGAATATT-TAATACTAAAAATTTTATTAAATT-A
1 TATATTTTATAATATTAT-ATA-TTATAATTTTAGTAAATTCA
* **
58662391 TATATTTTTGTTAA-ATTATAT-TTAATAATAATTATTTTAAA-TC-
1 TATA-TTTT-ATAATATTATATATT-ATAAT--TT-TAGTAAATTCA
58662434 -ATATTTTATAATATTATATATTATAATTTTAGTAAATTCA
1 TATATTTTATAATATTATATATTATAATTTTAGTAAATTCA
58662474 TATATTTTATTAA-ATTATATATT
1 TATATTTTA-TAATATTATATATT
58662497 TTTATTAAAT
Statistics
Matches: 109, Mismatches: 14, Indels: 40
0.67 0.09 0.25
Matches are distributed among these distances:
36 1 0.01
37 14 0.13
38 19 0.17
39 4 0.04
40 4 0.04
41 42 0.39
42 13 0.12
43 6 0.06
44 6 0.06
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (41 bp):
TATATTTTATAATATTATATATTATAATTTTAGTAAATTCA
Found at i:58665878 original size:111 final size:110
Alignment explanation
Indices: 58665725--58666245 Score: 636
Period size: 109 Copynumber: 4.7 Consensus size: 110
58665715 TACGAAAGAA
* * **
58665725 AAAAAACAAAAAAAAAAATTTTTTTGGTGCTGGCCTGTCAATGGCCGGCACCCAGTGTACAGTAC
1 AAAAAA-ATAAAAAAAAA--TTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAC
***** * * *
58665790 CAAAATTTTTTTTTGTTTTTTTTTGTGTCAGAATCAGATTTAAAAATACG
63 CAAAA-AAAAATTTATTTTTTTTCGTGTCAGAATCAGA-TAAAAAATACG
***** *
58665840 AAAAAAAT-AAATTTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACGAA
1 AAAAAAATAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAC-CA
*
58665904 GAAAAAAAATTTTTTATTTTTTTCGTGTCAGAATCAGATTAAAAAAATACG
65 -AAAAAAAA-TTTAT-TTTTTTTCGTGTCAGAATCAGA-T-AAAAAATACG
*
58665955 AAAAAAATAAAAAAAAATTTTGGGTGCTGGCCTGTTAATGGCCGGCACCCAGTACACAGTA-CAA
1 AAAAAAATAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACCAA
*
58666019 AAAAAAATTTATTTTTTTTCGTGTAAGAATCAGATAAAAAATACG
66 AAAAAAATTTATTTTTTTTCGTGTCAGAATCAGATAAAAAATACG
* * * * * *
58666064 AAAAAATTAAAAAAAAAATTTAGGTGCTCGCCTGTCAATGGCCGGCACCCAGTGCACAGTA-CGA
1 AAAAAAATAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACCAA
58666128 AAAAAAATTTATTTTTTTTCGTGTCAGAATCAGATAAAAAATACG
66 AAAAAAATTTATTTTTTTTCGTGTCAGAATCAGATAAAAAATACG
* *
58666173 AAAAAAA-ATAAAAAAAATTTTGAGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACGA
1 AAAAAAATA-AAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACCA
58666237 AGAAAAAAA
65 A-AAAAAAA
58666246 AATTTAAATT
Statistics
Matches: 354, Mismatches: 43, Indels: 22
0.84 0.10 0.05
Matches are distributed among these distances:
108 1 0.00
109 164 0.46
110 2 0.01
111 70 0.20
112 5 0.01
113 18 0.05
114 25 0.07
115 23 0.06
116 46 0.13
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (110 bp):
AAAAAAATAAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACCAA
AAAAAAATTTATTTTTTTTCGTGTCAGAATCAGATAAAAAATACG
Found at i:58666361 original size:115 final size:116
Alignment explanation
Indices: 58666256--58666605 Score: 530
Period size: 115 Copynumber: 3.0 Consensus size: 116
58666246 AATTTAAATT
* *
58666256 TTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAA-TAAAAAATTTTTTTCTTCGTAC
1 TTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATTAAAAAA-ATATTTCTTCGTAC
58666320 TGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCC-AAAAATTTTTTTTA
65 TGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTA
* *
58666371 TTTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAAATTTTAAAAAAAAAATT-TTCGTA
1 TTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAA--TTAAAAAAATATTTCTTCGTA
* *
58666434 CTGTGTACTGGGTGCAGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTTTA
64 CTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAA--ATTTTTTTTA
58666489 TTTTTTTGCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATTAAAAAAAAATATTTCTTCGT
1 TTTTTTT-CGTATTTTTTTATCTGATTCTGACACGAAAAAAAATT--AAAAAAATATTTCTTCGT
*
58666554 ACTGTGTACTGGGTGCCGGCCATTGACAGGTCAGCACCC-AAAAATTTTTTTT
63 ACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTT
58666606 CGTATTTTTA
Statistics
Matches: 213, Mismatches: 11, Indels: 19
0.88 0.05 0.08
Matches are distributed among these distances:
114 30 0.14
115 54 0.25
116 6 0.03
117 7 0.03
118 26 0.12
119 4 0.02
120 44 0.21
121 42 0.20
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (116 bp):
TTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATTAAAAAAATATTTCTTCGTACT
GTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAAATTTTTTTTA
Found at i:58666576 original size:121 final size:120
Alignment explanation
Indices: 58666256--58666614 Score: 565
Period size: 121 Copynumber: 3.0 Consensus size: 120
58666246 AATTTAAATT
** *
58666256 TTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAA-T-AAAAAATTTTTTTCTTCGTA
1 TTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATTAAAAAAAAATATTTCTTCGTA
