Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 214 of 214
Found at i:63423017 original size:120 final size:120
Alignment explanation
Indices: 63422893--63423185 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
63422883 AATTATTTTA
* * *
63422893 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
63422956 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
63423013 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
63423078 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63423133 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
63423186 TAAATATGAT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.02
120 155 0.96
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:63423045 original size:18 final size:17
Alignment explanation
Indices: 63423014--63423048 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63423004 ATTATTAAGA
63423014 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
63423031 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
63423049 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:63423162 original size:18 final size:17
Alignment explanation
Indices: 63423134--63423168 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63423124 ATTATTAAGA
*
63423134 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
63423151 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
63423169 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:63423286 original size:147 final size:149
Alignment explanation
Indices: 63423122--63423396 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
63423112 ATAAGAATAT
*
63423122 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
63423187 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
63423250 TACCAAAACAAGTTTCTGC
131 TACCAAAACAAGTTTCTGC
63423269 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
63423334 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
63423397 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAGTTTCTGC
Found at i:63423309 original size:18 final size:17
Alignment explanation
Indices: 63423281--63423315 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63423271 ATTATTAAGA
*
63423281 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
63423298 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
63423316 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:63423317 original size:28 final size:27
Alignment explanation
Indices: 63423285--63423357 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 27
63423275 TTAAGAATTT
63423285 TATTAAATTATATATTTTAATTAAAATA
1 TATTAAATTATATATTTT-ATTAAAATA
* * * *
63423313 TATTAAATAATA-ATTATGTTTAAATA
1 TATTAAATTATATATTTTATTAAAATA
*
63423339 TGATTAAATTATTTATTTT
1 T-ATTAAATTATATATTTT
63423358 TGATAATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 8 0.22
27 13 0.36
28 15 0.42
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (27 bp):
TATTAAATTATATATTTTATTAAAATA
Found at i:63423526 original size:44 final size:45
Alignment explanation
Indices: 63423477--63423571 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
63423467 TTACACCTCT
* *
63423477 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
63423521 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
63423566 ATTACA
1 ATTACA
63423572 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:63423571 original size:16 final size:16
Alignment explanation
Indices: 63423550--63423595 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
63423540 TTGATTTGCT
*
63423550 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
63423566 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
63423582 AATACACCTCTAAT
1 ATTACACCTCTAAT
63423596 TCAATACAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:63423600 original size:16 final size:16
Alignment explanation
Indices: 63423552--63423603 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
63423542 GATTTGCTAT
*
63423552 TACACCTCT-ATTCCAT
1 TACACCTCTAATT-CAA
*
63423568 TACACCTCTAATCCAA
1 TACACCTCTAATTCAA
63423584 TACACCTCTAATTCAA
1 TACACCTCTAATTCAA
63423600 TACA
1 TACA
63423604 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
16 30 0.94
17 2 0.06
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACCTCTAATTCAA
Found at i:63429050 original size:12 final size:12
Alignment explanation
Indices: 63429026--63429058 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
63429016 TCCTAGCTGT
63429026 AAATTCATTTCA
1 AAATTCATTTCA
63429038 AAATT-ATTGTCA
1 AAATTCATT-TCA
63429050 AAATTCATT
1 AAATTCATT
63429059 AAAATTCGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.16
12 13 0.68
13 3 0.16
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (12 bp):
AAATTCATTTCA
Found at i:63439105 original size:12 final size:12
Alignment explanation
Indices: 63439088--63439124 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
63439078 AATAATGTTT
63439088 TGTTTTGATTTA
1 TGTTTTGATTTA
*
63439100 TGTTTTGATTCA
1 TGTTTTGATTTA
*
63439112 TGTTTTGGTTTA
1 TGTTTTGATTTA
63439124 T
1 T
63439125 TTATGTTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.14, C:0.03, G:0.19, T:0.65
Consensus pattern (12 bp):
TGTTTTGATTTA
Found at i:63440997 original size:11 final size:11
Alignment explanation
Indices: 63440981--63441011 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
63440971 AACTGAATTG
63440981 TTTTTTTCCTT
1 TTTTTTTCCTT
*
63440992 TTTTTTTCTTT
1 TTTTTTTCCTT
63441003 TTTTTTTCC
1 TTTTTTTCC
63441012 AATAGGCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTTCCTT
Found at i:63449582 original size:22 final size:23
Alignment explanation
Indices: 63449557--63449599 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
63449547 TAATAAAAAT
63449557 TATA-TTTTA-AATTAATATTTTA
1 TATATTTTTATAATTAA-ATTTTA
63449579 TATATTTTTATAATTAAATTT
1 TATATTTTTATAATTAAATTT
63449600 AAAATTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 9 0.47
24 6 0.32
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TATATTTTTATAATTAAATTTTA
Found at i:63456541 original size:26 final size:26
Alignment explanation
Indices: 63456501--63456550 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
63456491 TGCGAGTTCA
*
63456501 ATACGCGAGCCCAATGTACAAGCTTG
1 ATACACGAGCCCAATGTACAAGCTTG
* *
63456527 ATACACGAGCTCAATGTGCAAGCT
1 ATACACGAGCCCAATGTACAAGCT
63456551 CAATGCATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (26 bp):
ATACACGAGCCCAATGTACAAGCTTG
Found at i:63466859 original size:3 final size:3
Alignment explanation
Indices: 63466846--63466900 Score: 92
Period size: 3 Copynumber: 18.0 Consensus size: 3
63466836 CCAACTGTAT
*
63466846 TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
63466894 TAGA TAA
1 TA-A TAA
63466901 AATTTTGAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 46 0.94
4 3 0.06
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:63471633 original size:3 final size:3
Alignment explanation
Indices: 63471625--63471657 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
63471615 CGAAAAGATA
63471625 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
63471658 TTATTTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:63475961 original size:18 final size:17
Alignment explanation
Indices: 63475927--63475975 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
63475917 TAACATTTTA
* *
63475927 AATATAAATTTTTATTTT
1 AATATAAA-TTTAAATTT
*
63475945 TATATAAATTTAAATTT
1 AATATAAATTTAAATTT
63475962 AATTATAAATTTAA
1 AA-TATAAATTTAA
63475976 TAAAAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATATAAATTTAAATTT
Found at i:63478426 original size:43 final size:38
Alignment explanation
Indices: 63478344--63478428 Score: 98
Period size: 38 Copynumber: 2.1 Consensus size: 38
63478334 AATTATAATT
* *
63478344 ATAAACTATTCTCATCAAATTTAGTAATTTTTTATTTA
1 ATAAACTATTCTCATCAAATTAAGTAATTATTTATTTA
*
63478382 ATAAATTATTCTCATCAAATTAACGTAAAATATATTTACTTTA
1 ATAAACTATTCTCATCAAATTAA-GT--AAT-TATTTA-TTTA
63478425 ATAA
1 ATAA
63478429 TAAAATAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
38 21 0.54
39 2 0.05
41 3 0.08
42 5 0.13
43 8 0.21
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.45
Consensus pattern (38 bp):
ATAAACTATTCTCATCAAATTAAGTAATTATTTATTTA
Found at i:63494983 original size:57 final size:57
Alignment explanation
Indices: 63494867--63495034 Score: 193
Period size: 57 Copynumber: 3.0 Consensus size: 57
63494857 GAGTCCCAAG
* *
63494867 GAAGTAGTCAAATCAGATATTCTATCACCAG--G-TCGTCGGTCCACTCGGCTTAA-A
1 GAAGTAGCCAAATCAGATATT-TATCACCAGTTGTTCGTCGGTCCCCTCGGCTTAAGA
* * *
63494921 GAAGTAGCCAAATCAGAAATCTTATCACCAGTTGTTCATCGGTCCCCCCGGCTTAAGA
1 GAAGTAGCCAAATCAGATAT-TTATCACCAGTTGTTCGTCGGTCCCCTCGGCTTAAGA
* * * *
63494979 -AAGTAGCAAAACCAGATCTTTTATCACCAGTTGTTCGTCAGTCCCCTCGGCTTAAG
1 GAAGTAGCCAAATCAGAT-ATTTATCACCAGTTGTTCGTCGGTCCCCTCGGCTTAAG
63495035 GTATTATATC
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
54 27 0.28
55 1 0.01
56 1 0.01
57 65 0.68
