Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 206 of 214
Found at i:60460750 original size:22 final size:22
Alignment explanation
Indices: 60460725--60460767 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
60460715 GCTCTCCATT
60460725 TAGCACATCT-GTGCTCTCTGTA
1 TAGCAC-TCTAGTGCTCTCTGTA
*
60460747 TAGCACTTTAGTGCTCTCTGT
1 TAGCACTCTAGTGCTCTCTGT
60460768 TCATTAGTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.16, C:0.26, G:0.19, T:0.40
Consensus pattern (22 bp):
TAGCACTCTAGTGCTCTCTGTA
Found at i:60463752 original size:21 final size:21
Alignment explanation
Indices: 60463728--60463799 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
60463718 CCGTAAGGGT
60463728 TGAACGGAAGCTCATAAGAGC
1 TGAACGGAAGCTCATAAGAGC
** * *
60463749 TGAAC-GAAAATCGATAAGGGT
1 TGAACGGAAGCTC-ATAAGAGC
* * *
60463770 TAAACAGAAGCTCAAAAGAGC
1 TGAACGGAAGCTCATAAGAGC
60463791 TGAACGGAA
1 TGAACGGAA
60463800 ACCCATTAGG
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
20 5 0.14
21 27 0.73
22 5 0.14
ACGTcount: A:0.44, C:0.15, G:0.26, T:0.14
Consensus pattern (21 bp):
TGAACGGAAGCTCATAAGAGC
Found at i:60463767 original size:42 final size:42
Alignment explanation
Indices: 60463714--60463815 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
60463704 TGCTAAGTAG
* * *
60463714 AAACCCGTAAGGGTTGAACGGAAGCTCATAAGAGCTGAACGA
1 AAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCTGAACGA
* * * *
60463756 AAATCGATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACGG
1 AAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCTGAACGA
*
60463798 AAACCCATTAGGGTTGAA
1 AAACCCATAAGGGTTGAA
60463816 TTGAAACTCA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.41, C:0.17, G:0.26, T:0.16
Consensus pattern (42 bp):
AAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCTGAACGA
Found at i:60472793 original size:18 final size:19
Alignment explanation
Indices: 60472750--60472799 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
60472740 AATCAATAAA
60472750 ATTTTAATTTTATTTAATT
1 ATTTTAATTTTATTTAATT
** *
60472769 -TGATAATTTT-TTTACTT
1 ATTTTAATTTTATTTAATT
60472786 ATTTTAATTTTATT
1 ATTTTAATTTTATT
60472800 ATGTAAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
17 6 0.25
18 16 0.67
19 2 0.08
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (19 bp):
ATTTTAATTTTATTTAATT
Found at i:60473705 original size:22 final size:21
Alignment explanation
Indices: 60473657--60473706 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
60473647 ATCCTTATTC
60473657 TTTTTA-TTTTCTTTAAACAT
1 TTTTTATTTTTCTTTAAACAT
60473677 TTTTTATTTTTCATTTAAA-AT
1 TTTTTATTTTTC-TTTAAACAT
60473698 TTTCTTATT
1 TTT-TTATT
60473707 CTCATTCTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.22
21 10 0.37
22 11 0.41
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTTATTTTTCTTTAAACAT
Found at i:60473711 original size:21 final size:20
Alignment explanation
Indices: 60473657--60473712 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 20
60473647 ATCCTTATTC
60473657 TTTTTATTTTC-TTTAAACAT
1 TTTTTATTTTCATTTAAA-AT
60473677 TTTTTATTTTTCATTTAAAAT
1 TTTTTA-TTTTCATTTAAAAT
*
60473698 TTTCTTATTCTCATT
1 TTT-TTATTTTCATT
60473713 CTAGAATTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 6 0.19
21 17 0.53
22 9 0.28
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTTATTTTCATTTAAAAT
Found at i:60483567 original size:33 final size:33
Alignment explanation
Indices: 60483530--60483614 Score: 138
Period size: 33 Copynumber: 2.6 Consensus size: 33
60483520 GTATTAAAAG
60483530 AAAGAATAAAGAAAAAGAAATAGAAAGACATGC
1 AAAGAATAAAGAAAAAGAAATAGAAAGACATGC
60483563 AAAGAATAAAGAAAAAGAAATAGAAAGACATGC
1 AAAGAATAAAGAAAAAGAAATAGAAAGACATGC
*
60483596 -AA-AATTAAGAAAGAAGAAA
1 AAAGAATAAAGAAA-AAGAAA
60483615 GACTCACGGC
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
31 9 0.18
32 8 0.16
33 33 0.66
ACGTcount: A:0.68, C:0.05, G:0.18, T:0.09
Consensus pattern (33 bp):
AAAGAATAAAGAAAAAGAAATAGAAAGACATGC
Found at i:60484287 original size:257 final size:257
Alignment explanation
Indices: 60483831--60484351 Score: 1033
Period size: 257 Copynumber: 2.0 Consensus size: 257
60483821 AAATGAAAAA
60483831 GGATTAAATTGTAGAATAAATTGTAAATTTTGAGTAATAGGGATTAAATTGTGAAAAAATCAAAA
1 GGATTAAATTGTAGAATAAATTGTAAATTTTGAGTAATAGGGATTAAATTGTGAAAAAATCAAAA
60483896 TTTAGGGGTTTAAGTGAAAATAGGGAGTTAAATTTATTTTAAAGTGAATTTTGTATGAAAATATA
66 TTTAGGGGTTTAAGTGAAAATAGGGAGTTAAATTTATTTTAAAGTGAATTTTGTATGAAAATATA
60483961 TGTATTGACCCAAAATTCACAAGCATCGGAAAAGTACATTATCGGGCCTCCGTCTTAGTAAACTG
131 TGTATTGACCCAAAATTCACAAGCATCGGAAAAGTACATTATCGGGCCTCCGTCTTAGTAAACTG
60484026 AGTCAAAAAAATATAATAATAATATTTGAAGCCATTATGAGTTTAGTTGAGTGCTTAATTAG
196 AGTCAAAAAAATATAATAATAATATTTGAAGCCATTATGAGTTTAGTTGAGTGCTTAATTAG
60484088 GGATTAAATTGTAGAATAAATTGTAAATTTTGAGTAATAGGGATTAAATTGTGAAAAAATCAAAA
1 GGATTAAATTGTAGAATAAATTGTAAATTTTGAGTAATAGGGATTAAATTGTGAAAAAATCAAAA
60484153 TTTAGGGGTTTAAGTGAAAATAGGGAGTTAAATTTATTTTAAAGTGAATTTTGTATGAAAATATA
66 TTTAGGGGTTTAAGTGAAAATAGGGAGTTAAATTTATTTTAAAGTGAATTTTGTATGAAAATATA
60484218 TGTATTGACCCAAAATTCACAAGCATCGGAAAAGTACATTATCGGGCCTCCGTCTTAGTAAACTG
131 TGTATTGACCCAAAATTCACAAGCATCGGAAAAGTACATTATCGGGCCTCCGTCTTAGTAAACTG
60484283 AGTCAAAAAAATATAATAATAATATTTGAAGCCATTATGAGTTTAGTTGAGTGCTTAATTAG
196 AGTCAAAAAAATATAATAATAATATTTGAAGCCATTATGAGTTTAGTTGAGTGCTTAATTAG
*
60484345 GTATTAA
1 GGATTAA
60484352 TTGGGTGAAT
Statistics
Matches: 263, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
257 263 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.34
Consensus pattern (257 bp):
GGATTAAATTGTAGAATAAATTGTAAATTTTGAGTAATAGGGATTAAATTGTGAAAAAATCAAAA
TTTAGGGGTTTAAGTGAAAATAGGGAGTTAAATTTATTTTAAAGTGAATTTTGTATGAAAATATA
TGTATTGACCCAAAATTCACAAGCATCGGAAAAGTACATTATCGGGCCTCCGTCTTAGTAAACTG
AGTCAAAAAAATATAATAATAATATTTGAAGCCATTATGAGTTTAGTTGAGTGCTTAATTAG
Found at i:60484528 original size:5 final size:5
Alignment explanation
Indices: 60484518--60484563 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
60484508 GATTTTTATG
60484518 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA T
60484564 CTAAATTAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:60509219 original size:5 final size:5
Alignment explanation
Indices: 60509209--60509264 Score: 76
Period size: 5 Copynumber: 10.8 Consensus size: 5
60509199 AAGTGAGTTG
* *
60509209 TTATA TTATA TTATTA TAATA TTATA TTATA TTATTA TAATA TTATA TTATA
1 TTATA TTATA TTA-TA TTATA TTATA TTATA TTA-TA TTATA TTATA TTATA
60509261 TTAT
1 TTAT
60509265 TATATATATA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
5 37 0.82
6 8 0.18
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:60509225 original size:8 final size:8
Alignment explanation
Indices: 60509212--60509269 Score: 64
Period size: 8 Copynumber: 7.0 Consensus size: 8
60509202 TGAGTTGTTA
60509212 TATTATAT
1 TATTATAT
*
60509220 TATTATAA
1 TATTATAT
60509228 TATTATAT
1 TATTATAT
60509236 TA-TATTAT
1 TATTA-TAT
*
60509244 TATAATATT
1 TATTATA-T
60509253 ATATTATAT
1 -TATTATAT
60509262 TATTATAT
1 TATTATAT
60509270 ATATAAAGCA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
7 2 0.05
8 31 0.74
9 3 0.07
10 6 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TATTATAT
Found at i:60509233 original size:21 final size:21
Alignment explanation
Indices: 60509209--60509273 Score: 121
Period size: 21 Copynumber: 3.0 Consensus size: 21
60509199 AAGTGAGTTG
60509209 TTATATTATATTATTATAATA
1 TTATATTATATTATTATAATA
60509230 TTATATTATATTATTATAATA
1 TTATATTATATTATTATAATA
60509251 TTATATTATATTATTATATATA
1 TTATATTATATTATTATA-ATA
60509273 T
1 T
60509274 AAAGCAAAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
21 39 0.91
22 4 0.09
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTATATTATATTATTATAATA
Found at i:60509551 original size:12 final size:13
Alignment explanation
Indices: 60509522--60509553 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
60509512 TGTAGCTTAT
60509522 ATTGAATTAGTGG
1 ATTGAATTAGTGG
60509535 A-TGAATTAGT-G
1 ATTGAATTAGTGG
60509546 ATTGAATT
1 ATTGAATT
60509554 GATGGAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 15 0.83
13 1 0.06
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.41
Consensus pattern (13 bp):
ATTGAATTAGTGG
Found at i:60510076 original size:10 final size:11
Alignment explanation
Indices: 60510051--60510083 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
60510041 TATTTATTTA
60510051 AAAAATAAAAT
1 AAAAATAAAAT
*
60510062 AAAAATAAAGT
1 AAAAATAAAAT
60510073 -AAAATAAAAT
1 AAAAATAAAAT
60510083 A
1 A
60510084 TTATGGAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:60510440 original size:27 final size:25
Alignment explanation
Indices: 60510384--60510441 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
60510374 ACTTTAGCGC
**
60510384 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTATTAGCACGTCAGT
60510409 GCTCTCTGA-TATTTAGCACGTCAGT
1 GCTCTCTGATTA-TTAGCACGTCAGT
60510434 GCTCTCTG
1 GCTCTCTG
60510442 TTCAGCACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 2 0.07
25 28 0.93
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTCAGT
Found at i:60510966 original size:16 final size:16
Alignment explanation
Indices: 60510945--60511012 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
60510935 TTTGGTTCGC
60510945 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
60510961 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
60510977 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
60510993 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
60511009 TGTA
1 TGTA
60511013 ATAGGAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:60511280 original size:17 final size:17
Alignment explanation
Indices: 60511240--60511379 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
60511230 AACATAATTA
60511240 TTATT-AAATATAT--T
1 TTATTAAAATATATAAT
*
60511254 TT-TTATAATATATAAT
1 TTATTAAAATATATAAT
60511270 TTGA-TAAAATATATGAAT
1 TT-ATTAAAATATAT-AAT
60511288 TTATTAAAAT-TATAAT
1 TTATTAAAATATATAAT
* * *
60511304 ATA-TAATATTATAAAAT
1 TTATTAA-AATATATAAT