58666319 CTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAA---TTTTTTTTA
66 CTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTTTA
58666371 TTTTTTTCGTA-TTTTTTATCTGATTCTGACACGAAAAAAAATTTTAAAAAAAAA-A-TT-TTCG
1 TTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAA--TTAAAAAAAAATATTTCTTCG
*
58666432 TACTGTGTACTGGGTGCAGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTTTA
64 TACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTTTA
58666489 TTTTTTTGCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATTAAAAAAAAATATTTCTTCGT
1 TTTTTTT-CGTATTTTTTTATCTGATTCTGACACGAAAAAAAATTAAAAAAAAATATTTCTTCGT
* **
58666554 ACTGTGTACTGGGTGCCGGCCATTGACAGGTCAGCACCCAAAAATTTTTTTTCGTA
65 ACTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTTTA
58666610 TTTTT
1 TTTTT
58666615 AAATCTAATT
Statistics
Matches: 224, Mismatches: 8, Indels: 18
0.90 0.03 0.07
Matches are distributed among these distances:
114 30 0.13
115 59 0.26
116 2 0.01
117 1 0.00
118 33 0.15
119 5 0.02
120 32 0.14
121 62 0.28
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (120 bp):
TTTTTTTCGTATTTTTTTATCTGATTCTGACACGAAAAAAAATTAAAAAAAAATATTTCTTCGTA
CTGTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTTTA
Found at i:58669792 original size:77 final size:77
Alignment explanation
Indices: 58669651--58669806 Score: 183
Period size: 77 Copynumber: 2.0 Consensus size: 77
58669641 GCTTATTTTA
* * *
58669651 ATTGTTATCTTTGTAGTTGCCTCGGACCAACGGCAACTTTTCACCTTATTTTTTTCAAGG-TTTT
1 ATTGTTATCTTTCTAGTTGCCTCAGACCAACGGCAACTTTT-ACCTTATTTCTTTCAAGGTTTTT
58669715 TAGAGGTTTTCTC
65 TAGAGGTTTTCTC
* * * *
58669728 ATTGTTATCTTTCTAGTTGCCTTAGATCAACGTCAAACTTTT-CGTT-TCTTCTTTCAAGGTTTT
1 ATTGTTATCTTTCTAGTTGCCTCAGACCAACGGC-AACTTTTACCTTAT-TTCTTTCAAGG--TT
58669791 TTTTAGAGGTTTTCTC
62 TTTTAGAGGTTTTCTC
58669807 TAATCTCGAT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
75 1 0.01
76 13 0.19
77 29 0.43
78 7 0.10
79 17 0.25
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (77 bp):
ATTGTTATCTTTCTAGTTGCCTCAGACCAACGGCAACTTTTACCTTATTTCTTTCAAGGTTTTTT
AGAGGTTTTCTC
Found at i:58679410 original size:13 final size:14
Alignment explanation
Indices: 58679392--58679420 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
58679382 ATATAGTAAT
58679392 ATATT-ATTAAATG
1 ATATTAATTAAATG
58679405 ATATTAATTAAATG
1 ATATTAATTAAATG
58679419 AT
1 AT
58679421 TAATATCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (14 bp):
ATATTAATTAAATG
Found at i:58682051 original size:31 final size:30
Alignment explanation
Indices: 58681988--58682062 Score: 96
Period size: 31 Copynumber: 2.5 Consensus size: 30
58681978 TATAAGTTAA
* ** *
58681988 GTACCAACTAGGTACTAAAAAAAAGTTTAG
1 GTACCAACTAAGTAAAAAAAAAAAGTTCAG
*
58682018 GTATCAACTAAGTAAAAAAAAGAAAGTTCAG
1 GTACCAACTAAGTAAAAAAAA-AAAGTTCAG
58682049 GTACCAACTAAGTA
1 GTACCAACTAAGTA
58682063 CTTTTAGACA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
30 17 0.45
31 21 0.55
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.21
Consensus pattern (30 bp):
GTACCAACTAAGTAAAAAAAAAAAGTTCAG
Found at i:58692843 original size:12 final size:12
Alignment explanation
Indices: 58692826--58692850 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
58692816 GGCTTAGGCT
58692826 TCCTGCCTAATC
1 TCCTGCCTAATC
58692838 TCCTGCCTAATC
1 TCCTGCCTAATC
58692850 T
1 T
58692851 TTTCTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.40, G:0.08, T:0.36
Consensus pattern (12 bp):
TCCTGCCTAATC
Found at i:58709831 original size:30 final size:30
Alignment explanation
Indices: 58709776--58709854 Score: 117
Period size: 30 Copynumber: 2.7 Consensus size: 30
58709766 GTTGATGTGA
*
58709776 AGAGCTTAATTAATTTTCT--TTATTTTAGG
1 AGAGCTTAATTGATTTT-TAATTATTTTAGG
*
58709805 AGGGCTTAATTGATTTTTAATTATTTTAGG
1 AGAGCTTAATTGATTTTTAATTATTTTAGG
58709835 AGAGCTTAATTGATTTTTAA
1 AGAGCTTAATTGATTTTTAA
58709855 GGATTATATG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 1 0.02
29 15 0.33
30 29 0.64
ACGTcount: A:0.29, C:0.05, G:0.16, T:0.49
Consensus pattern (30 bp):
AGAGCTTAATTGATTTTTAATTATTTTAGG
Found at i:58710160 original size:30 final size:30
Alignment explanation
Indices: 58710114--58710186 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
58710104 AAATAATGAT
*
58710114 AAAA-AATTAGAAATGATAGAAAAT-TATATA
1 AAAATAATTA-AAATGATAAAAAATCTATA-A
58710144 AAAATAATTAAAATGATAAAAAATCTATAA
1 AAAATAATTAAAATGATAAAAAATCTATAA
* *
58710174 AAATTAATAAAAA
1 AAAATAATTAAAA
58710187 GTTATAAGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 29 0.76
31 9 0.24