58 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (57 bp):
GAAGTAGCCAAATCAGATATTTATCACCAGTTGTTCGTCGGTCCCCTCGGCTTAAGA
Found at i:63497020 original size:17 final size:17
Alignment explanation
Indices: 63496998--63497058 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
63496988 AATCTTAGAG
63496998 TTCTAATTGTGTACAAC
1 TTCTAATTGTGTACAAC
*
63497015 TTCTAATTGTGTA-AGAG
1 TTCTAATTGTGTACA-AC
* *
63497032 TTCTAATTGTATACAGC
1 TTCTAATTGTGTACAAC
*
63497049 TTTTAATTGT
1 TTCTAATTGT
63497059 AGCCATTGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 1 0.03
17 35 0.95
18 1 0.03
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (17 bp):
TTCTAATTGTGTACAAC
Found at i:63497037 original size:34 final size:34
Alignment explanation
Indices: 63496994--63497058 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
63496984 ATGTAATCTT
*
63496994 AGAGTTCTAATTGTGTACAACTTCTAATTGTGTA
1 AGAGTTCTAATTGTATACAACTTCTAATTGTGTA
* *
63497028 AGAGTTCTAATTGTATACAGCTTTTAATTGT
1 AGAGTTCTAATTGTATACAACTTCTAATTGT
63497059 AGCCATTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (34 bp):
AGAGTTCTAATTGTATACAACTTCTAATTGTGTA
Found at i:63501943 original size:17 final size:17
Alignment explanation
Indices: 63501921--63501983 Score: 58
Period size: 17 Copynumber: 3.7 Consensus size: 17
63501911 AATATTAGAG
63501921 TTCTAATTGTAGACAGC
1 TTCTAATTGTAGACAGC
*
63501938 TTCTAATTGT-GTA-AGAG
1 TTCTAATTGTAG-ACAG-C
* *
63501955 TTCTAATTGTATACAAC
1 TTCTAATTGTAGACAGC
*
63501972 TTTTAATTGTAG
1 TTCTAATTGTAG
63501984 CCATTGATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
16 3 0.08
17 32 0.89
18 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (17 bp):
TTCTAATTGTAGACAGC
Found at i:63501960 original size:34 final size:34
Alignment explanation
Indices: 63501917--63501981 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
63501907 ATGTAATATT
*
63501917 AGAGTTCTAATTGTAGACAGCTTCTAATTGTGTA
1 AGAGTTCTAATTGTAGACAACTTCTAATTGTGTA
* *
63501951 AGAGTTCTAATTGTATACAACTTTTAATTGT
1 AGAGTTCTAATTGTAGACAACTTCTAATTGT
63501982 AGCCATTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.42
Consensus pattern (34 bp):
AGAGTTCTAATTGTAGACAACTTCTAATTGTGTA
Found at i:63512564 original size:25 final size:25
Alignment explanation
Indices: 63512535--63512585 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
63512525 CAAATAATTT
63512535 AAAAT-TCATAAAA-TATAAAAATATA
1 AAAATATCATAAAAGT-T-AAAATATA
*
63512560 AAAATATTATAAAAGTTAAAATATA
1 AAAATATCATAAAAGTTAAAATATA
63512585 A
1 A
63512586 CATTATGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 14 0.61
26 8 0.35
27 1 0.04
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (25 bp):
AAAATATCATAAAAGTTAAAATATA
Found at i:63513285 original size:17 final size:17
Alignment explanation
Indices: 63513263--63513296 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63513253 TACAAAAGAA
63513263 TGGTGCCCATTTATAAT
1 TGGTGCCCATTTATAAT
63513280 TGGTGCCCATTTATAAT
1 TGGTGCCCATTTATAAT
63513297 GTATGAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (17 bp):
TGGTGCCCATTTATAAT
Found at i:63519351 original size:8 final size:8
Alignment explanation
Indices: 63519340--63519366 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
63519330 CCTTTATTAA
63519340 TTTAAAAT
1 TTTAAAAT
63519348 TTTAAAAT
1 TTTAAAAT
63519356 TTTAAAAT
1 TTTAAAAT
63519364 TTT
1 TTT
63519367 CTAGAGAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTAAAAT
Found at i:63522505 original size:9 final size:9
Alignment explanation
Indices: 63522494--63522554 Score: 77
Period size: 9 Copynumber: 6.8 Consensus size: 9
63522484 TTTGGTTAAA
*
63522494 AATTAACCA
1 AATTAACCG
63522503 AATTAACCG
1 AATTAACCG
*
63522512 AATTAACTG
1 AATTAACCG
*
63522521 AATTACCCG
1 AATTAACCG
*
63522530 AATTACCCG
1 AATTAACCG
*
63522539 AATTACCCG
1 AATTAACCG
63522548 AATTAAC
1 AATTAAC
63522555 AAAATTGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 47 1.00
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:63524178 original size:27 final size:28
Alignment explanation
Indices: 63524144--63524206 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 28
63524134 AAAAATAACC
63524144 AAAATATTATAA-CTTTTTTATTTACCA
1 AAAATATTATAATCTTTTTTATTTACCA
* *
63524171 AAAATATTATAATTTTTTTTATTTACTA
1 AAAATATTATAATCTTTTTTATTTACCA
63524199 AAATATAT
1 AAA-ATAT
63524207 CAAAAATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 12 0.38
28 16 0.50
29 4 0.12
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (28 bp):
AAAATATTATAATCTTTTTTATTTACCA
Found at i:63524566 original size:18 final size:18
Alignment explanation
Indices: 63524530--63524567 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
63524520 ATTTTATTAG
*
63524530 AGTTTATTAAATGAGAAT
1 AGTTTATTAAATGAAAAT
*
63524548 AGTTTATTAAATTAAAAT
1 AGTTTATTAAATGAAAAT
63524566 AG
1 AG
63524568 AGTTATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.39
Consensus pattern (18 bp):
AGTTTATTAAATGAAAAT
Found at i:63525186 original size:15 final size:16
Alignment explanation
Indices: 63525166--63525195 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
63525156 GGTGCCGCCA
63525166 CAGGTTTTT-TTTTTG
1 CAGGTTTTTGTTTTTG
63525181 CAGGTTTTTGTTTTT
1 CAGGTTTTTGTTTTT
63525196 TTTGATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.07, C:0.07, G:0.20, T:0.67
Consensus pattern (16 bp):
CAGGTTTTTGTTTTTG
Found at i:63525233 original size:28 final size:28
Alignment explanation
Indices: 63525192--63525247 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
63525182 AGGTTTTTGT
63525192 TTTTTTTGATATATTTTGGTAAATAAAA
1 TTTTTTTGATATATTTTGGTAAATAAAA
63525220 TTTTTTT-ATAATATTTTGGTAAATAAAA
1 TTTTTTTGAT-ATATTTTGGTAAATAAAA
63525248 AAATTATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.54
Consensus pattern (28 bp):
TTTTTTTGATATATTTTGGTAAATAAAA
Found at i:63525261 original size:26 final size:27
Alignment explanation
Indices: 63525202--63525265 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 27
63525192 TTTTTTTGAT
***
63525202 ATATTTTGGTAAATAAAATTTTTTTATA
1 ATATTTTGGTAAATAAAA-TAAATTATA
63525230 ATATTTTGGTAAATAAAA-AAATTATA
1 ATATTTTGGTAAATAAAATAAATTATA
63525256 ATATTTTGGT
1 ATATTTTGGT
63525266 TAGTTTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 15 0.45
28 18 0.55
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAATAAATTATA
Found at i:63526823 original size:12 final size:12
Alignment explanation
Indices: 63526806--63526831 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63526796 TCTTATATCC
63526806 TAAATAAAAAAT
1 TAAATAAAAAAT
63526818 TAAATAAAAAAT
1 TAAATAAAAAAT
63526830 TA
1 TA
63526832 GAGTAGTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
TAAATAAAAAAT
Found at i:63544143 original size:12 final size:13
Alignment explanation
Indices: 63544124--63544160 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
63544114 ATTTTTTAAA
63544124 TATTATTTAATTT
1 TATTATTTAATTT
63544137 T-TTATTTAATTT
1 TATTATTTAATTT
*
63544149 TATAATTTAATT
1 TATTATTTAATT
63544161 AATATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATTATTTAATTT
Found at i:63544149 original size:31 final size:29
Alignment explanation
Indices: 63544114--63544180 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 29
63544104 GGTTAATTCC
* *
63544114 ATTTTTTAAATATTATTTAAT-TTTTTATTTA
1 ATTTTTT-AAT-TTAATTAATATTTTT-TATA
*
63544145 ATTTTATAATTTAATTAATATTTTTTATA
1 ATTTTTTAATTTAATTAATATTTTTTATA
63544174 ATTTTTT
1 ATTTTTT
63544181 TATAATAGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 17 0.55
30 8 0.26
31 6 0.19
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (29 bp):
ATTTTTTAATTTAATTAATATTTTTTATA
Found at i:63544248 original size:29 final size:29
Alignment explanation
Indices: 63544205--63544275 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
63544195 ATAGCCCGGC
* *
63544205 AAATAATTTTTTCAGCACACATCACATCA
1 AAATTATTTTTTCAGAACACATCACATCA
* * ***
63544234 AATTTATTTTTTCAGAACCCATCTTGTCA
1 AAATTATTTTTTCAGAACACATCACATCA
63544263 AAATTATTTTTTC
1 AAATTATTTTTTC
63544276 CGGAACAATA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.34, C:0.20, G:0.04, T:0.42
Consensus pattern (29 bp):
AAATTATTTTTTCAGAACACATCACATCA
Found at i:63544546 original size:86 final size:86
Alignment explanation
Indices: 63544380--63544546 Score: 244
Period size: 86 Copynumber: 1.9 Consensus size: 86
63544370 AACCCAAAAA
63544380 CCCTAAATAGCAAATAACCCACTCGAGATTACACGACCAAAAACGCTTCCACGTCAGAGCGATTT
1 CCCTAAATAGCAAATAACCCACTCGAGATTACACGACCAAAAACGCTTCCACGTCAGAGCGATTT
**
63544445 TGCCTGACATGAGGAAGAATG
66 TGCCTGACACAAGGAAGAATG
* * * * ** *
63544466 CCCTAATTAGCAAATAACCCACTGGGGATTACACGGCCAAAAGTGCTTCCACGTCAGAGCGCTTT
1 CCCTAAATAGCAAATAACCCACTCGAGATTACACGACCAAAAACGCTTCCACGTCAGAGCGATTT
*
63544531 TGCCTGGCACAAGGAA
66 TGCCTGACACAAGGAA
63544547 AAAAGTGTTG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 71 1.00
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (86 bp):