* *
60511321 ATAATTTAAAATA-ATTA-
1 -TTA-TTAAAATATATAAT
60511338 TTATT--AA-ATATAAT
1 TTATTAAAATATATAAT
**
60511352 TTAACAAAAATATATAAT
1 TT-ATTAAAATATATAAT
*
60511370 TTAATAAAAT
1 TTATTAAAAT
60511380 TCTTAGTATT
Statistics
Matches: 92, Mismatches: 16, Indels: 33
0.65 0.11 0.23
Matches are distributed among these distances:
12 1 0.01
13 7 0.08
14 11 0.12
15 6 0.07
16 12 0.13
17 26 0.28
18 23 0.25
19 3 0.03
20 3 0.03
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (17 bp):
TTATTAAAATATATAAT
Found at i:60511307 original size:24 final size:22
Alignment explanation
Indices: 60511277--60511325 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 22
60511267 AATTTGATAA
60511277 AATATATGAAT-TTATTAAAATTAT
1 AATATAT-AATATTA-TAAAA-TAT
60511301 AATATATAATATTATAAAATAT
1 AATATATAATATTATAAAATAT
60511323 AAT
1 AAT
60511326 TTAAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 8 0.33
24 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATATAATATTATAAAATAT
Found at i:60511316 original size:15 final size:15
Alignment explanation
Indices: 60511296--60511351 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
60511286 ATTTATTAAA
*
60511296 ATTATAATATATAAT
1 ATTATAAAATATAAT
60511311 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
60511324 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
60511337 ATTATTAAATATAAT
1 ATTATAAAATATAAT
60511352 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:60511346 original size:26 final size:25
Alignment explanation
Indices: 60511306--60511368 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
60511296 ATTATAATAT
60511306 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
60511331 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATAAAATATAATTTAA-A
*
60511358 AAAATA-TATAA
1 ATAATATTATAA
60511369 TTTAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
27 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:60511423 original size:98 final size:99
Alignment explanation
Indices: 60511219--60511489 Score: 259
Period size: 108 Copynumber: 2.7 Consensus size: 99
60511209 TAAATAATTT
* * *** * *
60511219 AATCATATTTTAACATAATTATTATTAAATAT-ATTT-TTTATAATATATAATTTGATAAAATAT
1 AATCATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAAT-T
*
60511282 ATGAATTTATTAAAATTATAATATATAATATTATAA
65 ATGAATGTATTAAAATTAT-ATATATAATATTATAA
*
60511318 AAT-ATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAATTC
1 AATCATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAATTA
* *
60511382 T-TA-GTATTAAATATTCT-TATATGAAT-TTACTAA
66 TGAATGTATTAAA-ATTATATATAT-AATATTA-TAA
60511415 AATCATAATATATAATACTATAAAATTATTATTATTAAATATAATTTAACAAAAATATATAATTT
1 AATCATAAT-T-TAA-A--AT---A--ATTATTATTAAATATAATTTAACAAAAATATATAATTT
60511480 AATAAAATTA
56 AATAAAATTA
60511490 AATATTCTTA
Statistics
Matches: 144, Mismatches: 12, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
96 8 0.06
97 16 0.11
98 36 0.25
99 10 0.07
100 23 0.16
101 1 0.01
103 2 0.01
106 1 0.01
108 47 0.33
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (99 bp):
AATCATAATTTAAAATAATTATTATTAAATATAATTTAACAAAAATATATAATTTAATAAAATTA
TGAATGTATTAAAATTATATATATAATATTATAA
Found at i:60517021 original size:26 final size:26
Alignment explanation
Indices: 60516990--60517049 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
60516980 GAAGCTCCGG
*
60516990 AGAGCCATTAATTAGAAAGCTCACAA
1 AGAGCCATTAATCAGAAAGCTCACAA
* * *
60517016 AGAGCCTTTAATCAGGAAGCTCACGA
1 AGAGCCATTAATCAGAAAGCTCACAA
60517042 AGAGCCAT
1 AGAGCCAT
60517050 ATATCGGGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCAGAAAGCTCACAA
Found at i:60517366 original size:20 final size:20
Alignment explanation
Indices: 60517341--60517380 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
60517331 AGCAATTACA
60517341 CAATTC-ACATATATAATATT
1 CAATTCAACATATA-AATATT
60517361 CAATTCAAACATATAAATAT
1 CAATTC-AACATATAAATAT
60517381 AAACAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 5 0.28
22 7 0.39
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (20 bp):
CAATTCAACATATAAATATT
Found at i:60519649 original size:21 final size:20
Alignment explanation
Indices: 60519615--60519654 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
60519605 TTAAATCATC
*
60519615 AAAATTAAAATTGAGTGGTAG
1 AAAATCAAAATTGA-TGGTAG
*
60519636 AAAATCAAAGTTGATGGTA
1 AAAATCAAAATTGATGGTA
60519655 CATTTTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.47, C:0.03, G:0.23, T:0.28
Consensus pattern (20 bp):
AAAATCAAAATTGATGGTAG
Found at i:60523779 original size:17 final size:17
Alignment explanation
Indices: 60523757--60523802 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
60523747 AAAAATATTA
60523757 TAATTTTTCTTA-ATTTT
1 TAATTTTT-TTAGATTTT
60523774 TAATTTTTTTAGATTTT
1 TAATTTTTTTAGATTTT
60523791 TCAAGTTTTTTT
1 T-AA-TTTTTTT
60523803 TTGCTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 3 0.12
17 14 0.54
18 2 0.08
19 7 0.27
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (17 bp):
TAATTTTTTTAGATTTT
Found at i:60529088 original size:17 final size:17
Alignment explanation
Indices: 60529066--60529099 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
60529056 ATCCACTAAT
*
60529066 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
60529083 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
60529100 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:60533728 original size:17 final size:17
Alignment explanation
Indices: 60533706--60533739 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
60533696 ATCCACTAAT
*
60533706 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
60533723 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
60533740 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:60536207 original size:92 final size:91
Alignment explanation
Indices: 60536107--60536647 Score: 282
Period size: 92 Copynumber: 5.9 Consensus size: 91
60536097 TTTTCAACTA
* * *
60536107 TAGAGTATGGTGTTGTAATAATATTTTTTTTATTTTTCAGAATAATTATAATAATTCA-TATTTA
1 TAGAGTATGATGATGTAATAATATTTTTTTTATTTTTTAGAATAATTATAATAATT-AGTATTTA
*
60536171 CTTTATTTCATTTTCGAGGCATTTGAGT
65 -TTTATTTCATTTTCGAGGCATTTGAGC
* * * * * * *
60536199 TTGGGTATGATGATGCAATAAT-TTTTTTAAATTTTTTTTTGGAATAATTATAATAATAATTATT
1 TAGAGTATGATGATGTAATAATATTTTTT---TTATTTTTTAGAATAATTATAATAATTAGTATT
* * * *
60536263 TA-TTATATTCTATTTTTGGGGCCTTTGGGC
63 TATTTAT-TTC-ATTTTCGAGGCATTTGAGC
*** * * * *
60536293 TAGAGTCCAATGCTGTAATAATATTTTTATTATTTTTTAGAATAACTATCATAATTAGTATTTAT
1 TAGAGTATGATGATGTAATAATATTTTTTTTATTTTTTAGAATAATTATAATAATTAGTATTTA-
* * *
60536358 TTTATTTCATTTCCG-GAGCACTTGTGC
65 TTTATTTCATTTTCGAG-GCATTTGAGC
* ** * * * * * * * * *
60536385 CAGAGCCTGGTGTTGCAATATTATATTTATTATTTTCT-GAAATAGTTACAATAATTAGTATTTA
1 TAGAGTATGATGATGTAATAATATTTTTTTTATTTTTTAG-AATAATTATAATAATTAGTATTTA
60536449 TTTTATTTCATTTTCG-GGCAATTTGA-C
65 -TTTATTTCATTTTCGAGGC-ATTTGAGC
* * * * * * * * * *
60536476 TTGTGTCTGGTGGTGCAAT-AT-TTTTATTTTATTTTATGGAACAATTATAATAGTTA-T-TTTA
1 TAGAGTATGATGATGTAATAATATTTT-TTTTATTTTTTAGAATAATTATAATAATTAGTATTTA
* * * *
60536537 TTTTATTTTATTTTC-AGGGCACTTGGGT
65 -TTTATTTCATTTTCGA-GGCATTTGAGC
* * * * * * *
60536565 TTGAGTCA-G-TGAAGCAATAATATTTTTTTTAATTTTTTTTGGAGTAATTATAACAATTAGAAT
1 TAGAGT-ATGATGATGTAATAATATTTTTTTT-A--TTTTTTAGAATAATTATAATAATTAGTAT
60536628 TTATTTTATTTCATTTTCGA
62 TTA-TTTATTTCATTTTCGA
60536648 CACTTACATT
Statistics
Matches: 345, Mismatches: 78, Indels: 49
0.73 0.17 0.10
Matches are distributed among these distances:
88 29 0.08
89 19 0.06
90 28 0.08
91 26 0.08
92 150 0.43
93 7 0.02
94 80 0.23
95 6 0.02
ACGTcount: A:0.28, C:0.08, G:0.14, T:0.50
Consensus pattern (91 bp):
TAGAGTATGATGATGTAATAATATTTTTTTTATTTTTTAGAATAATTATAATAATTAGTATTTAT
TTATTTCATTTTCGAGGCATTTGAGC
Found at i:60536800 original size:80 final size:81
Alignment explanation
Indices: 60536707--60536886 Score: 224
Period size: 80 Copynumber: 2.2 Consensus size: 81
60536697 TTATAATAAA
* **
60536707 TATTTATTTTATTTAATTTCT-AGGGCACTTGGGCTTGAGTTAGGTGGTGCAATAAATTTTTT-A
1 TATTTATTTTATTTCATTTCTCAGGGCACTTGAACTTGAGTTAGGTGGTGCAAT-AATTTTTTCA
*
60536770 -TTTTCTAGAATAATTAT
65 TTTTTC-AGAACAATTAT
* * * *
60536787 TATTTATTCTATTTCATTT-TCGGGGCACTTGAACTTGAGTTTGGTGTTGCAATAATTTTTTCAT
1 TATTTATTTTATTTCATTTCTCAGGGCACTTGAACTTGAGTTAGGTGGTGCAATAATTTTTTCAT
*
60536851 TTTTCGGAACAATTAT
66 TTTTCAGAACAATTAT
*
60536867 TACTTATTTTATTTCATTTC
1 TATTTATTTTATTTCATTTC
60536887 CGAAACACTT
Statistics
Matches: 85, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
79 9 0.11
80 71 0.84
81 5 0.06
ACGTcount: A:0.24, C:0.11, G:0.15, T:0.51
Consensus pattern (81 bp):
TATTTATTTTATTTCATTTCTCAGGGCACTTGAACTTGAGTTAGGTGGTGCAATAATTTTTTCAT
TTTTCAGAACAATTAT
Found at i:60557928 original size:21 final size:21
Alignment explanation
Indices: 60557904--60557944 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
60557894 CATAACATAT
*
60557904 TTAAACCTAAATAAAAATAAC
1 TTAAACCAAAATAAAAATAAC
* *
60557925 TTAAATCAAAATAAATATAA
1 TTAAACCAAAATAAAAATAA
60557945 ACTAAGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (21 bp):
TTAAACCAAAATAAAAATAAC
Found at i:60562429 original size:31 final size:30
Alignment explanation
Indices: 60562354--60562437 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 30
60562344 CTGTACTTTG
* * *
60562354 CAATATTTAGTCCCTATAC-TTTTATTTGAT
1 CAAT-TTTAGTCCTTGTACTTTTTAATTGAT
*
60562384 CATTTTTAGT-CTTGTACTTTTTGAATTGAT
1 CAATTTTAGTCCTTGTACTTTTT-AATTGAT
60562414 CAATTTTAGTCCTTGTACTTTTTA
1 CAATTTTAGTCCTTGTACTTTTTA
60562438 TAATTTTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
28 5 0.11
29 10 0.22
30 19 0.41
31 12 0.26
ACGTcount: A:0.23, C:0.14, G:0.10, T:0.54
Consensus pattern (30 bp):
CAATTTTAGTCCTTGTACTTTTTAATTGAT
Found at i:60562450 original size:31 final size:31
Alignment explanation
Indices: 60562387--60562457 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
60562377 ATTTGATCAT
*
60562387 TTTTAGT-CTTGTACTTTTTGAATTGATCAA
1 TTTTAGTCCTTGTACTTTTTGAATTGATAAA
* *
60562417 TTTTAGTCCTTGTACTTTTTATAATT-TTAAA
1 TTTTAGTCCTTGTACTTTTT-GAATTGATAAA