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.26
Consensus pattern (30 bp):
AAAATAATTAAAATGATAAAAAATCTATAA
Found at i:58710192 original size:20 final size:19
Alignment explanation
Indices: 58710133--58710193 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 19
58710123 GAAATGATAG
* *
58710133 AAAATTATATAAAAATAATT
1 AAAATTA-ATAAAAATTATA
*
58710153 AAAA-TGATAAAAAATCTATA
1 AAAATTAAT-AAAAAT-TATA
58710173 AAAATTAATAAAAAGTTATA
1 AAAATTAATAAAAA-TTATA
58710193 A
1 A
58710194 GAACTTTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
18 2 0.06
19 7 0.21
20 20 0.61
21 4 0.12
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.30
Consensus pattern (19 bp):
AAAATTAATAAAAATTATA
Found at i:58710601 original size:20 final size:20
Alignment explanation
Indices: 58710576--58710615 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
58710566 TAAAATACAA
58710576 GTTATAAAAAATTATTAAAT
1 GTTATAAAAAATTATTAAAT
58710596 GTTATAAAAAATTATTAAAT
1 GTTATAAAAAATTATTAAAT
58710616 TATTGCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (20 bp):
GTTATAAAAAATTATTAAAT
Found at i:58712265 original size:2 final size:2
Alignment explanation
Indices: 58712258--58712285 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
58712248 CACATCCTGT
58712258 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
58712286 AAAAAAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:58715419 original size:29 final size:26
Alignment explanation
Indices: 58715365--58715423 Score: 64
Period size: 29 Copynumber: 2.2 Consensus size: 26
58715355 AATCCCTTTT
58715365 TTTTTTAAATTTACCGAAATAAGCCA
1 TTTTTTAAATTTACCGAAATAAGCCA
* **
58715391 CTTTTTTAATTATTTACCGGAATGGGCCA
1 -TTTTTTAA--ATTTACCGAAATAAGCCA
58715420 TTTT
1 TTTT
58715424 CCGCGAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 8 0.30
28 4 0.15
29 15 0.56
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (26 bp):
TTTTTTAAATTTACCGAAATAAGCCA
Found at i:58732942 original size:14 final size:14
Alignment explanation
Indices: 58732923--58732962 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
58732913 TTGATTGCCA
*
58732923 GTAAAATGTTTTTT
1 GTAAAATGTTTTCT
*
58732937 GTAAAATGATTTCT
1 GTAAAATGTTTTCT
*
58732951 GGAAAATGTTTT
1 GTAAAATGTTTT
58732963 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (14 bp):
GTAAAATGTTTTCT
Found at i:58732971 original size:20 final size:20
Alignment explanation
Indices: 58732946--58732985 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
58732936 TGTAAAATGA
*
58732946 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
58732966 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
58732986 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:58732979 original size:34 final size:35
Alignment explanation
Indices: 58732931--58732997 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
58732921 CAGTAAAATG
* *
58732931 TTTTTTGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTACTGGAAAATATTTTAC
58732965 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
58732998 CTGGTGTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.06, G:0.13, T:0.49
Consensus pattern (35 bp):
TTTTCTGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:58733001 original size:14 final size:15
Alignment explanation
Indices: 58732925--58733001 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
58732915 GATTGCCAGT
* *
58732925 AAAATG-TTTTTTGT
1 AAAATGATTTTCTGG
58732939 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
58732953 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
58732973 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
58732988 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
58733002 TGTTTAATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.45
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:58735820 original size:18 final size:18
Alignment explanation
Indices: 58735799--58735849 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
58735789 AGGAATGAAG
58735799 GAAGGGAGAAGAATGGAT
1 GAAGGGAGAAGAATGGAT
*** *
58735817 GAAGGGAGCTTACTGGAT
1 GAAGGGAGAAGAATGGAT
58735835 GAAGGGAGAAGAATG
1 GAAGGGAGAAGAATG
58735850 CCTGAAAGCT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.43, T:0.14
Consensus pattern (18 bp):
GAAGGGAGAAGAATGGAT
Found at i:58752351 original size:31 final size:30
Alignment explanation
Indices: 58752308--58752404 Score: 99
Period size: 31 Copynumber: 3.2 Consensus size: 30
58752298 TATCAAAATT
* *
58752308 GTCACTTTTGTTTACCTCATGTTACATTTTA
1 GTCACTTATGTTTA-CTAATGTTACATTTTA
58752339 GTCACTTATGTTTGA--AATGTTACATTTTA