CCCTAAATAGCAAATAACCCACTCGAGATTACACGACCAAAAACGCTTCCACGTCAGAGCGATTT
TGCCTGACACAAGGAAGAATG
Found at i:63551564 original size:6 final size:6
Alignment explanation
Indices: 63551553--63551583 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
63551543 CCACCATGAT
*
63551553 CATCAC CATCAC CATCAC CATCAC CACCAC C
1 CATCAC CATCAC CATCAC CATCAC CATCAC C
63551584 GTCATCTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.32, C:0.55, G:0.00, T:0.13
Consensus pattern (6 bp):
CATCAC
Found at i:63551565 original size:18 final size:18
Alignment explanation
Indices: 63551541--63551583 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
63551531 TCATCATGAT
* *
63551541 CACCACCATGATCATCAC
1 CACCACCATCACCATCAC
*
63551559 CATCACCATCACCATCAC
1 CACCACCATCACCATCAC
63551577 CACCACC
1 CACCACC
63551584 GTCATCTTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.51, G:0.02, T:0.14
Consensus pattern (18 bp):
CACCACCATCACCATCAC
Found at i:63552123 original size:21 final size:22
Alignment explanation
Indices: 63552099--63552140 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
63552089 ATTTTAGTCC
* *
63552099 TTCTA-TTTTTATTTTAAAATT
1 TTCTACTTTTCATTTAAAAATT
63552120 TTCTACTTTTCATTTAAAAAT
1 TTCTACTTTTCATTTAAAAAT
63552141 GCATGTCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (22 bp):
TTCTACTTTTCATTTAAAAATT
Found at i:63552774 original size:15 final size:15
Alignment explanation
Indices: 63552754--63552804 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
63552744 AATTTCTGTA
63552754 AATTTTTAAATATTT
1 AATTTTTAAATATTT
63552769 AA-TTTT-AATATTTT
1 AATTTTTAAATA-TTT
* *
63552783 TATTTTTAAAAATTT
1 AATTTTTAAATATTT
63552798 AATTTTT
1 AATTTTT
63552805 TCTACTTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 4 0.13
14 8 0.27
15 15 0.50
16 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
AATTTTTAAATATTT
Found at i:63552776 original size:14 final size:14
Alignment explanation
Indices: 63552757--63552803 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
63552747 TTCTGTAAAT
63552757 TTTTAAATATTTAA
1 TTTTAAATATTTAA
* *
63552771 TTTTAATATTTTTAT
1 TTTTAA-ATATTTAA
*
63552786 TTTTAAAAATTTAA
1 TTTTAAATATTTAA
63552800 TTTT
1 TTTT
63552804 TTCTACTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTAAATATTTAA
Found at i:63553282 original size:28 final size:23
Alignment explanation
Indices: 63553226--63553270 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
63553216 GGAAATTCAT
63553226 AAAAATATTATTTTATAAATTAA
1 AAAAATATTATTTTATAAATTAA
63553249 AAAAATATTATTTTATAAATTA
1 AAAAATATTATTTTATAAATTA
63553271 CAACAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
AAAAATATTATTTTATAAATTAA
Found at i:63555457 original size:21 final size:22
Alignment explanation
Indices: 63555431--63555477 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
63555421 CTCTGCTCAA
*
63555431 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
63555452 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
63555474 ACTC
1 ACTC
63555478 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:63614215 original size:17 final size:17
Alignment explanation
Indices: 63614177--63614225 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
63614167 GGGTGAGAAG
63614177 TAAAAGTTTAGGGGAAAA
1 TAAAAGTTTAGGGG-AAA
*
63614195 TAAAAAGTTTTGGGG-AA
1 T-AAAAGTTTAGGGGAAA
63614212 TAAAAGTTTGAGGG
1 TAAAAGTTT-AGGG
63614226 AAAGTAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.30
17 6 0.22
18 1 0.04
19 12 0.44
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.27
Consensus pattern (17 bp):
TAAAAGTTTAGGGGAAA
Found at i:63614349 original size:30 final size:30
Alignment explanation
Indices: 63614313--63614370 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
63614303 AGGTGAGATG
*
63614313 GGAAGGGAATAAAAGTTTTAGGGGAAAAGT
1 GGAAGGGAATAAAAATTTTAGGGGAAAAGT
* *
63614343 GGAAGGGAGTAAAAATTTTGGGGGAAAA
1 GGAAGGGAATAAAAATTTTAGGGGAAAA
63614371 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.38, T:0.19
Consensus pattern (30 bp):
GGAAGGGAATAAAAATTTTAGGGGAAAAGT
Found at i:63614599 original size:9 final size:9
Alignment explanation
Indices: 63614585--63614621 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
63614575 TATAGTTTGA
63614585 TATTCGAAT
1 TATTCGAAT
63614594 TATTCGAAT
1 TATTCGAAT
* *
63614603 TAGTCGAGT
1 TATTCGAAT
63614612 TATTCGAAT
1 TATTCGAAT
63614621 T
1 T
63614622 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (9 bp):
TATTCGAAT
Found at i:63616353 original size:44 final size:44
Alignment explanation
Indices: 63616302--63616396 Score: 129
Period size: 44 Copynumber: 2.2 Consensus size: 44
63616292 TACAAAGTAG
** * *
63616302 TATCTAAATATTAAATT-GGTAAAAATAAAGTTTAATAATTACAA
1 TATCTAAATATT-AATTAGACAAAAATAAACTTAAATAATTACAA
*
63616346 TATCTAAATATTAATTAGACAAAAATAAACTTAAATAATTATAA
1 TATCTAAATATTAATTAGACAAAAATAAACTTAAATAATTACAA
63616390 TATCTAA
1 TATCTAA
63616397 GACAAATTCA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
43 4 0.09
44 41 0.91
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (44 bp):
TATCTAAATATTAATTAGACAAAAATAAACTTAAATAATTACAA
Found at i:63619033 original size:30 final size:31
Alignment explanation
Indices: 63618994--63619053 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
63618984 GGAGGTGGGA
*
63618994 TGGGAAGGGAATAAAAGTTTTAAGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAAGGGAAAAG
* **
63619025 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAAGGGAAAA
63619054 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAAGGGAAAAG
Found at i:63619287 original size:9 final size:9
Alignment explanation
Indices: 63619273--63619309 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
63619263 TATAGTTTGA
63619273 TATTCGAAT
1 TATTCGAAT
63619282 TATTCGAAT
1 TATTCGAAT
*
63619291 TATTCGAGT
1 TATTCGAAT
63619300 TATTCGAAT
1 TATTCGAAT
63619309 T
1 T
63619310 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:63619585 original size:6 final size:6
Alignment explanation
Indices: 63619574--63619599 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
63619564 AGTTTGGTTT
63619574 ATTTTA ATTTTA ATTTTA ATTTTA AT
1 ATTTTA ATTTTA ATTTTA ATTTTA AT
63619600 ATGAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
ATTTTA
Found at i:63619754 original size:4 final size:4
Alignment explanation
Indices: 63619745--63619770 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
63619735 GTGAAAAAAA
63619745 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
63619771 GTCATAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:63621696 original size:3 final size:3
Alignment explanation
Indices: 63621690--63621715 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
63621680 TTATATAATA
63621690 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
63621716 GTTAAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:63622578 original size:40 final size:39
Alignment explanation
Indices: 63622534--63622618 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 39
63622524 GATACTAAAC
*
63622534 TGAATTATGGAA-TACTGAATATTGTTTTTGAGTACTGAAT
1 TGAATTAT-GAAGTACTGAATATTG-TTATGAGTACTGAAT
* * *
63622574 TGAATTGTGAAGGTACTGAATATTGTTATGTGTACTGCAT
1 TGAATTATGAA-GTACTGAATATTGTTATGAGTACTGAAT
63622614 TGAAT
1 TGAAT
63622619 GTGAAATTAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
39 3 0.08
40 24 0.62
41 12 0.31
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.41
Consensus pattern (39 bp):
TGAATTATGAAGTACTGAATATTGTTATGAGTACTGAAT
Found at i:63622592 original size:41 final size:39
Alignment explanation
Indices: 63622546--63622632 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 39
63622536 AATTATGGAA
* *
63622546 TACTGAATATTGTTTTTGAGTACTGAATTGAATTGTGAAGG
1 TACTGAATATTG-TTATGAGTACTGAATTGAA-TGTGAAAG
* * *
63622587 TACTGAATATTGTTATGTGTACTGCATTGAATGTGAAAT
1 TACTGAATATTGTTATGAGTACTGAATTGAATGTGAAAG
63622626 TACTGAA
1 TACTGAA
63622633 GTAATGAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
39 13 0.32
40 16 0.39
41 12 0.29
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (39 bp):
TACTGAATATTGTTATGAGTACTGAATTGAATGTGAAAG
Found at i:63622903 original size:45 final size:45
Alignment explanation
Indices: 63622836--63622934 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
63622826 GTCGACTACT
* * * *
63622836 GTTACTGTTACCGATTCGACACTTTGTGTGTCGGATACTGTTACC
1 GTTACTGTTACAGATTCAACACTTTGTATGTCGAATACTGTTACC
* * *
63622881 GTTACTGTTATAGATTCAACACTTTGTATGTTGAATACTGTTACT
1 GTTACTGTTACAGATTCAACACTTTGTATGTCGAATACTGTTACC
*
63622926 ATTACTGTT
1 GTTACTGTT
63622935 GCCGTTACTG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.42
Consensus pattern (45 bp):
GTTACTGTTACAGATTCAACACTTTGTATGTCGAATACTGTTACC
Found at i:63635559 original size:12 final size:12
Alignment explanation
Indices: 63635542--63635566 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63635532 CCTGTTTGTT
63635542 GTAGATATTGAA
1 GTAGATATTGAA
63635554 GTAGATATTGAA