60562448 TTTTAGTCCT
1 TTTTAGTCCT
60562458 AACTCAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 7 0.19
31 25 0.69
32 4 0.11
ACGTcount: A:0.23, C:0.11, G:0.10, T:0.56
Consensus pattern (31 bp):
TTTTAGTCCTTGTACTTTTTGAATTGATAAA
Found at i:60563803 original size:14 final size:15
Alignment explanation
Indices: 60563784--60563812 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
60563774 AGTTATTAAA
60563784 TTATTTAAA-AATTT
1 TTATTTAAATAATTT
60563798 TTATTTAAATAATTT
1 TTATTTAAATAATTT
60563813 GGTTGTTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATTTAAATAATTT
Found at i:60566368 original size:17 final size:18
Alignment explanation
Indices: 60566348--60566381 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
60566338 TTTATATATA
*
60566348 TATTTTTAAAAT-TTTAC
1 TATTTGTAAAATATTTAC
60566365 TATTTGTAAAATATTTA
1 TATTTGTAAAATATTTA
60566382 TTTTGGAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
TATTTGTAAAATATTTAC
Found at i:60572366 original size:15 final size:17
Alignment explanation
Indices: 60572334--60572366 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
60572324 CAATTATTTA
60572334 ATTTTTTATTAAAGAAT
1 ATTTTTTATTAAAGAAT
60572351 ATTTTTT-TTAAA-AAT
1 ATTTTTTATTAAAGAAT
60572366 A
1 A
60572367 ATGATTGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 5 0.31
17 7 0.44
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTTTTTATTAAAGAAT
Found at i:60586682 original size:29 final size:30
Alignment explanation
Indices: 60586640--60586707 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
60586630 TAATAAAAAT
*
60586640 AAAATTATACTTTAATCCTTT-AAAATTATA
1 AAAATT-TAATTTAATCCTTTAAAAATTATA
*
60586670 AAAATTTAATTTAATCTTTTAAAAATTATA
1 AAAATTTAATTTAATCCTTTAAAAATTATA
*
60586700 AAATTTTA
1 AAAATTTA
60586708 TAATATTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 12 0.35
30 22 0.65
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (30 bp):
AAAATTTAATTTAATCCTTTAAAAATTATA
Found at i:60587030 original size:22 final size:22
Alignment explanation
Indices: 60587002--60587056 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
60586992 ATGTTAGTGA
60587002 ATTTTGAGTTAATTAAATAGAGT
1 ATTTTGAGTTAATTAAATA-AGT
*
60587025 -TTTTGAGATAAATTAAATAAGT
1 ATTTTGAG-TTAATTAAATAAGT
*
60587047 AATTTGAGTT
1 ATTTTGAGTT
60587057 TTGAATCTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (22 bp):
ATTTTGAGTTAATTAAATAAGT
Found at i:60587228 original size:19 final size:19
Alignment explanation
Indices: 60587206--60587247 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
60587196 CAAAAAATTA
*
60587206 AAATAATTT-TAAAAATTTC
1 AAAT-ATTTATAAAAATTCC
*
60587225 AAATATTTATGAAAATTCC
1 AAATATTTATAAAAATTCC
60587244 AAAT
1 AAAT
60587248 TTATATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.38
Consensus pattern (19 bp):
AAATATTTATAAAAATTCC
Found at i:60593419 original size:18 final size:19
Alignment explanation
Indices: 60593383--60593421 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
60593373 ATTTGGGCGA
60593383 TTTTTTAGTTATGGGTTCGAT
1 TTTTTTAGTTAT--GTTCGAT
60593404 TTTTTTAGTTAT-TTCGAT
1 TTTTTTAGTTATGTTCGAT
60593422 CAATTATCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
21 12 0.67
ACGTcount: A:0.15, C:0.05, G:0.18, T:0.62
Consensus pattern (19 bp):
TTTTTTAGTTATGTTCGAT
Found at i:60593513 original size:19 final size:22
Alignment explanation
Indices: 60593477--60593518 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
60593467 AACTTAATTT
60593477 AATATATTTTAAATATTT-TAA
1 AATATATTTTAAATATTTATAA
*
60593498 AATATA-TTTATA-ATTTATAA
1 AATATATTTTAAATATTTATAA
60593518 A
1 A
60593519 GTAAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATATATTTTAAATATTTATAA
Found at i:60598535 original size:28 final size:28
Alignment explanation
Indices: 60598495--60598548 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
60598485 AATAAATTTG
* *
60598495 AAATAAAATATTTGTCTT-TTTTTTTATA
1 AAATAAAACATTTAT-TTATTTTTTTATA
60598523 AAATAAAACATTTATTTATTTTTTTA
1 AAATAAAACATTTATTTATTTTTTTA
60598549 AATCTAACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.09
28 21 0.91
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (28 bp):
AAATAAAACATTTATTTATTTTTTTATA
Found at i:60604228 original size:20 final size:20
Alignment explanation
Indices: 60604190--60604228 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
60604180 ATAAAGGTAA
* * *
60604190 TAAAATATGTATAATAAAAT
1 TAAAATATATAAAAGAAAAT
60604210 TAAAATATATAAAAGAAAA
1 TAAAATATATAAAAGAAAA
60604229 GCTTTAGTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (20 bp):
TAAAATATATAAAAGAAAAT
Found at i:60629087 original size:341 final size:341
Alignment explanation
Indices: 60628464--60629384 Score: 1478
Period size: 341 Copynumber: 2.7 Consensus size: 341
60628454 GTATACGAAT
* * ** * * *
60628464 AGTGCT-AAAATTAACTTTTCCTAGTTCCTCTACCTCAGTTAGAGCAGACTGAACTTCTTCTTTA
1 AGTGCTCAAAATTAGCTTTTCCTGGTAACTCTACCTCAGTAAGAGCAGATTGAACTTCTTCTTCA
* * *
60628528 CCGAGGCCAGGACTTGTCATGTTCCCACCATCGACACAGCCTGCGGAACCATTCATTGGCCCAGT
66 ACGAGGCCAGGACTTGTCATGTTCCCACCATCGACACAGCCTGCAGAACCTTTCATTGGCCCAGT
* * * *
60628593 AG---AA--AG-TTGCAAACGTATTCTTCTTGGAGCAATGGCTTGGTTTACAATATTCTTCTCTG
131 AGAAAAATTAGTTTGCAAGCGTATTCTTCTTGGAGCAGTGCCTTGATTTACAATATTCTTCTCTG
* *
60628652 ACTCATCAGAGCTAGAAGTCTGTCCTGCAGCTTCAGCTTCTGTGACCTGCATTTAAAGTATTGGA
196 ACTCATCAGAGCTAGAAGTCTGTCCTGCAGCTTCAGCTTCTGTGACCTGCATTCAAAATATTGGA
*
60628717 AGATATTGTTCACTTTGAGAAATGTATTTCAGTGTACTAATATTATAATTTGGCCTTTGGCAGTA
261 AGATATTGTTCACTTTGAGAAATGTATTTCAGTGTACTAATATTATAATTTGGCCTTTAGCAGTA
60628782 AAAACAGTATATCAAC
326 AAAACAGTATATCAAC
60628798 AGTGCTCAAAATTAGCTTTTCCTGGTAACTCTACCTCAGTAAGAGCAGATTGAACTTCTTCTTCA
1 AGTGCTCAAAATTAGCTTTTCCTGGTAACTCTACCTCAGTAAGAGCAGATTGAACTTCTTCTTCA
* * * *
60628863 ACGAGGCCAGGACTTGTCATGCTCCCACCATCGACACAGCCTACAGAACCTTTCATTGGTCTAGT
66 ACGAGGCCAGGACTTGTCATGTTCCCACCATCGACACAGCCTGCAGAACCTTTCATTGGCCCAGT
*
60628928 AGAAAAATTAGTTTGCAAGCGTATTCTTCTTGGAGCAGTGCCTTGATTTACAATATTCTTCTCTA
131 AGAAAAATTAGTTTGCAAGCGTATTCTTCTTGGAGCAGTGCCTTGATTTACAATATTCTTCTCTG
* * *
60628993 ACTCATCTGAGCTAGAAGTCAGTCCAGCAGCTTCAGCTTCTGTGACCTGCATTCAAAATATTGGA
196 ACTCATCAGAGCTAGAAGTCTGTCCTGCAGCTTCAGCTTCTGTGACCTGCATTCAAAATATTGGA
60629058 AGATATTGTTCACTTTGAGAAATGTATTTCAGTGTACTAATATTATAATTTGGCCTTTAGCAGTA
261 AGATATTGTTCACTTTGAGAAATGTATTTCAGTGTACTAATATTATAATTTGGCCTTTAGCAGTA
60629123 AAAACAGTATATCAAC
326 AAAACAGTATATCAAC
60629139 AGTGCTCAAAATTAGCTTTTCCTGGTAACTCTACCTCAGTAAGAGCAGATTGAACTTCTTCTTCA
1 AGTGCTCAAAATTAGCTTTTCCTGGTAACTCTACCTCAGTAAGAGCAGATTGAACTTCTTCTTCA
* * * *
60629204 ACGAGGCCAGGACTAGTCATGTTCCCACCATTGGCACAGCCTGCAGAACCTTTCATTGCCCCAGT
66 ACGAGGCCAGGACTTGTCATGTTCCCACCATCGACACAGCCTGCAGAACCTTTCATTGGCCCAGT
** * * *
60629269 AGAAAGTTTCGTTTGCAAGTGTATTCTTCTTGGTGCAGTGCCTTGATTTACAATATTCTTCTCTG
131 AGAAAAATTAGTTTGCAAGCGTATTCTTCTTGGAGCAGTGCCTTGATTTACAATATTCTTCTCTG
*
60629334 ACTCATCAGAGCTAGAAGTCTGTTCTGCAGCTTCAGCTTCTGTGACCTGCA
196 ACTCATCAGAGCTAGAAGTCTGTCCTGCAGCTTCAGCTTCTGTGACCTGCA
60629385 AACGAAAAAG
Statistics
Matches: 537, Mismatches: 43, Indels: 7
0.91 0.07 0.01
Matches are distributed among these distances:
334 6 0.01
335 111 0.21
338 2 0.00
340 2 0.00
341 416 0.77
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (341 bp):
AGTGCTCAAAATTAGCTTTTCCTGGTAACTCTACCTCAGTAAGAGCAGATTGAACTTCTTCTTCA
ACGAGGCCAGGACTTGTCATGTTCCCACCATCGACACAGCCTGCAGAACCTTTCATTGGCCCAGT
AGAAAAATTAGTTTGCAAGCGTATTCTTCTTGGAGCAGTGCCTTGATTTACAATATTCTTCTCTG
ACTCATCAGAGCTAGAAGTCTGTCCTGCAGCTTCAGCTTCTGTGACCTGCATTCAAAATATTGGA
AGATATTGTTCACTTTGAGAAATGTATTTCAGTGTACTAATATTATAATTTGGCCTTTAGCAGTA
AAAACAGTATATCAAC
Found at i:60635971 original size:127 final size:127
Alignment explanation
Indices: 60635759--60636013 Score: 474
Period size: 127 Copynumber: 2.0 Consensus size: 127
60635749 TTGATCCAGC
* *
60635759 TTTTTACCTCTCTCTCTAATGTTGGGAAAACTAACAACTCATGTTATAATTAAATCTCGAATTAA
1 TTTTTACCTCTCCCTCTAATGTTGGGAAAACTAACAACTCATGTTATAATTAAATCTCAAATTAA
60635824 TAGCTCAAATATTATGAGGAGACTCATATAAATATACATTCCCAATATTTTATTATGACCTA
66 TAGCTCAAATATTATGAGGAGACTCATATAAATATACATTCCCAATATTTTATTATGACCTA
* *
60635886 TTTTTACCTCTCCCTCTAATGTTGGTAAAACTGACAACTCATGTTATAATTAAATCTCAAATTAA
1 TTTTTACCTCTCCCTCTAATGTTGGGAAAACTAACAACTCATGTTATAATTAAATCTCAAATTAA
60635951 TAGCTCAAATATTATGAGGAGACTCATATAAATATACATTCCCAATATTTTATTATGACCTA
66 TAGCTCAAATATTATGAGGAGACTCATATAAATATACATTCCCAATATTTTATTATGACCTA
60636013 T
1 T
60636014 ATTTGTGTGT
Statistics
Matches: 124, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
127 124 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.37
Consensus pattern (127 bp):
TTTTTACCTCTCCCTCTAATGTTGGGAAAACTAACAACTCATGTTATAATTAAATCTCAAATTAA
TAGCTCAAATATTATGAGGAGACTCATATAAATATACATTCCCAATATTTTATTATGACCTA
Found at i:60636640 original size:26 final size:26
Alignment explanation
Indices: 60636604--60636662 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
60636594 ACATATGAGA
60636604 ATTCTTTTAAATTAAAGAATCTTCTG
1 ATTCTTTTAAATTAAAGAATCTTCTG
*
60636630 ATTCTTTTAAATTAAAGAATGTTCTG
1 ATTCTTTTAAATTAAAGAATCTTCTG
60636656 ATTCTTT
1 ATTCTTT
60636663 AATAAATGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.49
Consensus pattern (26 bp):
ATTCTTTTAAATTAAAGAATCTTCTG
Found at i:60638322 original size:18 final size:18
Alignment explanation
Indices: 60638269--60638315 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
60638259 GAGAGACGGG
*
60638269 GAGAATA-AAAAACAA-A
1 GAGAATATAAAAGCAATA
* *
60638285 GAAAATATGAAAGCAATA
1 GAGAATATAAAAGCAATA
60638303 GAGAATATAAAAG
1 GAGAATATAAAAG
60638316 AAGTAGATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
16 6 0.25
17 6 0.25
18 12 0.50
ACGTcount: A:0.66, C:0.04, G:0.17, T:0.13
Consensus pattern (18 bp):
GAGAATATAAAAGCAATA
Found at i:60647244 original size:21 final size:20
Alignment explanation
Indices: 60647218--60647256 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
60647208 AAAAAAGATG
60647218 CGTAGAATTGAAGCTTGGATA
1 CGTAGAATTGAAG-TTGGATA
60647239 CGTAGAATTGAAGTTGGA
1 CGTAGAATTGAAGTTGGA
