Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 25 of 214
Found at i:6994545 original size:10 final size:9
Alignment explanation
Indices: 6994528--6994624 Score: 50
Period size: 10 Copynumber: 9.6 Consensus size: 9
6994518 AAATTATTTT
6994528 AAAATTAAA
1 AAAATTAAA
6994537 AAGAATTAAA
1 AA-AATTAAA
6994547 AAAATTATTTTAA
1 AAAATTA----AA
*
6994560 AAATATTTAA
1 AAA-ATTAAA
*
6994570 AAATTTAAAA
1 AAAATT-AAA
6994580 AAAATTAAA
1 AAAATTAAA
6994589 AAAGTATGTAAA
1 AAA--AT-TAAA
***
6994601 AAAATATTTT
1 AAAAT-TAAA
6994611 AAAATTAAA
1 AAAATTAAA
6994620 AAAAT
1 AAAAT
6994625 AAATATATTT
Statistics
Matches: 67, Mismatches: 11, Indels: 20
0.68 0.11 0.20
Matches are distributed among these distances:
9 21 0.31
10 29 0.43
11 2 0.03
12 7 0.10
13 5 0.07
14 3 0.04
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (9 bp):
AAAATTAAA
Found at i:6994578 original size:18 final size:18
Alignment explanation
Indices: 6994555--6994590 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
6994545 AAAAAATTAT
* *
6994555 TTTAAAAATATTTAAAAA
1 TTTAAAAAAAATTAAAAA
6994573 TTTAAAAAAAATTAAAAA
1 TTTAAAAAAAATTAAAAA
6994591 AGTATGTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TTTAAAAAAAATTAAAAA
Found at i:6994580 original size:19 final size:19
Alignment explanation
Indices: 6994553--6994625 Score: 65
Period size: 19 Copynumber: 3.6 Consensus size: 19
6994543 TAAAAAAATT
*
6994553 ATTTTAAAAATATTTAAAA
1 ATTTAAAAAATATTTAAAA
* *
6994572 ATTTAAAAAAAATTAAAAA
1 ATTTAAAAAATATTTAAAA
*
6994591 AGTATGTAAAAAAATATTTTAAA
1 A-T-T-T-AAAAAATATTTAAAA
*
6994614 ATTAAAAAAATA
1 ATTTAAAAAATA
6994626 AATATATTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
19 25 0.58
20 1 0.02
21 2 0.05
22 2 0.05
23 13 0.30
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
ATTTAAAAAATATTTAAAA
Found at i:6994624 original size:40 final size:40
Alignment explanation
Indices: 6994441--6994624 Score: 246
Period size: 41 Copynumber: 4.5 Consensus size: 40
6994431 GGCCCATTTT
*
6994441 TATTTTAAAAATTTTAAAAAATT-AAAAAAGTATTTTAAAAA
1 TATTTT-AAAA-TTAAAAAAATTAAAAAAAGTATTTTAAAAA
*
6994482 TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAT
1 TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAA
*
6994522 TATTTTAAAATTAAAAAGAATTAAAAAAATTATTTTAAAAA
1 TATTTTAAAATTAAAAA-AATTAAAAAAAGTATTTTAAAAA
* **
6994563 TATTTAAAAATTTAAAAAAAATT-AAAAAAGTATGTAAAAAAA
1 TATTTTAAAA-TT-AAAAAAATTAAAAAAAGTAT-TTTAAAAA
6994605 TATTTTAAAATTAAAAAAAT
1 TATTTTAAAATTAAAAAAAT
6994625 AAATATATTT
Statistics
Matches: 129, Mismatches: 9, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
39 10 0.08
40 46 0.36
41 47 0.36
42 21 0.16
43 5 0.04
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (40 bp):
TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:6995734 original size:25 final size:25
Alignment explanation
Indices: 6995700--6995751 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