1 GTAGATATTGAA
63635566 G
1 G
63635567 AGGTACCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (12 bp):
GTAGATATTGAA
Found at i:63636369 original size:16 final size:16
Alignment explanation
Indices: 63636345--63636441 Score: 126
Period size: 16 Copynumber: 6.1 Consensus size: 16
63636335 AAAGGTCGTC
*
63636345 ATTGAATTAGAAGTGT
1 ATTGGATTAGAAGTGT
63636361 ATTGGATTAG-AGATGT
1 ATTGGATTAGAAG-TGT
63636377 ATTGGATTAG-AGATGT
1 ATTGGATTAGAAG-TGT
*
63636393 ATTGGATTAGAGGTGT
1 ATTGGATTAGAAGTGT
*
63636409 ATTGGATTAGAGGTGT
1 ATTGGATTAGAAGTGT
*
63636425 ATTGGATTAGAGGTGT
1 ATTGGATTAGAAGTGT
63636441 A
1 A
63636442 ATAGCAAATC
Statistics
Matches: 77, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
15 2 0.03
16 74 0.96
17 1 0.01
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (16 bp):
ATTGGATTAGAAGTGT
Found at i:63636394 original size:32 final size:32
Alignment explanation
Indices: 63636345--63636441 Score: 151
Period size: 32 Copynumber: 3.0 Consensus size: 32
63636335 AAAGGTCGTC
* *
63636345 ATTGAATTAGA-AGTGTATTGGATTAGAGATGT
1 ATTGGATTAGAGA-TGTATTGGATTAGAGGTGT
63636377 ATTGGATTAGAGATGTATTGGATTAGAGGTGT
1 ATTGGATTAGAGATGTATTGGATTAGAGGTGT
*
63636409 ATTGGATTAGAGGTGTATTGGATTAGAGGTGT
1 ATTGGATTAGAGATGTATTGGATTAGAGGTGT
63636441 A
1 A
63636442 ATAGCAAATC
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 60 0.98
33 1 0.02
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (32 bp):
ATTGGATTAGAGATGTATTGGATTAGAGGTGT
Found at i:63636426 original size:48 final size:48
Alignment explanation
Indices: 63636345--63636441 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 48
63636335 AAAGGTCGTC
63636345 ATTGAATTAGAAGTGTATTGGATTAGAGATGTATTGGATTAGAGATGT
1 ATTGAATTAGAAGTGTATTGGATTAGAGATGTATTGGATTAGAGATGT
* * * *
63636393 ATTGGATTAGAGGTGTATTGGATTAGAGGTGTATTGGATTAGAGGTGT
1 ATTGAATTAGAAGTGTATTGGATTAGAGATGTATTGGATTAGAGATGT
63636441 A
1 A
63636442 ATAGCAAATC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (48 bp):
ATTGAATTAGAAGTGTATTGGATTAGAGATGTATTGGATTAGAGATGT
Found at i:63640613 original size:19 final size:20
Alignment explanation
Indices: 63640585--63640646 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
63640575 ATTTTAGATT
*
63640585 TTTTATAAA-TATTTTGAAA
1 TTTTAAAAACTATTTTGAAA
* * *
63640604 TTTTGAAAATTATTTCG-AA
1 TTTTAAAAACTATTTTGAAA
63640623 TTTCTAAAAACTATTTT-AAA
1 TTT-TAAAAACTATTTTGAAA
63640643 TTTT
1 TTTT
63640647 TTGGTTGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 13 0.38
20 21 0.62
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (20 bp):
TTTTAAAAACTATTTTGAAA
Found at i:63645501 original size:13 final size:13
Alignment explanation
Indices: 63645485--63645511 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63645475 TAAATTAATA
63645485 AATGTAATTATAT
1 AATGTAATTATAT
63645498 AATGTAATTATAT
1 AATGTAATTATAT
63645511 A
1 A
63645512 TTTTTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
AATGTAATTATAT
Found at i:63648440 original size:82 final size:82
Alignment explanation
Indices: 63648298--63648466 Score: 320
Period size: 82 Copynumber: 2.1 Consensus size: 82
63648288 TTGTGAGATG
63648298 TCTTTATTTAAGGTGTGATCGGATGCTGAAGTTTCATTTGCCCCAACTTGATAATATATCTTAGG
1 TCTTTATTTAAGGTGTGATCGGATGCTGAAGTTTCATTTGCCCCAACTTGATAATATATCTTAGG
*
63648363 ATTGTCAAATTCCAACT
66 ATTGCCAAATTCCAACT
*
63648380 TCTTTATTTAAGGTGTGATCGGATGCTGAAGTTTCATTTGCCCCAACTTGATAATGTATCTTAGG
1 TCTTTATTTAAGGTGTGATCGGATGCTGAAGTTTCATTTGCCCCAACTTGATAATATATCTTAGG
63648445 ATTGCCAAATTCCAACT
66 ATTGCCAAATTCCAACT
63648462 TCTTT
1 TCTTT
63648467 TGAGTAACTT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 85 1.00
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (82 bp):
TCTTTATTTAAGGTGTGATCGGATGCTGAAGTTTCATTTGCCCCAACTTGATAATATATCTTAGG
ATTGCCAAATTCCAACT
Found at i:63651472 original size:56 final size:57
Alignment explanation
Indices: 63651412--63651526 Score: 223
Period size: 56 Copynumber: 2.0 Consensus size: 57
63651402 AGGCAAAATA
63651412 TAATATAAGGGTTTTTATGTTATTTTTAGTGA-TTTTTTTTTGTTTTTAAATTTAGG
1 TAATATAAGGGTTTTTATGTTATTTTTAGTGATTTTTTTTTTGTTTTTAAATTTAGG
63651468 TAATATAAGGGTTTTTATGTTATTTTTAGTGATTTTTTTTTTGTTTTTAAATTTAGG
1 TAATATAAGGGTTTTTATGTTATTTTTAGTGATTTTTTTTTTGTTTTTAAATTTAGG
63651525 TA
1 TA
63651527 TGAAATGTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 32 0.55
57 26 0.45
ACGTcount: A:0.23, C:0.00, G:0.16, T:0.61
Consensus pattern (57 bp):
TAATATAAGGGTTTTTATGTTATTTTTAGTGATTTTTTTTTTGTTTTTAAATTTAGG
Found at i:63657656 original size:12 final size:12
Alignment explanation
Indices: 63657639--63657665 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
63657629 ACTAAAAAAA
63657639 TAAAATACTATC
1 TAAAATACTATC
63657651 TAAAATACTATC
1 TAAAATACTATC
63657663 TAA
1 TAA
63657666 CGATTAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAAATACTATC
Found at i:63659771 original size:2 final size:2
Alignment explanation
Indices: 63659764--63659789 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63659754 ATCATATGTC
63659764 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
63659790 TACATTAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:63665855 original size:24 final size:24
Alignment explanation
Indices: 63665828--63665875 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
63665818 TATGGACGAA
* *
63665828 GATGAAGATGATGAGGAAGAGGAG
1 GATGAAGAGGAGGAGGAAGAGGAG
*
63665852 GATGAAGAGGGGGAGGAAGAGGAG
1 GATGAAGAGGAGGAGGAAGAGGAG
63665876 AAAGAGAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.52, T:0.08
Consensus pattern (24 bp):
GATGAAGAGGAGGAGGAAGAGGAG
Found at i:63665858 original size:12 final size:12
Alignment explanation
Indices: 63665840--63665875 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
63665830 TGAAGATGAT
63665840 GAGGAAGAGGAG
1 GAGGAAGAGGAG
* *
63665852 GATGAAGAGGGG
1 GAGGAAGAGGAG
63665864 GAGGAAGAGGAG
1 GAGGAAGAGGAG
63665876 AAAGAGAGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.58, T:0.03
Consensus pattern (12 bp):
GAGGAAGAGGAG
Found at i:63668638 original size:283 final size:283
Alignment explanation
Indices: 63668131--63668696 Score: 1114
Period size: 283 Copynumber: 2.0 Consensus size: 283
63668121 TGTTTCTCTA
63668131 AATATTTCTTCATTGAAGATTGTTTCACTGAGGGTTGCTTTACTGAAAATTGCTTCATTGAAGCT
1 AATATTTCTTCATTGAAGATTGTTTCACTGAGGGTTGCTTTACTGAAAATTGCTTCATTGAAGCT
63668196 CTTGTTAAAGAAATCTCCTTGATTTAACACCTCTCTTTTCTGAAAAGCTCTGTCATAAAAGAACT
66 CTTGTTAAAGAAATCTCCTTGATTTAACACCTCTCTTTTCTGAAAAGCTCTGTCATAAAAGAACT
63668261 CTTTAGTAAAATCTTCATTAAGCTAAAAAAGTGAAAATAGCTCATTAGGGTATTTCTCTATTTGG
131 CTTTAGTAAAATCTTCATTAAGCTAAAAAAGTGAAAATAGCTCATTAGGGTATTTCTCTATTTGG
63668326 TTATCCCCAAGAGCTTGGCTTTGTGGATAAGATATGATGATAGTTAAGAGATCTCCTAACATTTC
196 TTATCCCCAAGAGCTTGGCTTTGTGGATAAGATATGATGATAGTTAAGAGATCTCCTAACATTTC
63668391 TATGAAGTGCTTCTCCTTTTCTT
261 TATGAAGTGCTTCTCCTTTTCTT
63668414 AATATTTCTTCATTGAAGATTGTTTCACTGAGGGTTGCTTTACTGAAAATTGCTTCATTGAAGCT
1 AATATTTCTTCATTGAAGATTGTTTCACTGAGGGTTGCTTTACTGAAAATTGCTTCATTGAAGCT
*
63668479 CTTGTTGAAGAAATCTCCTTGATTTAACACCTCTCTTTTCTGAAAAGCTCTGTCATAAAAGAACT
66 CTTGTTAAAGAAATCTCCTTGATTTAACACCTCTCTTTTCTGAAAAGCTCTGTCATAAAAGAACT
63668544 CTTTAGTAAAATCTTCATTAAGCTAAAAAAGTGAAAATAGCTCATTAGGGTATTTCTCTATTTGG
131 CTTTAGTAAAATCTTCATTAAGCTAAAAAAGTGAAAATAGCTCATTAGGGTATTTCTCTATTTGG
*
63668609 TTATCCCCAAGAGCTTGGCTTTGTGGATAAGATATGATGATAGTTAAGAGATCTCTTAACATTTC
196 TTATCCCCAAGAGCTTGGCTTTGTGGATAAGATATGATGATAGTTAAGAGATCTCCTAACATTTC
63668674 TATGAAGTGCTTCTCCTTTTCTT
261 TATGAAGTGCTTCTCCTTTTCTT
63668697 TTAGTTGATT
Statistics
Matches: 281, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
283 281 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.38
Consensus pattern (283 bp):
AATATTTCTTCATTGAAGATTGTTTCACTGAGGGTTGCTTTACTGAAAATTGCTTCATTGAAGCT
CTTGTTAAAGAAATCTCCTTGATTTAACACCTCTCTTTTCTGAAAAGCTCTGTCATAAAAGAACT
CTTTAGTAAAATCTTCATTAAGCTAAAAAAGTGAAAATAGCTCATTAGGGTATTTCTCTATTTGG
TTATCCCCAAGAGCTTGGCTTTGTGGATAAGATATGATGATAGTTAAGAGATCTCCTAACATTTC
TATGAAGTGCTTCTCCTTTTCTT
Found at i:63669256 original size:10 final size:9
Alignment explanation
Indices: 63669233--63669268 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
63669223 GTTTCCATAT
*
63669233 CTTTTTATC
1 CTTTTTTTC
63669242 CTTTTTTTC
1 CTTTTTTTC
63669251 CTTTTTTTC
1 CTTTTTTTC
*
63669260 CTTATTTTC
1 CTTTTTTTC
63669269 TTTAAAGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (9 bp):
CTTTTTTTC
Found at i:63671840 original size:11 final size:11
Alignment explanation
Indices: 63671824--63671850 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
63671814 ATATATATAG
63671824 TTAAATTAAAA
1 TTAAATTAAAA
63671835 TTAAATTAAAA
1 TTAAATTAAAA
63671846 TTAAA
1 TTAAA
63671851 GTTTAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TTAAATTAAAA
Found at i:63680863 original size:24 final size:24
Alignment explanation
Indices: 63680817--63680863 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
63680807 AAGAGAGGTA
* * *