60647257 ATCTATGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (20 bp):
CGTAGAATTGAAGTTGGATA
Found at i:60654012 original size:26 final size:26
Alignment explanation
Indices: 60653972--60654028 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
60653962 AATTAATATT
* *
60653972 AAAA-AACAAAACATTTTAATTACAC
1 AAAATAACAAAACATTTAAATTACAA
*
60653997 AAAATAACAAAGCATTTAAATTACAA
1 AAAATAACAAAACATTTAAATTACAA
60654023 AAAATA
1 AAAATA
60654029 GCATTTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 4 0.14
26 24 0.86
ACGTcount: A:0.63, C:0.12, G:0.02, T:0.23
Consensus pattern (26 bp):
AAAATAACAAAACATTTAAATTACAA
Found at i:60657266 original size:19 final size:20
Alignment explanation
Indices: 60657220--60657266 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
60657210 ACCCGATTCT
*
60657220 ATATAAAAATTATTTTAAAA
1 ATATAAAAATTATCTTAAAA
*
60657240 A-ATCAAAATTA-CTTAAAA
1 ATATAAAAATTATCTTAAAA
60657258 ATATAAAAA
1 ATATAAAAA
60657267 ATTGAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 7 0.30
19 15 0.65
20 1 0.04
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (20 bp):
ATATAAAAATTATCTTAAAA
Found at i:60657380 original size:23 final size:23
Alignment explanation
Indices: 60657347--60657393 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
60657337 TATTACAGAT
60657347 ACTTGTAAAATAGACTCTGGTGC
1 ACTTGTAAAATAGACTCTGGTGC
*
60657370 ACTTGTGAAATAGACTCTGGTGC
1 ACTTGTAAAATAGACTCTGGTGC
60657393 A
1 A
60657394 TTTTTCTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (23 bp):
ACTTGTAAAATAGACTCTGGTGC
Found at i:60657626 original size:18 final size:18
Alignment explanation
Indices: 60657590--60657624 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
60657580 AAAACCAAGA
60657590 ATTTTGTTTAATGTTTTT
1 ATTTTGTTTAATGTTTTT
*
60657608 ATTTT-TTTTATGTTTTT
1 ATTTTGTTTAATGTTTTT
60657625 TAAAGAATGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77
Consensus pattern (18 bp):
ATTTTGTTTAATGTTTTT
Found at i:60659498 original size:24 final size:21
Alignment explanation
Indices: 60659450--60659508 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 21
60659440 AATATGCTTG
*
60659450 GTTTTTTATTTATTTCTTTTT
1 GTTTTTAATTTATTTCTTTTT
60659471 -TTTTTAATTTATTTCATTATTCT
1 GTTTTTAATTTATTTC-TT-TT-T
* *
60659494 GTTTTAAATATATTT
1 GTTTTTAATTTATTT
60659509 AATTTTACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 14 0.45
21 2 0.06
22 2 0.06
23 1 0.03
24 12 0.39
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.71
Consensus pattern (21 bp):
GTTTTTAATTTATTTCTTTTT
Found at i:60659627 original size:22 final size:23
Alignment explanation
Indices: 60659551--60659633 Score: 98
Period size: 22 Copynumber: 3.7 Consensus size: 23
60659541 CTTAATATAT
* *
60659551 TTTTAAACTTATCATCAATATTA
1 TTTTAAATTTATCATAAATATTA
* *
60659574 TTTT-AATTTATAATATATTATTA
1 TTTTAAATTTATCATA-AATATTA
*
60659597 TTTTCAATTTATCATAAATA-TA
1 TTTTAAATTTATCATAAATATTA
60659619 TTTTAAATTTATCAT
1 TTTTAAATTTATCAT
60659634 GTATTTTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
22 24 0.47
23 17 0.33
24 10 0.20
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (23 bp):
TTTTAAATTTATCATAAATATTA
Found at i:60659676 original size:25 final size:24
Alignment explanation
Indices: 60659551--60659703 Score: 118
Period size: 25 Copynumber: 6.5 Consensus size: 24
60659541 CTTAATATAT
* * *
60659551 TTTTAAACTTATCAT-CAATATTA
1 TTTTAAATTTATCATGTATTATTA
* *
60659574 TTTT-AATTTATAATATATTATTA
1 TTTTAAATTTATCATGTATTATTA
* * *
60659597 TTTTCAATTTATCAT-AAATA-TA
1 TTTTAAATTTATCATGTATTATTA
* *
60659619 TTTTAAATTTATCATGTATTTTTT
1 TTTTAAATTTATCATGTATTATTA
*
60659643 TATTTAAATTCATCATGTATTATTA
1 T-TTTAAATTTATCATGTATTATTA
* * *
60659668 TTTTAAAATTTATCGTCTATGATTA
1 TTTT-AAATTTATCATGTATTATTA
*
60659693 -TTTAGATTTAT
1 TTTTAAATTTAT
60659704 TGTGTATTTA
Statistics
Matches: 104, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
22 24 0.23
23 26 0.25
24 17 0.16
25 37 0.36
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.56
Consensus pattern (24 bp):
TTTTAAATTTATCATGTATTATTA
Found at i:60659967 original size:24 final size:24
Alignment explanation
Indices: 60659940--60659985 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
60659930 ATTTAAATTC
*
60659940 TCTTTTAAATATGTTTATATATCT
1 TCTTTTAAATATATTTATATATCT
*
60659964 TCTTTTAAATCTATTTATATAT
1 TCTTTTAAATATATTTATATAT
60659986 ATAATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (24 bp):
TCTTTTAAATATATTTATATATCT
Found at i:60668816 original size:24 final size:24
Alignment explanation
Indices: 60668784--60668842 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
60668774 TCCAGTACTT
*
60668784 CTGCCTTCGGTG-CTGCAAGCACTC
1 CTGCCTTCGGTGTC-ACAAGCACTC
*
60668808 CTGCTTTCGGTGTCACAAGCACTC
1 CTGCCTTCGGTGTCACAAGCACTC
60668832 CTGCCTTCGGT
1 CTGCCTTCGGT
60668843 TCAACTGGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 30 0.97
25 1 0.03
ACGTcount: A:0.12, C:0.36, G:0.24, T:0.29
Consensus pattern (24 bp):
CTGCCTTCGGTGTCACAAGCACTC
Found at i:60668994 original size:21 final size:21
Alignment explanation
Indices: 60668968--60669042 Score: 62
Period size: 21 Copynumber: 3.4 Consensus size: 21
60668958 CTCTCACTCA
60668968 TGCTTTTGGAGCATCAAATTC
1 TGCTTTTGGAGCATCAAATTC
* *
60668989 TGCTTTTGGCA-CTTCCAAGACTCC
1 TGCTTTTGG-AGCAT-CAA-A-TTC
* **
60669013 TGTTTTTGGAGTGTCAAATTC
1 TGCTTTTGGAGCATCAAATTC
60669034 TGCTTTTGG
1 TGCTTTTGG
60669043 CTTTTCCGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
21 21 0.50
22 5 0.12
23 5 0.12
24 11 0.26
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.41
Consensus pattern (21 bp):
TGCTTTTGGAGCATCAAATTC
Found at i:60669002 original size:45 final size:45
Alignment explanation
Indices: 60668945--60669072 Score: 132
Period size: 45 Copynumber: 2.8 Consensus size: 45
60668935 AAGCGCACCA
*
60668945 GCTTTTGGCACTTCTC-TCACTCATGCTTTTGGAGCATCAAATTCT
1 GCTTTTGGCACTTC-CAACACTCATGCTTTTGGAGCATCAAATTCT
* * * **
60668990 GCTTTTGGCACTTCCAAGACTCCTGTTTTTGGAGTGTCAAATTCT
1 GCTTTTGGCACTTCCAACACTCATGCTTTTGGAGCATCAAATTCT
** * * * *
60669035 GCTTTTGGCTTTTCCGACACTCCTACTTTTGGATCATC
1 GCTTTTGGCACTTCCAACACTCATGCTTTTGGAGCATC
60669073 TTCTACTCCT
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
44 1 0.01
45 66 0.99
ACGTcount: A:0.16, C:0.26, G:0.17, T:0.41
Consensus pattern (45 bp):
GCTTTTGGCACTTCCAACACTCATGCTTTTGGAGCATCAAATTCT
Found at i:60669885 original size:21 final size:21
Alignment explanation
Indices: 60669859--60669933 Score: 62
Period size: 21 Copynumber: 3.4 Consensus size: 21
60669849 CTCTCACTCA
60669859 TGCTTTTGGAGCATCAAATTC
1 TGCTTTTGGAGCATCAAATTC
* *
60669880 TGCTTTTGGCA-CTTCCAAGACTCC
1 TGCTTTTGG-AGCAT-CAA-A-TTC
* **
60669904 TGTTTTTGGAGTGTCAAATTC
1 TGCTTTTGGAGCATCAAATTC
60669925 TGCTTTTGG
1 TGCTTTTGG
60669934 CTTTTCCGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
21 21 0.50
22 5 0.12
23 5 0.12
24 11 0.26
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.41
Consensus pattern (21 bp):
TGCTTTTGGAGCATCAAATTC
Found at i:60669948 original size:45 final size:45
Alignment explanation
Indices: 60669836--60669963 Score: 132
Period size: 45 Copynumber: 2.8 Consensus size: 45
60669826 AAGCGCACCA
* *
60669836 GCTTTTGGCACTTCTC-TCACTCATGCTTTTGGAGCATCAAATTCT
1 GCTTTTGGCACTTC-CAACACTCCTGCTTTTGGAGCATCAAATTCT
* * **
60669881 GCTTTTGGCACTTCCAAGACTCCTGTTTTTGGAGTGTCAAATTCT
1 GCTTTTGGCACTTCCAACACTCCTGCTTTTGGAGCATCAAATTCT
** * ** *
60669926 GCTTTTGGCTTTTCCGACACTCCCACTTTTGGATCATC
1 GCTTTTGGCACTTCCAACACTCCTGCTTTTGGAGCATC
60669964 TTCTACTCCT
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
44 1 0.02
45 65 0.98
ACGTcount: A:0.16, C:0.27, G:0.17, T:0.40
Consensus pattern (45 bp):
GCTTTTGGCACTTCCAACACTCCTGCTTTTGGAGCATCAAATTCT
Found at i:60670601 original size:891 final size:892
Alignment explanation
Indices: 60668880--60672452 Score: 6925
Period size: 891 Copynumber: 4.0 Consensus size: 892
60668870 ACTGGAACTG
* *
60668880 CATTTGGTGTGTCAAATTCCCCGGTATTTGGAACAGTAGGCACATTTGGAGCATCAAGCGCACCA
1 CATTTGGTGTATCTAATTCCCCGGTATTTGGAACAGTAGGCACATTTGGAGCATCAAGCGCACCA
60668945 GCTTTTGGCACTTCTCTCACTCATGCTTTTGGAGCATCAAATTCTGCTTTTGGCACTTCCAAGAC
66 GCTTTTGGCACTTCTCTCACTCATGCTTTTGGAGCATCAAATTCTGCTTTTGGCACTTCCAAGAC
60669010 TCCTGTTTTTGGAGTGTCAAATTCTGCTTTTGGCTTTTCCGACACTCCTACTTTTGGATCATCTT
131 TCCTGTTTTTGGAGTGTCAAATTCTGCTTTTGGCTTTTCCGACACTCCTACTTTTGGATCATCTT
60669075 CTACTCCTTCATTCAGCTCTGGGTCTAGCCCTGCTTTTGGCCAATCAACACCAGCATTTGCCAGT
196 CTACTCCTTCATTCAGCTCTGGGTCTAGCCCTGCTTTTGGCCAATCAACACCAGCATTTGCCAGT
60669140 AGTCCTTTTGGAACAACTACAATTGGAGCACAGAGTTCTTTTGGTGAGTAACCAAGCCTACTTGA
261 AGTCCTTTTGGAACAACTACAATTGGAGCACAGAGTTCTTTTGGTGAGTAACCAAGCCTACTTGA
60669205 TCATAGACTTCGAAACTACTTGTACAGTTAGGCAGAAATATATATTTTCATGGGCCTTACATGAT
326 TCATAGACTTCGAAACTACTTGTACAGTTAGGCAGAAATATATATTTTCATGGGCCTTACATGAT
60669270 TTAAGGTCAAGGGAGTTCGTATACGTATACATATATATATTATTTAAAATTCTTTGAGTTCTCAT
391 TTAAGGTCAAGGGAGTTCGTATACGTATACATATATATATTATTTAAAATTCTTTGAGTTCTCAT
60669335 GTAGGACCCCAATCTTCTGCACCAGCATTTGGACAGTCAACTTTTGGGGCTCAACGTGGGGGAAG
456 GTAGGACCCCAATCTTCTGCACCAGCATTTGGACAGTCAACTTTTGGGGCTCAACGTGGGGGAAG
60669400 AAGAGTTGCTTCTTACACGCCTACAATTGACGCTGATAGTAGCATTGGTACACAGATGTTCGAGT
521 AAGAGTTGCTTCTTACACGCCTACAATTGACGCTGATAGTAGCATTGGTACACAGATGTTCGAGT
60669465 CAATTTCAGCTATGCCTGTTTACAAAGATAAAAGTCATGAGGAGCTGAGATGGGAGGATTATCAA
586 CAATTTCAGCTATGCCTGTTTACAAAGATAAAAGTCATGAGGAGCTGAGATGGGAGGATTATCAA
60669530 TTAGGAGATAAAGGTACCTTTGTAAAATATTAAGAAAACCTGGAAGTTATTCATTATTCTTTCCC
651 TTAGGAGATAAAGGTACCTTTGTAAAATATTAAGAAAACCTGGAAGTTATTCATTATTCTTTCCC
60669595 A-TTCATTATCGACTAACTTGCTGTAATAATTTGACTGTCAGTTGGACTGCAGCCAACCGCTCAG
716 AGTTCATTATCGACTAACTTGCTGTAATAATTTGACTGTCAGTTGGACTGCAGCCAACCGCTCAG
60669659 CCTTCTGGAGAGATTTGCTCTGGTGTGTCAACTGCACCTACAAGTCCTTGTGGCTCTTCTCCAAC
781 CCTTCTGGAGAGATTTGCTCTGGTGTGTCAACTGCACCTACAAGTCCTTGTGGCTCTTCTCCAAC
60669724 ATTTGGCCAAACATCTGTAAATCCTCATTCCATCACAAGTACCAATC
846 ATTTGGCCAAACATCTGTAAATCCTCATTCCATCACAAGTACCAATC
60669771 CATTTGGTGTATCTAATTCCCCGGTATTTGGAACAGTAGGCACATTTGGAGCATCAAGCGCACCA