1 GTCACTTATGTTT-ACTAATGTTACATTTTA
* ** *
58752368 GTCACTTATGTTAACGTGTTGTAACATTTTA
1 GTCACTTATGTTTAC-TAATGTTACATTTTA
58752399 GTCACT
1 GTCACT
58752405 GAGCCGTTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
28 1 0.02
29 25 0.45
31 29 0.52
32 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.13, T:0.47
Consensus pattern (30 bp):
GTCACTTATGTTTACTAATGTTACATTTTA
Found at i:58761795 original size:23 final size:23
Alignment explanation
Indices: 58761768--58761811 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
58761758 AATGTTGTTG
58761768 AAAGAAGTAATTATAAATTCTGA
1 AAAGAAGTAATTATAAATTCTGA
58761791 AAAGAAGTAATTATAAATTCT
1 AAAGAAGTAATTATAAATTCT
58761812 TAGTACTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.11, T:0.32
Consensus pattern (23 bp):
AAAGAAGTAATTATAAATTCTGA
Found at i:58774549 original size:33 final size:32
Alignment explanation
Indices: 58774453--58774566 Score: 112
Period size: 33 Copynumber: 3.6 Consensus size: 32
58774443 CTTAAATAAC
*
58774453 ATTTGGTACCTGAAA-TTGATATATTTTTTCCCTA
1 ATTTGGTACCT-AAACTTGAT-T-TTTTTTTCCTA
* **
58774487 ATTTGGTACTTAAAC-T--TTTTTTGGT-CTA
1 ATTTGGTACCTAAACTTGATTTTTTTTTCCTA
58774515 ATTTGGTACCTAAACTTGACTTTTTTTTTCCTA
1 ATTTGGTACCTAAACTTGA-TTTTTTTTTCCTA
*
58774548 ATTTGATACCTAAACTTGA
1 ATTTGGTACCTAAACTTGA
58774567 CACTTTTTCT
Statistics
Matches: 66, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
28 17 0.26
29 5 0.08
30 1 0.02
31 1 0.02
32 7 0.11
33 25 0.38
34 10 0.15
ACGTcount: A:0.25, C:0.15, G:0.11, T:0.48
Consensus pattern (32 bp):
ATTTGGTACCTAAACTTGATTTTTTTTTCCTA
Found at i:58774574 original size:33 final size:33
Alignment explanation
Indices: 58774512--58774574 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
58774502 TTTTTTTGGT
* **
58774512 CTAATTTGGTACCTAAACTTGACTTTTTTTTTC
1 CTAATTTGATACCTAAACTTGACACTTTTTTTC
58774545 CTAATTTGATACCTAAACTTGACACTTTTT
1 CTAATTTGATACCTAAACTTGACACTTTTT
58774575 CTTAAGTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (33 bp):
CTAATTTGATACCTAAACTTGACACTTTTTTTC
Found at i:58774585 original size:31 final size:32
Alignment explanation
Indices: 58774512--58774587 Score: 82
Period size: 33 Copynumber: 2.4 Consensus size: 32
58774502 TTTTTTTGGT
* * **
58774512 CTAATTTGGTACCTAAACTTGACTTTTTTTTTC
1 CTAAGTTGATACCTAAACTTGAC-TACTTTTTC
*
58774545 CTAATTTGATACCTAAACTTGAC-ACTTTTTC
1 CTAAGTTGATACCTAAACTTGACTACTTTTTC
*
58774576 TTAAGTTGATAC
1 CTAAGTTGATAC
58774588 TTAATCTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 16 0.42
33 22 0.58
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.46
Consensus pattern (32 bp):
CTAAGTTGATACCTAAACTTGACTACTTTTTC
Found at i:58775072 original size:60 final size:57
Alignment explanation
Indices: 58774991--58775140 Score: 185
Period size: 59 Copynumber: 2.5 Consensus size: 57
58774981 ATTGAACTAA
*
58774991 AAAAAAATTTAGGTACCAAATTAGGAAAAAATTATCAAGTTCAGGCAT-CAAATTGGGGCC
1 AAAAAAATTTAGGTACCAAATTA-GAAAAAATTATCAAGTTCA--CATACAAATT-GGGAC
* * *
58775051 CAAAAAATTTAGGTACCAAATTAGAAAAAAGTGTCAAGTTCACATACCAAATTGGGAC
1 AAAAAAATTTAGGTACCAAATTAGAAAAAATTATCAAGTTCACATA-CAAATTGGGAC
* *
58775109 AAAAAAATTTTAAGTACCAAATTAAAAAAAAT
1 AAAAAAA-TTTAGGTACCAAATTAGAAAAAAT
58775141 CAAATTTAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
57 3 0.04
58 10 0.13
59 44 0.56
60 22 0.28
ACGTcount: A:0.50, C:0.13, G:0.14, T:0.23
Consensus pattern (57 bp):
AAAAAAATTTAGGTACCAAATTAGAAAAAATTATCAAGTTCACATACAAATTGGGAC
Found at i:58775647 original size:15 final size:15
Alignment explanation
Indices: 58775612--58775641 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58775602 AAATTTATAA
58775612 AATATTTTTTATTTT
1 AATATTTTTTATTTT
*
58775627 AATATTTTTTGTTTT
1 AATATTTTTTATTTT
58775642 TGTATTGAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (15 bp):
AATATTTTTTATTTT
Found at i:58776059 original size:19 final size:20
Alignment explanation
Indices: 58776035--58776078 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
58776025 TAAAATAAAA
* *
58776035 AAAATATTTTTTAAATTT-T
1 AAAATATTTATAAAATTTAT
58776054 AAAATATTTATAAAATTTAT
1 AAAATATTTATAAAATTTAT
58776074 AAAAT
1 AAAAT
58776079 TTATACTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AAAATATTTATAAAATTTAT
Found at i:58776063 original size:9 final size:9
Alignment explanation
Indices: 58776046--58776106 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 9
58776036 AAATATTTTT
*
58776046 TAAATTTTA
1 TAAAATTTA
58776055 -AAATATTTA
1 TAAA-ATTTA
58776064 TAAAATTTA
1 TAAAATTTA
58776073 TAAAATTTA
1 TAAAATTTA
**
58776082 T-ACTTTTAA
1 TAAAATTT-A
*
58776091 TAAAAATTA
1 TAAAATTTA