63680817 AAATCAATAAGAAAACCATTTTGT
1 AAATAAATAAGAAAAACAGTTTGT
*
63680841 AAATAAATAAGAAAAAGAGTTTG
1 AAATAAATAAGAAAAACAGTTTG
63680864 AAGTATAATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (24 bp):
AAATAAATAAGAAAAACAGTTTGT
Found at i:63685642 original size:3 final size:3
Alignment explanation
Indices: 63685634--63685669 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
63685624 ACTAAATGTG
63685634 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
63685670 AACAAGAGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:63692193 original size:11 final size:11
Alignment explanation
Indices: 63692177--63692212 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
63692167 CAAAAACATA
63692177 TTGAATGTTAC
1 TTGAATGTTAC
63692188 TTGAA--TTA-
1 TTGAATGTTAC
63692196 TTGAATGTTAC
1 TTGAATGTTAC
63692207 TTGAAT
1 TTGAAT
63692213 TAAGGGTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 5 0.23
9 3 0.14
10 3 0.14
11 11 0.50
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.47
Consensus pattern (11 bp):
TTGAATGTTAC
Found at i:63692199 original size:19 final size:19
Alignment explanation
Indices: 63692175--63692214 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
63692165 ACCAAAAACA
63692175 TATTGAATGTTACTTGAAT
1 TATTGAATGTTACTTGAAT
63692194 TATTGAATGTTACTTGAAT
1 TATTGAATGTTACTTGAAT
63692213 TA
1 TA
63692215 AGGGTTATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (19 bp):
TATTGAATGTTACTTGAAT
Found at i:63697882 original size:16 final size:16
Alignment explanation
Indices: 63697861--63697898 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
63697851 TTTGGTTCAA
63697861 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGC
63697877 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGC
63697893 TGTAAT
1 TGTAAT
63697899 CAATAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.29, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:63702943 original size:24 final size:24
Alignment explanation
Indices: 63702881--63702931 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
63702871 TTCTAAAAGC
* * *
63702881 TTTAGTATTTATGAGTATAATATA
1 TTTAGCATTTATTAGCATAATATA
63702905 TTTAGCATTTATTAGCATAATATA
1 TTTAGCATTTATTAGCATAATATA
63702929 TTT
1 TTT
63702932 GACTTTGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (24 bp):
TTTAGCATTTATTAGCATAATATA
Found at i:63718666 original size:29 final size:30
Alignment explanation
Indices: 63718603--63718682 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 30
63718593 AATCTTAAAA
* *
63718603 TTATACAT-AATTTTGATTTAATATATAATT
1 TTATACATGAATTTTAATTT-ATATACAATT
* *
63718633 ATATACATGAATTTTAATTT-TGTACAATT
1 TTATACATGAATTTTAATTTATATACAATT
63718662 TTATACATGAAATTTTAATTT
1 TTATACATG-AATTTTAATTT
63718683 GATCAAATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 15 0.35
30 18 0.42
31 10 0.23
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (30 bp):
TTATACATGAATTTTAATTTATATACAATT
Found at i:63721965 original size:32 final size:32
Alignment explanation
Indices: 63721910--63721971 Score: 83
Period size: 31 Copynumber: 1.9 Consensus size: 32
63721900 TTTGCTCTTT
*
63721910 AAATTAACATATATGAATTAATTTATTAATATA
1 AAATAAACATATATGAATTAATTT-TTAATATA
63721943 AAATAAACA-ATAT-AATTCAATTTTTAATA
1 AAATAAACATATATGAATT-AATTTTTAATA
63721972 ACAAAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 10 0.37
32 9 0.33
33 8 0.30
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (32 bp):
AAATAAACATATATGAATTAATTTTTAATATA
Found at i:63722814 original size:13 final size:14
Alignment explanation
Indices: 63722796--63722824 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63722786 TTTAAATAAG
63722796 TATAATT-AAATTT
1 TATAATTAAAATTT
63722809 TATAATTAAAATTT
1 TATAATTAAAATTT
63722823 TA
1 TA
63722825 ATATAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATAATTAAAATTT
Found at i:63723423 original size:30 final size:31
Alignment explanation
Indices: 63723380--63723439 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
63723370 TATAAAATAG
63723380 TCACTGAAATATTCG-AAATTTTCATTTAAA
1 TCACTGAAATATTCGTAAATTTTCATTTAAA
*
63723410 TCACT-AAACTATTCGTAAATTTTTATTTAA
1 TCACTGAAA-TATTCGTAAATTTTCATTTAA
63723440 GACATTAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 3 0.11
30 11 0.41
31 13 0.48
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.43
Consensus pattern (31 bp):
TCACTGAAATATTCGTAAATTTTCATTTAAA
Found at i:63724275 original size:21 final size:21
Alignment explanation
Indices: 63724232--63724275 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
63724222 CTACCCAAGC
* * *
63724232 TTTTTTCTTTCTTTCTTTTCT
1 TTTTTTCTTTCTGTATTTGCT
*
63724253 TTTTTTTTTTCTGTATTTGCT
1 TTTTTTCTTTCTGTATTTGCT
63724274 TT
1 TT
63724276 ATTGTTTTGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.80
Consensus pattern (21 bp):
TTTTTTCTTTCTGTATTTGCT
Found at i:63730461 original size:3 final size:3
Alignment explanation
Indices: 63730455--63730489 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
63730445 ATAATGACAA
* *
63730455 AAT AAT AAT AAT AAT AAC AAC AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
63730490 AGGAATGCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:63735923 original size:2 final size:2
Alignment explanation
Indices: 63735916--63735987 Score: 65
Period size: 2 Copynumber: 36.5 Consensus size: 2
63735906 ATCGACTTTT
* * * *
63735916 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AA AA AA AA
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * *
63735957 AG AG AC AG AC AG AG AC AG AG AC AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
63735988 CGGCAAAAGG
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
1 1 0.02
2 58 0.98
ACGTcount: A:0.57, C:0.06, G:0.38, T:0.00
Consensus pattern (2 bp):
AG
Found at i:63753867 original size:16 final size:16
Alignment explanation
Indices: 63753837--63753867 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63753827 GTATATTTAA
*
63753837 TATATTTGATTAAAAG
1 TATATTTGATAAAAAG
63753853 TATATTTGATAAAAA
1 TATATTTGATAAAAA
63753868 TAAAATATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (16 bp):
TATATTTGATAAAAAG
Found at i:63757943 original size:15 final size:16
Alignment explanation
Indices: 63757912--63757946 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
63757902 GTGTTTCTTT
*
63757912 AACAACTTCTGAAGAA
1 AACAAATTCTGAAGAA
63757928 AACAAATTCT-AAGAA
1 AACAAATTCTGAAGAA
63757943 AACA
1 AACA
63757947 GAAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.17
Consensus pattern (16 bp):
AACAAATTCTGAAGAA
Found at i:63762628 original size:25 final size:26
Alignment explanation
Indices: 63762588--63762638 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
63762578 CATCTACAAA
* *
63762588 TAAAAATATTACAAATTATTTAAATT
1 TAAAAATATTAAAAATTATTGAAATT
63762614 TAAAAATA-TAAAAATTATTGAAATT
1 TAAAAATATTAAAAATTATTGAAATT
63762639 AAATTATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (26 bp):
TAAAAATATTAAAAATTATTGAAATT
Found at i:63763512 original size:152 final size:152
Alignment explanation
Indices: 63762990--63763927 Score: 1208
Period size: 151 Copynumber: 6.3 Consensus size: 152
63762980 CGTATTTTGA
* * *
63762990 CCCTCTGTTCATATTTTCTTT--CCGAATTTTATTACTTTTAAAAAATATAATA-TTTCTTAA-T
1 CCCTTTGTTCGTATTTT-TTTCCCCGGATTTTATTACTTTTAAAAAATATAATATTTTC-TAATT
* * * *
63763051 TT-TTATTTTACATTATTTTAGTACATTATATTTTAAATGTATTAATTTATTGTATTTTTTAAAT
64 TTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAAT
* **
63763115 AAATTAAAAAAA-TATTTATTTCCA
129 AAATTAAAAAAACCA-TTATTTCGG
* *
63763139 CCCTTTGTTCGTATTTTTTT---CGGATTTTATTACTTTCAATAAAAATATACTATTTTCTAATT
1 CCCTTTGTTCGTATTTTTTTCCCCGGATTTTATTACTTT-TA-AAAAATATAATATTTTCTAATT
* * *
63763201 TTATTATTTTACATTATTTTAGTAAATCAAGTTTGAAATGTATTAATTTA--GTGTTTTTTAAAT
64 TTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAAT
* *
63763264 AAATTTAAAAAAACCCTTATTCCGG
129 AAA-TTAAAAAAACCATTATTTCGG
* * * * * * *
63763289 TCCTTTGTTCATATTTTTTTCTCCAGAGTTTATTACTTTAAAAAAATATACTATTTTCTAATTTT
1 CCCTTTGTTCGTATTTTTTTCCCCGGATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTT
* *
63763354 ATTATTTTACTTTATTTTAGTATATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAATAA
66 ATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAATAA
63763419 ATTAAAAAAACCATTATTTCGG
131 ATTAAAAAAACCATTATTTCGG
*
63763441 CCCTTTGTTCGTATTTTTTTCCCCTGATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTT
1 CCCTTTGTTCGTATTTTTTTCCCCGGATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTT
63763506 ATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGT-TTTTTTAAATAA
66 ATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAATAA
* *
63763570 ATTTAAAAAAAACCCTTATTTTGG
131 A-TT-AAAAAAACCATTATTTCGG
* * *
63763594 CCCTTTGTTCGTATTTTTTTTTCCTGGATTTTATTA-TTTTCAATAAAAATATATTATTTTCGT-
1 CCCTTTGTTCGTA-TTTTTTTCCCCGGATTTTATTACTTTT--A-AAAAATATAATATTTTC-TA
* *
63763657 ATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAC--TGTATTTT-