1 CATTTGGTGTATCTAATTCCCCGGTATTTGGAACAGTAGGCACATTTGGAGCATCAAGCGCACCA
60669836 GCTTTTGGCACTTCTCTCACTCATGCTTTTGGAGCATCAAATTCTGCTTTTGGCACTTCCAAGAC
66 GCTTTTGGCACTTCTCTCACTCATGCTTTTGGAGCATCAAATTCTGCTTTTGGCACTTCCAAGAC
*
60669901 TCCTGTTTTTGGAGTGTCAAATTCTGCTTTTGGCTTTTCCGACACTCCCACTTTTGGATCATCTT
131 TCCTGTTTTTGGAGTGTCAAATTCTGCTTTTGGCTTTTCCGACACTCCTACTTTTGGATCATCTT
60669966 CTACTCCTTCATTCAGCTCTGGGTCTAGCCCTGCTTTTGGCCAATCAACACCAGCATTTGCCAGT
196 CTACTCCTTCATTCAGCTCTGGGTCTAGCCCTGCTTTTGGCCAATCAACACCAGCATTTGCCAGT
60670031 AGTCCTTTTGGAACAACTACAATTGGAGCACAGAGTTCTTTTGGTGAGTAACCAAGCCTACTTGA
261 AGTCCTTTTGGAACAACTACAATTGGAGCACAGAGTTCTTTTGGTGAGTAACCAAGCCTACTTGA
* *
60670096 TCATAGAATTCGAAACTACTTGTTCAGTTAGGCAGAAATATATATTTTCATGGGCCTTACATGAT
326 TCATAGACTTCGAAACTACTTGTACAGTTAGGCAGAAATATATATTTTCATGGGCCTTACATGAT
60670161 TTAAGGTCAAGGGAGTTCGTATACGTATACATATATATATTATTTAAAATTCTTTGAGTTCTCAT
391 TTAAGGTCAAGGGAGTTCGTATACGTATACATATATATATTATTTAAAATTCTTTGAGTTCTCAT
60670226 GTAGGACCCCAATCTTCTGCACCAGCATTTGGACAGTCAACTTTTGGGGCTCAACGTGGGGGAAG
456 GTAGGACCCCAATCTTCTGCACCAGCATTTGGACAGTCAACTTTTGGGGCTCAACGTGGGGGAAG
*
60670291 AAGAGTTGCTTCTTACACACCTACAATTGACGCTGATAGTAGCATTGGTACACAGATGTTCGAGT
521 AAGAGTTGCTTCTTACACGCCTACAATTGACGCTGATAGTAGCATTGGTACACAGATGTTCGAGT
60670356 CAATTTCAGCTATGCCTGTTTACAAAGATAAAAGTCATGAGGAGCTGAGATGGGAGGATTATCAA
586 CAATTTCAGCTATGCCTGTTTACAAAGATAAAAGTCATGAGGAGCTGAGATGGGAGGATTATCAA
60670421 TTAGGAGATAAAGGTACCTTTGTAAAATATTAAGAAAACCTGGAAGTTATTCATTATTCTTTCCC
651 TTAGGAGATAAAGGTACCTTTGTAAAATATTAAGAAAACCTGGAAGTTATTCATTATTCTTTCCC
60670486 A-TTCATTATCGACTAACTTGCTGTAATAATTTGACTGTCAGTTGGACTGCAGCCAACCGCTCAG
716 AGTTCATTATCGACTAACTTGCTGTAATAATTTGACTGTCAGTTGGACTGCAGCCAACCGCTCAG
60670550 CCTTCTGGAGAGATTTGCTCTGGTGTGTCAACTGCACCTACAAGTCCTTGTGGCTCTTCTCCAAC
781 CCTTCTGGAGAGATTTGCTCTGGTGTGTCAACTGCACCTACAAGTCCTTGTGGCTCTTCTCCAAC
60670615 ATTTGGCCAAACATCTGTAAATCCTCATTCCATCACAAGTACCAATC
846 ATTTGGCCAAACATCTGTAAATCCTCATTCCATCACAAGTACCAATC
*
60670662 CATTTGGTGTATCTAATTCCCCGGTATTTGGAACAGTAGGCACATTTGAAGCATCAAGCGCACCA
1 CATTTGGTGTATCTAATTCCCCGGTATTTGGAACAGTAGGCACATTTGGAGCATCAAGCGCACCA
*
60670727 GCTTTTGGCACTTCTCTCACTCATGCTGTTGGAGCATCAAATTCTGCTTTTGGCACTTCCAAGAC
66 GCTTTTGGCACTTCTCTCACTCATGCTTTTGGAGCATCAAATTCTGCTTTTGGCACTTCCAAGAC
*
60670792 TCCTGTTTTTGGAGTGTCAAATTCTGCTTTTGGCGTTTCCGACACTCCTACTTTTGGATCATCTT
131 TCCTGTTTTTGGAGTGTCAAATTCTGCTTTTGGCTTTTCCGACACTCCTACTTTTGGATCATCTT
60670857 CTACTCCTTCATTCAGCTCTGGGTCTAGCCCTGCTTTTGGCCAATCAACACCAGCATTTGCCAGT
196 CTACTCCTTCATTCAGCTCTGGGTCTAGCCCTGCTTTTGGCCAATCAACACCAGCATTTGCCAGT
60670922 AGTCCTTTTGGAACAACTACAATTGGAGCACAGAGTTCTTTTGGTGAGTAACCAAGCCTACTTGA
261 AGTCCTTTTGGAACAACTACAATTGGAGCACAGAGTTCTTTTGGTGAGTAACCAAGCCTACTTGA
*
60670987 TCATAGACTTCGAAACTACTTGTACGGTTAGGCAGAAATATATATTTTCATGGGCCTTACATGAT
326 TCATAGACTTCGAAACTACTTGTACAGTTAGGCAGAAATATATATTTTCATGGGCCTTACATGAT
60671052 TTAAGGTCAAGGGAGTTCGTATACGTATACATATATATATTATTTAAAATTCTTTGAGTTCTCAT
391 TTAAGGTCAAGGGAGTTCGTATACGTATACATATATATATTATTTAAAATTCTTTGAGTTCTCAT
* *
60671117 GTAAGACCCCGATCTTCTGCACCAGCATTTGGACAGTCAACTTTTGGGGCTCAACGTGGGGGAAG
456 GTAGGACCCCAATCTTCTGCACCAGCATTTGGACAGTCAACTTTTGGGGCTCAACGTGGGGGAAG
*
60671182 AAGAGTTGCTTCTTACACGCCTACAATTGACGCTGATAGTAGCATTGGTACACAGATGTTTGAGT
521 AAGAGTTGCTTCTTACACGCCTACAATTGACGCTGATAGTAGCATTGGTACACAGATGTTCGAGT
60671247 CAATTTCAGCTATGCCTGTTTACAAAGATAAAAGTCATGAGGAGCTGAGATGGGAGGATTATCAA
586 CAATTTCAGCTATGCCTGTTTACAAAGATAAAAGTCATGAGGAGCTGAGATGGGAGGATTATCAA
60671312 TTAGGAGATAAAGGTACCTTTGTAAAATATTAAGAAAACCTGGAAGTTATTCATTATTCTTTCCC
651 TTAGGAGATAAAGGTACCTTTGTAAAATATTAAGAAAACCTGGAAGTTATTCATTATTCTTTCCC
*
60671377 ATGTTCATTATCGACTAACTTGCTGTAATAATTTGACTGTCAGTTGGATTGCAGCCAACCGCTCA
716 A-GTTCATTATCGACTAACTTGCTGTAATAATTTGACTGTCAGTTGGACTGCAGCCAACCGCTCA
*
60671442 GCCTTCTGGAGAGATTTGCTCTGGTGTGTCAACTGCACCTACAAGTCCTTGTGGTTCTTCTCCAA
780 GCCTTCTGGAGAGATTTGCTCTGGTGTGTCAACTGCACCTACAAGTCCTTGTGGCTCTTCTCCAA
60671507 CATTTGGCCAAACATCTGTAAATCCTCATTCCATCACAAGTACCAATC
845 CATTTGGCCAAACATCTGTAAATCCTCATTCCATCACAAGTACCAATC
*
60671555 CATTTGGTGTGTCTAATTCCCCGGTATTTGGAACAGTAGGCACATTTGGAGCATCAAGCGCACCA
1 CATTTGGTGTATCTAATTCCCCGGTATTTGGAACAGTAGGCACATTTGGAGCATCAAGCGCACCA
60671620 GCTTTTGGCACTTCTCTCACTCATGCTTTTGGAGCATCAAATTCTGCTTTTGGCACTTCCAAGAC
66 GCTTTTGGCACTTCTCTCACTCATGCTTTTGGAGCATCAAATTCTGCTTTTGGCACTTCCAAGAC
60671685 TCCTGTTTTTGGAGTGTCAAATTCTGCTTTTGGCTTTTCCGACACTCCTACTTTTGGATCATCTT
131 TCCTGTTTTTGGAGTGTCAAATTCTGCTTTTGGCTTTTCCGACACTCCTACTTTTGGATCATCTT
60671750 CTACTCCTTCATTCAGCTCTGGGTCTAGCCCTGCTTTTGGCCAATCAACACCAGCATTTGCCAGT
196 CTACTCCTTCATTCAGCTCTGGGTCTAGCCCTGCTTTTGGCCAATCAACACCAGCATTTGCCAGT
60671815 AGTCCTTTTGGAACAACTACAATTGGAGCACAGAGTTCTTTTGGTGAGTAACCAAGCCTACTTGA
261 AGTCCTTTTGGAACAACTACAATTGGAGCACAGAGTTCTTTTGGTGAGTAACCAAGCCTACTTGA
60671880 TCATAGACTTCGAAACTACTTGTACAGTTAGGCAGAAATATATATTTTCATGGGCCTTACATGAT
326 TCATAGACTTCGAAACTACTTGTACAGTTAGGCAGAAATATATATTTTCATGGGCCTTACATGAT
*
60671945 TTAAGGTCAAGGGAATTCGTATACGTATACATATATATATTATTTAAAATTCTTTGAGTTCTCAT
391 TTAAGGTCAAGGGAGTTCGTATACGTATACATATATATATTATTTAAAATTCTTTGAGTTCTCAT
*
60672010 GTAGGACCCCGATCTTCTGCACCAGCATTTGGACAGTCAACTTTTGGGGCTCAACGTGGGGGAAG
456 GTAGGACCCCAATCTTCTGCACCAGCATTTGGACAGTCAACTTTTGGGGCTCAACGTGGGGGAAG
60672075 AAGAGTTGCTTCTTACACGCCTACAATTGACGCTGATAGTAGCATTGGTACACAGATGTTCGAGT
521 AAGAGTTGCTTCTTACACGCCTACAATTGACGCTGATAGTAGCATTGGTACACAGATGTTCGAGT
*
60672140 CAATTTCAGCTATGCCTGTTTACAAAGATAAAAGTTATGAGGAGCTGAGATGGGAGGATTATCAA
586 CAATTTCAGCTATGCCTGTTTACAAAGATAAAAGTCATGAGGAGCTGAGATGGGAGGATTATCAA
*
60672205 TTAGGAGATAAAGGTACCTTTGTATAATATTAAGAAAACCTGGAAGTTATTCATTATTCTTTCCC
651 TTAGGAGATAAAGGTACCTTTGTAAAATATTAAGAAAACCTGGAAGTTATTCATTATTCTTTCCC
60672270 ATGTTCATTATCGACTAACTTGCTGTAATAATTTGACTGTCAGTTGGACTGCAGCCAACCGCTCA
716 A-GTTCATTATCGACTAACTTGCTGTAATAATTTGACTGTCAGTTGGACTGCAGCCAACCGCTCA
*
60672335 GCCTTCTGGAGAGATTTGCTCTGGTGTGTCAACTGCACCTACAAGTCCTTGTGGTTCTTCTCCAA
780 GCCTTCTGGAGAGATTTGCTCTGGTGTGTCAACTGCACCTACAAGTCCTTGTGGCTCTTCTCCAA
60672400 CATTTGGCCAAACATCTGTAAATCCTCATTCCATCACAAGTACCAATC
845 CATTTGGCCAAACATCTGTAAATCCTCATTCCATCACAAGTACCAATC
60672448 CATTT
1 CATTT
60672453 AGTCTAAAAT
Statistics
Matches: 2650, Mismatches: 30, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
891 1590 0.60
893 1060 0.40
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (892 bp):
CATTTGGTGTATCTAATTCCCCGGTATTTGGAACAGTAGGCACATTTGGAGCATCAAGCGCACCA
GCTTTTGGCACTTCTCTCACTCATGCTTTTGGAGCATCAAATTCTGCTTTTGGCACTTCCAAGAC
TCCTGTTTTTGGAGTGTCAAATTCTGCTTTTGGCTTTTCCGACACTCCTACTTTTGGATCATCTT
CTACTCCTTCATTCAGCTCTGGGTCTAGCCCTGCTTTTGGCCAATCAACACCAGCATTTGCCAGT
AGTCCTTTTGGAACAACTACAATTGGAGCACAGAGTTCTTTTGGTGAGTAACCAAGCCTACTTGA
TCATAGACTTCGAAACTACTTGTACAGTTAGGCAGAAATATATATTTTCATGGGCCTTACATGAT
TTAAGGTCAAGGGAGTTCGTATACGTATACATATATATATTATTTAAAATTCTTTGAGTTCTCAT
GTAGGACCCCAATCTTCTGCACCAGCATTTGGACAGTCAACTTTTGGGGCTCAACGTGGGGGAAG
AAGAGTTGCTTCTTACACGCCTACAATTGACGCTGATAGTAGCATTGGTACACAGATGTTCGAGT
CAATTTCAGCTATGCCTGTTTACAAAGATAAAAGTCATGAGGAGCTGAGATGGGAGGATTATCAA
TTAGGAGATAAAGGTACCTTTGTAAAATATTAAGAAAACCTGGAAGTTATTCATTATTCTTTCCC
AGTTCATTATCGACTAACTTGCTGTAATAATTTGACTGTCAGTTGGACTGCAGCCAACCGCTCAG
CCTTCTGGAGAGATTTGCTCTGGTGTGTCAACTGCACCTACAAGTCCTTGTGGCTCTTCTCCAAC
ATTTGGCCAAACATCTGTAAATCCTCATTCCATCACAAGTACCAATC
Found at i:60670824 original size:21 final size:21
Alignment explanation
Indices: 60670763--60670825 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
60670753 TGTTGGAGCA
60670763 TCAAATTCTGCTTTTGGCACT
1 TCAAATTCTGCTTTTGGCACT
* * *
60670784 TCCAAGACTCCTGTTTTTGG-AGT
1 T-CAA-A-TTCTGCTTTTGGCACT
60670807 GTCAAATTCTGCTTTTGGC
1 -TCAAATTCTGCTTTTGGC
60670826 GTTTCCGACA
Statistics
Matches: 32, Mismatches: 5, Indels: 9
0.70 0.11 0.20
Matches are distributed among these distances:
21 11 0.34
22 4 0.12
23 6 0.19
24 11 0.34
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.41
Consensus pattern (21 bp):
TCAAATTCTGCTTTTGGCACT
Found at i:60670839 original size:45 final size:45
Alignment explanation
Indices: 60670727--60670849 Score: 122
Period size: 45 Copynumber: 2.7 Consensus size: 45
60670717 AAGCGCACCA
* * * * **
60670727 GCTTTTGGCACTTCTC-TCACTCATGCTGTTGGAGCATCAAATTCT
1 GCTTTTGGCACTTC-CAACACTCCTACTTTTGGAGTGTCAAATTCT
* **
60670772 GCTTTTGGCACTTCCAAGACTCCTGTTTTTGGAGTGTCAAATTCT
1 GCTTTTGGCACTTCCAACACTCCTACTTTTGGAGTGTCAAATTCT
** *
60670817 GCTTTTGGCGTTTCCGACACTCCTACTTTTGGA
1 GCTTTTGGCACTTCCAACACTCCTACTTTTGGA
60670850 TCATCTTCTA
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 1 0.02
45 63 0.98
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (45 bp):
GCTTTTGGCACTTCCAACACTCCTACTTTTGGAGTGTCAAATTCT
Found at i:60671669 original size:21 final size:21
Alignment explanation
Indices: 60671643--60671717 Score: 62
Period size: 21 Copynumber: 3.4 Consensus size: 21
60671633 CTCTCACTCA
60671643 TGCTTTTGGAGCATCAAATTC
1 TGCTTTTGGAGCATCAAATTC
* *
60671664 TGCTTTTGGCA-CTTCCAAGACTCC
1 TGCTTTTGG-AGCAT-CAA-A-TTC
* **
60671688 TGTTTTTGGAGTGTCAAATTC
1 TGCTTTTGGAGCATCAAATTC
60671709 TGCTTTTGG
1 TGCTTTTGG
60671718 CTTTTCCGAC
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
21 21 0.50
22 5 0.12
23 5 0.12
24 11 0.26
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.41
Consensus pattern (21 bp):
TGCTTTTGGAGCATCAAATTC
Found at i:60671677 original size:45 final size:45
Alignment explanation
Indices: 60671620--60671747 Score: 132
Period size: 45 Copynumber: 2.8 Consensus size: 45
60671610 AAGCGCACCA
*
60671620 GCTTTTGGCACTTCTC-TCACTCATGCTTTTGGAGCATCAAATTCT
1 GCTTTTGGCACTTC-CAACACTCATGCTTTTGGAGCATCAAATTCT
* * * **
60671665 GCTTTTGGCACTTCCAAGACTCCTGTTTTTGGAGTGTCAAATTCT
1 GCTTTTGGCACTTCCAACACTCATGCTTTTGGAGCATCAAATTCT
** * * * *
60671710 GCTTTTGGCTTTTCCGACACTCCTACTTTTGGATCATC
1 GCTTTTGGCACTTCCAACACTCATGCTTTTGGAGCATC
60671748 TTCTACTCCT
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
44 1 0.01
45 66 0.99
ACGTcount: A:0.16, C:0.26, G:0.17, T:0.41
Consensus pattern (45 bp):
GCTTTTGGCACTTCCAACACTCATGCTTTTGGAGCATCAAATTCT
Found at i:60677750 original size:81 final size:81
Alignment explanation
Indices: 60677656--60677822 Score: 325
