Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 204 of 214
Found at i:59885085 original size:8 final size:8
Alignment explanation
Indices: 59885072--59885100 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
59885062 TTTTAAATAA
59885072 TATTTTAT
1 TATTTTAT
59885080 TATTTTAT
1 TATTTTAT
59885088 TATTTTAT
1 TATTTTAT
59885096 TATTT
1 TATTT
59885101 AGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:59888821 original size:23 final size:21
Alignment explanation
Indices: 59888763--59888818 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
59888753 ACTGATCAGT
* *
59888763 ATACGACACATAAGTGCTTGA
1 ATACGACACATAAGTACCTGA
*
59888784 A-ACGACACACGAAGTACCTGAA
1 ATACGACACA-TAAGTACCTG-A
59888806 ATACGACACATAA
1 ATACGACACATAA
59888819 AGTGACTGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 8 0.29
21 8 0.29
22 4 0.14
23 8 0.29
ACGTcount: A:0.45, C:0.23, G:0.16, T:0.16
Consensus pattern (21 bp):
ATACGACACATAAGTACCTGA
Found at i:59888827 original size:23 final size:22
Alignment explanation
Indices: 59888763--59888827 Score: 57
Period size: 23 Copynumber: 3.0 Consensus size: 22
59888753 ACTGATCAGT
59888763 ATACGACACATAAGTG-CTTG-A
1 ATACGACACATAAGTGAC-TGAA
*
59888784 A-ACGACACACGAAGT-ACCTGAA
1 ATACGACACA-TAAGTGA-CTGAA
59888806 ATACGACACATAAAGTGACTGA
1 ATACGACACAT-AAGTGACTGA
59888828 TCGACAAAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
20 8 0.23
21 7 0.20
22 3 0.09
23 16 0.46
24 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.17
Consensus pattern (22 bp):
ATACGACACATAAGTGACTGAA
Found at i:59888999 original size:30 final size:30
Alignment explanation
Indices: 59888946--59889004 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
59888936 ACTTTCATAA
* * *
59888946 CAAATTTAAGATCACTATTCAATTTCAATTT
1 CAAATTCAAGATCAATATACAA-TTCAATTT
59888977 CAAATTCAA-ATCAATATACAATTCAATT
1 CAAATTCAAGATCAATATACAATTCAATT
59889005 ATACTTACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.28
30 10 0.40
31 8 0.32
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (30 bp):
CAAATTCAAGATCAATATACAATTCAATTT
Found at i:59890031 original size:25 final size:25
Alignment explanation
Indices: 59890001--59890072 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 25
59889991 AGCACTCTCT
* *
59890001 CGAGCCATATAACAGGATGCTCATG
1 CGAGCCATATAACAGGAAGCTCATC
* * *
59890026 TGAGCCATGTAACAGGAAGCTTATC
1 CGAGCCATATAACAGGAAGCTCATC
59890051 CGAG-C-TATAACAGGAAGCTCAT
1 CGAGCCATATAACAGGAAGCTCAT
59890073 TAAGCTTAAC
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 15 0.38
24 1 0.03
25 23 0.59
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (25 bp):
CGAGCCATATAACAGGAAGCTCATC
Found at i:59890358 original size:24 final size:25
Alignment explanation
Indices: 59890302--59890369 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 25
59890292 ATACCGATTG
* *
59890302 GGATGCTCGCAAGAACTATATAACG
1 GGATGCTCGCAAGAGCTATATAACA
*
59890327 GGAAGCTCG-AGAGAGCT-TATAACA
1 GGATGCTCGCA-AGAGCTATATAACA
*
59890351 GGATGCTCGTAAGAGCTAT
1 GGATGCTCGCAAGAGCTAT
59890370 GGTGTGTCCG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
24 21 0.58
25 15 0.42
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.21
Consensus pattern (25 bp):
GGATGCTCGCAAGAGCTATATAACA
Found at i:59890598 original size:25 final size:25
Alignment explanation
Indices: 59890559--59890606 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
59890549 TATACACAAA
59890559 TATATCAGGAAGCTCACAAATAGTC
1 TATATCAGGAAGCTCACAAATAGTC
* * *
59890584 TATATCATGACGCTCATAAATAG
1 TATATCAGGAAGCTCACAAATAG
59890607 CTGCGGTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (25 bp):
TATATCAGGAAGCTCACAAATAGTC
Found at i:59890915 original size:410 final size:410
Alignment explanation
Indices: 59890155--59890969 Score: 1364
Period size: 410 Copynumber: 2.0 Consensus size: 410
59890145 GAACCACATT
* *
59890155 AGGAAGCTCACAAGGAGCCTATATCATAACGCTCATAAATAGCTGTGGTATGTTCGCATTATATG
1 AGGAAGCTCACAAAGAGCCTATATCATAACGCTCATAAATAGCTGCGGTATGTTCGCATTATATG
* *
59890220 TAGGATCCATACTGATATTATAACATGACGCTCACAAAGAGCTGCGGTATGACTGCAACACATGC
66 TAGGATCCATACCGATATTATAACAGGACGCTCACAAAGAGCTGCGGTATGACTGCAACACATGC
* *
59890285 AGGGTCAATACCGATTGGGATGCTCGCAAGAACTATATAACGGGAAGCTCGAGAGAGCTTATAAC
131 AGGGTCAATACCGATTGGGATGCTCGCAAGAACCATATAACGGAAAGCTCGAGAGAGCTTATAAC
* * *
59890350 AGGATGCTCGTAAGAGCTATGGTGTGTCCGCAACATATGCAGAACCACAACCAATATGGGAAATC
196 AGGATGCTCGTAAGAGCTATGGTGTGTCCACAACATATGCAGAACCACAACCAATACGAGAAATC
* *
59890415 CTGTTCCCATCGAATTTCATTAATTCAAACAGGACATATTACTTATTAGGCATTATTGAACATGA
261 ATGTTCCCATCGAATTTCATTAATTCAAACAGGACATATTACTTATCAGGCATTATTGAACATGA
*
59890480 GATCAATTTCATATTTTCATAGCATTTATATAATTCACATATACACGACGTTCAATTCAAACATA
326 GATCAATTTCATATTTTCATAGCATTTATACAATTCACATATACACGACGTTCAATTCAAACATA
*
59890545 TAAATATACACAAATATATC
391 CAAATATACACAAATATATC
* * *
59890565 AGGAAGCTCACAAATAGTCTATATCATGACGCTCATAAATAGCTGCGGTATG-TCTGCATTATAT
1 AGGAAGCTCACAAAGAGCCTATATCATAACGCTCATAAATAGCTGCGGTATGTTC-GCATTATAT
* *
59890629 GTAGGATCCATACCGATCA-TATAACAGGACGCTCACAAAGAGCTGTGGTATGACTGCAACATAT
65 GTAGGATCCATACCGAT-ATTATAACAGGACGCTCACAAAGAGCTGCGGTATGACTGCAACACAT
* * *
59890693 GCAGGGTCAATACCGATTGGGATGCTTGCAATAACCATATAATGGAAAGCTCGAGAGAGCTTATA
129 GCAGGGTCAATACCGATTGGGATGCTCGCAAGAACCATATAACGGAAAGCTCGAGAGAGCTTATA
*
59890758 ACAGGATGCTCGTAAGAGCTATGGTGTGTTCACAACATATGCAGAACCACAACCAATACGAGAAA
194 ACAGGATGCTCGTAAGAGCTATGGTGTGTCCACAACATATGCAGAACCACAACCAATACGAGAAA
* * *
59890823 TCATGTTTCCATCGAATTTCATTAATTCAAACGGGACATATTACTTATCGGGCATTATTGAACAT
259 TCATGTTCCCATCGAATTTCATTAATTCAAACAGGACATATTACTTATCAGGCATTATTGAACAT
*
59890888 GTGATCAATTTCATATTTTCATAGCATTTATACAATTCACATATACACGACGTTCAATTCAAACA
324 GAGATCAATTTCATATTTTCATAGCATTTATACAATTCACATATACACGACGTTCAATTCAAACA
59890953 TACAAATATACACAAAT
389 TACAAATATACACAAAT
59890970 TAGTTACACA
Statistics
Matches: 377, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
409 2 0.01
410 374 0.99
411 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (410 bp):
AGGAAGCTCACAAAGAGCCTATATCATAACGCTCATAAATAGCTGCGGTATGTTCGCATTATATG
TAGGATCCATACCGATATTATAACAGGACGCTCACAAAGAGCTGCGGTATGACTGCAACACATGC
AGGGTCAATACCGATTGGGATGCTCGCAAGAACCATATAACGGAAAGCTCGAGAGAGCTTATAAC
AGGATGCTCGTAAGAGCTATGGTGTGTCCACAACATATGCAGAACCACAACCAATACGAGAAATC
ATGTTCCCATCGAATTTCATTAATTCAAACAGGACATATTACTTATCAGGCATTATTGAACATGA
GATCAATTTCATATTTTCATAGCATTTATACAATTCACATATACACGACGTTCAATTCAAACATA
CAAATATACACAAATATATC
Found at i:59896532 original size:52 final size:52
Alignment explanation
Indices: 59896475--59896579 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
59896465 AAAACTTTGT
59896475 TAGGTGCTGGTAGATTGGATTGAGTTTTTAGATTATGGTTAGAATTGATTAG
1 TAGGTGCTGGTAGATTGGATTGAGTTTTTAGATTATGGTTAGAATTGATTAG
* * *
59896527 TAGGTGTTGGTAGATTGGATTGGGTTTTTAGGTTATGGTTAGAATTGATTAG
1 TAGGTGCTGGTAGATTGGATTGAGTTTTTAGATTATGGTTAGAATTGATTAG
59896579 T
1 T
59896580 CTAATTCAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.23, C:0.01, G:0.32, T:0.44
Consensus pattern (52 bp):
TAGGTGCTGGTAGATTGGATTGAGTTTTTAGATTATGGTTAGAATTGATTAG
Found at i:59896565 original size:28 final size:28
Alignment explanation
Indices: 59896482--59896565 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 28
59896472 TGTTAGGTGC
*
59896482 TGGTAGATTGGATTGAGTTTTTAGATTA
1 TGGTAGATTGGATTGAGTTTTTAGGTTA
59896510 TGGTTAGAATT-GATT-AG----TAGGTGT-
1 TGG-TAG-ATTGGATTGAGTTTTTAGGT-TA
*
59896534 TGGTAGATTGGATTGGGTTTTTAGGTTA
1 TGGTAGATTGGATTGAGTTTTTAGGTTA
59896562 TGGT
1 TGGT
59896566 TAGAATTGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 20
0.67 0.03 0.30
Matches are distributed among these distances:
22 3 0.07
23 7 0.16
24 8 0.18
25 1 0.02
27 1 0.02
28 14 0.32
29 7 0.16
30 3 0.07
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.45
Consensus pattern (28 bp):
TGGTAGATTGGATTGAGTTTTTAGGTTA
Found at i:59914515 original size:23 final size:24
Alignment explanation
Indices: 59914459--59914516 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 24
59914449 TAGTGAAAAT
59914459 AATTA-CTCTCAATTTGGAATCTA
1 AATTAGCTCTCAATTTGGAATCTA
* *
59914482 AATTAG-T-TCAATTTTGAAT-TC
1 AATTAGCTCTCAATTTGGAATCTA
*
59914503 AATTGGCTCTCAAT
1 AATTAGCTCTCAAT
59914517 AATACTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 6 0.21
22 12 0.41
23 11 0.38
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (24 bp):
AATTAGCTCTCAATTTGGAATCTA
Found at i:59915651 original size:23 final size:24
Alignment explanation
Indices: 59915603--59915651 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
59915593 AAAATCAGAT
*
59915603 AATTACTTAATTTTTTATTAATTA
1 AATTACTTAATTTTTTATTAAATA
*
59915627 AATTA-TTTATTTTTT-TCTAAATA
1 AATTACTTAATTTTTTAT-TAAATA
59915650 AA
1 AA
59915652 GTAAAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 1 0.05
23 16 0.73
24 5 0.23
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (24 bp):
AATTACTTAATTTTTTATTAAATA
Found at i:59933888 original size:27 final size:27
Alignment explanation
Indices: 59933837--59933891 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
59933827 CATTCCTCTA
59933837 AAACCCTCGGTTTTCCATATATATTTT
1 AAACCCTCGGTTTTCCATATATATTTT
*
59933864 AAACCCT-GGATTGTTCCAT-TGTATTTT
1 AAACCCTCGG-TT-TTCCATATATATTTT
59933891 A
1 A
59933892 TACCATGCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 2 0.08
27 17 0.68
28 6 0.24
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (27 bp):
AAACCCTCGGTTTTCCATATATATTTT
Found at i:59936451 original size:20 final size:19
Alignment explanation
Indices: 59936417--59936455 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
59936407 GAGTTTAGAG
*
59936417 TTTATGATTTTATTATTTA
1 TTTATAATTTTATTATTTA
59936436 TTTATAATTATTATTATTTA
1 TTTATAATT-TTATTATTTA
59936456 GTTGTGCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTATAATTTTATTATTTA
Found at i:59944082 original size:17 final size:16
Alignment explanation
Indices: 59944056--59944092 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
59944046 TAATCTAATT
59944056 TATTTAATATATTTAAA
1 TATTTAATATA-TTAAA
*
59944073 TATTTTATATATTAAA
1 TATTTAATATATTAAA
59944089 TATT
1 TATT
59944093 GATAAATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATTTAATATATTAAA
Found at i:59947580 original size:13 final size:12
Alignment explanation
Indices: 59947556--59947585 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
59947546 AGAAAAGAAC
59947556 AAATATATATAT
1 AAATATATATAT
59947568 AAATATAATATAT
1 AAATAT-ATATAT
59947581 AAATA
1 AAATA
59947586 AACTATGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATATATATAT
Found at i:59949375 original size:50 final size:50
Alignment explanation
Indices: 59949313--59949875 Score: 334
Period size: 50 Copynumber: 11.3 Consensus size: 50
59949303 GATCTGTAAT
* * * ** *
59949313 CTTCAATTTGTTCAACTGCAATGTTGGGGAAACTAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATATCAGGGAAACTAGATCCGCCGTTGTAG
* ** *** * * *
59949363 CTTCAATCTGTTCCACCGCACCGTCAGGG-AAGTAAGATCTGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATATCAGGGAAACT-AGATCCGCCGTTGTAG
* * * * * *
59949413 CTTCAATCTTTTTAATTGCAATGTCAGGAAAACTAGATCCACCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATATCAGGGAAACTAGATCCGCCGTTGTAG
* * * * * * * ** *
59949463 TTTCAATCTATTCCATTGCACT-GCTAAGG-AAGTAAGATTTGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATATC-AGGGAAACT-AGATCCGCCGTTGTAG
* * * * *
59949513 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCACCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATATCAGGGAAACTAGATCCGCCGTTGTAG
* * * * * * *
59949563 CTTCAATCTGTTCCACTGCACTA-CTAAGG-AAGTAAGATCTGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATATC-AGGGAAACT-AGATCCGCCGTTGTAG
* * * * *
59949613 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCTGTCGTTGTAG
1 CTTCAATCTGTTCAATTGCAATATCAGGGAAACTAGATCCGCCGTTGTAG
*** * * * * *
59949663 CTTCAATCTGTTCCGCTGTACTA-CTAAGG-AAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATATC-AGGGAAACT-AGATCCGCCGTTGTAG
* * *
59949713 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTTGTAG
1 CTTCAATCTGTTCAATTGCAATATCAGGGAAACTAGATCCGCCGTTGTAG
*** * * * * *
59949763 CTTCAATCTGTTCCGCTGCACT-GCTAAGG-AAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATATC-AGGGAAACT-AGATCCGCCGTTGTAG
* * * * *
59949813 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCTGCCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATATCAGGGAAACTAGATCCGCCGTTGTAG
59949863 CTTCAATCTGTTC
1 CTTCAATCTGTTC
59949876 CGCTGCACTG
Statistics
Matches: 371, Mismatches: 124, Indels: 36
0.70 0.23 0.07
Matches are distributed among these distances:
49 16 0.04
50 340 0.92
51 15 0.04
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (50 bp):
CTTCAATCTGTTCAATTGCAATATCAGGGAAACTAGATCCGCCGTTGTAG
Found at i:59949446 original size:100 final size:100
Alignment explanation
Indices: 59949339--59949926 Score: 863