61 ATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTA
63763719 --T--A--AAAAAAACCATTATTTCGG
126 AATAAATTAAAAAAACCATTATTTCGG
* *
63763740 CCCTCTGTTCGTATTTTTTTCCCCGAATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTT
1 CCCTTTGTTCGTATTTTTTTCCCCGGATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTT
* * *
63763805 ATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAA
66 ATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAATAA
*
63763870 ATTAAAAAAA-CATTTTTTCGG
131 ATTAAAAAAACCATTATTTCGG
*
63763891 CCCTTTGTTCGTA-TTTTTT-ACCGGATTTTATTACTTT
1 CCCTTTGTTCGTATTTTTTTCCCCGGATTTTATTACTTT
63763928 CAATAAAAAA
Statistics
Matches: 699, Mismatches: 59, Indels: 62
0.85 0.07 0.08
Matches are distributed among these distances:
142 1 0.00
143 66 0.09
144 1 0.00
145 26 0.04
146 33 0.05
147 15 0.02
148 5 0.01
149 60 0.09
150 48 0.07
151 145 0.21
152 139 0.20
153 64 0.09
154 20 0.03
155 6 0.01
156 69 0.10
157 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (152 bp):
CCCTTTGTTCGTATTTTTTTCCCCGGATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTT
ATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAATAA
ATTAAAAAAACCATTATTTCGG
Found at i:63763724 original size:143 final size:141
Alignment explanation
Indices: 63763423--63763862 Score: 544
Period size: 143 Copynumber: 3.0 Consensus size: 141
63763413 AAATAAATTA
*
63763423 AAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTTCCCCTG-ATTTTATTACTTTTAAAAAA
1 AAAAAACCATTATTTCGGCCCTCTGTTCGTATTTTTTTCCCC-GAATTTTATTACTTTTAAAAAA
*
63763487 TATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATT
65 TATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGTATTAATT
*
63763552 TACTGTTTTTTTAAATAAATTTAA
130 TACTG------T--AT---TTT-T
* * * * * *
63763576 AAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTTTTTCCTGGATTTTATTA-TTTTCAATAA
1 AAAAAACCATTATTTCGGCCCTCTGTTCGTA-TTTTTTTCCCCGAATTTTATTACTTTT--A-AA
* * *
63763640 AAATATATTATTTTCGT-ATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATT
62 AAATATAATATTTTC-TAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGTATT
63763704 AATTTACTGTATTTTT
126 AATTTACTGTATTTTT
63763720 AAAAAAAACCATTATTTCGGCCCTCTGTTCGTATTTTTTTCCCCGAATTTTATTACTTTTAAAAA
1 --AAAAAACCATTATTTCGGCCCTCTGTTCGTATTTTTTTCCCCGAATTTTATTACTTTTAAAAA
*
63763785 ATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGTATTCAT
64 ATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGTATTAAT
* *
63763850 TTAGTGTGTTTTT
129 TTACTGTATTTTT
63763863 TAAATAAATT
Statistics
Matches: 258, Mismatches: 19, Indels: 30
0.84 0.06 0.10
Matches are distributed among these distances:
142 1 0.00
143 74 0.29
144 1 0.00
145 22 0.09
146 32 0.12
148 2 0.01
150 1 0.00
153 34 0.13
154 18 0.07
155 1 0.00
156 71 0.28
157 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.53
Consensus pattern (141 bp):
AAAAAACCATTATTTCGGCCCTCTGTTCGTATTTTTTTCCCCGAATTTTATTACTTTTAAAAAAT
ATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGTATTAATTT
ACTGTATTTTT
Found at i:63763793 original size:299 final size:294
Alignment explanation
Indices: 63762982--63763936 Score: 1205
Period size: 299 Copynumber: 3.2 Consensus size: 294
63762972 CAATTATTCG
* * * * *
63762982 TATTTTGACCCTCTGTTCATATTTTCTTTCCGAATTTTATTACTTTTAAAAAATATAATA-TTTC
1 TATTTTGGCCCTTTGTTCATATTTTTTTTCCGGATTTTATTACTTTAAAAAAATATAATATTTTC
* * * * *
63763046 TTAATTT-TTATTTTACATTATTTTAGTACATTATATTTTAAATGTATTAATTTATTGTATTTTT
66 -TATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTA--TTT
** ** *
63763110 TAAATAAATTAAAAAAATATTTATTTCCACCCTTTGTTCGTATTTTTTT--CGGATTTTATTACT
128 T--ATAAA--AAAAAACCA-TTATTTCGGCCCTTTGTTCGTATTTTTTTCCCCGATTTTATTACT
* * * *
63763173 TTCAATAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATCAAGTTTGAA
188 TT-TA-AAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAA
63763238 ATGTATTAATTTAGTG-TTTTTTAAATAAATTTAAAAAAACCCT
251 ATGTATTAATTTAGTGTTTTTTTAAATAAATTTAAAAAAACCCT
** * * * *
63763281 TATTCCGGTCCTTTGTTCATATTTTTTTCTCCAGAGTTTATTACTTTAAAAAAATATACTATTTT
1 TATTTTGGCCCTTTGTTCATATTTTTTT-TCCGGATTTTATTACTTTAAAAAAATATAATATTTT
* *
63763346 CTAATTTTATTATTTTACT-TTATTTTAGTATATTATGTTTGAAATGTATTAATTTACTGTGTTT
65 CT-ATTTTATTATTTTA-TATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAC--TGTAT
63763410 TTTAAATAAATTAAAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTTCCCCTGATTTTATT
126 TTT--AT-AA--AAAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTTCCCC-GATTTTATT
*
63763475 ACTTTTAAAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGA
185 ACTTTTAAAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGA
*
63763540 AATGTATTAATTTACTGTTTTTTTAAATAAATTTAAAAAAAACCCT
250 AATGTATTAATTTAGTGTTTTTTTAAATAAATTT-AAAAAAACCCT
* * *
63763586 TATTTTGGCCCTTTGTTCGTATTTTTTTTTCCTGGATTTTATTATTTTCAATAAAAATATATTAT
1 TATTTTGGCCCTTTGTTCATA-TTTTTTTTCC-GGATTTTATTACTTT-AA-AAAAATATAATAT
63763651 TTTCGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTAT
62 TTTC-TATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTAT
*
63763716 TTT-T-AAAAAAAACCATTATTTCGGCCCTCTGTTCGTATTTTTTTCCCCGAATTTTATTACTTT
126 TTTATAAAAAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTTCCCCG-ATTTTATTACTTT
63763779 TAAAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGT
190 TAAAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGT
* *
63763844 ATTCATTTAGTGTGTTTTTTAAATAAA-TTAAAAAAA-CAT
255 ATTAATTTAGTGT-TTTTTTAAATAAATTTAAAAAAACCCT
* *
63763883 T-TTTTCGGCCCTTTGTTCGTA-TTTTTTACCGGATTTTATTACTTTCAATAAAAA
1 TATTTT-GGCCCTTTGTTCATATTTTTTTTCCGGATTTTATTACTTT-AA-AAAAA
63763937 AAACACACTA
Statistics
Matches: 586, Mismatches: 46, Indels: 53
0.86 0.07 0.08
Matches are distributed among these distances:
294 23 0.04
295 8 0.01
296 4 0.01
297 18 0.03
298 8 0.01
299 154 0.26
300 41 0.07
301 9 0.02
302 77 0.13
303 80 0.14
304 21 0.04
305 46 0.08
306 26 0.04
307 3 0.01
308 67 0.11
309 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (294 bp):
TATTTTGGCCCTTTGTTCATATTTTTTTTCCGGATTTTATTACTTTAAAAAAATATAATATTTTC
TATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGTATTTTAT
AAAAAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTTCCCCGATTTTATTACTTTTAAAAA
ATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTTGAAATGTATTAAT
TTAGTGTTTTTTTAAATAAATTTAAAAAAACCCT
Found at i:63763937 original size:451 final size:445
Alignment explanation
Indices: 63762990--63763927 Score: 1318
Period size: 451 Copynumber: 2.1 Consensus size: 445
63762980 CGTATTTTGA
* * * *
63762990 CCCTCTGTTCATATTTTCTTTCCGAATTTTATTACTTTTAAAAAATATAATATTTCTTAATTTTT
1 CCCTTTGTTCGTATTTT-TTACCGGATTTTATTACTTTTAAAAAATATAATATTTCTTAATTTTT
* *
63763055 ATTTTACATTATTTTAGTACATTATATTTTAAATGTATTAATTTATTGTATTTTTTAAATAAATT
65 ATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTATTTTTTAAATAAATT
*
63763120 AAAAAAATATTTATTTCCACCCTTTGTTCGTATTTTTTTCGGATTTTATTACTTTCAATAAAAAT
130 AAAAAAATACTTATTTCCACCCTTTGTTCGTATTTTTTTCGGATTTTATTACTTTCAATAAAAAT
63763185 ATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATCAAGTTTGAAATGTATTAATTT
195 ATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATCAAGTTTGAAATGTATTAATTT
* * * * * *
63763250 AGTGTTTTTTAAATAAATTTAAAAAAACCCTTATTCCGGTCCTTTGTTCATATTTTTTTCTCCAG
260 ACTGTATTTT--AT-AA--TAAAAAAACCATTATTCCGGCCCTCTGTTCATATTTTTTTCCCCAG
* * *
63763315 AGTTTATTACTTTAAAAAAATATACTATTTTCTAATTTTATTATTTTACTTTATTTTAGTATATT
320 AGTTTATTACTTTAAAAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATT
63763380 ATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAATAAATTAAAAAAACCATTATTTCGG
385 ATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAATAAATTAAAAAAACCATTATTTCGG
* *
63763441 CCCTTTGTTCGTATTTTTTTCCCCTGATTTTATTACTTTTAAAAAATATAATATTT-TCTAATTT
1 CCCTTTGTTCGTA-TTTTTT-ACCGGATTTTATTACTTTTAAAAAATATAATATTTCT-TAA-TT
*
63763505 TATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTTACTGT-TTTTTTAAATA
62 T-TTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTATTTTTTAAATA
*** *
63763569 AATTTAAAAAAA-ACCCTTATTTTGGCCCTTTGTTCGTATTTTTTTTTCCTGGATTTTATTATTT
126 AA-TTAAAAAAATA--CTTATTTCCACCCTTTGTTCGTA--TTTTTTT-C-GGATTTTATTACTT
* * * * *
63763633 TCAATAAAAATATATTATTTTCGT-ATTTTATTATTTTATATTATTTTAGTACATTATGTTTGAA
184 TCAATAAAAATATACTATTTTC-TAATTTTATTATTTTACATTATTTTAGTAAATCAAGTTTGAA
* *
63763697 ATGTATTAATTTACTGTATTTT-T-A-AAAAAAACCATTATTTCGGCCCTCTGTTCGTATTTTTT
248 ATGTATTAATTTACTGTATTTTATAATAAAAAAACCATTATTCCGGCCCTCTGTTCATATTTTTT
* *
63763759 TCCCC-GAATTTTATTACTTTTAAAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTT
313 TCCCCAG-AGTTTATTACTTTAAAAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTT
* * *
63763823 AGTAAATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTTAAATAAATTAAAAAAA-CATTTTT
377 AGTAAATTATGTTTGAAATGTATTAATTTACTGTGTTTTTTAAATAAATTAAAAAAACCATTATT
63763887 TCGG
442 TCGG
63763891 CCCTTTGTTCGTATTTTTTACCGGATTTTATTACTTT
1 CCCTTTGTTCGTATTTTTTACCGGATTTTATTACTTT
63763928 CAATAAAAAA
Statistics