Period size: 81 Copynumber: 2.1 Consensus size: 81
60677646 AGAAAGTAAA
*
60677656 TCAACTTATTTTACTAATTATTACCACCAAAAAGATTACTACAAAGAGCAACAAAGAACGTAAAG
1 TCAACTTATTTTACTAATTATTACCACCAAAAAGACTACTACAAAGAGCAACAAAGAACGTAAAG
60677721 GAAAAGGTCTAAAATT
66 GAAAAGGTCTAAAATT
60677737 TCAACTTATTTTACTAATTATTACCACCAAAAAGACTACTACAAAGAGCAACAAAGAACGTAAAG
1 TCAACTTATTTTACTAATTATTACCACCAAAAAGACTACTACAAAGAGCAACAAAGAACGTAAAG
60677802 GAAAAGGTCTAAAATT
66 GAAAAGGTCTAAAATT
60677818 TCAAC
1 TCAAC
60677823 AAATATGCCT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (81 bp):
TCAACTTATTTTACTAATTATTACCACCAAAAAGACTACTACAAAGAGCAACAAAGAACGTAAAG
GAAAAGGTCTAAAATT
Found at i:60682121 original size:37 final size:38
Alignment explanation
Indices: 60682066--60682138 Score: 112
Period size: 39 Copynumber: 1.9 Consensus size: 38
60682056 CCGAATATAA
*
60682066 TAAATATATATTTTTTA-TTTTTATTTTTAAAATACTT
1 TAAAAATATATTTTTTATTTTTTATTTTTAAAATACTT
*
60682103 TAAAAATATTTTTTTTATTTTTTTATTTTTAAAATA
1 TAAAAATATATTTTTTA-TTTTTTATTTTTAAAATA
60682139 TTTTTTTTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 15 0.47
39 17 0.53
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (38 bp):
TAAAAATATATTTTTTATTTTTTATTTTTAAAATACTT
Found at i:60682549 original size:178 final size:177
Alignment explanation
Indices: 60682249--60682660 Score: 761
Period size: 178 Copynumber: 2.3 Consensus size: 177
60682239 GACAGGTCTA
*
60682249 GTATCATATTTTCCCAACGCACCAACCGTCACTCACTTTCCCCCAAATCCGTCCAACTTTTCTAT
1 GTATCATATTTTCCCAACACACCAACCGTCACTCACTTTCCCCCAAATCCGTCCAACTTTTCTAT
*
60682314 TATTTCCTTCTATATCCTTCCTCCATTGTTAAACCATCCAAGCTCAAAACTTTTATTTTCTTTGA
66 TATTTCCTTCTATATCCTTCCTCCATTGTTAAACCATCCAAGCTCAAAACGTTTATTTTCTTTGA
60682379 AATATTTTTAATGAAAATGTGTAGAAAAGTGGAGAAAAGATCAAAAG
131 AATATTTTTAATGAAAATGTGTAGAAAAGTGGAGAAAAGATCAAAAG
*
60682426 GTATCATATTTTCCCAACACACCAACCGTCACTCACTTTCCCCCCAAATCTGTCCAACTTTTCTA
1 GTATCATATTTTCCCAACACACCAACCGTCACTCACTTT-CCCCCAAATCCGTCCAACTTTTCTA
60682491 TTATTTCCTTCTATATCCTTCCTCCATTGTTAAACCATCCAAGCTCAAAACGTTTATTTTCTTTG
65 TTATTTCCTTCTATATCCTTCCTCCATTGTTAAACCATCCAAGCTCAAAACGTTTATTTTCTTTG
*
60682556 AAATATTTTTAATGGAAATGTGTAGAAAAGTGGAGAAAAGATCAAAAG
130 AAATATTTTTAATGAAAATGTGTAGAAAAGTGGAGAAAAGATCAAAAG
*
60682604 GTATCATATTTTCCCTAACACACCAACCGTCACTCACTTTTCCCCAAATCCGTCCAA
1 GTATCATATTTTCCC-AACACACCAACCGTCACTCACTTTCCCCCAAATCCGTCCAA
60682661 GCTCAAAACG
Statistics
Matches: 227, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
177 38 0.17
178 165 0.73
179 24 0.11
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.33
Consensus pattern (177 bp):
GTATCATATTTTCCCAACACACCAACCGTCACTCACTTTCCCCCAAATCCGTCCAACTTTTCTAT
TATTTCCTTCTATATCCTTCCTCCATTGTTAAACCATCCAAGCTCAAAACGTTTATTTTCTTTGA
AATATTTTTAATGAAAATGTGTAGAAAAGTGGAGAAAAGATCAAAAG
Found at i:60689620 original size:18 final size:21
Alignment explanation
Indices: 60689575--60689620 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
60689565 AATAGAAAAT
60689575 TAATTTATTATAAAATTTGAA
1 TAATTTATTATAAAATTTGAA
**
60689596 TTTTTTATTAT-AAA-TT-AA
1 TAATTTATTATAAAATTTGAA
60689614 TAATTTA
1 TAATTTA
60689621 AAAAATTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
18 7 0.33
19 2 0.10
20 3 0.14
21 9 0.43
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
TAATTTATTATAAAATTTGAA
Found at i:60690575 original size:16 final size:16
Alignment explanation
Indices: 60690554--60690594 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
60690544 ATATTTTATA
*
60690554 TAATTTTAATAATAAT
1 TAATTTTAATAACAAT
60690570 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
60690586 TAATTTTAA
1 TAATTTTAA
60690595 ATTTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:60704956 original size:3 final size:3
Alignment explanation
Indices: 60704948--60704980 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
60704938 AATAAGATAT
60704948 GAA GAA GAA GAA GAA GAA GAA GAAA GAA -AA GAA
1 GAA GAA GAA GAA GAA GAA GAA G-AA GAA GAA GAA
60704981 AGATGGTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 23 0.82
4 3 0.11
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:60706805 original size:27 final size:27
Alignment explanation
Indices: 60706775--60706832 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
60706765 AAATTAGTTC
* *
60706775 TTTT-ATTTTATAATAATCTATAATATA
1 TTTTAATTTTATAAAAATAT-TAATATA
*
60706802 TTTTAATTTTATAAAAATATTTATATA
1 TTTTAATTTTATAAAAATATTAATATA
60706829 TTTT
1 TTTT
60706833 GTTATATTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 14 0.52
28 13 0.48
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (27 bp):
TTTTAATTTTATAAAAATATTAATATA
Found at i:60711228 original size:46 final size:46
Alignment explanation
Indices: 60711161--60711250 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
60711151 GTTCCATTAC
60711161 CTTCATATATTGTATATGCTAATCTTGTTTTTCAACCAAACAGTTA
1 CTTCATATATTGTATATGCTAATCTTGTTTTTCAACCAAACAGTTA
60711207 CTTCATATATTGTATATGCTAATCTTGTTTTTCAACCAAACAGT
1 CTTCATATATTGTATATGCTAATCTTGTTTTTCAACCAAACAGT
60711251 GTATCAACGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (46 bp):
CTTCATATATTGTATATGCTAATCTTGTTTTTCAACCAAACAGTTA
Found at i:60720266 original size:16 final size:16
Alignment explanation
Indices: 60720224--60720266 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
60720214 AAATTTAACC
*
60720224 ATTTTATTGAAATAAT
1 ATTTTATTTAAATAAT
*
60720240 ATTTTAATTAAGATAAT
1 ATTTTATTTAA-ATAAT
60720257 -TTTTATTTAA
1 ATTTTATTTAA
60720267 TAAATAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (16 bp):
ATTTTATTTAAATAAT
Found at i:60721250 original size:39 final size:39
Alignment explanation
Indices: 60721206--60721313 Score: 182
Period size: 38 Copynumber: 2.8 Consensus size: 39
60721196 GACCCATTTT
60721206 TATTTTAAAAATATTTTAAAATTAAAAAAATTAAAAAAG
1 TATTTTAAAAATATTTTAAAATTAAAAAAATTAAAAAAG
60721245 TATTTT-AAAATATTTTAAAATTAAAAAAATTAAAAAAG
1 TATTTTAAAAATATTTTAAAATTAAAAAAATTAAAAAAG
* * *
60721283 TATGTAAAAAATATTTTAAAATTTAAAAAAT
1 TATTTTAAAAATATTTTAAAATTAAAAAAAT
60721314 AAATATATTT
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
38 36 0.55
39 29 0.45
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (39 bp):
TATTTTAAAAATATTTTAAAATTAAAAAAATTAAAAAAG
Found at i:60722772 original size:29 final size:29
Alignment explanation
Indices: 60722714--60722768 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
60722704 GTCTTATTAG
*
60722714 ATTTTTTTAAATTTAAACAGGAAGGAATA
1 ATTTTTTTAAATTTAAACAGGAAGAAATA
*
60722743 ATTTTCTTT-AATTTAAA-AGGGAGAAA
1 ATTTT-TTTAAATTTAAACAGGAAGAAA
60722769 ATAAATGCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 7 0.30
29 13 0.57
30 3 0.13
ACGTcount: A:0.44, C:0.04, G:0.15, T:0.38
Consensus pattern (29 bp):
ATTTTTTTAAATTTAAACAGGAAGAAATA
Found at i:60729151 original size:25 final size:24
Alignment explanation
Indices: 60729117--60729166 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
60729107 TATTTTATAT
*
60729117 AATTAATTAATATATTTATATTTGA
1 AATTAATTAATATAATT-TATTTGA
* *
60729142 AATTATTTAATCTAATTTATTTGA
1 AATTAATTAATATAATTTATTTGA
60729166 A
1 A
60729167 TATATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (24 bp):
AATTAATTAATATAATTTATTTGA
Found at i:60735414 original size:108 final size:108
Alignment explanation
Indices: 60735262--60735503 Score: 324
Period size: 108 Copynumber: 2.2 Consensus size: 108
60735252 ATTTTCATTG
* * * * * *
60735262 CGGCTTATCTTTTGAGGACTCTGTGTATCTTCATTCCGGTTTATATCTCGAGCTTTTTGTGCATC
1 CGGCTTCTCTTTTGAGGACTTTGTGTACCTCCATTCCAGATTATATCTCGAGCTTTTTGTGCATC
** *
60735327 TTCATTA-GGATTTATATGTTGAGGACTACTCATGTTTGCATCG
66 TTCATTATGG-TTTATACATTGAGGACTACTCATGTTTGCATCA
* * * *
60735370 CGGTTTTTCTTTTGAGGACTTTGTGTACCTCCATTCCAGATTATATCTTGAGGTTTTTGTGCATC
1 CGGCTTCTCTTTTGAGGACTTTGTGTACCTCCATTCCAGATTATATCTCGAGCTTTTTGTGCATC
*
60735435 TTCATTATTGTTTATACATTGAGGACTACTCATGTTTGCATCA
66 TTCATTATGGTTTATACATTGAGGACTACTCATGTTTGCATCA
* *
60735478 TGGCTTCTCTTCTGAGGACTTTGTGT
1 CGGCTTCTCTTTTGAGGACTTTGTGT
60735504 GTCATCATTG
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
108 115 0.99
109 1 0.01
ACGTcount: A:0.17, C:0.18, G:0.20, T:0.45
Consensus pattern (108 bp):
CGGCTTCTCTTTTGAGGACTTTGTGTACCTCCATTCCAGATTATATCTCGAGCTTTTTGTGCATC
TTCATTATGGTTTATACATTGAGGACTACTCATGTTTGCATCA
Found at i:60735610 original size:36 final size:35
Alignment explanation
Indices: 60735562--60735647 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 35
60735552 GCTAATACCT
*
60735562 TGAGGACTTTGTGTTTTCCCCTCCGGGCTT-ATCTC
1 TGAGGACTTTGTGTTTTCCCCTCCGAG-TTAATCTC
*
60735597 TAGAGGACTTTGTGTTTTTCCCTCCGAGTTAATCTC
1 T-GAGGACTTTGTGTTTTCCCCTCCGAGTTAATCTC
*
60735633 TGAAGGACTTGGTGT
1 TG-AGGACTTTGTGT
60735648 GTTCTCACTC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
35 4 0.09
36 41 0.91
ACGTcount: A:0.14, C:0.22, G:0.24, T:0.40
Consensus pattern (35 bp):
TGAGGACTTTGTGTTTTCCCCTCCGAGTTAATCTC
Found at i:60735677 original size:36 final size:36
Alignment explanation
Indices: 60735647--60735742 Score: 174
Period size: 36 Copynumber: 2.7 Consensus size: 36
60735637 GGACTTGGTG
*
60735647 TGTTCTCACTCAGGTTTGTTCCTTGTGGACTTAGAT
1 TGTTTTCACTCAGGTTTGTTCCTTGTGGACTTAGAT
60735683 TGTTTTCACTCAGGTTTGTTCCTTGTGGACTTAGAT
1 TGTTTTCACTCAGGTTTGTTCCTTGTGGACTTAGAT
*
60735719 TGTTTTCACTCAGGTTGGTTCCTT
1 TGTTTTCACTCAGGTTTGTTCCTT
60735743 CGGTACTTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 58 1.00
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (36 bp):
TGTTTTCACTCAGGTTTGTTCCTTGTGGACTTAGAT
Found at i:60738290 original size:6 final size:6
Alignment explanation
Indices: 60738281--60738306 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
60738271 GAGACAGGGA
60738281 CAGGCT CAGGCT CAGGCT CAGGCT CA
1 CAGGCT CAGGCT CAGGCT CAGGCT CA
60738307 AACTCATCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.35, G:0.31, T:0.15
Consensus pattern (6 bp):
CAGGCT
Found at i:60743982 original size:47 final size:47
Alignment explanation
Indices: 60743914--60744008 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
60743904 ACCCAACAAA
*