Period size: 100 Copynumber: 5.9 Consensus size: 100
59949329 TGCAATGTTG
* * * *
59949339 GGGAAACTAGATCCGCCGTCGTAGCTTCAATCTGTTCCACCGCACCG-TCAGGGAAGTAAGATCT
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACCGCT-AAGGAAGTAAGATCC
*
59949403 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTCA
65 GCCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * * * * * * **
59949439 GGAAAACTAGATCCACCGTCGTAGTTTCAATCTATTCCATTGCACTGCTAAGGAAGTAAGATTTG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACCGCTAAGGAAGTAAGATCCG
59949504 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* ** *
59949539 GGGAAACCAGATCCACCGTCGTAGCTTCAATCTGTTCCACTGCACTACTAAGGAAGTAAGATCTG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACCGCTAAGGAAGTAAGATCCG
59949604 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * * * * **
59949639 GGGAAACCAGATCTGTCGTTGTAGCTTCAATCTGTTCCGCTGTACTACTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACCGCTAAGGAAGTAAGATCCG
59949704 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * *
59949739 GGGAAACCAGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACCGCTAAGGAAGTAAGATCCG
59949804 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * * **
59949839 GGGAAACCAGATCTGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAATAAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACCGCTAAGGAAGTAAGATCCG
59949904 CCGTTGTGGCTTCAATCTTTTTA
66 CCGTTGTGGCTTCAATCTTTTTA
59949927 CTTTTCAACC
Statistics
Matches: 455, Mismatches: 32, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
100 454 1.00
101 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (100 bp):
GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACCGCTAAGGAAGTAAGATCCG
CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
Found at i:59949901 original size:50 final size:50
Alignment explanation
Indices: 59949547--59949921 Score: 213
Period size: 50 Copynumber: 7.5 Consensus size: 50
59949537 CAGGGAAACC
* * * * *
59949547 AGATCCACCGTCGTAGCTTCAATCTGTTCCACTGCACTACTAAGGAAGTA
1 AGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGAAAGTA
* * * **** * * * **
59949597 AGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCAAT-ATCAGGGAAA-CC
1 AGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCT-A-AGAAAGTA
* * * * *
59949647 AGATCTGTCGTTGTAGCTTCAATCTGTTCCGCTGTACTACTAAGGAAGTA
1 AGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGAAAGTA
* * **** * * * **
59949697 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCAAT-ATCAGGGAAA-CC
1 AGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCT-A-AGAAAGTA
*
59949747 AGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAAGTA
1 AGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGAAAGTA
* * **** * * * **
59949797 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCAAT-ATCAGGGAAA-CC
1 AGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCT-A-AGAAAGTA
* * *
59949847 AGATCTGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAATAAAGTA
1 AGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGAAAGTA
*
59949897 AGATCCGCCGTTGTGGCTTCAATCT
1 AGATCCGCCGTTGTAGCTTCAATCT
59949922 TTTTACTTTT
Statistics
Matches: 229, Mismatches: 84, Indels: 24
0.68 0.25 0.07
Matches are distributed among these distances:
49 12 0.05
50 205 0.90
51 12 0.05
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (50 bp):
AGATCCGCCGTTGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGAAAGTA
Found at i:59958016 original size:20 final size:20
Alignment explanation
Indices: 59957991--59958030 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
59957981 TAAAGGTCTT
59957991 TAATGCATATAATGCGATGC
1 TAATGCATATAATGCGATGC
*
59958011 TAATGCATATGATGCGATGC
1 TAATGCATATAATGCGATGC
59958031 ATGAGGTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (20 bp):
TAATGCATATAATGCGATGC
Found at i:59965614 original size:18 final size:19
Alignment explanation
Indices: 59965590--59965639 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
59965580 GTAGACCTAA
*
59965590 AATATTTTAATATTA-TTTT
1 AATATTTAAAT-TTAGTTTT
59965609 -ATATTTAAATTTAGTTTT
1 AATATTTAAATTTAGTTTT
*
59965627 AATATTTGAATTT
1 AATATTTAAATTT
59965640 TTATTTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 3 0.11
18 13 0.48
19 11 0.41
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
AATATTTAAATTTAGTTTT
Found at i:59965708 original size:21 final size:21
Alignment explanation
Indices: 59965675--59965723 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
59965665 GGCTTCAAAA
*
59965675 TTCAATTTCATACCTAAGTTT
1 TTCATTTTCATACCTAAGTTT
* * *
59965696 TTCATTTTGATACTTGAGTTT
1 TTCATTTTCATACCTAAGTTT
59965717 TT-ATTTT
1 TTCATTTT
59965724 TTCTATTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.22, C:0.12, G:0.08, T:0.57
Consensus pattern (21 bp):
TTCATTTTCATACCTAAGTTT
Found at i:59981586 original size:20 final size:20
Alignment explanation
Indices: 59981561--59981600 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
59981551 TAAAGGTCTT
*
59981561 TAATGCATATAATGTGATGC
1 TAATGCATATAATGCGATGC
*
59981581 TAATGCATATGATGCGATGC
1 TAATGCATATAATGCGATGC
59981601 ATGAGGTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (20 bp):
TAATGCATATAATGCGATGC
Found at i:59989124 original size:18 final size:19
Alignment explanation
Indices: 59989100--59989149 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
59989090 GTAGACCTAA
*
59989100 AATATTTTAATATTA-TTTT
1 AATATTTAAAT-TTAGTTTT
59989119 -ATATTTAAATTTAGTTTT
1 AATATTTAAATTTAGTTTT
*
59989137 AATATTTGAATTT
1 AATATTTAAATTT
59989150 TTATTTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 3 0.11
18 13 0.48
19 11 0.41
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
AATATTTAAATTTAGTTTT
Found at i:59989220 original size:22 final size:22
Alignment explanation
Indices: 59989186--59989230 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
59989176 GGCTTCAAAA
59989186 TTCAATTTCATACCTAAGTTTT
1 TTCAATTTCATACCTAAGTTTT
* * * *
59989208 TTCATTTTGATACTTGAGTTTT
1 TTCAATTTCATACCTAAGTTTT
59989230 T
1 T
59989231 ATTTTTTCTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.56
Consensus pattern (22 bp):
TTCAATTTCATACCTAAGTTTT
Found at i:59995672 original size:40 final size:40
Alignment explanation
Indices: 59995621--59995707 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
59995611 AATTATGGAA
* * *
59995621 TACTGAATATTGTTTTG-AGTACTG-AGTTGAATTGTGAAGT
1 TACTGAATATTGTTATGTA-TACTGCA-TTGAACTGTGAAAT
59995661 TACTGAATATTGTTATGTATACTGCATTGAACTGTGAAAT
1 TACTGAATATTGTTATGTATACTGCATTGAACTGTGAAAT
59995701 TACTGAA
1 TACTGAA
59995708 GTAATGAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 40 0.95
41 2 0.05
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (40 bp):
TACTGAATATTGTTATGTATACTGCATTGAACTGTGAAAT
Found at i:59995965 original size:33 final size:33
Alignment explanation
Indices: 59995913--59995982 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
59995903 CGACTACTGT
*
59995913 TACTGTTACCGATTTGGCACTTTGTGTGTCGAA
1 TACTGTTACCGATTCGGCACTTTGTGTGTCGAA
* *
59995946 TACTGTTACTGATTCGGCACTTTGTTTGTCGAA
1 TACTGTTACCGATTCGGCACTTTGTGTGTCGAA
59995979 TACT
1 TACT
59995983 ATTATTGTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (33 bp):
TACTGTTACCGATTCGGCACTTTGTGTGTCGAA
Found at i:59995997 original size:45 final size:46
Alignment explanation
Indices: 59995946--59996135 Score: 210
Period size: 45 Copynumber: 4.2 Consensus size: 46
59995936 GTGTGTCGAA
* * **
59995946 TACTGTTACT-GATTCGGCACTTTGTTTGTCGAATACTATTATTGT
1 TACTGTTACTAGATTCGACACTTTGTGTGTCGAATACTATTACCGT
* * *
59995991 TACTGTTAC-CGATTCGACACTTTGTGTATCGAATACTGTTACCGT
1 TACTGTTACTAGATTCGACACTTTGTGTGTCGAATACTATTACCGT
* * * * *
59996036 TACTATTA-TCGATTCGACACTTTGTGTGCCAAATACTGTTACCG-
1 TACTGTTACTAGATTCGACACTTTGTGTGTCGAATACTATTACCGT
* * *
59996080 TACTGTTA-TAGATTCGACACTTTGTGCGTTGAATACTATTACTGT
1 TACTGTTACTAGATTCGACACTTTGTGTGTCGAATACTATTACCGT
59996125 TACTGTTACTA
1 TACTGTTACTA
59996136 CTACCGTTAC
Statistics
Matches: 123, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
44 36 0.29
45 85 0.69
46 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (46 bp):
TACTGTTACTAGATTCGACACTTTGTGTGTCGAATACTATTACCGT
Found at i:59996144 original size:18 final size:19
Alignment explanation
Indices: 59996113--59996153 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
59996103 GTGCGTTGAA
* *
59996113 TACTATTACTGTTACTG-T
1 TACTACTACCGTTACTGAT
59996131 TACTACTACCGTTACTGAT
1 TACTACTACCGTTACTGAT
59996150 TACT
1 TACT
59996154 GTTTAGGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (19 bp):
TACTACTACCGTTACTGAT
Found at i:59997733 original size:20 final size:20
Alignment explanation
Indices: 59997708--59997750 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
59997698 AATCATTTAA
59997708 AAATTA-ATTTAGTAATATTT
1 AAATTATATTTA-TAATATTT
*
59997728 AAATTATATTTATAATTTTT
1 AAATTATATTTATAATATTT
59997748 AAA
1 AAA
59997751 AAATAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
AAATTATATTTATAATATTT
Found at i:59997760 original size:20 final size:20
Alignment explanation
Indices: 59997702--59997761 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
59997692 TTATGAAATC
*
59997702 ATTTAAAAATTAATTTAGTAAT
1 ATTTAAAAAATAA-TTA-TAAT
** *
59997724 ATTTAAATTATATTTATAAT
1 ATTTAAAAAATAATTATAAT
*
59997744 TTTTAAAAAATAATTATA
1 ATTTAAAAAATAATTATA
59997762 TAGATTTAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
20 18 0.60
21 3 0.10
22 9 0.30
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTTAAAAAATAATTATAAT
Found at i:60007225 original size:15 final size:14
Alignment explanation
Indices: 60007204--60007239 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
60007194 ATAATCATTA
*
60007204 ATAATTATCTTAAT
1 ATAATTATCCTAAT
60007218 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
60007233 ATAATTA
1 ATAATTA
60007240 AAACAGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:60010773 original size:13 final size:13
Alignment explanation
Indices: 60010757--60010783 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
60010747 CCATATTAGT
60010757 TTTTTATATATAA
1 TTTTTATATATAA
60010770 TTTTTATATATAA
1 TTTTTATATATAA
60010783 T
1 T
60010784 ACATCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTTTATATATAA
Found at i:60014219 original size:29 final size:29
Alignment explanation
Indices: 60014184--60014242 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
60014174 TCTATTATTC
60014184 TCTCAATTTCCT-TCCAAATTT-CTCTCAAA
1 TCTCAATTTCCTCT-C-AATTTCCTCTCAAA
*
60014213 TCTCAATTTGCTCTCAATTTCCTCTCAAA
1 TCTCAATTTCCTCTCAATTTCCTCTCAAA
60014242 T
1 T
60014243 TTCTCTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 5 0.19
29 21 0.78
30 1 0.04
ACGTcount: A:0.25, C:0.31, G:0.02, T:0.42
Consensus pattern (29 bp):
TCTCAATTTCCTCTCAATTTCCTCTCAAA
Found at i:60014962 original size:230 final size:229
Alignment explanation
Indices: 60014529--60015086 Score: 924
Period size: 230 Copynumber: 2.4 Consensus size: 229
60014519 AAAAACACCA
* * * *
60014529 AAACCCAAATTTAATTCATATTTTCTTAAAAAATAATAAACACGAAAACTAATCCAATTTTAAAA
1 AAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAACTAATCCAATTTTGAAA
* *
60014594 AATTTATAAATAAATTAATTGACAAACCCTAAACTCTAAACCCTAACTTGTTTGATTTTTCCTTA
66 AATTTTTAAATAATTTAATTGACAAACCCTAAACTCTAAACCCTAACTTGTTTGATTTTTCCTTA
* *
60014659 AAAACCCTTAACTTAAAAACACCAAAACCCTAACAAAAACCCTAACCCTAACCCTAATCTAATTT
131 AAAACCCTTAACCTAAAAACACCAAAACACTAACAAAAACCCTAACCCTAACCCTAATCTAATTT
*
60014724 TTAAATTTTTTAAATTAAATTACTCAAGTAACCCT
196 TAAAATTTTTT-AATTAAATTACTCAAGTAACCCT
* *
60014759 AAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACCAAAACTTATCCAATTTTGAAA
1 AAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAACTAATCCAATTTTGAAA
**
60014824 TTTTTTTAAATAATTTAATTGACAAACCCTAAACTCTAAACCCTAACTTGTTTG-TTTTTCCTTA
66 AATTTTTAAATAATTTAATTGACAAACCCTAAACTCTAAACCCTAACTTGTTTGATTTTTCCTTA
*
60014888 AAAACCCTTAACCT-AAAACACCAAAACACTTACAAAAACCCTAACCCTAACCCTAATCTAACTT
131 AAAACCCTTAACCTAAAAACACCAAAACACTAACAAAAACCCTAACCCTAACCCTAATCTAA-TT
60014952 TTAAAAATTTTTTAATTAAATTACTCAAGTAACCCT
195 TT-AAAATTTTTTAATTAAATTACTCAAGTAACCCT
* *
60014988 AAACCCTAATTTAATTGCTTTTTTCTT-AAAAATAATAAACATGAAAACTAATCCAATTTTGAAA
1 AAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAACTAATCCAATTTTGAAA
60015052 AATTTTTAAATAATTTAATTGACAAACCCTAAACT
66 AATTTTTAAATAATTTAATTGACAAACCCTAAACT
60015087 AGAGGTGTTC
Statistics
Matches: 306, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
228 112 0.37
229 76 0.25
230 118 0.39
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.34
Consensus pattern (229 bp):
AAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAAACTAATCCAATTTTGAAA
AATTTTTAAATAATTTAATTGACAAACCCTAAACTCTAAACCCTAACTTGTTTGATTTTTCCTTA
AAAACCCTTAACCTAAAAACACCAAAACACTAACAAAAACCCTAACCCTAACCCTAATCTAATTT
TAAAATTTTTTAATTAAATTACTCAAGTAACCCT
Found at i:60015570 original size:14 final size:14