Matches: 437, Mismatches: 36, Indels: 31
0.87 0.07 0.06
Matches are distributed among these distances:
448 16 0.04
449 6 0.01
450 24 0.05
451 158 0.36
452 39 0.09
453 17 0.04
454 58 0.13
455 19 0.04
456 1 0.00
457 7 0.02
458 1 0.00
459 90 0.21
460 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (445 bp):
CCCTTTGTTCGTATTTTTTACCGGATTTTATTACTTTTAAAAAATATAATATTTCTTAATTTTTA
TTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTGTATTTTTTAAATAAATTA
AAAAAATACTTATTTCCACCCTTTGTTCGTATTTTTTTCGGATTTTATTACTTTCAATAAAAATA
TACTATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATCAAGTTTGAAATGTATTAATTTA
CTGTATTTTATAATAAAAAAACCATTATTCCGGCCCTCTGTTCATATTTTTTTCCCCAGAGTTTA
TTACTTTAAAAAAATATAATATTTTCTAATTTTATTATTTTACATTATTTTAGTAAATTATGTTT
GAAATGTATTAATTTACTGTGTTTTTTAAATAAATTAAAAAAACCATTATTTCGG
Found at i:63779365 original size:7 final size:7
Alignment explanation
Indices: 63779355--63779381 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
63779345 TTATTATTCA
63779355 TTATTAG
1 TTATTAG
63779362 TTATTAG
1 TTATTAG
63779369 TTATTAG
1 TTATTAG
63779376 TTATTA
1 TTATTA
63779382 TTAAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (7 bp):
TTATTAG
Found at i:63779365 original size:14 final size:13
Alignment explanation
Indices: 63779348--63779384 Score: 56
Period size: 14 Copynumber: 2.7 Consensus size: 13
63779338 AAGATATTTA
63779348 TTATTCATTATTAG
1 TTATT-ATTATTAG
63779362 TTATTAGTTATTAG
1 TTATTA-TTATTAG
63779376 TTATTATTA
1 TTATTATTA
63779385 AATTAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (13 bp):
TTATTATTATTAG
Found at i:63787096 original size:7 final size:7
Alignment explanation
Indices: 63787086--63787126 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
63787076 TTATTATTCA
63787086 TTATTAG
1 TTATTAG
63787093 TTATTAG
1 TTATTAG
63787100 TTATTAG
1 TTATTAG
63787107 TTATTAG
1 TTATTAG
63787114 TTATTAG
1 TTATTAG
63787121 TTATTA
1 TTATTA
63787127 TTAAATTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (7 bp):
TTATTAG
Found at i:63787103 original size:21 final size:20
Alignment explanation
Indices: 63787079--63787129 Score: 84
Period size: 21 Copynumber: 2.5 Consensus size: 20
63787069 AAGATATTTA
63787079 TTATTCATTATTAGTTATTAG
1 TTATT-ATTATTAGTTATTAG
63787100 TTATTAGTTATTAGTTATTAG
1 TTATTA-TTATTAGTTATTAG
63787121 TTATTATTA
1 TTATTATTA
63787130 AATTAAAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.59
Consensus pattern (20 bp):
TTATTATTATTAGTTATTAG
Found at i:63789416 original size:3 final size:3
Alignment explanation
Indices: 63789408--63789435 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
63789398 TATAAAATTT
63789408 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
63789436 AGAAGAGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:63792484 original size:3 final size:3
Alignment explanation
Indices: 63792476--63792514 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
63792466 GCTTGCTATA
*
63792476 CTT CTT CTT CTT CTT CTT CTT TTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
63792515 GGTGGTGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:63798768 original size:19 final size:19
Alignment explanation
Indices: 63798744--63798800 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 19
63798734 TTTTAAGAAA
63798744 TTAATAATTTCTAAAACAT
1 TTAATAATTTCTAAAACAT
*
63798763 TTAATAATTACTAAAAACAT
1 TTAATAATTTCT-AAAACAT
** *
63798783 GAAAGAATTT-TAAAACAT
1 TTAATAATTTCTAAAACAT
63798801 GAAAAGATGC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 7 0.22
19 12 0.38
20 13 0.41
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.35
Consensus pattern (19 bp):
TTAATAATTTCTAAAACAT
Found at i:63807863 original size:13 final size:11
Alignment explanation
Indices: 63807835--63807877 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
63807825 AGTTAAAATT
63807835 TATTTTATTAA
1 TATTTTATTAA
63807846 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
63807859 TA-TTTATTAT
1 TATTTTATTAA
63807869 TATTTTATT
1 TATTTTATT
63807878 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:63807864 original size:23 final size:23
Alignment explanation
Indices: 63807838--63807881 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
63807828 TAAAATTTAT
63807838 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
63807861 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
63807882 AAATGGTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:63814605 original size:12 final size:12
Alignment explanation
Indices: 63814588--63814641 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
63814578 GATAAATACA
63814588 AATGTAAGAAAG
1 AATGTAAGAAAG
63814600 AATGTAAGAAAG
1 AATGTAAGAAAG
*
63814612 AAAT-TACAGAAACA
1 -AATGTA-AGAAA-G
*
63814626 AATGTAAGAAAT
1 AATGTAAGAAAG
63814638 AATG
1 AATG
63814642 GCTATGCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
12 18 0.50
13 16 0.44
14 2 0.06
ACGTcount: A:0.59, C:0.04, G:0.19, T:0.19
Consensus pattern (12 bp):
AATGTAAGAAAG
Found at i:63814635 original size:13 final size:13
Alignment explanation
Indices: 63814585--63814636 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
63814575 AAAGATAAAT
63814585 ACAAATGTAAGAA
1 ACAAATGTAAGAA
*
63814598 A-GAATGTAAGAA
1 ACAAATGTAAGAA
*
63814610 AGAAAT-TACAGAA
1 ACAAATGTA-AGAA
63814623 ACAAATGTAAGAA
1 ACAAATGTAAGAA
63814636 A
1 A
63814637 TAATGGCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
12 13 0.39
13 18 0.55
14 2 0.06
ACGTcount: A:0.62, C:0.06, G:0.17, T:0.15
Consensus pattern (13 bp):
ACAAATGTAAGAA
Found at i:63816015 original size:22 final size:22
Alignment explanation
Indices: 63815988--63816031 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
63815978 TTGGGAGTGA
63815988 GGGGGACGGGAAAAGAAATGTG
1 GGGGGACGGGAAAAGAAATGTG
63816010 GGGGGACGGGAAAAGAAATGTG
1 GGGGGACGGGAAAAGAAATGTG
63816032 TTTAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.05, G:0.50, T:0.09
Consensus pattern (22 bp):
GGGGGACGGGAAAAGAAATGTG
Found at i:63826582 original size:27 final size:27
Alignment explanation
Indices: 63826567--63826622 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
63826557 ATAATGTAAT
* *
63826567 TTTTAAAAATTGTTAATACAATTAAAA
1 TTTTAAAAATTATTAAAACAATTAAAA
*
63826594 TTTTAAAAATTATTAATACAATTAAAA
1 TTTTAAAAATTATTAAAACAATTAAAA
63826621 TT
1 TT
63826623 ATCTATTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (27 bp):
TTTTAAAAATTATTAAAACAATTAAAA
Found at i:63827002 original size:9 final size:9
Alignment explanation
Indices: 63826966--63827094 Score: 59
Period size: 9 Copynumber: 13.9 Consensus size: 9
63826956 AATATTTTTC
63826966 TTATAAAAGTA
1 TTATAAAA--A
*
63826977 TTAGAAAAA
1 TTATAAAAA
* *
63826986 TCAGAAAAA
1 TTATAAAAA
63826995 TTATAAAAA
1 TTATAAAAA
63827004 -TA-AAAATA
1 TTATAAAA-A
**
63827012 TTAATATTAA
1 TT-ATAAAAA
63827022 -TATTAAAAA
1 TTA-TAAAAA
* *
63827031 TGATATAAAC
1 TTATA-AAAA
*
63827041 TTAAAAAAA
1 TTATAAAAA
63827050 TTATAAAAA
1 TTATAAAAA
**
63827059 CTTATAAGTA
1 -TTATAAAAA
63827069 TTATAAAAA
1 TTATAAAAA
*
63827078 TCTA-ATAAA
1 T-TATAAAAA
63827087 TTATAAAA
1 TTATAAAA
63827095 TTAACAAACC
Statistics
Matches: 88, Mismatches: 20, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
7 4 0.05
8 6 0.07
9 51 0.58
10 18 0.20
11 9 0.10
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:63827050 original size:19 final size:19
Alignment explanation
Indices: 63827026--63827062 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63827016 TATTAATATT
*
63827026 AAAAATGATATAAACTTAA
1 AAAAATGATAAAAACTTAA
*
63827045 AAAAATTATAAAAACTTA
1 AAAAATGATAAAAACTTA
63827063 TAAGTATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (19 bp):
AAAAATGATAAAAACTTAA
Found at i:63827071 original size:19 final size:18
Alignment explanation
Indices: 63827047--63827094 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
63827037 AAACTTAAAA
*
63827047 AAATTATAAAAA-CTTAT
1 AAATTATAAAAATCTAAT
63827064 AAGTATTATAAAAATCTAAT
1 AA--ATTATAAAAATCTAAT
63827084 AAATTATAAAA
1 AAATTATAAAA
63827095 TTAACAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 2 0.07
18 9 0.33
19 10 0.37
20 6 0.22
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (18 bp):
AAATTATAAAAATCTAAT
Found at i:63832406 original size:21 final size:19
Alignment explanation
Indices: 63832371--63832409 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
63832361 GGATTATAAT
63832371 AAAAATATAAAAATATTTC
1 AAAAATATAAAAATATTTC
63832390 AAAATATATATAAAATATTT
1 AAAA-ATATA-AAAATATTT
63832410 TATGGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 5 0.28
21 9 0.50
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATATAAAAATATTTC
Found at i:63832473 original size:18 final size:18
Alignment explanation
Indices: 63832425--63832491 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
63832415 TTATTTATCA
*
63832425 ATATTTTGATATATAAAAT
1 ATATTTT-ATATATAAACT
** *
63832444 ATA-TACATATATAATAGT
1 ATATTTTATATATAA-ACT