60743914 AGCCAGCCATATGGGTATGAATCCAGATAACTTGTTGTTAGCAGAAC
1 AGCCAGCCATATGGGTATGAATCCAGATAACTTGTTGTTAGCAAAAC
60743961 AGCCAGCCATATGGGTATGAATCCAGATAACTTGTTGTTAGCAAAAC
1 AGCCAGCCATATGGGTATGAATCCAGATAACTTGTTGTTAGCAAAAC
60744008 A
1 A
60744009 AGAATGTCAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (47 bp):
AGCCAGCCATATGGGTATGAATCCAGATAACTTGTTGTTAGCAAAAC
Found at i:60752485 original size:18 final size:18
Alignment explanation
Indices: 60752464--60752501 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
60752454 ATTTTTAAAA
*
60752464 TTTTAAAGAGTTTTT-AT
1 TTTTTAAGAGTTTTTAAT
*
60752481 TTTTTAATAGTTTTTAAT
1 TTTTTAAGAGTTTTTAAT
60752499 TTT
1 TTT
60752502 AAAAAGTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (18 bp):
TTTTTAAGAGTTTTTAAT
Found at i:60752542 original size:27 final size:28
Alignment explanation
Indices: 60752498--60752557 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
60752488 TAGTTTTTAA
*
60752498 TTTT-AAAAAGTATGAATTTATT-TATTT
1 TTTTAAAAAAATATGAATTT-TTATATTT
60752525 TTTTAAAAAAATAT-AATTTTTATATTT
1 TTTTAAAAAAATATGAATTTTTATATTT
60752552 TATTTA
1 T-TTTA
60752558 GAATATAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 2 0.07
27 15 0.52
28 12 0.41
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (28 bp):
TTTTAAAAAAATATGAATTTTTATATTT
Found at i:60752557 original size:28 final size:29
Alignment explanation
Indices: 60752492--60752557 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
60752482 TTTTAATAGT
* *
60752492 TTTTAATTTTAAAAAGTATGAATTTATTTA
1 TTTT-ATTTAAAAAAATATGAATTTATTTA
60752522 TTTT-TTTAAAAAAATAT-AATTT-TTATA
1 TTTTATTTAAAAAAATATGAATTTATT-TA
60752549 TTTTATTTA
1 TTTTATTTA
60752558 GAATATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 2 0.06
27 11 0.34
28 15 0.47
30 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (29 bp):
TTTTATTTAAAAAAATATGAATTTATTTA
Found at i:60768579 original size:21 final size:20
Alignment explanation
Indices: 60768540--60768580 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
60768530 GAATTATATA
*
60768540 AAAAAAATTTTTAACTTTTT
1 AAAAAAATTTTTAAATTTTT
*
60768560 AAAATAATTTTTACAATTTTT
1 AAAAAAATTTTTA-AATTTTT
60768581 TTACATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAAAAATTTTTAAATTTTT
Found at i:60768711 original size:21 final size:19
Alignment explanation
Indices: 60768674--60768718 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
60768664 TTATAATTTA
*
60768674 TATATATTTCTAGATTTTG
1 TATATATTACTAGATTTTG
*
60768693 TATATATTACTATGAATTTTT
1 TATATATTACTA-G-ATTTTG
60768714 TATAT
1 TATAT
60768719 TTTTATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 11 0.50
20 1 0.05
21 10 0.45
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (19 bp):
TATATATTACTAGATTTTG
Found at i:60775585 original size:9 final size:9
Alignment explanation
Indices: 60775571--60775601 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
60775561 GTTAAACGAA
60775571 TCGAGTTAT
1 TCGAGTTAT
*
60775580 TCGAGTTAA
1 TCGAGTTAT
60775589 TCGAGTTAT
1 TCGAGTTAT
60775598 TCGA
1 TCGA
60775602 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:60775668 original size:9 final size:9
Alignment explanation
Indices: 60775654--60775681 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
60775644 TGAGTTTTCG
60775654 AATTCGAAT
1 AATTCGAAT
60775663 AATTCGAAT
1 AATTCGAAT
60775672 AATTCGAAT
1 AATTCGAAT
60775681 A
1 A
60775682 TCAAGCTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:60779951 original size:19 final size:19
Alignment explanation
Indices: 60779910--60779957 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
60779900 ATCATTGTTA
60779910 AAAAATTAATATTTTTATT
1 AAAAATTAATATTTTTATT
*
60779929 -AAAATTATCTATTTTT-TT
1 AAAAATTA-ATATTTTTATT
60779947 AAAAATTAATA
1 AAAAATTAATA
60779958 ATTAAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
AAAAATTAATATTTTTATT
Found at i:60784528 original size:16 final size:16
Alignment explanation
Indices: 60784507--60784541 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
60784497 GCACTTTGAC
60784507 TAAAATTAATAGGCTG
1 TAAAATTAATAGGCTG
60784523 TAAAATTAATAGGCTG
1 TAAAATTAATAGGCTG
60784539 TAA
1 TAA
60784542 GACTTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (16 bp):
TAAAATTAATAGGCTG
Found at i:60789459 original size:119 final size:120
Alignment explanation
Indices: 60789249--60789471 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
60789239 TCCTCGTTCA
*
60789249 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
60789314 TTAGTAACTCGTACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
60789369 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
60789431 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCATCGGGACTTAACCCGGA
60789472 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 65 0.74
120 19 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:60789471 original size:40 final size:40
Alignment explanation
Indices: 60789247--60789471 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
60789237 GCTCCTCGTT
* *
60789247 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
60789287 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
60789327 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
60789367 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
60789406 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
60789447 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60789472 CATCATTCAA
Statistics
Matches: 160, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 115 0.72
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:60797358 original size:119 final size:120
Alignment explanation
Indices: 60797148--60797363 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
60797138 TCCTCGTTCA
*
60797148 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
60797213 TTAGTAACTCGCACAAATGCCATCGGGACTTAACCTGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCATCGGGACTTAACCTGGATTTAGTAACTCGCACC
* * **
60797268 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
60797330 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
64 ATATAGTAAC-TAGCACAAATGCCATCGGGACTTA
60797364 GCCCGGACAT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 59 0.71
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCATCGGGACTTAACCTGGATTTAGTAACTCGCACC
Found at i:60797370 original size:40 final size:40
Alignment explanation
Indices: 60797146--60797370 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
60797136 GCTCCTCGTT
* *
60797146 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
60797186 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
60797226 CAAATGCCATCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
60797266 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
60797305 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
60797346 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60797371 CATCATTCAA
Statistics
Matches: 160, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 116 0.73
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:60800355 original size:17 final size:18
Alignment explanation
Indices: 60800321--60800366 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
60800311 CCGTTATGTC
60800321 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
60800336 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
60800353 CGCGACCGCGACCG
1 CGCGACCGCGACCG
60800367 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:60802937 original size:9 final size:9
Alignment explanation
Indices: 60802920--60802956 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
60802910 TGAGTTTTCG
60802920 AATTCGAAT
1 AATTCGAAT
*
60802929 AACTCGAAT
1 AATTCGAAT
60802938 AATTCGAAT
1 AATTCGAAT
60802947 AATTCGAAT
1 AATTCGAAT
60802956 A
1 A
60802957 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:60803199 original size:19 final size:20
Alignment explanation
Indices: 60803159--60803199 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
60803149 CATAAACCCT
*
60803159 CAAAATCTTTTATTTTCCCC
1 CAAAATCTTTTATCTTCCCC
60803179 CAAAAT-TTTTA-CTTCCTCC
1 CAAAATCTTTTATCTTCC-CC
60803198 CA
1 CA
60803200 CTTTTCCCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
19 9 0.47
20 6 0.32
ACGTcount: A:0.27, C:0.32, G:0.00, T:0.41
Consensus pattern (20 bp):
CAAAATCTTTTATCTTCCCC
Found at i:60820789 original size:160 final size:160
Alignment explanation
Indices: 60820538--60820862 Score: 650
Period size: 160 Copynumber: 2.0 Consensus size: 160
60820528 AGAGCCATAA
60820538 ATCGACAAATTAAAAGCTGGAAGAAAGTGAAAAAGAAGAAGAAGATATTTACGAGAGCAAGGTCG
1 ATCGACAAATTAAAAGCTGGAAGAAAGTGAAAAAGAAGAAGAAGATATTTACGAGAGCAAGGTCG
60820603 ACGGAAGTCAAGTCCAAGTTAAAAGAGTCATGATTGTGCATTAAGATCGCAGCATTGGTTTCTTG
66 ACGGAAGTCAAGTCCAAGTTAAAAGAGTCATGATTGTGCATTAAGATCGCAGCATTGGTTTCTTG
60820668 TAAAAGCCTCAAACTCTCTTGGAATGTTTG
131 TAAAAGCCTCAAACTCTCTTGGAATGTTTG
60820698 ATCGACAAATTAAAAGCTGGAAGAAAGTGAAAAAGAAGAAGAAGATATTTACGAGAGCAAGGTCG
1 ATCGACAAATTAAAAGCTGGAAGAAAGTGAAAAAGAAGAAGAAGATATTTACGAGAGCAAGGTCG
60820763 ACGGAAGTCAAGTCCAAGTTAAAAGAGTCATGATTGTGCATTAAGATCGCAGCATTGGTTTCTTG
66 ACGGAAGTCAAGTCCAAGTTAAAAGAGTCATGATTGTGCATTAAGATCGCAGCATTGGTTTCTTG
60820828 TAAAAGCCTCAAACTCTCTTGGAATGTTTG
131 TAAAAGCCTCAAACTCTCTTGGAATGTTTG
60820858 ATCGA
1 ATCGA
60820863 GAGACCAAAG
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
160 165 1.00
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (160 bp):
ATCGACAAATTAAAAGCTGGAAGAAAGTGAAAAAGAAGAAGAAGATATTTACGAGAGCAAGGTCG
ACGGAAGTCAAGTCCAAGTTAAAAGAGTCATGATTGTGCATTAAGATCGCAGCATTGGTTTCTTG
TAAAAGCCTCAAACTCTCTTGGAATGTTTG
Found at i:60834828 original size:18 final size:17
Alignment explanation
Indices: 60834801--60834834 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
60834791 ATGTATTTTA
60834801 AAATTATAAAATATAAC
1 AAATTATAAAATATAAC
*
60834818 AAATATATAAATTATAA
1 AAAT-TATAAAATATAA
60834835 GATATAGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATTATAAAATATAAC
Found at i:60834956 original size:16 final size:16
Alignment explanation