6995690 AAGAATCAGT
* *
6995700 AAACTTAAACAGACGGGACTGGTGA
1 AAACTTAAACAAACAGGACTGGTGA
6995725 AAACTTAAACAAACAGGACTGGTGA
1 AAACTTAAACAAACAGGACTGGTGA
6995750 AA
1 AA
6995752 TATAAATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (25 bp):
AAACTTAAACAAACAGGACTGGTGA
Found at i:7035144 original size:78 final size:78
Alignment explanation
Indices: 7035033--7035176 Score: 220
Period size: 78 Copynumber: 1.8 Consensus size: 78
7035023 CTCAACATGA
* * *
7035033 TTTTTTTACTAATTTTTCTCTTTTGAAATATAATATACATTATAAAAAAA-ATTAACACATAAAA
1 TTTTTTTACTAATTTTTCTCTTGTAAAACATAATATACATTATAAAAAAATATTAACACATAAAA
7035097 TTCAACATTGTTT
66 TTCAACATTGTTT
*
7035110 TTTTTATTACT-ATTTTTACTCTTGTAAAACATAATATACATTGTAAAAAAATATTAACACATAA
1 TTTTT-TTACTAATTTTT-CTCTTGTAAAACATAATATACATTATAAAAAAATATTAACACATAA
7035174 AAT
64 AAT
7035177 AAAGACAACT
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
77 11 0.18
78 34 0.57
79 15 0.25
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.44
Consensus pattern (78 bp):
TTTTTTTACTAATTTTTCTCTTGTAAAACATAATATACATTATAAAAAAATATTAACACATAAAA
TTCAACATTGTTT
Found at i:7035967 original size:2 final size:2
Alignment explanation
Indices: 7035962--7035987 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7035952 TATATATATA
7035962 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
7035988 CTCTTATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:7042832 original size:20 final size:20
Alignment explanation
Indices: 7042798--7042839 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7042788 AACTATTTAA
** *
7042798 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
7042818 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
7042838 AT
1 AT
7042840 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:7042839 original size:32 final size:32
Alignment explanation
Indices: 7042779--7042839 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
7042769 TTTTTTGAAA
7042779 AATAATTATAACTATTTAAATAATATTATTTG
1 AATAATTATAACTATTTAAATAATATTATTTG
*
7042811 AATAGTTATAA-TA-TTAAATGAATAATTAT
1 AATAATTATAACTATTTAAAT-AAT-ATTAT
7042840 GTGTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.23
31 5 0.19
32 15 0.58
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (32 bp):
AATAATTATAACTATTTAAATAATATTATTTG
Found at i:7054230 original size:18 final size:18
Alignment explanation
Indices: 7054184--7054241 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 18
7054174 TGCAAACCTG
*
7054184 TATGCATGTGCGAACCCA
1 TATGTATGTGCGAACCCA
**
7054202 TAAACTATGTGCGAACCCA
1 T-ATGTATGTGCGAACCCA
*
7054221 TATGTATGTGTGAACCC-
1 TATGTATGTGCGAACCCA
7054238 TATG
1 TATG
7054242 ATAAGCAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
17 4 0.12
18 14 0.42
19 15 0.45
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (18 bp):
TATGTATGTGCGAACCCA
Found at i:7054332 original size:18 final size:18