Alignment explanation
Indices: 60015551--60015590 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
60015541 ATTTAATTTT
60015551 AACCCTAAACCCCA
1 AACCCTAAACCCCA
60015565 AACCCTAAACCCCA
1 AACCCTAAACCCCA
* *
60015579 AATCTTAAACCC
1 AACCCTAAACCC
60015591 TAAAATCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.42, C:0.45, G:0.00, T:0.12
Consensus pattern (14 bp):
AACCCTAAACCCCA
Found at i:60015594 original size:7 final size:7
Alignment explanation
Indices: 60015551--60015594 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
60015541 ATTTAATTTT
60015551 AACCCTA
1 AACCCTA
*
60015558 AACCCCA
1 AACCCTA
60015565 AACCCTA
1 AACCCTA
*
60015572 AACCCCA
1 AACCCTA
* *
60015579 AATCTTA
1 AACCCTA
60015586 AACCCTA
1 AACCCTA
60015593 AA
1 AA
60015595 ATCCAAAAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.45, C:0.41, G:0.00, T:0.14
Consensus pattern (7 bp):
AACCCTA
Found at i:60017303 original size:6 final size:6
Alignment explanation
Indices: 60017287--60017318 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
60017277 ACATTAGTGA
60017287 ATAATAT ATAAAT ATAAAT ATAAAT ATAAAT A
1 ATAA-AT ATAAAT ATAAAT ATAAAT ATAAAT A
60017319 ATTATATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 21 0.84
7 4 0.16
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
ATAAAT
Found at i:60017366 original size:29 final size:29
Alignment explanation
Indices: 60017333--60017391 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
60017323 TATTTAAATT
60017333 ATTAGATATGAAAAACCAATAAGATTATG
1 ATTAGATATGAAAAACCAATAAGATTATG
*
60017362 ATTAGATATGAAAAACTAATAAGATTATG
1 ATTAGATATGAAAAACCAATAAGATTATG
60017391 A
1 A
60017392 AAACCAGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.29
Consensus pattern (29 bp):
ATTAGATATGAAAAACCAATAAGATTATG
Found at i:60022706 original size:21 final size:21
Alignment explanation
Indices: 60022681--60022721 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
60022671 AAACCAATCG
60022681 TTTAATCAC-TTTAAAACACGA
1 TTTAAT-ACTTTTAAAACACGA
60022702 TTTAATACTTTTAAAACACG
1 TTTAATACTTTTAAAACACG
60022722 TCAAAACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (21 bp):
TTTAATACTTTTAAAACACGA
Found at i:60027255 original size:26 final size:25
Alignment explanation
Indices: 60027211--60027278 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 25
60027201 AAACCCTAAT
*
60027211 TTTTCCTTTCTTTCTTC-CCCTTTTTC
1 TTTT-CTTTCTTT-TTCTCCCTGTTTC
60027237 TTTTCTTTCTTTTTCTCCCTGTTTC
1 TTTTCTTTCTTTTTCTCCCTGTTTC
* *
60027262 GTTTCTATTCTGTTTCT
1 TTTTCT-TTCTTTTTCT
60027279 TTTATTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 3 0.08
25 21 0.57
26 13 0.35
ACGTcount: A:0.01, C:0.28, G:0.04, T:0.66
Consensus pattern (25 bp):
TTTTCTTTCTTTTTCTCCCTGTTTC
Found at i:60027354 original size:8 final size:8
Alignment explanation
Indices: 60027338--60027369 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
60027328 ATAATTAAGA
60027338 TATAATAT
1 TATAATAT
*
60027346 TAAAATAT
1 TATAATAT
60027354 TATAATAT
1 TATAATAT
60027362 TATAATAT
1 TATAATAT
60027370 ATATTTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
TATAATAT
Found at i:60027359 original size:16 final size:16
Alignment explanation
Indices: 60027298--60027369 Score: 56
Period size: 16 Copynumber: 4.2 Consensus size: 16
60027288 TATATTTACT
60027298 TATTATAATATATAAAA
1 TATTATAATAT-TAAAA
*
60027315 TAATAT-ATACTTAATAA
1 TATTATAATA-TTAA-AA
*
60027332 TTAAGATATAATATTAAAA
1 -T-A-TTATAATATTAAAA
*
60027351 TATTATAATATTATAA
1 TATTATAATATTAAAA
60027367 TAT
1 TAT
60027370 ATATTTTTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
16 21 0.46
17 9 0.20
18 2 0.04
19 3 0.07
20 8 0.17
21 3 0.07
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (16 bp):
TATTATAATATTAAAA
Found at i:60029533 original size:17 final size:17
Alignment explanation
Indices: 60029511--60029543 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
60029501 TTTTCAGAAA
60029511 ATTTTAATATTTTTTAT
1 ATTTTAATATTTTTTAT
60029528 ATTTTAATATTTTTTA
1 ATTTTAATATTTTTTA
60029544 AAAAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
ATTTTAATATTTTTTAT
Found at i:60030102 original size:15 final size:15
Alignment explanation
Indices: 60030082--60030137 Score: 54
Period size: 14 Copynumber: 4.2 Consensus size: 15
60030072 TACATGAATT
60030082 TTTAAAATAATATAA
1 TTTAAAATAATATAA
60030097 TTTAAAAT-ATAT-A
1 TTTAAAATAATATAA
*
60030110 -TT--ATTAATA-AA
1 TTTAAAATAATATAA
60030121 TTTAAAATAAT-TAA
1 TTTAAAATAATATAA
60030135 TTT
1 TTT
60030138 TATTATTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
10 2 0.06
11 4 0.12
12 4 0.12
13 1 0.03
14 14 0.42
15 8 0.24
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TTTAAAATAATATAA
Found at i:60030219 original size:25 final size:26
Alignment explanation
Indices: 60030190--60030240 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
60030180 AAACTTATTA
*
60030190 TTTAAGTATAA-AATTAAAACCAAAT
1 TTTAAATATAATAATTAAAACCAAAT
*
60030215 TTTAAATATAATAATTAAAATCAAAT
1 TTTAAATATAATAATTAAAACCAAAT
60030241 CTTATTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (26 bp):
TTTAAATATAATAATTAAAACCAAAT
Found at i:60038849 original size:12 final size:12
Alignment explanation
Indices: 60038832--60038856 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60038822 GGTGTTCATT
60038832 CGGTTAACCGAC
1 CGGTTAACCGAC
60038844 CGGTTAACCGAC
1 CGGTTAACCGAC
60038856 C
1 C
60038857 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:60039031 original size:9 final size:9
Alignment explanation
Indices: 60039017--60039077 Score: 104
Period size: 9 Copynumber: 6.8 Consensus size: 9
60039007 TTTGGTTAAA
60039017 AATTACCCG
1 AATTACCCG
60039026 AATTACCCG
1 AATTACCCG
60039035 AATTACCCG
1 AATTACCCG
60039044 AATTACCCG
1 AATTACCCG
*
60039053 AATTAACCG
1 AATTACCCG
*
60039062 AATTAACCG
1 AATTACCCG
60039071 AATTACC
1 AATTACC
60039078 GAAAAATACC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.38, C:0.30, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:60044399 original size:46 final size:46
Alignment explanation
Indices: 60044335--60044428 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
60044325 CTTCACTCAT
60044335 CACACACAACAACCTTGATGCTCCTAAGAGGGACCCAGATTATTCA
1 CACACACAACAACCTTGATGCTCCTAAGAGGGACCCAGATTATTCA
*
60044381 CACACACAACAACCTTGATGCTGCTAAGAGGGACCCAGATTATTCA
1 CACACACAACAACCTTGATGCTCCTAAGAGGGACCCAGATTATTCA
60044427 CA
1 CA
60044429 TTCTTTTGAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.35, C:0.30, G:0.16, T:0.19
Consensus pattern (46 bp):
CACACACAACAACCTTGATGCTCCTAAGAGGGACCCAGATTATTCA
Found at i:60047808 original size:12 final size:12
Alignment explanation
Indices: 60047761--60047808 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
60047751 AAGCTGCTCA
60047761 TATTAGTTGTTT
1 TATTAGTTGTTT
* *
60047773 TATTACTTATTCT
1 TATTAGTTGTT-T
* *
60047786 TGTTAGCTGTTT
1 TATTAGTTGTTT
60047798 TATTAGTTGTT
1 TATTAGTTGTT
60047809 AATGATGTAT
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
12 19 0.70
13 8 0.30
ACGTcount: A:0.17, C:0.06, G:0.15, T:0.62
Consensus pattern (12 bp):
TATTAGTTGTTT
Found at i:60053748 original size:6 final size:6
Alignment explanation
Indices: 60053737--60053761 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
60053727 AAGGTTGATC
60053737 GTTGAA GTTGAA GTTGAA GTTGAA G
1 GTTGAA GTTGAA GTTGAA GTTGAA G
60053762 AAGGAGAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (6 bp):
GTTGAA
Found at i:60056294 original size:13 final size:13
Alignment explanation
Indices: 60056276--60056300 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60056266 TTAAAAGAAC
60056276 TTATATATAATAT
1 TTATATATAATAT
60056289 TTATATATAATA
1 TTATATATAATA
60056301 AAATTTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTATATATAATAT
Found at i:60075536 original size:44 final size:44
Alignment explanation
Indices: 60075398--60075624 Score: 156
Period size: 44 Copynumber: 5.2 Consensus size: 44
60075388 AATAGTAGAT
* * *
60075398 CTTGCCTTCCTGCGTAGAAAGCGAACCAGATCGAAGACACCAAC
1 CTTGCCTTCCTGCGTAGACAGCGAAGCAGATCGAAGACACCAGC
* * * * * * * * * *
60075442 CTCGCCTCCCT-CGGTTG-CAGTGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTTCCTGC-GTAGACAGCGAAGCAGATCGAAGACACCAG-C
* *
60075486 CTTGCCTTCATGCGTAGACAGCGAAGCAGATCAAAGACACCAGC
1 CTTGCCTTCCTGCGTAGACAGCGAAGCAGATCGAAGACACCAGC
* * * * * * * * *
60075530 CTTGCCTCCCT-CGGTTG-CAGTGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTTCCTGC-GTAGACAGCGAAGCAGATCGAAGACACCAG-C
*
60075574 CTTGCCTTCCTGCGTAGACAGCGAAGCAGATCGAAGACATCAGC
1 CTTGCCTTCCTGCGTAGACAGCGAAGCAGATCGAAGACACCAGC
*
60075618 CTCGCCT
1 CTTGCCT
60075625 CCCTCGCTTG
Statistics
Matches: 129, Mismatches: 46, Indels: 16
0.68 0.24 0.08
Matches are distributed among these distances:
43 36 0.28
44 54 0.42
45 39 0.30
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (44 bp):
CTTGCCTTCCTGCGTAGACAGCGAAGCAGATCGAAGACACCAGC
Found at i:60075653 original size:43 final size:43
Alignment explanation
Indices: 60075430--60075653 Score: 114
Period size: 44 Copynumber: 5.1 Consensus size: 43
60075420 GAACCAGATC
* * * *
60075430 GAAGACACCAACCTCGCCTCCCTCGGTTGCAGTGGAGCAGGTT
1 GAAGACACCAGCCTTGCCTCCCTCGCTTGCAGTAGAGCAGGTT
* * * * * * * * *
60075473 GAAGATAGCAGATCTTGCCTTCAT-GCGTAGACAG-CGAAGCAGATC
1 GAAGACACCAG-CCTTGCCTCCCTCGC-TTG-CAGTAG-AGCAGGTT
* * *
60075518 AAAGACACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTT
1 GAAGACACCAGCCTTGCCTCCCTCGCTTGCAGTAGAGCAGGTT
* * * * * * * *
60075561 GAAGATAGCAGATCTTGCCTTCCT-GCGTAGACAG-CGAAGCAGATC
1 GAAGACACCAG-CCTTGCCTCCCTCGC-TTG-CAGTAG-AGCAGGTT
* *
60075606 GAAGACATCAGCCTCGCCTCCCTCGCTTGCAGTAGAGCAGGTT
1 GAAGACACCAGCCTTGCCTCCCTCGCTTGCAGTAGAGCAGGTT
60075649 GAAGA
1 GAAGA
60075654 TAGCAGATAT
Statistics
Matches: 127, Mismatches: 42, Indels: 24
0.66 0.22 0.12
Matches are distributed among these distances:
43 41 0.32
44 48 0.38
45 38 0.30
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (43 bp):
GAAGACACCAGCCTTGCCTCCCTCGCTTGCAGTAGAGCAGGTT
Found at i:60075692 original size:88 final size:88
Alignment explanation
Indices: 60075360--60075673 Score: 511
Period size: 88 Copynumber: 3.6 Consensus size: 88
60075350 ATTTTCTTTT
* * * *
60075360 TCCCTCGGTTGCAGTGGAGCAGGTTGAAAATAGTAGATCTTGCCTTCCTGCGTAGAAAGCGAACC
1 TCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCGTAGACAGCGAAGC
*
60075425 AGATCGAAGACACCAACCTCGCC
66 AGATCGAAGACACCAGCCTCGCC
*
60075448 TCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCATGCGTAGACAGCGAAGC
1 TCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCGTAGACAGCGAAGC
* *
60075513 AGATCAAAGACACCAGCCTTGCC
66 AGATCGAAGACACCAGCCTCGCC
60075536 TCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCGTAGACAGCGAAGC
1 TCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCGTAGACAGCGAAGC
*
60075601 AGATCGAAGACATCAGCCTCGCC
66 AGATCGAAGACACCAGCCTCGCC
* * * *
60075624 TCCCTCGCTTGCAGTAGAGCAGGTTGAAGATAGCAGATATTGTCTTCCTG
1 TCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTG
60075674 TACTGACGAC
Statistics
Matches: 210, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 210 1.00
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (88 bp):
TCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCGTAGACAGCGAAGC
AGATCGAAGACACCAGCCTCGCC
Found at i:60075853 original size:128 final size:128
Alignment explanation
Indices: 60075686--60076399 Score: 943
Period size: 128 Copynumber: 5.6 Consensus size: 128
60075676 CTGACGACAA
** * *
60075686 AGCAGATTAAAGACGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCGCAAGTCCTA
1 AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
*
60075751 TATCCCTGGGCAGCAGTGGAATATGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG
66 TATCCCTGGGCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG
* * * *
60075814 AGCAGATCGAAGATGGCGAATCTTATCTTCAAGTGTAAGGAAGCATATTTAAGCCGCAAGTACTA
1 AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* * *
60075879 TATCCCTGGGCAGTAGTAGAATATGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG
66 TATCCCTGGGCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG
*
60075942 AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCGCAAGTCCTA
1 AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* *
60076007 TATCCCTGGGCAGCAATGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGG
66 TATCCCTGGGCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG
* * * * *
60076070 AGCAGATTGAAGACGGCAAATCTTATTTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAATCCTA
1 AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* * * * * *
60076135 TATCCCTAGGCAGCAGTGGAATGGGTTGAAAATTACAGATCTCGCCTCCCTAAGAAGTAGCGG
66 TATCCCTGGGCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG
*
60076198 AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTT
1 AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