Indices: 60834922--60834982 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
60834912 CTATGTATGT
** *
60834922 ATATATATATATTATA
1 ATATATATATAAAAAA
60834938 ATATATATATAAAAAA
1 ATATATATATAAAAAA
* *
60834954 ATATGTATGAAAATAAAA
1 ATATATAT-ATAA-AAAA
*
60834972 ATGTATATATA
1 ATATATATATA
60834983 GTTTTATAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
16 20 0.57
17 5 0.14
18 10 0.29
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (16 bp):
ATATATATATAAAAAA
Found at i:60836110 original size:40 final size:42
Alignment explanation
Indices: 60836036--60836118 Score: 125
Period size: 40 Copynumber: 2.0 Consensus size: 42
60836026 TGAGATTGAT
*
60836036 TCTTAAGAAATAAAAAAGGAATGAATAAGTAAATAAATGGAGA
1 TCTTAAGAAATAAAAAA-GAATAAATAAGTAAATAAATGGAGA
*
60836079 TCTTGAGAAAT-AAAAA-AATAAATAAGTAAATAAATGGAGA
1 TCTTAAGAAATAAAAAAGAATAAATAAGTAAATAAATGGAGA
60836119 GCAAGCAGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 23 0.61
42 5 0.13
43 10 0.26
ACGTcount: A:0.59, C:0.02, G:0.17, T:0.22
Consensus pattern (42 bp):
TCTTAAGAAATAAAAAAGAATAAATAAGTAAATAAATGGAGA
Found at i:60839015 original size:39 final size:39
Alignment explanation
Indices: 60838940--60839016 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
60838930 GTGGTCAGCT
* *
60838940 AGGACATTGCCTCAGGTGTAGTAAAAAAGGAGATCAACC
1 AGGACATTGCCTCAAGTGTAGTAAAAAAGGAAATCAACC
* *
60838979 AGGACATTGTCTCAAGTGTAGTCAAAGAA-GAAATCAAC
1 AGGACATTGCCTCAAGTGTAGT-AAAAAAGGAAATCAAC
60839017 ACTTTCTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 28 0.85
40 5 0.15
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.19
Consensus pattern (39 bp):
AGGACATTGCCTCAAGTGTAGTAAAAAAGGAAATCAACC
Found at i:60844742 original size:15 final size:15
Alignment explanation
Indices: 60844707--60844748 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
60844697 TTAAGAATTT
*
60844707 TATTAAATTAT-ATA
1 TATTTAATTATAATA
60844721 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
60844735 TATTTAATAATAAT
1 TATTTAATTATAAT
60844749 TATGTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:60844927 original size:39 final size:40
Alignment explanation
Indices: 60844884--60844986 Score: 109
Period size: 44 Copynumber: 2.5 Consensus size: 40
60844874 TTCCATTATG
60844884 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
60844923 CTATTACGCCTCTATTTCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTA-TTC----CATTCAACCAAACACAAGATTTA
60844968 CTATTACACCTCTATTCCA
1 CTATTACACCTCTATTCCA
60844987 ATACACCTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
39 13 0.25
40 5 0.10
44 19 0.37
45 15 0.29
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:60844993 original size:16 final size:16
Alignment explanation
Indices: 60844972--60845023 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
60844962 GATTTGCTAT
60844972 TACACCTCTATTCCAA
1 TACACCTCTATTCCAA
60844988 TACACCTCTATTCCAA
1 TACACCTCTATTCCAA
*
60845004 TACACCTCTAATCCAA
1 TACACCTCTATTCCAA
60845020 TACA
1 TACA
60845024 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTATTCCAA
Found at i:60848697 original size:20 final size:20
Alignment explanation
Indices: 60848681--60848719 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
60848671 AAGAAAATAA
60848681 CAAAAAAATAGTAAAAAAAG
1 CAAAAAAATAGTAAAAAAAG
*
60848701 CAAGAAAATAGTAAAAAAA
1 CAAAAAAATAGTAAAAAAA
60848720 AAATTTGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.74, C:0.05, G:0.10, T:0.10
Consensus pattern (20 bp):
CAAAAAAATAGTAAAAAAAG
Found at i:60848705 original size:31 final size:33
Alignment explanation
Indices: 60848652--60848719 Score: 95
Period size: 31 Copynumber: 2.1 Consensus size: 33
60848642 AAATGGTAGC
60848652 AAAATAGTGAAAAAACAACAAGAAAATAACAAA
1 AAAATAGTGAAAAAACAACAAGAAAATAACAAA
* **
60848685 AAAATAGT-AAAAAA-AGCAAGAAAATAGTAAA
1 AAAATAGTGAAAAAACAACAAGAAAATAACAAA
60848716 AAAA
1 AAAA
60848720 AAATTTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 18 0.56
32 6 0.19
33 8 0.25
ACGTcount: A:0.74, C:0.06, G:0.10, T:0.10
Consensus pattern (33 bp):
AAAATAGTGAAAAAACAACAAGAAAATAACAAA
Found at i:60850093 original size:3 final size:3
Alignment explanation
Indices: 60850085--60850135 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
60850075 ACAGACAAAC
60850085 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
60850133 AAT
1 AAT
60850136 GTTTGGGTTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:60861330 original size:22 final size:23
Alignment explanation
Indices: 60861305--60861364 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
60861295 TGGACTGAAT
60861305 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
60861327 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
60861349 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
60861365 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:60861332 original size:4 final size:4
Alignment explanation
Indices: 60861314--60861347 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
60861304 TATAAAAATT
60861314 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
60861348 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:60862753 original size:23 final size:22
Alignment explanation
Indices: 60862702--60862753 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
60862692 CCTCGTCTTT
*
60862702 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
60862724 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
60862747 TTCTTTT
1 TTCTTTT
60862754 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:60862768 original size:18 final size:18
Alignment explanation
Indices: 60862747--60862785 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
60862737 TTTCTTCAAC
* *
60862747 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
60862765 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
60862783 TTC
1 TTC
60862786 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:60865138 original size:22 final size:23
Alignment explanation
Indices: 60865113--60865172 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
60865103 TGGACTGAAT
60865113 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
60865135 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
60865157 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
60865173 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:60865140 original size:4 final size:4
Alignment explanation
Indices: 60865122--60865155 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
60865112 TATAAAAATT
60865122 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
60865156 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:60883488 original size:10 final size:9
Alignment explanation
Indices: 60883472--60883526 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
60883462 AATGGTAAAG
60883472 ATATTTTAT
1 ATATTTTAT
60883481 ATTATTTTAT
1 A-TATTTTAT
* *
60883491 AAATTTTAG
1 ATATTTTAT
*
60883500 ATGTTTTAT
1 ATATTTTAT
60883509 ATTATTTTAT
1 A-TATTTTAT
*
60883519 AAATTTTA
1 ATATTTTA
60883527 GATTCAATTC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
9 20 0.54
10 17 0.46
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (9 bp):
ATATTTTAT
Found at i:60883506 original size:28 final size:28
Alignment explanation
Indices: 60883470--60883529 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
60883460 TAAATGGTAA
60883470 AGATATTTTATATTATTTTATAAATTTT
1 AGATATTTTATATTATTTTATAAATTTT
*
60883498 AGATGTTTTATATTATTTTATAAATTTT
1 AGATATTTTATATTATTTTATAAATTTT
60883526 AGAT
1 AGAT
60883530 TCAATTCTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (28 bp):
AGATATTTTATATTATTTTATAAATTTT
Found at i:60884036 original size:59 final size:59
Alignment explanation
Indices: 60883941--60884056 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 59
60883931 AAACAGTCTC
*
60883941 ATTGTTAAGTTGACGACAAAACTAACCTTCATCTCCTCCTTCTATTGGAGCTCTAATAG
1 ATTGTTAAGTTGACGACAAAACTAACCTTCATCTCCTCCTTCTATTGCAGCTCTAATAG
60884000 ATTGTTAAGTT-A-GACAAAACT-ACCTTCATCTCCTCCTTCTATTGCAGCTCTAATAG
1 ATTGTTAAGTTGACGACAAAACTAACCTTCATCTCCTCCTTCTATTGCAGCTCTAATAG
60884056 A
1 A
60884057 AGGTCATTAC
Statistics
Matches: 56, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
56 35 0.62
57 9 0.16
58 1 0.02
59 11 0.20
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (59 bp):
ATTGTTAAGTTGACGACAAAACTAACCTTCATCTCCTCCTTCTATTGCAGCTCTAATAG
Found at i:60885896 original size:27 final size:27
Alignment explanation
Indices: 60885863--60886030 Score: 207
Period size: 27 Copynumber: 6.2 Consensus size: 27
60885853 GTGACGAAGT
60885863 CACCAGATACAGATAT-TGTGGCAGAGC
1 CACCAGA-ACAGATATATGTGGCAGAGC
* *
60885890 CATCAGAACAGATATATGTGGCAGAGT
1 CACCAGAACAGATATATGTGGCAGAGC
** *
60885917 CACCAGATTAGATA-ATCGTGGCATAGC
1 CACCAGAACAGATATAT-GTGGCAGAGC
*
60885944 CACCAGAACAGATATATGTGGCATAGC
1 CACCAGAACAGATATATGTGGCAGAGC
60885971 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* * *
60885998 CACCAGATCAGATA-ATTGTGACATAGC
1 CACCAGAACAGATATA-TGTGGCAGAGC
60886025 CACCAG
1 CACCAG
60886031 GACGCTTCCT
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
26 11 0.09
27 111 0.90
28 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGAGC
Found at i:60885980 original size:81 final size:81
Alignment explanation
Indices: 60885863--60886030 Score: 266
Period size: 81 Copynumber: 2.1 Consensus size: 81
60885853 GTGACGAAGT
* * *
60885863 CACCAGATACAGATATTGTGGCAGAGCCATCAGAACAGATATATGTGGCAGAGTCACCAGATTAG
1 CACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAG
*
60885928 ATAATCGTGGCATAGC
66 ATAATCGTGACATAGC
*
60885944 CACCAGA-ACAGATATATGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCA
1 CACCAGATACAGATAT-TGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCA
*
60886008 GATAATTGTGACATAGC
65 GATAATCGTGACATAGC
60886025 CACCAG
1 CACCAG
60886031 GACGCTTCCT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 8 0.10
81 72 0.90
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (81 bp):
CACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAG
ATAATCGTGACATAGC
Done.