Alignment explanation
Indices: 7054277--7054333 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
7054267 ATGTGAGCTT
*
7054277 ATATAGATGTGCAAACCC
1 ATATACATGTGCAAACCC
* * * * *
7054295 CTGTAC-TATGCGAGCCC
1 ATATACATGTGCAAACCC
7054312 ATATACATGTGCAAACCC
1 ATATACATGTGCAAACCC
7054330 ATAT
1 ATAT
7054334 GTTATTGTGA
Statistics
Matches: 27, Mismatches: 11, Indels: 2
0.68 0.28 0.05
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (18 bp):
ATATACATGTGCAAACCC
Found at i:7056868 original size:84 final size:84
Alignment explanation
Indices: 7056727--7056892 Score: 305
Period size: 84 Copynumber: 2.0 Consensus size: 84
7056717 GTGATAAGAG
* * *
7056727 AATGATTAAGTCTTATAATTGTATGAGATGTTGAGGGTGTTGGAACATTATTAAAATAAGTTGAT
1 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTGGAACACTATTAAAATAAGTTGAT
7056792 AATATAAAAGAAGATAAAT
66 AATATAAAAGAAGATAAAT
7056811 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTGGAACACTATTAAAATAAGTTGAT
1 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTGGAACACTATTAAAATAAGTTGAT
7056876 AATATAAAAGAAGATAA
66 AATATAAAAGAAGATAA
7056893 GTAGATTTAA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 79 1.00
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.33
Consensus pattern (84 bp):
AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTGGAACACTATTAAAATAAGTTGAT
AATATAAAAGAAGATAAAT
Found at i:7065583 original size:18 final size:18
Alignment explanation
Indices: 7065547--7065584 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7065537 TTTTCAGTTA
*
7065547 TTTTTAATTTAATTATTT
1 TTTTTAATTTAAATATTT
7065565 TTTTTAATTTGAAAT-TTT
1 TTTTTAATTT-AAATATTT
7065583 TT
1 TT
7065585 GTGTAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTTTAATTTAAATATTT
Found at i:7068904 original size:81 final size:82
Alignment explanation
Indices: 7068797--7068950 Score: 258
Period size: 81 Copynumber: 1.9 Consensus size: 82
7068787 AATTAGTGAC
* *
7068797 TGTTTTGTCACTTTTTTATAACGTTAGT-AGCTGTTTTGTTATTTTTT-AAAATTTGAGTGACTA
1 TGTTTTGTCACTTTTTGATAACGTTAGTGA-CTGTTTTGTTATTTTTTAAAAAGTTGAGTGACTA
7068860 AAATGAAACTTATGTAAT
65 AAATGAAACTTATGTAAT
*
7068878 TGTTTTGTCACTTTTTGATAATGTTAGTGACTGTTTTGTTATTTTTTAAAAAGTTGAGTGACTAA
1 TGTTTTGTCACTTTTTGATAACGTTAGTGACTGTTTTGTTATTTTTTAAAAAGTTGAGTGACTAA
7068943 AATGAAAC
66 AATGAAAC
7068951 CTAGGTGACT
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
81 43 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.48
Consensus pattern (82 bp):
TGTTTTGTCACTTTTTGATAACGTTAGTGACTGTTTTGTTATTTTTTAAAAAGTTGAGTGACTAA
AATGAAACTTATGTAAT
Found at i:7071951 original size:767 final size:767
Alignment explanation
Indices: 7070477--7072779 Score: 4588
Period size: 767 Copynumber: 3.0 Consensus size: 767
7070467 GGAAGCTTAC
7070477 CATAGTCATTCAGATGTCAGCTTTGCTTTCCTCCCTCTCTCTTCCTACTATTTCACTGCATGAGC
1 CATAGTCATTCAGATGTCAGCTTTGCTTTCCTCCCTCTCTCTTCCTACTATTTCACTGCATGAGC