* ** ** ** * * * * *
60076263 TCTCCCTGAGGTTGCAGTGGAGCAGACT--AAGTAAGCAGGTCTTATCCCCCTGAAGTTGCAGT-
66 TATCCCTG-GGCAGCAGTGGAATAGGTTGGAAATTA-CAGATCTTGTCTCCCT-AA---GCAGTA
60076325 G-GG
125 GCGG
** * *
60076328 A-CAGATTAAAGACGGCAAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTT
1 AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
*
60076392 TCTCCCTG
66 TATCCCTG
60076400 AAGTTGCAAT
Statistics
Matches: 524, Mismatches: 56, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
127 4 0.01
128 430 0.82
129 82 0.16
130 3 0.01
131 1 0.00
132 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (128 bp):
AGCAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTA
TATCCCTGGGCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGG
Found at i:60078301 original size:22 final size:22
Alignment explanation
Indices: 60078276--60078320 Score: 76
Period size: 20 Copynumber: 2.1 Consensus size: 22
60078266 AACCCTTTTT
60078276 TATATATATTA-TTATA-TAAA
1 TATATATATTATTTATATTAAA
60078296 TATATATATTATTTATATTAAA
1 TATATATATTATTTATATTAAA
60078318 TAT
1 TAT
60078321 TTCATTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 11 0.48
21 5 0.22
22 7 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TATATATATTATTTATATTAAA
Found at i:60078425 original size:19 final size:19
Alignment explanation
Indices: 60078378--60078427 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
60078368 TTTGTGATTT
*
60078378 ATTCTTTTTTTATTTTATT
1 ATTCTTTTTTTATTTTATA
60078397 ATT-TTATTTTT-TTCTTATA
1 ATTCTT-TTTTTATT-TTATA
60078416 ATTCTTTTTTTA
1 ATTCTTTTTTTA
60078428 AAATTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 4 0.15
19 20 0.77
20 2 0.08
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (19 bp):
ATTCTTTTTTTATTTTATA
Found at i:60105683 original size:33 final size:35
Alignment explanation
Indices: 60105622--60105687 Score: 100
Period size: 33 Copynumber: 1.9 Consensus size: 35
60105612 TAACAGTCTG
*
60105622 TGATTCTCAAAAAGAAAATCACTAACAAATTTCGA
1 TGATTCTCAAAAAGAAAATCACGAACAAATTTCGA
*
60105657 TGATTCTC-AAAAG-AAATCACGGACAAATTTC
1 TGATTCTCAAAAAGAAAATCACGAACAAATTTC
60105688 AGCCACTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 16 0.55
34 5 0.17
35 8 0.28
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.26
Consensus pattern (35 bp):
TGATTCTCAAAAAGAAAATCACGAACAAATTTCGA
Found at i:60112585 original size:11 final size:11
Alignment explanation
Indices: 60112569--60112603 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
60112559 CCGGATTCCC
60112569 CTCCCTTCTCT
1 CTCCCTTCTCT
60112580 CTCCCTTCTCT
1 CTCCCTTCTCT
60112591 CTTCCC-TCTCT
1 C-TCCCTTCTCT
60112602 CT
1 CT
60112604 TTTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:60113128 original size:23 final size:23
Alignment explanation
Indices: 60113084--60113129 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
60113074 TATATACCAT
*
60113084 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
60113107 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
60113130 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:60113396 original size:19 final size:19
Alignment explanation
Indices: 60113361--60113397 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
60113351 ATATATTACC
**
60113361 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
60113380 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
60113398 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:60115599 original size:19 final size:20
Alignment explanation
Indices: 60115559--60115602 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
60115549 GTTTCTTTTG
* *
60115559 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
60115578 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
60115597 GCATTA
1 GCATTA
60115603 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:60119878 original size:86 final size:86
Alignment explanation
Indices: 60119733--60119996 Score: 393
Period size: 86 Copynumber: 3.1 Consensus size: 86
60119723 AGTAAAAATT
* * * * *
60119733 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGTTATCAGATTTTGCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
60119798 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * *
60119819 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
*
60119884 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* *
60119905 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCT
1 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
* *
60119970 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
*
60119992 AAAGA
1 GAAGA
60119997 TGGCAGATTT
Statistics
Matches: 159, Mismatches: 18, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
86 139 0.87
87 20 0.13
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:60120071 original size:45 final size:44
Alignment explanation
Indices: 60120020--60120178 Score: 115
Period size: 45 Copynumber: 3.4 Consensus size: 44
60120010 CTCCCTGACT
*
60120020 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTG
1 ACAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTG-ATTTG
* * * * * * *
60120065 ACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTTCCTGA-CT-
1 ACAGTGGAATACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGATTTG
*
60120115 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTG
1 ACAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTG-ATTTG
* *
60120160 GCAGTGGAATAGATTGAAG
1 ACAGTGGAATACATTGAAG
60120179 ATTGCAGATC
Statistics
Matches: 84, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
42 10 0.12
43 2 0.02
44 1 0.01
45 33 0.39
46 3 0.04
47 1 0.01
48 1 0.01
49 3 0.04
50 17 0.20
51 1 0.01
52 2 0.02
53 10 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGATTTG
Found at i:60120150 original size:95 final size:95
Alignment explanation
Indices: 60119987--60122297 Score: 815
Period size: 95 Copynumber: 25.0 Consensus size: 95
60119977 GCAGCGAAGC
60119987 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
60120052 CTCCCTGCATTTGACAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
60120082 AGATCGAAGATGGCAGATTTTACCTTCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60120147 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * * * ** ** ** *
60120177 AGAT------T-GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ACT
* * *** * *
60120235 TTACCTCCCTG-A--CCACAGTGGAGTACATTGA
62 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * ** * *
60120266 AG--C--CGAT---A-ATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATC
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAAC
** * * * *
60120323 T-TGCCTTCCTGTATTTGGTAG-CG---A-A--GC
61 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
60120350 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60120415 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
60120445 AGATCAAAGATGGCATATTTTACCTCCCTGACTACAGTGGAGTACATTGAATCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
60120510 CTCCCTGCATTTGACAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
*
60120540 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60120605 CTCCCTGTATTTGGCAGTGGAATAGATT--
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * * * * ** ** ** *
60120633 -G---AAA-ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ACT
* * *** * *
60120693 TTACCTCCCTG-A--CCACAGTGGAGTACATTGA
62 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * ** * *
60120724 AG--C--CGAT---A-ATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATC
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAAC
** * * *
60120781 T-TGCCTTCCTGTATTTGGCAG-CG---A-A--GC
61 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
60120808 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
60120873 CTCCCTGTATTTGGCAGTGGAATAGATTAA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
60120903 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACA-TGGGAGTACATTAAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGT-GGAGTACATTGAAGCCGATAACTCTA
* *
60120967 TCTCTCTGCATTTGGCAGTGGAATAGATTGA
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
60120998 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACA-TGGGAGTACATTGAAGCCGATAATTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGT-GGAGTACATTGAAGCCGATAACTCTA
60121062 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * * * ** ** ** *
60121093 AGAT------T-GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ACT
* * * * * *
60121151 TTACCTCCCTG-A-CT-ACAGTGGAGTACATTGA
62 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * * *
60121182 AG--C--CGAT---A-ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATG
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG--C--CGAT-
* * * * * * *
60121239 GCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGA
58 --A-ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * * * *
60121277 AG--C--CGAT---A-ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATCAAAGATG
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG--C--CGAT-
* * * * * *
60121334 GCAGATTTTA-CTTCCCTG-A-CT-ACA-TGGGAGTACATT-A
58 --A-ACTCTATC-TCCCTGTATTTGGCAGT-GGAATAGATTGA
* * * * * * * * * * *
60121371 A-AGC--CGAT---A-ACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATG
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG--C--CGAT-
* * * * * *
60121429 GCAGATTTTA-CTTCCCTG-A-CT-ACA-TGGGAGTACATTGA
58 --A-ACTCTATC-TCCCTGTATTTGGCAGT-GGAATAGATTGA
* * * * * * * * ** * *
60121467 AG--C--CGAT---A-ATTCTATCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATC
1 AGATCAAAGATGGCAGATTTTACCTCCCT-GA-CT-ACAGTGGAGTACATTGAAG-CCG-ATAAC
** * * *
60121524 T-TGCCTTCCTGTATTTGGCAG-CG---A-A--GC
61 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
60121551 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60121616 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
60121646 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
60121711 CTCCCTGCATTTGACAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
*
60121741 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
60121806 CTTCCTGTATTTGGCAGTGGAATAGATT--
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * * * * ** ** ** *
60121834 -G---AAA-ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ACT
* * *** * *
60121894 TTACCTCCCTG-A--CCACAGTGGAGTACATTGA
62 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * ** * *
60121925 AG--C--CGAT---A-ATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATC
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAAC
** * * *
60121982 T-TGCCTTCCTGTATTTGGCAG-CG---A-A--GC
61 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
60122009 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60122074 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
60122104 AGATCAAAGATGGTAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
60122169 CTCTCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
*
60122199 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACA-TGGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGT-GGAGTACATTGAAGCCGATAACTCTA
*
60122263 TCTCCCTGTATCTGGCAGTGGAATAGATTGA
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
60122294 AGAT
1 AGAT
60122298 TGTAGATCTT
Statistics
Matches: 1771, Mismatches: 309, Indels: 272
0.75 0.13 0.12
Matches are distributed among these distances:
84 12 0.01
86 8 0.00
87 20 0.01
88 288 0.16
89 152 0.09
90 18 0.01
91 79 0.04
92 105 0.06
93 5 0.00
94 6 0.00
95 1076 0.61
96 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:60120209 original size:46 final size:46
Alignment explanation
Indices: 60120147--60120340 Score: 143
Period size: 46 Copynumber: 4.3 Consensus size: 46
60120137 ATAACTCTAT
60120147 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
60120193 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * ** *
60120239 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCT-TGC
60120281 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
*
60120327 CTTCCTGTATTTGG
1 CTCCCTGTATTTGG
60120341 TAGCGAAGCA
Statistics
Matches: 105, Mismatches: 31, Indels: 24
0.66 0.19 0.15
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 12 0.11
44 4 0.04
45 23 0.22
46 55 0.52
47 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
Found at i:60120236 original size:134 final size:134
Alignment explanation
Indices: 60120082--60120448 Score: 680
Period size: 134 Copynumber: 2.7 Consensus size: 134
60120072 AATAGATTGA
* *
60120082 AGATCGAAGATGGCAGATTTTACCTTCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60120147 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
60120212 AAGC
131 AAGC
* *
60120216 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
60120281 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGTAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