58776100 TAAAATT
1 TAAAATT
58776107 AAAAACTCTA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
8 7 0.17
9 28 0.68
10 6 0.15
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (9 bp):
TAAAATTTA
Found at i:58776072 original size:18 final size:18
Alignment explanation
Indices: 58776035--58776083 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
58776025 TAAAATAAAA
* *
58776035 AAAATATTTTTTAAATTTT
1 AAAATA-TTTATAAAATTT
58776054 AAAATATTTATAAAATTT
1 AAAATATTTATAAAATTT
58776072 ATAAA-ATTTATA
1 A-AAATATTTATA
58776084 CTTTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
AAAATATTTATAAAATTT
Found at i:58781508 original size:30 final size:29
Alignment explanation
Indices: 58781462--58781528 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 29
58781452 AGAAATTATA
*
58781462 AATTGATTTTTCTATTATTTTATAAGCGTTT
1 AATTGATTTTTCTATTATTTT-TAA-AGTTT
*
58781493 AATT-ATTTTTTTATTATTTTTAAAGTTT
1 AATTGATTTTTCTATTATTTTTAAAGTTT
58781521 AATTGATT
1 AATTGATT
58781529 GTTTAAGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 8 0.24
29 6 0.18
30 15 0.45
31 4 0.12
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.61
Consensus pattern (29 bp):
AATTGATTTTTCTATTATTTTTAAAGTTT
Found at i:58782852 original size:16 final size:17
Alignment explanation
Indices: 58782833--58782868 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
58782823 TCTACTTCAA
*
58782833 TATTTTTTGAAT-TTTT
1 TATTTTTTAAATATTTT
58782849 TATTTTTTAAATATTTT
1 TATTTTTTAAATATTTT
58782866 TAT
1 TAT
58782869 AATTTGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (17 bp):
TATTTTTTAAATATTTT
Found at i:58782878 original size:19 final size:19
Alignment explanation
Indices: 58782843--58782884 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
58782833 TATTTTTTGA
* *
58782843 ATTTTTTATTTTTTAAA-T
1 ATTTTTTAATTTGTAAATT
58782861 ATTTTTATAATTTGTAAATT
1 ATTTTT-TAATTTGTAAATT
58782881 ATTT
1 ATTT
58782885 GTTGATGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
19 9 0.45
20 5 0.25
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
ATTTTTTAATTTGTAAATT
Found at i:58784567 original size:25 final size:25
Alignment explanation
Indices: 58784538--58784601 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
58784528 TATATATATC
**
58784538 TAAATACATATTTATTTA-ATTTTCA
1 TAAATACATATACATTTACATTTT-A
*
58784563 TAAATATATATACATTTACATTTTA
1 TAAATACATATACATTTACATTTTA
58784588 T-AATACATATACAT
1 TAAATACATATACAT
58784602 CTTCCACATC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 12 0.35
25 17 0.50
26 5 0.15
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (25 bp):
TAAATACATATACATTTACATTTTA
Found at i:58784728 original size:30 final size:30
Alignment explanation
Indices: 58784675--58784733 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
58784665 TTTTAAATTA
*
58784675 TTATAAATATATATTTCATTATATATATAC
1 TTATAAATATATATTTCAATATATATATAC
* * * *
58784705 TTATATATATGTATTTTAATATATGTATA
1 TTATAAATATATATTTCAATATATATATA
58784734 TACATATTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (30 bp):
TTATAAATATATATTTCAATATATATATAC
Found at i:58784777 original size:19 final size:17
Alignment explanation
Indices: 58784754--58784801 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
58784744 CAAAATTTAC
58784754 TTATATATAT-CATACTT
1 TTATATATATACATA-TT
58784771 TTATATATATACATATT
1 TTATATATATACATATT
*
58784788 TTGTA-A-ATACATAT
1 TTATATATATACATAT
58784802 ACATATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 8 0.28
16 1 0.03
17 16 0.55
18 4 0.14
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (17 bp):
TTATATATATACATATT
Found at i:58796497 original size:45 final size:45
Alignment explanation
Indices: 58796432--58797006 Score: 445
Period size: 45 Copynumber: 12.9 Consensus size: 45
58796422 AACAGATCGG
* * * **
58796432 TGAAGATAACAAATCATATCTCCATGAAGTTGCAGTGGAGTGGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * ** **
58796477 TGAAGATAGCAAGTCTTATCTCCCTGAAAATGCAGCAGAGCAGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * **
58796522 TGAAGATAGCAAATCCTATCTACCTAAAGTTACAGTGGAGTGGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * *
58796567 TGAAGATAGCAAGTCTTATCTCCCTGAGGTTGCAGCGGAGTAGAC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* **
58796612 TGAAGATAGCAAATCCTATCTCCCTGAAGTTACAGTGGAGTGGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * * * *
58796657 TGAAAATAACAAGTCTTATCTCCCTAAAATTGCAGCGGAGCAGAC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * *
58796702 TGAGGATAGCAAATCCTATCTCCCTAAAGTTGTAGTGGAGCAGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* *