7070542 AAAAGGCAGAAATATCAAACACAATGAATCTCCTGATACTAGTAGAAATGCAGTTCACTGCTCTT
66 AAAAGGCAGAAATATCAAACACAATGAATCTCCTGATACTAGTAGAAATGCAGTTCACTGCTCTT
7070607 GCGCATATGGATCATTAACTTATATCTAAAGGGTGTAAATTCAGTTGTCACAAAAGGGAATAATT
131 GCGCATATGGATCATTAACTTATATCTAAAGGGTGTAAATTCAGTTGTCACAAAAGGGAATAATT
7070672 AATTTTTGAAACAATAATTTCAAAGGGAGTTCAAGACTTCAAGAGGGTGTCCTCAAATATATATA
196 AATTTTTGAAACAATAATTTCAAAGGGAGTTCAAGACTTCAAGAGGGTGTCCTCAAATATATATA
*
7070737 TGCATGCATGCATATATTACTGTCTCTTTGGTCCTCTTCTACAGGCAGTTACTTCCAGAAACTGC
261 TGCATGCATGCATATATTACTGTCTCTTTGGTCCTCTTCTACAGGCAGTTACTCCCAGAAACTGC
7070802 AGTTCTAATTTATACATAGCCAAGAATATATGCAACTAAGGTCAAACACTTATACCATAACTGCA
326 AGTTCTAATTTATACATAGCCAAGAATATATGCAACTAAGGTCAAACACTTATACCATAACTGCA
7070867 GAATCATTTGAAAAAGGATTTTCTATTGGGAAATGATTGGCATCAATTATTCGAACAGGATGATG
391 GAATCATTTGAAAAAGGATTTTCTATTGGGAAATGATTGGCATCAATTATTCGAACAGGATGATG
7070932 ATTCAGGGCATGGGATCAAATTTTCCAAGAGATTAGGACTGAAATGATTCAAGGACTGGTTCCTG
456 ATTCAGGGCATGGGATCAAATTTTCCAAGAGATTAGGACTGAAATGATTCAAGGACTGGTTCCTG
7070997 GTATTATCTATGCCATTGCTTCAACAGTTCAGGTAAGCACCAAGGAGCAAAGTAGCCGGAGTAAA
521 GTATTATCTATGCCATTGCTTCAACAGTTCAGGTAAGCACCAAGGAGCAAAGTAGCCGGAGTAAA
7071062 CTATAACATGGAAAAAAGTATTCCTCCTCCTCAACAAAAAAGAACCCATTCCTTCCAATATCAGG
586 CTATAACATGGAAAAAAGTATTCCTCCTCCTCAACAAAAAAGAACCCATTCCTTCCAATATCAGG
7071127 TACAGAGGCTTTATGATTCAAGAAGAGTTAAAACTGTCTATTTACAAATTAATTAATGAATGAGT
651 TACAGAGGCTTTATGATTCAAGAAGAGTTAAAACTGTCTATTTACAAATTAATTAATGAATGAGT
7071192 GAATGAAACATGTAGCACTTTTTTAGACTGGCTGTGAGTTAAAAAGCCCCAT
716 GAATGAAACATGTAGCACTTTTTTAGACTGGCTGTGAGTTAAAAAGCCCCAT
7071244 CATAGTCATTCAGATGTCAGCTTTGCTTTCCTCCCTCTCTCTTCCTACTATTTCACTGCATGAGC
1 CATAGTCATTCAGATGTCAGCTTTGCTTTCCTCCCTCTCTCTTCCTACTATTTCACTGCATGAGC
7071309 AAAAGGCAGAAATATCAAACACAATGAATCTCCTGATACTAGTAGAAATGCAGTTCACTGCTCTT
66 AAAAGGCAGAAATATCAAACACAATGAATCTCCTGATACTAGTAGAAATGCAGTTCACTGCTCTT
7071374 GCGCATATGGATCATTAACTTATATCTAAAGGGTGTAAATTCAGTTGTCACAAAAGGGAATAATT
131 GCGCATATGGATCATTAACTTATATCTAAAGGGTGTAAATTCAGTTGTCACAAAAGGGAATAATT
7071439 AATTTTTGAAACAATAATTTCAAAGGGAGTTCAAGACTTCAAGAGGGTGTCCTCAAATATATATA
196 AATTTTTGAAACAATAATTTCAAAGGGAGTTCAAGACTTCAAGAGGGTGTCCTCAAATATATATA
7071504 TGCATGCATGCATATATTACTGTCTCTTTGGTCCTCTTCTACAGGCAGTTACTCCCAGAAACTGC
261 TGCATGCATGCATATATTACTGTCTCTTTGGTCCTCTTCTACAGGCAGTTACTCCCAGAAACTGC
7071569 AGTTCTAATTTATACATAGCCAAGAATATATGCAACTAAGGTCAAACACTTATACCATAACTGCA
326 AGTTCTAATTTATACATAGCCAAGAATATATGCAACTAAGGTCAAACACTTATACCATAACTGCA
7071634 GAATCATTTGAAAAAGGATTTTCTATTGGGAAATGATTGGCATCAATTATTCGAACAGGATGATG
391 GAATCATTTGAAAAAGGATTTTCTATTGGGAAATGATTGGCATCAATTATTCGAACAGGATGATG
7071699 ATTCAGGGCATGGGATCAAATTTTCCAAGAGATTAGGACTGAAATGATTCAAGGACTGGTTCCTG
456 ATTCAGGGCATGGGATCAAATTTTCCAAGAGATTAGGACTGAAATGATTCAAGGACTGGTTCCTG
7071764 GTATTATCTATGCCATTGCTTCAACAGTTCAGGTAAGCACCAAGGAGCAAAGTAGCCGGAGTAAA
521 GTATTATCTATGCCATTGCTTCAACAGTTCAGGTAAGCACCAAGGAGCAAAGTAGCCGGAGTAAA