60120346 AAGC
131 AAGC
*
60120350 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60120415 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
60120449 CAAAGATGGC
Statistics
Matches: 225, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
134 225 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:60120494 original size:50 final size:48
Alignment explanation
Indices: 60120429--60120591 Score: 140
Period size: 50 Copynumber: 3.4 Consensus size: 48
60120419 CTGTATTTGG
*
60120429 CAGTGGAATAGATTGAAGATCAAAGATGGCATATTTTACCTCCCTGACTA
1 CAGTGGAATACATTGAAGATC-AAGATGGCA-ATTTTACCTCCCTGACTA
* * * * * *
60120479 CAGTGGAGTACATTG-A-ATC-CGAT---AACTCTATCTCCCTGCATTTGA
1 CAGTGGAATACATTGAAGATCAAGATGGCAATTTTACCTCCCTG-A-CT-A
*
60120524 CAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTA
1 CAGTGGAATACATTGAAGATC-AAGATGGCA-ATTTTACCTCCCTGACTA
*
60120574 CAGTGGAGTACATTGAAG
1 CAGTGGAATACATTGAAG
60120592 CCGATAACTC
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
42 11 0.13
43 2 0.02
44 1 0.01
45 14 0.16
46 4 0.05
47 3 0.03
48 3 0.03
49 4 0.05
50 30 0.35
51 1 0.01
52 2 0.02
53 11 0.13
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (48 bp):
CAGTGGAATACATTGAAGATCAAGATGGCAATTTTACCTCCCTGACTA
Found at i:60120529 original size:45 final size:44
Alignment explanation
Indices: 60120478--60120635 Score: 113
Period size: 45 Copynumber: 3.4 Consensus size: 44
60120468 CTCCCTGACT
*
60120478 ACAGTGGAGTACATTGAATCCGATAACTCTATCTCCCTGCATTTG
1 ACAGTGGAATACATTGAATCCGATAACTCTATCTCCCTG-ATTTG
* * * * * *
60120523 ACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGA-CT-
1 ACAGTGGAATACATTG-A-ATC--CGAT---A-ACTCTATCTCCCTGATTTG
* *
60120573 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTG
1 ACAGTGGAATACATTGAATCCGATAACTCTATCTCCCTG-ATTTG
* *
60120618 GCAGTGGAATAGATTGAA
1 ACAGTGGAATACATTGAA
60120636 AATTGCAGAT
Statistics
Matches: 84, Mismatches: 18, Indels: 22
0.68 0.15 0.18
Matches are distributed among these distances:
42 11 0.13
43 2 0.02
44 1 0.01
45 29 0.35
46 4 0.05
47 3 0.04
48 2 0.02
49 4 0.05
50 14 0.17
51 1 0.01
52 2 0.02
53 11 0.13
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
ACAGTGGAATACATTGAATCCGATAACTCTATCTCCCTGATTTG
Found at i:60120780 original size:134 final size:134
Alignment explanation
Indices: 60120540--60120906 Score: 689
Period size: 134 Copynumber: 2.7 Consensus size: 134
60120530 AATAGATTGA
*
60120540 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
60120605 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
60120670 AAGC
131 AAGC
* *
60120674 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60120739 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
60120804 AAGC
131 AAGC
60120808 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
60120873 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGAT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
60120907 CAAAGATGGC
Statistics
Matches: 226, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
134 226 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:60120801 original size:46 final size:46
Alignment explanation
Indices: 60120605--60120801 Score: 140
Period size: 46 Copynumber: 4.4 Consensus size: 46
60120595 ATAACTCTAT
*
60120605 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
60120651 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * ** *
60120697 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCT-TGC
60120739 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
*
60120785 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
60120802 CGAAGCAGAT
Statistics
Matches: 107, Mismatches: 32, Indels: 24
0.66 0.20 0.15
Matches are distributed among these distances:
41 1 0.01
42 9 0.08
43 12 0.11
44 4 0.04
45 23 0.21
46 57 0.53
47 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
Found at i:60120844 original size:458 final size:458
Alignment explanation
Indices: 60119987--60121230 Score: 2312
Period size: 458 Copynumber: 2.7 Consensus size: 458
60119977 GCAGCGAAGC
60119987 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
60120052 CTCCCTGCATTTGACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTTCCTGACTAC
66 CTCCCTGCATTTGACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTAC
60120117 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
131 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
60120182 GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGA
196 GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGA
60120247 CCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAA
261 CCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAA
*
60120312 GATTGCAGATCTTGCCTTCCTGTATTTGGTAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCC
326 GATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCC
60120377 CTGACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGAT
391 CTGACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGAT
*
60120442 TGA
456 TAA
* *
60120445 AGATCAAAGATGGCATATTTTACCTCCCTGACTACAGTGGAGTACATTGAATCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60120510 CTCCCTGCATTTGACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTAC
66 CTCCCTGCATTTGACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTAC
*
60120575 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAAATT
131 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
60120640 GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGA
196 GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGA
60120705 CCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAA
261 CCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAA
60120770 GATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCC
326 GATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCC
*
60120835 CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGAT
391 CTGACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGAT
60120900 TAA
456 TAA
* *
60120903 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACA-TGGGAGTACATTAAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGT-GGAGTACATTGAAGCCGATAACTCTA
* * * *
60120967 TCTCTCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACTTCCCTGACTA
65 TCTCCCTGCATTTGACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTA
*
60121032 CA-TGGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
130 CAGT-GGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
60121096 TTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCT
194 TTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCT
* *
60121161 GACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTG
259 GACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTG
60121226 AAGAT
324 AAGAT
60121231 CAAAGATGGC
Statistics
Matches: 765, Mismatches: 19, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
457 2 0.00
458 763 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (458 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTAC
AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATT
GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGA
CCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAA
GATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCC
CTGACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGAT
TAA
Found at i:60121004 original size:324 final size:323
Alignment explanation
Indices: 60120674--60122297 Score: 1516
Period size: 324 Copynumber: 5.0 Consensus size: 323
60120664 GCAGCGAAGC
* *
60120674 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACA-GTGGAGTACATTGAAGCCGATAATTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATG-GGAGTACATTGAAGCCGATAACTCTA
*
60120738 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
60120803 GAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAAC
130 GAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAAC
*
60120868 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATCAAAGATGGCAGATTTTACTTCCCTG
195 TCTATCTCCCTGTATTTGGCAGTGGAATAGATT-AAGATCAAAGATGGCAGATTTTACCTCCCTG
* * *
60120933 ACTACA-TGGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTG
259 ACTACAGT-GGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTG
60120997 A
323 A
* *
60120998 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
*
60121063 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
60121128 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
60121193 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATT-AAGATCAAAGATGGCAGATTTTACCTCCCTGA
*
60121258 CTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTAA
260 CTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
60121322 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
* ** *
60121387 CTCTCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGAT-TTTACTTCCCTG-A-C
66 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT------T-GCAGATCTTGCCTT-CCTGTATT
* * * * ** ** ** * * * * * * *
60121449 T-ACATG-GGAGTACATTGAAGCCGATA-ATTCTATCTCCCTATATTTGGCAGTGGAATAGATTG
123 TGGCA-GCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCT-GA-CT-ACAGTGGAGTACATTG
** * * ** * * *
60121511 AAGATTGCAGATCT-TGCCTTCCTGTATTTGGCAG-CG-A-AG---CAGATCAAAGATGGCAGAT
184 AAG-CCG-ATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTAAGATCAAAGATGGCAGAT
60121569 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
247 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGT
60121634 GGAATAGATTGA
312 GGAATAGATTGA
60121646 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACA-GTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATG-GGAGTACATTGAAGCCGATAACTCTA
* * * * *
60121710 TCTCCCTGCATTTGACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTG-A-C
65 TCTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT------T-GCAGATCTTGCCTTCCTGTATT
* * * * * ** ** ** * * * * * * * *
60121773 T-ACAGTGGAGTACATTGAAGCCGATA-ACTCTATCTTCCTGTATTTGGCAGTGGAATAGATTGA
123 TGGCAGCGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATTG-
* ** * * *
60121836 AAATTGCAGAT--CT-TGCCTTCCTGTATTTGGCAG-CG-A-AG---CAGATCAAAGATGGCAGA
184 -AA--GCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTAAGATCAAAGATGGCAGA
* *
60121892 TTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAG
246 TTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAG
60121957 TGGAATAGATTGA
311 TGGAATAGATTGA
* * * * * * * * ** ** ** *
60121970 AGAT------T-GCAGATCTTGCCTTCCTGTATTTGGCA-GCGAAGCAGATCAAAGATGGCAGAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACATG-GGAGTACATTGAAGCCGATA-AC
* * * * * * ** * * ** *
60122027 TTTACCTCCCTG-A-CT-ACAGTGGAGTACATTGAAG-CCG-ATAACTCTATCTCCCTGTATTTG
61 TCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATTGCAGATCT-TGCCTTCCTGTATTTG
* * *
60122087 GCAGTGGAATAGATTGAAGATCAAAGATGGTAGATTTTACCTCCCTGACTACAGTGGAGTACATT
125 GCAG-CG---A-A--GCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATT
* * *
60122152 AAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGAT
183 GAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATT-AAGATCAAAGATGGCAGAT
* *
60122217 TTTACTTCCCTGACTACA-TGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAG
247 TTTACCTCCCTGACTACAGT-GGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAG
60122281 TGGAATAGATTGA
311 TGGAATAGATTGA
60122294 AGAT
1 AGAT
60122298 TGTAGATCTT
Statistics
Matches: 1132, Mismatches: 117, Indels: 102
0.84 0.09 0.08
Matches are distributed among these distances:
309 3 0.00
310 10 0.01
311 1 0.00
312 1 0.00
313 3 0.00
314 6 0.01
316 4 0.00
317 30 0.03
318 33 0.03
319 4 0.00
320 28 0.02
321 21 0.02
323 3 0.00
324 887 0.78
325 6 0.01
326 3 0.00
327 12 0.01
328 17 0.02
329 4 0.00
330 24 0.02
331 28 0.02
332 4 0.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (323 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTAAGATCAAAGATGGCAGATTTTACCTCCCTGAC
TACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:60121138 original size:229 final size:227
Alignment explanation
Indices: 60119944--60121325 Score: 1515
Period size: 229 Copynumber: 6.0 Consensus size: 227
60119934 GCAGAGCTGG
* *
60119944 TTGAAGATAT-CAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
*
60120008 ACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGACAGTGGA
65 ACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGA
60120073 ATAGATTGAAGATCGAAGATGGCAGATTTTACCTTCCTGACTACAGTGGAGTACATTGAAGCCGA
130 ATAGATTGAAGATC-AAGATGGCAGATTTTA-CTTCCTGACTACAGTGGAGTACATTGAAGCCGA
60120138 TAACTCTATCTCCCTGTATTTGGCAGTGGAATAGA
193 TAACTCTATCTCCCTGTATTTGGCAGTGGAATAGA
60120173 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* * *
60120238 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAA
** *** * * ** **
60120303 TAGATTGAAGAT-----T-GCAGATCTTGCCTTCCTGTA-TTTGGTAGCGAAGCAGATCAAAGAT
131 TAGATTGAAGATCAAGATGGCAGAT-TTTACTTCCTG-ACTACAGT-G-G-AGTACATTGAAGCC