58796747 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * *
58796792 TGAAGA-A-AATAATCCTATCTTCTTGAAGTTGCAGTGGAGCTGAT
1 TGAAGATAGCA-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * * *
58796836 T-AAAACT-GTAGATCTTATCTCTCTGAAGTTACAGAGG-GCAGA-
1 TGAAGA-TAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
* * * * * * *
58796878 T-CACAT--CTAGTCTTATCTCCCTGAAGTTGCAGAT-GAGTAGAC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAG-TGGAGCAGAT
* * * * *
58796920 TGAATA-AACCAAT-CTGATTTCCCTGAAAATTGCAGTGGAGCAGAT
1 TGAAGATAGCAAATCCT-ATCTCCCTG-AAGTTGCAGTGGAGCAGAT
* * *
58796965 TGAAGATAACAAATCCTATCTCCATGAAGTTGCAATGGAGCA
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCA
58797007 TATAAAAATC
Statistics
Matches: 412, Mismatches: 103, Indels: 30
0.76 0.19 0.06
Matches are distributed among these distances:
40 21 0.05
41 5 0.01
42 4 0.01
43 11 0.03
44 63 0.15
45 293 0.71
46 13 0.03
47 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (45 bp):
TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
Found at i:58796552 original size:90 final size:90
Alignment explanation
Indices: 58796432--58797004 Score: 526
Period size: 90 Copynumber: 6.4 Consensus size: 90
58796422 AACAGATCGG
* * *
58796432 TGAAGATAACAAATCATATCTCCATGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
* *
58796497 TCCCTGAAAATGCAGCAGAGCAGAT
66 TCCCTGAAAATGCAGCGGAGCAGAC
* * *
58796522 TGAAGATAGCAAATCCTATCTACCTAAAGTTACAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
*** *
58796587 TCCCTGAGGTTGCAGCGGAGTAGAC
66 TCCCTGAAAATGCAGCGGAGCAGAC
* * *
58796612 TGAAGATAGCAAATCCTATCTCCCTGAAGTTACAGTGGAGTGGATTGAAAATAACAAGTCTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
58796677 TCCCT-AAAATTGCAGCGGAGCAGAC
66 TCCCTGAAAA-TGCAGCGGAGCAGAC
* * * **
58796702 TGAGGATAGCAAATCCTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGATAGCAAGTCTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
** * *
58796767 TCCCTGAAGTTGCAGTGGAGCAGAT
66 TCCCTGAAAATGCAGCGGAGCAGAC
* * * * *
58796792 TGAAGA-A-AATAATCCTATCTTCTTGAAGTTGCAGTGGAGCT-GATT-AAAACT-G-TAGATCT
1 TGAAGATAGCA-AATCCTATCTCCCTGAAGTTGCAGTGGAG-TGGATTGAAGA-TAGCAAG-TCT
* ** * *
58796851 TATCTCTCTGAAGTTACAGAGG-GCAGA-
62 TATCTCCCTGAAAATGCAGCGGAGCAGAC
* * * * * * * * * * *
58796878 T-CACAT--CTAGTCTTATCTCCCTGAAGTTGCAGAT-GAGTAGACTGAATAAACCAA-TCTGAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAG-TGGAGTGGATTGAAGATAGCAAGTCTTAT
* * *
58796938 TTCCCTGAAAATTGCAGTGGAGCAGAT
65 CTCCCTGAAAA-TGCAGCGGAGCAGAC
* * *
58796965 TGAAGATAACAAATCCTATCTCCATGAAGTTGCAATGGAG
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAG
58797005 CATATAAAAA
Statistics
Matches: 393, Mismatches: 71, Indels: 38
0.78 0.14 0.08
Matches are distributed among these distances:
83 1 0.00
84 38 0.10
85 12 0.03
86 7 0.02
87 8 0.02
88 30 0.08
89 33 0.08
90 262 0.67
91 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (90 bp):
TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
TCCCTGAAAATGCAGCGGAGCAGAC
Found at i:58798744 original size:19 final size:17
Alignment explanation
Indices: 58798721--58798756 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
58798711 CAAAATTTAC
58798721 TTATATATAT-CATACTT
1 TTATATATATACATA-TT
58798738 TTATATATATACATATT
1 TTATATATATACATATT
58798755 TT
1 TT
58798757 GTAAATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
TTATATATATACATATT
Found at i:58800103 original size:40 final size:40
Alignment explanation
Indices: 58800059--58800152 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
58800049 AAAAATTATA
* *
58800059 TTTAATAAAATAAAACATTTCTTATATTTAT-TTGTGTTTT
1 TTTAATAAAATAAAACATTTATTATATTTATATAGTG-TTT
* * *
58800099 TTTAATATAACAAAATATTTATTATATTTATGATAGTGTTT
1 TTTAATAAAATAAAACATTTATTATATTTAT-ATAGTGTTT
58800140 TTTAATATAAATA
1 TTTAATA-AAATA
58800153 CTTTTTAATA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 27 0.61
41 10 0.23
42 7 0.16
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.52
Consensus pattern (40 bp):
TTTAATAAAATAAAACATTTATTATATTTATATAGTGTTT
Found at i:58801916 original size:9 final size:9
Alignment explanation
Indices: 58801885--58801933 Score: 50
Period size: 8 Copynumber: 5.7 Consensus size: 9
58801875 CATTGTTAAG
58801885 TTAA-ATTT
1 TTAATATTT
58801893 TTAATATTT
1 TTAATATTT
*
58801902 AT-ATATTT
1 TTAATATTT
58801910 TTAATATTTT
1 TTAATA-TTT
*
58801920 TTGA-ATTT
1 TTAATATTT
58801928 TTAATA
1 TTAATA
58801934 AATTTAATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
8 17 0.52
9 10 0.30
10 6 0.18
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (9 bp):