7071829 CTATAACATGGAAAAAAGTATTCCTCCTCCTCAACAAAAAAGAACCCATTCCTTCCAATATCAGG
586 CTATAACATGGAAAAAAGTATTCCTCCTCCTCAACAAAAAAGAACCCATTCCTTCCAATATCAGG
7071894 TACAGAGGCTTTATGATTCAAGAAGAGTTAAAACTGTCTATTTACAAATTAATTAATGAATGAGT
651 TACAGAGGCTTTATGATTCAAGAAGAGTTAAAACTGTCTATTTACAAATTAATTAATGAATGAGT
7071959 GAATGAAACATGTAGCACTTTTTTAGACTGGCTGTGAGTTAAAAAGCCCCAT
716 GAATGAAACATGTAGCACTTTTTTAGACTGGCTGTGAGTTAAAAAGCCCCAT
7072011 CATAGTCATTCAGATGTCAGCTTTGCTTTCCTCCCTCTCTCTTCCTACTATTTCACTGCATGAGC
1 CATAGTCATTCAGATGTCAGCTTTGCTTTCCTCCCTCTCTCTTCCTACTATTTCACTGCATGAGC
7072076 AAAAGGCAGAAATATCAAACACAATGAATCTCCTGATACTAGTAGAAATGCAGTTCACTGCTCTT
66 AAAAGGCAGAAATATCAAACACAATGAATCTCCTGATACTAGTAGAAATGCAGTTCACTGCTCTT
7072141 GCGCATATGGATCATTAACTTATATCTAAAGGGTGTAAATTCAGTTGTCACAAAAGGGAATAATT
131 GCGCATATGGATCATTAACTTATATCTAAAGGGTGTAAATTCAGTTGTCACAAAAGGGAATAATT
7072206 AATTTTTGAAACAATAATTTCAAAGGGAGTTCAAGACTTCAAGAGGGTGTCCTCAAATATATATA
196 AATTTTTGAAACAATAATTTCAAAGGGAGTTCAAGACTTCAAGAGGGTGTCCTCAAATATATATA
7072271 TGCATGCATGCATATATTACTGTCTCTTTGGTCCTCTTCTACAGGCAGTTACTCCCAGAAACTGC
261 TGCATGCATGCATATATTACTGTCTCTTTGGTCCTCTTCTACAGGCAGTTACTCCCAGAAACTGC
7072336 AGTTCTAATTTATACATAGCCAAGAATATATGCAACTAAGGTCAAACACTTATACCATAACTGCA
326 AGTTCTAATTTATACATAGCCAAGAATATATGCAACTAAGGTCAAACACTTATACCATAACTGCA
7072401 GAATCATTTGAAAAAGGATTTTCTATTGGGAAATGATTGGCATCAATTATTCGAACAGGATGATG
391 GAATCATTTGAAAAAGGATTTTCTATTGGGAAATGATTGGCATCAATTATTCGAACAGGATGATG
7072466 ATTCAGGGCATGGGATCAAATTTTCCAAGAGATTAGGACTGAAATGATTCAAGGACTGGTTCCTG
456 ATTCAGGGCATGGGATCAAATTTTCCAAGAGATTAGGACTGAAATGATTCAAGGACTGGTTCCTG
7072531 GTATTATCTATGCCATTGCTTCAACAGTTCAGGTAAGCACCAAGGAGCAAAGTAGCCGGAGTAAA
521 GTATTATCTATGCCATTGCTTCAACAGTTCAGGTAAGCACCAAGGAGCAAAGTAGCCGGAGTAAA
7072596 CTATAACATGGAAAAAAGTATTCCTCCTCCTCAACAAAAAAGAACCCATTCCTTCCAATATCAGG
586 CTATAACATGGAAAAAAGTATTCCTCCTCCTCAACAAAAAAGAACCCATTCCTTCCAATATCAGG
*
7072661 TACAGGGGCTTTATGATTCAAGAAGAGTTAAAACTGTCTATTTACAAATTAATTAATGAATGAGT
651 TACAGAGGCTTTATGATTCAAGAAGAGTTAAAACTGTCTATTTACAAATTAATTAATGAATGAGT
7072726 GAATGAAACATGTAGCACTTTTTTAGACTGGCTGTGAGTTAAAAAGCCCCAT
716 GAATGAAACATGTAGCACTTTTTTAGACTGGCTGTGAGTTAAAAAGCCCCAT
7072778 CA
1 CA
7072780 GTTCCAATAT
Statistics
Matches: 1534, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
767 1534 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.30
Consensus pattern (767 bp):
CATAGTCATTCAGATGTCAGCTTTGCTTTCCTCCCTCTCTCTTCCTACTATTTCACTGCATGAGC
AAAAGGCAGAAATATCAAACACAATGAATCTCCTGATACTAGTAGAAATGCAGTTCACTGCTCTT
GCGCATATGGATCATTAACTTATATCTAAAGGGTGTAAATTCAGTTGTCACAAAAGGGAATAATT
AATTTTTGAAACAATAATTTCAAAGGGAGTTCAAGACTTCAAGAGGGTGTCCTCAAATATATATA
TGCATGCATGCATATATTACTGTCTCTTTGGTCCTCTTCTACAGGCAGTTACTCCCAGAAACTGC
AGTTCTAATTTATACATAGCCAAGAATATATGCAACTAAGGTCAAACACTTATACCATAACTGCA
GAATCATTTGAAAAAGGATTTTCTATTGGGAAATGATTGGCATCAATTATTCGAACAGGATGATG
ATTCAGGGCATGGGATCAAATTTTCCAAGAGATTAGGACTGAAATGATTCAAGGACTGGTTCCTG