** * * * * * * *
60120361 GGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACA
191 GATA-ACTCTATCTCCCTGTATTTGGCAGTGGAATAGA
* ** * * *
60120396 TT-AA-A--GCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATG
1 TTGAAGATTGCAGAT--CT-TGCCTTCCTGTATTTGGCAG-CG---A-A--GCAGATCAAAGATG
* *
60120457 GCATATTTTACCTCCCTGACTACAGTGGAGTACATTGAATCCGATAACTCTATCTCCCTGCATTT
56 GCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTT
* *
60120522 GACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACAT
121 GGCAGTGGAATAGATTGAAGATC-AAGATGGCAGATTTTA-CTTCCTGACTACAGTGGAGTACAT
60120587 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGA
184 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGA
*
60120631 TTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* * *
60120696 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAA
** * * * * * * ** **
60120761 TAGATTGAAGAT-----T-GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATG
131 TAGATTGAAGATCAAGATGGCAGAT-TTTACTTCCTG-A-CT-ACAGTGGAGTACATTGAAGCCG
** * * * * * * *
60120820 GCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACA
192 ATA-ACTCTATCTCCCTGTATTTGGCAGTGGAATAGA
** * * ** * * *
60120854 TTGAAG-CCG-ATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTAAAGATCAAAGATGGC
1 TTGAAGATTGCAGATCT-TGCCTTCCTGTATTTGGCAG-CG-A-AG----CAGATCAAAGATGGC
* * *
60120917 AGATTTTACTTCCCTGACTACA-TGGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTG
58 AGATTTTACCTCCCTGACTACAGT-GGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTG
60120981 GCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACTTCCCTGACTACA-TGGGAGTACAT
122 GCAGTGGAATAGATTGAAGATC-AAGATGGCAGATTTTACTT-CCTGACTACAGT-GGAGTACAT
*
60121045 TGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGA
184 TGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGA
60121089 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
*
60121154 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAA
*
60121219 TAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGAT
131 TAGATTGAAGATC-AAGATGGCAGATTTTA-CTTCCTGACTACAGTGGAGTACATTGAAGCCGAT
60121284 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGA
194 AACTCTATCTCCCTGTATTTGGCAGTGGAATAGA
*
60121318 TTAAAGAT
1 TTGAAGAT
60121326 CAAAGATGGC
Statistics
Matches: 944, Mismatches: 145, Indels: 128
0.78 0.12 0.11
Matches are distributed among these distances:
219 5 0.01
221 7 0.01
222 65 0.07
223 38 0.04
224 5 0.01
225 28 0.03
226 23 0.02
227 1 0.00
228 2 0.00
229 593 0.63
230 4 0.00
231 1 0.00
232 24 0.03
233 27 0.03
234 5 0.01
235 42 0.04
236 62 0.07
237 7 0.01
239 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (227 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
CCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAA
TAGATTGAAGATCAAGATGGCAGATTTTACTTCCTGACTACAGTGGAGTACATTGAAGCCGATAA
CTCTATCTCCCTGTATTTGGCAGTGGAATAGA
Found at i:60121217 original size:45 final size:45
Alignment explanation
Indices: 60121166--60121312 Score: 129
Period size: 45 Copynumber: 3.2 Consensus size: 45
60121156 TCCCTGACTA
60121166 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * * * *
60121211 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-A
1 CAGTGGAGTACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGTATTTGG
60121261 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
60121306 CAGTGGA
1 CAGTGGA
60121313 ATAGATTAAA
Statistics
Matches: 75, Mismatches: 16, Indels: 22
0.66 0.14 0.19
Matches are distributed among these distances:
42 11 0.15
43 2 0.03
44 1 0.01
45 23 0.31
46 3 0.04
47 1 0.01
48 1 0.01
49 3 0.04
50 16 0.21
51 1 0.01
52 2 0.03
53 11 0.15
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (45 bp):
CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
Found at i:60121581 original size:229 final size:229
Alignment explanation
Indices: 60121322--60122202 Score: 1101
Period size: 229 Copynumber: 3.8 Consensus size: 229
60121312 AATAGATTAA
*
60121322 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACA-TGGGAGTACATTAAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGT-GGAGTACATTAAAGCCGATAACTCTA
* * *
60121386 TCTCTCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACTTCCCTGACTA
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
* **
60121451 CA-TGGGAGTACATTGAAGCCGATAATTCTATCTCCCTATATTTGGCAGTGGAATAGATTGAAGA
130 CAGT-GGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGA
60121515 TTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
194 TTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
*
60121551 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
60121616 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
*
60121681 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGACAGTGGAATAGATTGAAGATC
131 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT-
* * * * * * * *
60121746 GAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGT
195 -----T-GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
* ** ** ** * * * * * * * * *
60121784 ACATTGAAGCCGATA-ACTCTATCTTCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGAT-
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT-ACAGTGGAGTACATT--AAA--GCCGATA
** * * *
60121847 -CT-TGCCTTCCTGTATTTGGCAG-CG---A-A--GCAGATCAAAGATGGCAGATTTTACCTCCC
59 ACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCC
* * *
60121903 TGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAATAGATT
124 TGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATT
60121968 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
189 GAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
*
60122009 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
*
60122074 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGTAGATTTTACCTCCCTGACTAC
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
* *
60122139 AGTGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTGAAGAT
131 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT
60122203 CAAAGATGGC
Statistics
Matches: 543, Mismatches: 79, Indels: 60
0.80 0.12 0.09
Matches are distributed among these distances:
219 5 0.01
221 4 0.01
222 32 0.06
223 15 0.03
224 2 0.00
225 15 0.03
226 11 0.02
227 1 0.00
229 371 0.68
230 2 0.00
231 1 0.00
232 11 0.02
233 15 0.03
234 2 0.00
235 15 0.03
236 32 0.06
237 4 0.01
239 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATT
GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
Found at i:60121586 original size:419 final size:419
Alignment explanation
Indices: 60120808--60121836 Score: 1954
Period size: 419 Copynumber: 2.5 Consensus size: 419
60120798 GCAGCGAAGC
60120808 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60120873 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATCAAAGATGGCAGATTTTACTTCCCTGACTAC
66 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATCAAAGATGGCAGATTTTACTTCCCTGACTAC
60120938 ATGGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTGAAGATC
131 ATGGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTGAAGATC
60121003 AAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAATTCTATCTCCC
196 AAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAATTCTATCTCCC
*
60121068 TGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
261 TATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
60121133 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
326 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
60121198 TCCCTGTATTTGGCAGTGGAATAGATTGA
391 TCCCTGTATTTGGCAGTGGAATAGATTGA
60121227 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60121292 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATCAAAGATGGCAGATTTTACTTCCCTGACTAC
66 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATCAAAGATGGCAGATTTTACTTCCCTGACTAC
60121357 ATGGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTGAAGATC
131 ATGGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTGAAGATC
60121422 AAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAATTCTATCTCCC
196 AAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAATTCTATCTCCC
60121487 TATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
261 TATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
60121552 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
326 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
60121617 TCCCTGTATTTGGCAGTGGAATAGATTGA
391 TCCCTGTATTTGGCAGTGGAATAGATTGA
60121646 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * * * *
60121711 CTCCCTGCATTTGACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTAC
66 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATCAAAGATGGCAGATTTTACTTCCCTGACTAC
* *
60121776 A-GTGGAGTACATTGAAGCCGATAACTCTATCT-TCCTGTATTTGGCAGTGGAATAGATTGAA
131 ATG-GGAGTACATTAAAGCCGATAACTCTATCTCT-CTGCATTTGGCAGTGGAATAGATTGAA
60121837 AATTGCAGAT
Statistics
Matches: 600, Mismatches: 8, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
418 2 0.00
419 598 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (419 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATCAAAGATGGCAGATTTTACTTCCCTGACTAC
ATGGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTGAAGATC
AAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAATTCTATCTCCC
TATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCA
GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
TCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:60121636 original size:45 final size:44
Alignment explanation
Indices: 60121584--60121836 Score: 136
Period size: 45 Copynumber: 5.4 Consensus size: 44
60121574 CTCCCTGACT
*
60121584 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTG
1 ACAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTG-ATTTG
* * * * * * *
60121629 GCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA-CT-
1 ACAGTGGAATACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGATTTG
*
60121679 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTG
1 ACAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTG-ATTTG
* * * * * *
60121724 ACAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGA-CT-
1 ACAGTGGAATACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGATTTG
* *
60121774 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTTCCTGTATTTG
1 ACAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTG-ATTTG
* *
60121819 GCAGTGGAATAGATTGAA
1 ACAGTGGAATACATTGAA
60121837 AATTGCAGAT
Statistics
Matches: 152, Mismatches: 34, Indels: 44
0.66 0.15 0.19
Matches are distributed among these distances:
42 21 0.14
43 4 0.03
44 2 0.01
45 48 0.32
46 6 0.04
47 2 0.01
48 2 0.01
49 6 0.04
50 33 0.22
51 2 0.01
52 4 0.03
53 22 0.14
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGATTTG
Found at i:60121695 original size:50 final size:49
Alignment explanation
Indices: 60121630--60121792 Score: 151
Period size: 50 Copynumber: 3.4 Consensus size: 49
60121620 CTGTATTTGG
*
60121630 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
1 CAGTGGAATACATTGAAGATC-AAGATGGCAGATTTTACCTCCCTGACTA
* * * * * *
60121680 CAGTGGAGTACATTGAAG--C-CGAT---A-ACTCTATCTCCCTGCATTTGA
1 CAGTGGAATACATTGAAGATCAAGATGGCAGATTTTACCTCCCTG-A-CT-A
*
60121725 CAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTA
1 CAGTGGAATACATTGAAGATC-AAGATGGCAGATTTTACCTCCCTGACTA
*
60121775 CAGTGGAGTACATTGAAG
1 CAGTGGAATACATTGAAG
60121793 CCGATAACTC
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
42 11 0.13
43 2 0.02
44 1 0.01
45 17 0.20
46 3 0.03
47 1 0.01
48 1 0.01
49 3 0.03
50 33 0.38
51 1 0.01
52 2 0.02
53 11 0.13
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (49 bp):
CAGTGGAATACATTGAAGATCAAGATGGCAGATTTTACCTCCCTGACTA
Found at i:60121981 original size:134 final size:134
Alignment explanation
Indices: 60121741--60122107 Score: 689
Period size: 134 Copynumber: 2.7 Consensus size: 134
60121731 AATAGATTGA
*
60121741 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
60121806 CTTCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
60121871 AAGC
131 AAGC
* *
60121875 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60121940 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
60122005 AAGC
131 AAGC
60122009 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
60122074 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
60122108 CAAAGATGGT
Statistics
Matches: 226, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
134 226 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:60122002 original size:46 final size:46
Alignment explanation
Indices: 60121806--60122002 Score: 140
Period size: 46 Copynumber: 4.4 Consensus size: 46
60121796 ATAACTCTAT
*
60121806 CTTCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGC
1 CTTCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * ** * * *
60121852 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTTCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