TTAATATTT
Found at i:58807002 original size:48 final size:48
Alignment explanation
Indices: 58806923--58807016 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
58806913 AGGGAATTCT
* *
58806923 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
58806971 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
58807017 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:58833799 original size:32 final size:32
Alignment explanation
Indices: 58833725--58833800 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
58833715 AATTAGAGGC
*
58833725 ATTGATAAATTTGACTTTCATTTTTATTTTCA
1 ATTGATAAATTTGACTTTCATTATTATTTTCA
*
58833757 ATATTA-AAATTTGACTTT-ATTATTATTATTCA
1 AT-TGATAAATTTGACTTTCATTATTATT-TTCA
58833789 ATTGATAAATTT
1 ATTGATAAATTT
58833801 TTACTTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
31 10 0.26
32 26 0.68
33 2 0.05
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (32 bp):
ATTGATAAATTTGACTTTCATTATTATTTTCA
Found at i:58834868 original size:18 final size:18
Alignment explanation
Indices: 58834847--58834887 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
58834837 CAAGTAAAGA
58834847 GAGATGGAAGA-AGAGATG
1 GAGATGG-AGATAGAGATG
*
58834865 GAGATGGAGATGGAGATG
1 GAGATGGAGATAGAGATG
58834883 GAGAT
1 GAGAT
58834888 AGAGGCAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.39, C:0.00, G:0.46, T:0.15
Consensus pattern (18 bp):
GAGATGGAGATAGAGATG
Found at i:58834870 original size:6 final size:6
Alignment explanation
Indices: 58834859--58834887 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
58834849 GATGGAAGAA
58834859 GAGATG GAGATG GAGATG GAGATG GAGAT
1 GAGATG GAGATG GAGATG GAGATG GAGAT
58834888 AGAGGCAGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.48, T:0.17
Consensus pattern (6 bp):
GAGATG
Found at i:58839774 original size:18 final size:18
Alignment explanation
Indices: 58839733--58839774 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
58839723 GATAATTCTC
58839733 ATATTTTATTTTTAAAAT
1 ATATTTTATTTTTAAAAT
*
58839751 AAATTTTATTTTTAACAA-
1 ATATTTTATTTTTAA-AAT
58839769 ATATTT
1 ATATTT
58839775 AGATTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
ATATTTTATTTTTAAAAT
Found at i:58843208 original size:14 final size:14
Alignment explanation
Indices: 58843185--58843214 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
58843175 AAAATGTTGG
*
58843185 TTAAATTTCTTATA
1 TTAAACTTCTTATA
58843199 TTAAACTTCTTATA
1 TTAAACTTCTTATA
58843213 TT
1 TT
58843215 GATTGCAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (14 bp):
TTAAACTTCTTATA
Found at i:58848029 original size:38 final size:38
Alignment explanation
Indices: 58847986--58848062 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 38
58847976 TTAGAAATTA
*
58847986 TTTTCACATTAAAATTATAATTTCTTT-TTCAAATTAAT
1 TTTTCACATTAAAATTAGAATTT-TTTATTCAAATTAAT
*
58848024 TTTTCATATTAAAATTAGAATTTTTTCATTCAAATTAAT
1 TTTTCACATTAAAATTAGAATTTTTT-ATTCAAATTAAT
58848063 CCTTGATAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
37 3 0.09
38 21 0.60
39 11 0.31
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.52
Consensus pattern (38 bp):
TTTTCACATTAAAATTAGAATTTTTTATTCAAATTAAT
Found at i:58861329 original size:46 final size:46
Alignment explanation
Indices: 58861228--58861383 Score: 237
Period size: 46 Copynumber: 3.5 Consensus size: 46
58861218 TACGTATGAT
* *
58861228 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
58861271 CACTTATCACTTTGTCACTTAATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
58861317 CACTTATCACTTTGTCACTTGATCAGATACGTGTCGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
58861363 CACTTATCACTTTATCACTTG
1 CACTTATCACTTTGTCACTTG
58861384 TCACTGATCA
Statistics
Matches: 103, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
43 10 0.10
44 5 0.05
45 19 0.18
46 69 0.67
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:58873898 original size:52 final size:48
Alignment explanation
Indices: 58873879--58874081 Score: 256
Period size: 46 Copynumber: 4.3 Consensus size: 48
58873869 TGACAAGTGG
* *
58873879 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
58873925 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* * *
58873977 AAAGTGATAAGTGATAACTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
58874023 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
58874069 AAAGTGATAAGTG
1 AAAGTGATAAGTG
58874082 GCTACACTTA
Statistics
Matches: 142, Mismatches: 9, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
46 99 0.70
52 43 0.30
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:58873933 original size:98 final size:98