63832462 A-ATTTTATATATAAACT
1 ATATTTTATATATAAACT
63832479 ATATTTTATATAT
1 ATATTTTATATAT
63832492 TAAAATTCTA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
17 12 0.31
18 24 0.62
19 3 0.08
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (18 bp):
ATATTTTATATATAAACT
Found at i:63833885 original size:58 final size:58
Alignment explanation
Indices: 63833808--63833975 Score: 237
Period size: 58 Copynumber: 3.0 Consensus size: 58
63833798 CATGTGAACA
63833808 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
63833867 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATA--
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* * *
63833923 TGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTG
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
63833974 TG
1 TG
63833976 ATTACGTGTA
Statistics
Matches: 104, Mismatches: 3, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
49 38 0.37
50 2 0.02
51 2 0.02
52 1 0.01
54 1 0.01
56 4 0.04
58 51 0.49
59 5 0.05
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (58 bp):
TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:63833917 original size:28 final size:28
Alignment explanation
Indices: 63833827--63833917 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
63833817 GTGATTCCGT
63833827 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
63833855 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
63833884 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
63833913 GTAAG
1 GTAAG
63833918 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:63833940 original size:49 final size:49
Alignment explanation
Indices: 63833868--63834010 Score: 232
Period size: 49 Copynumber: 2.9 Consensus size: 49
63833858 AGTGATATGT
* *
63833868 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
63833917 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
63833966 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
63834011 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 88 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:63837222 original size:52 final size:48
Alignment explanation
Indices: 63837203--63837405 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
63837193 TGACAAGTGG
* *
63837203 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
63837249 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
63837301 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
63837347 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
63837393 AAAGTGATAAGTG
1 AAAGTGATAAGTG
63837406 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:63837257 original size:98 final size:98
Alignment explanation
Indices: 63837137--63837405 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
63837127 TTTGAGTACT
*
63837137 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
63837202 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
63837235 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
63837300 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
63837333 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
63837398 GATAAGTG
65 GAAAAGTG
63837406 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:63837413 original size:37 final size:37
Alignment explanation
Indices: 63837369--63837514 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
63837359 GATAGCTTTA
*
63837369 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
63837406 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
63837443 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
63837480 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
63837515 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:63838387 original size:7 final size:7
Alignment explanation
Indices: 63838375--63838754 Score: 226
Period size: 7 Copynumber: 52.6 Consensus size: 7
63838365 CGCCCGACCT
63838375 GTTTAGG
1 GTTTAGG
63838382 GTTTAGG
1 GTTTAGG
63838389 GTTTCAGG
1 GTTT-AGG
63838397 GTTTAGG
1 GTTTAGG
63838404 GTTTAGG
1 GTTTAGG
63838411 GTTTTAGG
1 G-TTTAGG
63838419 GTTTAGG
1 GTTTAGG
** *
63838426 GTCGAAG
1 GTTTAGG
*
63838433 GTTAAGG
1 GTTTAGG
*
63838440 GTTTAGT
1 GTTTAGG
**
63838447 GTTGGGG
1 GTTTAGG
63838454 GTTTAGG
1 GTTTAGG
* *
63838461 GCTGA-G
1 GTTTAGG
63838467 GTTTGAGG
1 GTTT-AGG
*
63838475 GTTGAGG
1 GTTTAGG
* *
63838482 GTTGATG
1 GTTTAGG
63838489 GTTTAGG
1 GTTTAGG
63838496 GTTTAGG
1 GTTTAGG
*
63838503 GTTTATG
1 GTTTAGG
63838510 GTTTAAGG
1 GTTT-AGG
*
63838518 TTTTAGG
1 GTTTAGG
* *
63838525 GTCTATG
1 GTTTAGG
*
63838532 GTTCATGG
1 GTTTA-GG
*
63838540 GTTCAGG
1 GTTTAGG
* *
63838547 GTTCAAG
1 GTTTAGG
* *
63838554 GTCTGGG
1 GTTTAGG
* *
63838561 GTCTGGG
1 GTTTAGG
* *
63838568 GTCTGGG
1 GTTTAGG
63838575 GTTTTAGG
1 G-TTTAGG
*
63838583 GTTTGGGG
1 GTTT-AGG
63838591 GTTTAGG
1 GTTTAGG
63838598 GTTTTA-G
1 G-TTTAGG
63838605 GTTTAGG
1 GTTTAGG
63838612 GTTTAGG
1 GTTTAGG
63838619 GTTTATGG
1 GTTTA-GG
*
63838627 TTTTAGG
1 GTTTAGG
*
63838634 GTTTATG
1 GTTTAGG
63838641 GTTGTAGG
1 GTT-TAGG
*
63838649 CTTTAGG
1 GTTTAGG
*
63838656 GGTTAGG
1 GTTTAGG
63838663 GTTTTAGG
1 G-TTTAGG
63838671 GTTTTAGAG
1 G-TTTAG-G
* *
63838680 TTTTAGA
1 GTTTAGG
*
63838687 GTCTAGG
1 GTTTAGG
*
63838694 GTCTAGG
1 GTTTAGG
** *
63838701 GTCCATG
1 GTTTAGG
*
63838708 GTCTAGGG
1 GTTTA-GG
63838716 GTTTAGG
1 GTTTAGG
*
63838723 GTTTGGG
1 GTTTAGG
63838730 GTTT-GG
1 GTTTAGG
*
63838736 GATTTGGG
1 G-TTTAGG
*
63838744 GTTTGGG
1 GTTTAGG
63838751 GTTT
1 GTTT
63838755 GGAATTTAGG
Statistics
Matches: 298, Mismatches: 58, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
6 10 0.03
7 207 0.69
8 80 0.27
9 1 0.00
ACGTcount: A:0.13, C:0.04, G:0.42, T:0.41
Consensus pattern (7 bp):
GTTTAGG
Found at i:63838403 original size:22 final size:21
Alignment explanation
Indices: 63838375--63838754 Score: 226
Period size: 22 Copynumber: 17.5 Consensus size: 21
63838365 CGCCCGACCT
63838375 GTTTAGGGTTTAGGGTTTCAGG
1 GTTTAGGGTTTAGGGTTT-AGG
63838397 GTTTAGGGTTTAGGGTTTTAGG
1 GTTTAGGGTTTAGGG-TTTAGG
** * *
63838419 GTTTAGGGTCGAAGGTTAAGG
1 GTTTAGGGTTTAGGGTTTAGG
* **
63838440 GTTTAGTGTTGGGGGTTTAGG
1 GTTTAGGGTTTAGGGTTTAGG
* * *
63838461 GCTGA-GGTTTGAGGGTTGAGG
1 GTTTAGGGTTT-AGGGTTTAGG
* *
63838482 GTTGATGGTTTAGGGTTTAGG
1 GTTTAGGGTTTAGGGTTTAGG
* *
63838503 GTTTATGGTTTAAGGTTTTAGG
1 GTTTAGGGTTT-AGGGTTTAGG
* * * *
63838525 GTCTATGGTTCATGGGTTCAGG
1 GTTTAGGGTTTA-GGGTTTAGG
* * * * * *
63838547 GTTCAAGGTCTGGGGTCTGGG
1 GTTTAGGGTTTAGGGTTTAGG
* * *
63838568 GTCTGGGGTTTTAGGGTTTGGGG
1 GTTTAGGG-TTTAGGGTTT-AGG
63838591 GTTTAGGGTTTTA-GGTTTAGG
1 GTTTAGGG-TTTAGGGTTTAGG
*
63838612 GTTTAGGGTTTATGGTTTTAGG
1 GTTTAGGGTTTA-GGGTTTAGG
* *
63838634 GTTTATGGTTGTAGGCTTTAGG
1 GTTTAGGGTT-TAGGGTTTAGG
*
63838656 GGTTAGGGTTTTAGGGTTTTAGAG
1 GTTTAGGG-TTTAGGG-TTTAG-G
* * * *
63838680 TTTTAGAGTCTAGGGTCTAGG
1 GTTTAGGGTTTAGGGTTTAGG
** * *
63838701 GTCCATGGTCTAGGGGTTTAGG
1 GTTTAGGGTTTA-GGGTTTAGG
* *
63838723 GTTTGGGGTTT-GGGATTTGGG
1 GTTTAGGGTTTAGGG-TTTAGG
*
63838744 GTTTGGGGTTT
1 GTTTAGGGTTT
63838755 GGAATTTAGG
Statistics
Matches: 278, Mismatches: 65, Indels: 31
0.74 0.17 0.08
Matches are distributed among these distances:
20 10 0.04
21 100 0.36
22 130 0.47
23 32 0.12
24 6 0.02
ACGTcount: A:0.13, C:0.04, G:0.42, T:0.41
Consensus pattern (21 bp):
GTTTAGGGTTTAGGGTTTAGG
Found at i:63838586 original size:8 final size:8
Alignment explanation
Indices: 63838573--63838685 Score: 98
Period size: 8 Copynumber: 15.1 Consensus size: 8
63838563 CTGGGGTCTG
63838573 GGGTTTTA
1 GGGTTTTA
*
63838581 GGG-TTTG
1 GGGTTTTA
*
63838588 GGGGTTTA
1 GGGTTTTA
63838596 GGGTTTTA
1 GGGTTTTA
63838604 -GG-TTTA
1 GGGTTTTA
63838610 GGG-TTTA
1 GGGTTTTA
63838617 GGG-TTTA
1 GGGTTTTA
*
63838624 TGGTTTTA
1 GGGTTTTA
63838632 GGG-TTTA
1 GGGTTTTA
* *
63838639 TGGTTGTA
1 GGGTTTTA
*
63838647 -GGCTTTA
1 GGGTTTTA
*
63838654 GGG-GTTA
1 GGGTTTTA
63838661 GGGTTTTA
1 GGGTTTTA
63838669 GGGTTTTA
1 GGGTTTTA
*
63838677 GAGTTTTA
1 GGGTTTTA
63838685 G
1 G
63838686 AGTCTAGGGT
Statistics
Matches: 87, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
6 4 0.05
7 40 0.46
8 43 0.49
ACGTcount: A:0.13, C:0.01, G:0.40, T:0.46
Consensus pattern (8 bp):
GGGTTTTA
Found at i:63838747 original size:21 final size:21
Alignment explanation
Indices: 63838721--63838761 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
63838711 TAGGGGTTTA
*
63838721 GGGTTTGGGGTTTGGGATTTG
1 GGGTTTGGGGTTTGGAATTTG
63838742 GGGTTTGGGGTTTGGAATTT
1 GGGTTTGGGGTTTGGAATTT
63838762 AGGATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.00, G:0.49, T:0.44
Consensus pattern (21 bp):
GGGTTTGGGGTTTGGAATTTG
Found at i:63840698 original size:14 final size:14
Alignment explanation
Indices: 63840681--63840714 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
63840671 ATAGCAATTA
**
63840681 TAATATTATTTAAT
1 TAATATTATACAAT
63840695 TAATATTATACAAT
1 TAATATTATACAAT
63840709 TAATAT
1 TAATAT
63840715 AAAATGAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATTATACAAT
Done.