* *** * * ** *
60121898 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAATTCTAT--
1 CTTCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCT-TGC
*
60121940 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTTCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
60121986 CTTCCTGTATTTGGCAG
1 CTTCCTGTATTTGGCAG
60122003 CGAAGCAGAT
Statistics
Matches: 108, Mismatches: 31, Indels: 24
0.66 0.19 0.15
Matches are distributed among these distances:
41 1 0.01
42 9 0.08
43 12 0.11
44 4 0.04
45 23 0.21
46 58 0.54
47 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (46 bp):
CTTCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
Found at i:60122281 original size:458 final size:458
Alignment explanation
Indices: 60121417--60122403 Score: 1771
Period size: 458 Copynumber: 2.2 Consensus size: 458
60121407 AATAGATTGA
*
60121417 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACA-TGGGAGTACATTGAAGCCGATAATTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGT-GGAGTACATTGAAGCCGATAATTCTA
60121481 TCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
60121546 GAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAAC
130 GAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAAC
60121611 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG
195 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTG
*
60121676 ACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGACAGTGGAATAGATTGA
260 ACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGCATTTGACAGTGGAATAGATTGA
*
60121741 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
325 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * *
60121806 CTTCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
390 CTCCCTGTATCTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
60121871 AAGC
455 AAGC
*
60121875 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
*
60121940 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
60122005 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
*
60122070 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGTAGATTTTACCTCCCTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA
* *
60122135 CTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAATAGATTGAA
261 CTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGCATTTGACAGTGGAATAGATTGAA
*
60122200 GATCAAAGATGGCAGATTTTACTTCCCTGACTACA-TGGGAGTACATTGAAGCCGATAACTCTAT
326 GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGT-GGAGTACATTGAAGCCGATAACTCTAT
* *
60122264 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGCA
390 CTCCCTGTATCTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
60122329 AAGC
455 AAGC
* * * *
60122333 AGATCGAAGATGGCAGATTTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTA
1 AGATCAAAGATGGCAGA-TTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTA
60122398 TCTCCC
65 TCTCCC
60122404 GGGGCAAGAA
Statistics
Matches: 507, Mismatches: 19, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
457 1 0.00
458 456 0.90
459 50 0.10
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (458 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
CTCCCTATATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA
CTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCCCTGCATTTGACAGTGGAATAGATTGAA
GATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATC
TCCCTGTATCTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAA
AGC
Found at i:60122465 original size:44 final size:45
Alignment explanation
Indices: 60122411--60122920 Score: 488
Period size: 44 Copynumber: 11.6 Consensus size: 45
60122401 CCCGGGGCAA
* *
60122411 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
* * * *
60122455 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
* * * * * *
60122499 GAAGTAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
* *
60122543 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
* * * *
60122587 GAAGTGGATCGAAGATA-CAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
* * * * * * *
60122631 GAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGG-CGT
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
* *
60122675 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
* * * *
60122719 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGC
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
* * * * * *
60122763 GAAGTAGATC-ACAGAAAGCAGATCTTGTCTTCATGTATTGG-CGT
1 GAAGTAGATCGA-AGATAGCAGATCTTATCTTCCTATATTGGTAGC
* * *
60122807 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
* * * * * *
60122851 GAAGTGGATCCAAGATA-CAGATCTTGTCTT-CTCATACTGGTGGT
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCT-ATATTGGTAGC
*
60122895 GAAGTAGATCGAAGAAAGCAGATCTT
1 GAAGTAGATCGAAGATAGCAGATCTT
60122921 GTCCCTGTAT
Statistics
Matches: 375, Mismatches: 77, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
42 2 0.01
43 85 0.23
44 216 0.58
45 72 0.19
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (45 bp):
GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAGC
Found at i:60122570 original size:132 final size:132
Alignment explanation
Indices: 60122411--60122920 Score: 885
Period size: 132 Copynumber: 3.9 Consensus size: 132
60122401 CCCGGGGCAA
* *
60122411 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
60122476 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGGC
60122541 GT
131 GT
*
60122543 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
*
60122608 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGGC
60122673 GT
131 GT
* *
60122675 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
* *
60122740 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCACAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGGC
60122805 GT
131 GT
* * *
60122807 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
* * * *
60122872 TCTTGTCTTCTCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTT
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTT
60122921 GTCCCTGTAT
Statistics
Matches: 360, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 360 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATACAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTATCTTCATGTATTGGC
GT
Found at i:60124517 original size:23 final size:23
Alignment explanation
Indices: 60124473--60124518 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
60124463 TATATACCAT
*
60124473 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
60124496 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
60124519 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:60124785 original size:19 final size:19
Alignment explanation
Indices: 60124750--60124786 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
60124740 ATATATTACC
**
60124750 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
60124769 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
60124787 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:60126375 original size:20 final size:21
Alignment explanation
Indices: 60126347--60126401 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
60126337 ACAAAGATAG
60126347 GTATCGATACTTTTGTGAA-A
1 GTATCGATACTTTTGTGAATA
* *
60126367 GTATTGATAC-TTTGTTAATA
1 GTATCGATACTTTTGTGAATA
*
60126387 GTATCAATACTTTTG
1 GTATCGATACTTTTG
60126402 ATTTTTACTC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 7 0.24
20 18 0.62
21 4 0.14
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.45
Consensus pattern (21 bp):
GTATCGATACTTTTGTGAATA
Found at i:60151035 original size:24 final size:24
Alignment explanation
Indices: 60151006--60151052 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
60150996 ATGTTTTAAC
60151006 TTTTTTATTTACCAAAATATATAT
1 TTTTTTATTTACCAAAATATATAT
60151030 TTTTTTATTTACCAAAATATATA
1 TTTTTTATTTACCAAAATATATA
60151053 AAAAAACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (24 bp):
TTTTTTATTTACCAAAATATATAT
Found at i:60151152 original size:27 final size:29
Alignment explanation
Indices: 60151119--60151186 Score: 108
Period size: 27 Copynumber: 2.5 Consensus size: 29
60151109 TCACGCTAAA
60151119 GCCATTGGCGGCACCAATGGTGCCA-A-T
1 GCCATTGGCGGCACCAATGGTGCCATACT
60151146 GCCATTGGCGGCACCAATGGTGCCATACT
1 GCCATTGGCGGCACCAATGGTGCCATACT
60151175 G--ATTGGCGGCAC
1 GCCATTGGCGGCAC
60151187 TACTTGTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
27 36 0.92
28 1 0.03
29 2 0.05
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (29 bp):
GCCATTGGCGGCACCAATGGTGCCATACT
Found at i:60151350 original size:19 final size:21
Alignment explanation
Indices: 60151312--60151350 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
60151302 AATAATTGAT
*
60151312 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
60151333 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
60151351 TTTGTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:60156065 original size:5 final size:5
Alignment explanation
Indices: 60156055--60156125 Score: 62
Period size: 5 Copynumber: 14.6 Consensus size: 5
60156045 AAAAAAATAT
* *
60156055 TATTA TATTA TAGTAA TGATTA TGTT- T-TTA TATTA TATTA TCATTA
1 TATTA TATTA TA-TTA T-ATTA TATTA TATTA TATTA TATTA T-ATTA
60156101 -A-TA TATTA TATTA TATTA TA-TA TAT
1 TATTA TATTA TATTA TATTA TATTA TAT
60156126 ACATAAAACA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
3 4 0.07
4 8 0.15
5 32 0.58
6 10 0.18
7 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
TATTA
Found at i:60156107 original size:19 final size:19
Alignment explanation
Indices: 60156083--60156125 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
60156073 ATTATGTTTT
60156083 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
60156102 TATATTATATTATATTATA
1 TATATTATATTATATTATA
60156121 TATAT
1 TATAT
60156126 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:60156158 original size:18 final size:19
Alignment explanation
Indices: 60156130--60156169 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
60156120 ATATATACAT
*
60156130 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
60156149 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
60156167 AAA
1 AAA
60156170 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:60157158 original size:46 final size:44
Alignment explanation
Indices: 60157099--60157213 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
60157089 ACAGGACAGA
* *
60157099 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
60157145 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
60157189 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
60157214 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:60157194 original size:44 final size:45
Alignment explanation
Indices: 60157099--60157232 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
60157089 ACAGGACAGA
* *
60157099 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
60157145 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
60157189 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
60157233 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:60159904 original size:46 final size:44
Alignment explanation
Indices: 60159800--60159907 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
60159790 TGTCTTTGAC
** * * *
60159800 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
60159844 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
60159890 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
60159908 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:60160855 original size:9 final size:9
Alignment explanation
Indices: 60160841--60160875 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
60160831 TTCTATTCTG
60160841 TTTCTTTTC
1 TTTCTTTTC
*
60160850 TTTCTTTTT
1 TTTCTTTTC
*
60160859 TTTCTATTC
1 TTTCTTTTC
60160868 TTTCTTTT
1 TTTCTTTT
60160876 GTTTTATGTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:60160868 original size:18 final size:19
Alignment explanation
Indices: 60160841--60160880 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
60160831 TTCTATTCTG
*
60160841 TTTCTTTTCTTTCTTTT-T
1 TTTCTATTCTTTCTTTTGT
60160859 TTTCTATTCTTTCTTTTGT
1 TTTCTATTCTTTCTTTTGT
60160878 TTT
1 TTT
60160881 ATGTATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.80
Consensus pattern (19 bp):
TTTCTATTCTTTCTTTTGT
Found at i:60160897 original size:5 final size:5
Alignment explanation
Indices: 60160884--60160955 Score: 62
Period size: 5 Copynumber: 14.4 Consensus size: 5
60160874 TTGTTTTATG
60160884 TATATA TATAA TATAA TATAA TAT-A T-TAA TGATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
60160932 CATAA TCATTAC TATAA TATAA TA
1 TATAA T-A-TAA TATAA TATAA TA
60160956 ATATTTTTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 34 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (5 bp):
TATAA
Found at i:60160909 original size:19 final size:19