Alignment explanation
Indices: 58873813--58874081 Score: 448
Period size: 98 Copynumber: 2.7 Consensus size: 98
58873803 TTTGAGTACT
*
58873813 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
* *
58873878 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAACTTCGGCTATACTTA
**
58873911 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
58873976 AAAAGTGATAAGTGATAACTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAACTTCGGCTATACTTA
* *
58874009 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
58874074 GATAAGTG
65 GAAAAGTG
58874082 GCTACACTTA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 148 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAACTTCGGCTATACTTA
Found at i:58874089 original size:37 final size:37
Alignment explanation
Indices: 58874045--58874190 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
58874035 GATAGCTTTA
*
58874045 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
58874082 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
58874119 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
58874156 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
58874191 ATCATACGTA
Statistics
Matches: 106, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
35 12 0.11
36 4 0.04
37 90 0.85
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:58875521 original size:58 final size:59
Alignment explanation
Indices: 58875444--58875562 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
58875434 CATGTGAACA
58875444 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
58875503 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
58875561 TG
1 TG
58875563 ATTTCGTGTA
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 55 0.92
59 5 0.08
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (59 bp):
TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:58875553 original size:28 final size:28
Alignment explanation
Indices: 58875463--58875553 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
58875453 GTGATTCCGT
58875463 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
58875491 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
58875520 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
58875549 GTAAG
1 GTAAG
58875554 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:58875576 original size:49 final size:49
Alignment explanation
Indices: 58875504--58875646 Score: 214
Period size: 49 Copynumber: 2.9 Consensus size: 49
58875494 AGTGATATGT
* *
58875504 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* * *
58875553 GTGATATGTGATTTCGTGTAAGACCGTAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* * *
58875602 GTGATTTGTGATTACGTGTAAGATCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
58875647 AGAAAACGAA
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 85 1.00
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:58878860 original size:52 final size:48
Alignment explanation
Indices: 58878841--58879043 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
58878831 TGACAAGTGG
* *
58878841 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
58878887 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
58878939 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
58878985 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
58879031 AAAGTGATAAGTG
1 AAAGTGATAAGTG
58879044 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:58878895 original size:98 final size:98
Alignment explanation
Indices: 58878775--58879043 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
58878765 TTTGAGTACT
*
58878775 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
58878840 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
58878873 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
58878938 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
58878971 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
58879036 GATAAGTG
65 GAAAAGTG
58879044 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:58879051 original size:37 final size:37
Alignment explanation
Indices: 58879007--58879152 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
58878997 GATAGCTTTA
*
58879007 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
58879044 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
58879081 GCTACACTTATCTGATCAAGAAACAAACTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
58879118 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
58879153 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Done.