Alignment explanation
Indices: 60160885--60160927 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
60160875 TGTTTTATGT
60160885 ATATATATAAT-ATAATATA
1 ATATAT-TAATGATAATATA
60160904 ATATATTAATGATAATATA
1 ATATATTAATGATAATATA
60160923 ATATA
1 ATATA
60160928 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATATATTAATGATAATATA
Found at i:60160937 original size:24 final size:24
Alignment explanation
Indices: 60160891--60160956 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
60160881 ATGTATATAT
* * *
60160891 ATAATATAATATAATATATTAATG
1 ATAATATAATATAATAAAATAATC
60160915 ATAATATAATATAA-AAACATAATC
1 ATAATATAATATAATAAA-ATAATC
*
60160939 ATTACTATAATATAATAA
1 A-TAATATAATATAATAA
60160957 TATTTTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
23 2 0.06
24 19 0.54
25 12 0.34
26 2 0.06
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAATATAATATAATAAAATAATC
Found at i:60161773 original size:21 final size:21
Alignment explanation
Indices: 60161749--60161865 Score: 84
Period size: 22 Copynumber: 5.7 Consensus size: 21
60161739 CCTTCCTTCC
60161749 CTCTTCTTCTTCTTTTTTTTT
1 CTCTTCTTCTTCTTTTTTTTT
* * *
60161770 CTCTTCTCCTTTCCTTTTCTTT
1 CTCTTCTTC-TTCTTTTTTTTT
*
60161792 C-CTTCTTTCTTTCTTTTTTCTT
1 CTCTTC-TTC-TTCTTTTTTTTT
* *
60161814 CTCCT-TTCTT-TCTTTTTTT
1 CTCTTCTTCTTCTTTTTTTTT
* *
60161833 CTCTTC-T-TTCCTTTTCTTT
1 CTCTTCTTCTTCTTTTTTTTT
*
60161852 C-CTTCTTTTTCTTT
1 CTCTTCTTCTTCTTT
60161866 CTTTCCTCTC
Statistics
Matches: 74, Mismatches: 15, Indels: 15
0.71 0.14 0.14
Matches are distributed among these distances:
18 6 0.08
19 20 0.27
20 7 0.09
21 15 0.20
22 24 0.32
23 2 0.03
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (21 bp):
CTCTTCTTCTTCTTTTTTTTT
Found at i:60161776 original size:18 final size:19
Alignment explanation
Indices: 60161753--60161898 Score: 90
Period size: 21 Copynumber: 7.4 Consensus size: 19
60161743 CCTTCCCTCT
60161753 TCTTCTTCTTT-TTTTTTC
1 TCTTCTTCTTTCTTTTTTC
*
60161771 TCTTCTCCTTTCCTTTTCTT-
1 TCTTCTTCTTT-CTTTT-TTC
60161791 TCCTTCTTTCTTTCTTTTTTC
1 T-CTTC-TTCTTTCTTTTTTC
*
60161812 TTCTCCTTTCTTTCTTTTTT-
1 -TCTTC-TTCTTTCTTTTTTC
60161832 TC-TCTTCTTTCCTTTTCTT-
1 TCTTCTTCTTT-CTTTT-TTC
60161851 TCCTTCTT-TTTCTTTCTTTCC
1 T-CTTCTTCTTTCTTT-TTT-C
* *
60161872 TCTCCTTCCTTCCTTTCTTTC
1 TCTTCTT-CTTTCTTT-TTTC
60161893 T-TTCTT
1 TCTTCTT
60161899 TCCCTCTCCT
Statistics
Matches: 105, Mismatches: 7, Indels: 30
0.74 0.05 0.21
Matches are distributed among these distances:
17 6 0.06
18 16 0.15
19 11 0.10
20 21 0.20
21 35 0.33
22 16 0.15
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (19 bp):
TCTTCTTCTTTCTTTTTTC
Found at i:60161780 original size:34 final size:34
Alignment explanation
Indices: 60161720--60161819 Score: 94
Period size: 34 Copynumber: 2.8 Consensus size: 34
60161710 AAAAAATTAC
* *
60161720 CTTCTTTTTTCTTTTTTTTCCT-TCCTTCCCTCTT
1 CTTCTTCTTT-TTTTTTTTCTTCTCCTTCCCTCTT
* * *
60161754 CTTCTTCTTTTTTTTTCTCTTCTCCTTTCCTTTT
1 CTTCTTCTTTTTTTTTTTCTTCTCCTTCCCTCTT
60161788 CTTTCCTTCTTTCTTTCTTTTTTCTTCTCCTT
1 C-TT-CTTC-TT-TTT-TTTTTTCTTCTCCTT
60161820 TCTTTCTTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
33 9 0.17
34 20 0.37
35 2 0.04
36 4 0.07
37 2 0.04
38 3 0.06
39 14 0.26
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (34 bp):
CTTCTTCTTTTTTTTTTTCTTCTCCTTCCCTCTT
Found at i:60161784 original size:39 final size:38
Alignment explanation
Indices: 60161720--60161821 Score: 111
Period size: 39 Copynumber: 2.7 Consensus size: 38
60161710 AAAAAATTAC
*
60161720 CTTCTTTTTTCTTTT-TTTTCC-TTCCTTCCCTCTT-CTT
1 CTTCTTTTTT-TTTTCTTCTCCTTTCCTTCCCT-TTCCTT
**
60161757 CTTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTT
1 CTTCTTTTTTTTT-TCTTCTCCTTTCCTTCCCTTTCCTT
*
60161796 CTTTCTTTCTTTTTTCTTCTCCTTTC
1 C-TTCTTTTTTTTTTCTTCTCCTTTC
60161822 TTTCTTTTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
36 3 0.05
37 11 0.20
38 7 0.12
39 24 0.43
40 11 0.20
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (38 bp):
CTTCTTTTTTTTTTCTTCTCCTTTCCTTCCCTTTCCTT
Found at i:60161801 original size:4 final size:4
Alignment explanation
Indices: 60161785--60161900 Score: 94
Period size: 4 Copynumber: 28.0 Consensus size: 4
60161775 CTCCTTTCCT
* *
60161785 TTTC TTTC CTTC TTTC TTTC TTT- TTTC TTCTCC TTTC TTTC TTTT TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTTC TTTC TTTC TTTC
* * *
60161834 TCTTC TTTCC TTTTC TTTC CTTC -TT- TTTC TTTC TTTCC TCTCC TTCC
1 T-TTC TTT-C -TTTC TTTC TTTC TTTC TTTC TTTC TTT-C T-TTC TTTC
*
60161881 TTCC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC
60161901 CCTCTCCTTT
Statistics
Matches: 95, Mismatches: 7, Indels: 20
0.78 0.06 0.16
Matches are distributed among these distances:
3 7 0.07
4 69 0.73
5 12 0.13
6 7 0.07
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTC
Found at i:60161885 original size:31 final size:30
Alignment explanation
Indices: 60161790--60161909 Score: 124
Period size: 31 Copynumber: 4.1 Consensus size: 30
60161780 TTCCTTTTCT
* *
60161790 TTCCTT-CTTTCTTTCTTT-TTTCTTCTCC
1 TTCCTTCCTTTTTTTCTTTCTTTCCTCTCC
* *
60161818 TTTCTTTCTTTTTTTCTCTTCTTTCCT-T--
1 TTCCTTCCTTTTTTTCT-TTCTTTCCTCTCC
*
60161846 TTCTTTCCTTCTTTTTCTTTCTTTCCTCTCC
1 TTCCTTCCTT-TTTTTCTTTCTTTCCTCTCC
*
60161877 TTCCTTCCTTTCTTTCTTTCTTTCCCTCTCC
1 TTCCTTCCTTTTTTTCTTTCTTT-CCTCTCC
60161908 TT
1 TT
60161910 TTGCCCCCCC
Statistics
Matches: 76, Mismatches: 8, Indels: 13
0.78 0.08 0.13
Matches are distributed among these distances:
28 21 0.28
29 17 0.22
30 15 0.20
31 23 0.30
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (30 bp):
TTCCTTCCTTTTTTTCTTTCTTTCCTCTCC
Found at i:60162020 original size:27 final size:27
Alignment explanation
Indices: 60161943--60162021 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
60161933 CCCTATTATA
*
60161943 CATTGGTGCCGCCAATGGTATTGGCAC
1 CATTGGTGCCGCCAATGGCATTGGCAC
*
60161970 CATTGGTGCCGCCAATGGCTTTGGCAC
1 CATTGGTGCCGCCAATGGCATTGGCAC
* * *
60161997 CTTTGGTGCCACCAATGCCATTGGC
1 CATTGGTGCCGCCAATGGCATTGGC
60162022 GTGACCAGTG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.16, C:0.29, G:0.28, T:0.27
Consensus pattern (27 bp):
CATTGGTGCCGCCAATGGCATTGGCAC
Found at i:60165936 original size:53 final size:52
Alignment explanation
Indices: 60165865--60166032 Score: 124
Period size: 53 Copynumber: 3.4 Consensus size: 52
60165855 AACCCTAAAT
60165865 ACTAAA-CCTCAATCTATTTTTTTTTAAATTTATAATTAAGTTACTCAAGTAAC
1 ACTAAACCCT-AATCTATTTTTTTTTAAATTTATAATTAA-TTACTCAAGTAAC
* * * ** * *
60165918 TCTAAACCCTAATTTATTTGATTTTT---CCT-TAA--AA--ACCCTA--AAC
1 ACTAAACCCTAATCTATTT-TTTTTTAAATTTATAATTAATTACTCAAGTAAC
**
60165961 ACTAAACCCTAATCTATTTTTTTAAAAATTTATAATTAATTTACTCAAGTAAC
1 ACTAAACCCTAATCTATTTTTTTTTAAATTTATAATTAA-TTACTCAAGTAAC
* *
60166014 CCTAAACCCTAATTTATTT
1 ACTAAACCCTAATCTATTT
60166033 AATTTTTTTC
Statistics
Matches: 84, Mismatches: 18, Indels: 26
0.66 0.14 0.20
Matches are distributed among these distances:
42 3 0.04
43 20 0.24
45 5 0.06
46 3 0.04
48 4 0.05
50 3 0.04
51 5 0.06
53 33 0.39
54 8 0.10
ACGTcount: A:0.38, C:0.18, G:0.02, T:0.42
Consensus pattern (52 bp):
ACTAAACCCTAATCTATTTTTTTTTAAATTTATAATTAATTACTCAAGTAAC
Found at i:60166068 original size:97 final size:96
Alignment explanation
Indices: 60165834--60166073 Score: 383
Period size: 96 Copynumber: 2.5 Consensus size: 96
60165824 AACAACTAGT
* **
60165834 TTTATTTGATTTTTCCTTAAAAACCCTAAATACTAAA-CCTCAATCTATTTTTTTTTAAATTTAT
1 TTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCT-AATCTATTTTTTTAAAAATTTAT
*
60165898 AATTAAGTTACTCAAGTAACTCTAAACCCTAA
65 AATTAAGTTACTCAAGTAACCCTAAACCCTAA
60165930 TTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTATTTTTTTAAAAATTTATA
1 TTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTATTTTTTTAAAAATTTATA
*
60165995 ATTAATTTACTCAAGTAACCCTAAACCCTAA
66 ATTAAGTTACTCAAGTAACCCTAAACCCTAA
* * *
60166026 TTTATTTAATTTTTTTCTTAAAAACCATAAACACTAAACCCTAATCTA
1 TTTATTTGA-TTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTA
60166074 AAAGTTATAA
Statistics
Matches: 134, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
96 95 0.71
97 39 0.29
ACGTcount: A:0.38, C:0.19, G:0.02, T:0.41
Consensus pattern (96 bp):
TTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTATTTTTTTAAAAATTTATA
ATTAAGTTACTCAAGTAACCCTAAACCCTAA
Found at i:60166294 original size:40 final size:41
Alignment explanation
Indices: 60166241--60166321 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 41
60166231 GTACTTTGTC
*
60166241 CACGTGGACACAAAACGCTCCCTCAAGGAAGCGTTTTCTGTT
1 CACGTGGA-ACAAAACGCTCCATCAAGGAAGCGTTTTCTGTT
* * **
60166283 CACGTGG-ACAAAGCGCTTCATTGAGGAAGCGTTTTCTGT
1 CACGTGGAACAAAACGCTCCATCAAGGAAGCGTTTTCTGT
60166322 CCAGCGCTTC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
40 27 0.79
42 7 0.21
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (41 bp):
CACGTGGAACAAAACGCTCCATCAAGGAAGCGTTTTCTGTT
Found at i:60166568 original size:19 final size:18
Alignment explanation
Indices: 60166539--60166597 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
60166529 TCAACAAAAA
60166539 TTATAAAAAATTATAAATTT
1 TTAT-AAAAATT-TAAATTT
* *
60166559 TTTTAAAAATTTCAAATAT
1 TTATAAAAATTT-AAATTT
60166578 TTATAAAAATTCTAAATTT
1 TTATAAAAATT-TAAATTT
60166597 T
1 T
60166598 ATATTTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
18 1 0.03
19 28 0.85
20 4 0.12
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TTATAAAAATTTAAATTT
Found at i:60166657 original size:27 final size:27
Alignment explanation
Indices: 60166619--60166671 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
60166609 ATAAATATTG
**
60166619 AAAATATTAAAATTTCTAAAAAAATAA
1 AAAATATTAAAAACTCTAAAAAAATAA
*
60166646 AAAAT-TTAAAAAACTCTAAAATAATA
1 AAAATATT-AAAAACTCTAAAAAAATA
60166672 TTTTTTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 2 0.09
27 20 0.91
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (27 bp):
AAAATATTAAAAACTCTAAAAAAATAA
Found at i:60168772 original size:26 final size:25
Alignment explanation
Indices: 60168736--60168787 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
60168726 ATAAAAAATA
*
60168736 ACCAAAATATTATAACTTTTTTATTT
1 ACCAAAATATTATAAATTTTTT-TTT
*
60168762 ACCAAAATATTGTAAATTTTTTTTT
1 ACCAAAATATTATAAATTTTTTTTT
60168787 A
1 A
60168788 TTTATCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (25 bp):
ACCAAAATATTATAAATTTTTTTTT
Found at i:60169497 original size:18 final size:19
Alignment explanation
Indices: 60169468--60169560 Score: 100
Period size: 18 Copynumber: 5.0 Consensus size: 19
60169458 TCTAATTAAG
*
60169468 TAATAACTCTATTTTAATT
1 TAATAACACTATTTTAATT
* *
60169487 TAATAA-ACTATTATCATT
1 TAATAACACTATTTTAATT
* *
60169505 TAATAACTCTATTTTAATG
1 TAATAACACTATTTTAATT
* *
60169524 TAATAA-ACTATTCTCATT
1 TAATAACACTATTTTAATT
*
60169542 TAATAACTCTATTTTAATT
1 TAATAACACTATTTTAATT
60169561 AAAAAATTAT
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
18 29 0.50
19 29 0.50
ACGTcount: A:0.39, C:0.12, G:0.01, T:0.48
Consensus pattern (19 bp):
TAATAACACTATTTTAATT
Found at i:60169518 original size:37 final size:37
Alignment explanation
Indices: 60169468--60169560 Score: 168
Period size: 37 Copynumber: 2.5 Consensus size: 37
60169458 TCTAATTAAG
60169468 TAATAACTCTATTTTAATTTAATAAACTATTATCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTATCATT
* *
60169505 TAATAACTCTATTTTAATGTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTATCATT
60169542 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
60169561 AAAAAATTAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.39, C:0.12, G:0.01, T:0.48
Consensus pattern (37 bp):
TAATAACTCTATTTTAATTTAATAAACTATTATCATT
Found at i:60169628 original size:5 final size:5
Alignment explanation
Indices: 60169577--60169608 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
60169567 TTATTACTTT
60169577 ATTTA ATTTA ATTTTA ATTTA ATTTA ATTTA A
1 ATTTA ATTTA A-TTTA ATTTA ATTTA ATTTA A
60169609 AAAAATAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTTA
Found at i:60169677 original size:20 final size:20
Alignment explanation
Indices: 60169640--60169678 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
60169630 TTTTAAAAAT
*
60169640 TAAAATAGAGTTATTTTAGG
1 TAAAATAGAGTTACTTTAGG
* *
60169660 TAAAATATATTTACTTTAG
1 TAAAATAGAGTTACTTTAG
60169679 AATGAAGAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.44
Consensus pattern (20 bp):
TAAAATAGAGTTACTTTAGG
Found at i:60170524 original size:27 final size:27
Alignment explanation
Indices: 60170480--60170531 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
60170470 CCTTTTAGTC
*
60170480 CTTTGGCACCATTGGTGCCGCCAATCT
1 CTTTGGCACCATTAGTGCCGCCAATCT
*
60170507 CTTTGGCACCTTTAGTGCCGCCAAT
1 CTTTGGCACCATTAGTGCCGCCAAT
60170532 GAGATTGGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.15, C:0.33, G:0.21, T:0.31
Consensus pattern (27 bp):
CTTTGGCACCATTAGTGCCGCCAATCT
Done.