GTATTATCTATGCCATTGCTTCAACAGTTCAGGTAAGCACCAAGGAGCAAAGTAGCCGGAGTAAA
CTATAACATGGAAAAAAGTATTCCTCCTCCTCAACAAAAAAGAACCCATTCCTTCCAATATCAGG
TACAGAGGCTTTATGATTCAAGAAGAGTTAAAACTGTCTATTTACAAATTAATTAATGAATGAGT
GAATGAAACATGTAGCACTTTTTTAGACTGGCTGTGAGTTAAAAAGCCCCAT
Found at i:7073806 original size:18 final size:18
Alignment explanation
Indices: 7073783--7073818 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7073773 ATAATTTATT
7073783 TTTTTATTATACTTTTTA
1 TTTTTATTATACTTTTTA
7073801 TTTTTATTATACTTTTTA
1 TTTTTATTATACTTTTTA
7073819 GTAACATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTATTATACTTTTTA
Found at i:7074771 original size:21 final size:21
Alignment explanation
Indices: 7074746--7074787 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7074736 CTTCACTCTA
7074746 TTACAATTTTGCCTTCAAGGT
1 TTACAATTTTGCCTTCAAGGT
7074767 TTACAATTTTGCCTTCAAGGT
1 TTACAATTTTGCCTTCAAGGT
7074788 GAGCTTCGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (21 bp):
TTACAATTTTGCCTTCAAGGT
Found at i:7075530 original size:29 final size:29
Alignment explanation
Indices: 7075497--7075561 Score: 89
Period size: 28 Copynumber: 2.3 Consensus size: 29
7075487 AGACTCCACC
*
7075497 TCCACCAAATAAG-CAACCTTTGCCAAGAT
1 TCCACCAAATAAGAAAACC-TTGCCAAGAT
*
7075526 TCCACC-TATAAGAAAACCTTGCCAAGAT
1 TCCACCAAATAAGAAAACCTTGCCAAGAT
7075554 TCCACCAA
1 TCCACCAA
7075562 TCTTCATGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 21 0.68
29 10 0.32
ACGTcount: A:0.38, C:0.32, G:0.09, T:0.20
Consensus pattern (29 bp):
TCCACCAAATAAGAAAACCTTGCCAAGAT
Found at i:7078969 original size:18 final size:18
Alignment explanation
Indices: 7078946--7078982 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7078936 ATTAAGTGGA
7078946 TTTAATATT-GTAATATTT
1 TTTAATATTAGT-ATATTT
7078964 TTTAATATTAGTATATTT
1 TTTAATATTAGTATATTT
7078982 T
1 T
7078983 ATATTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TTTAATATTAGTATATTT
Found at i:7078987 original size:7 final size:7
Alignment explanation
Indices: 7078975--7078999 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7078965 TTAATATTAG
7078975 TATATTT
1 TATATTT
7078982 TATATTT
1 TATATTT
7078989 TATATTT
1 TATATTT
7078996 TATA
1 TATA
7079000 AATATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TATATTT
Found at i:7079250 original size:14 final size:13
Alignment explanation
Indices: 7079224--7079257 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
7079214 TTTTTATTCG
*
7079224 TTTTAAAATATAT
1 TTTTAAAAAATAT
7079237 TTTCTAAAAAATAT
1 TTT-TAAAAAATAT
7079251 TTTTAAA
1 TTTTAAA
7079258 TTTTATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (13 bp):
TTTTAAAAAATAT
Found at i:7082147 original size:5 final size:5
Alignment explanation
Indices: 7082139--7082177 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
7082129 GTAAACTAAA
*
7082139 CGCAC CGCAC CGCAC CGCAC CGCAC CGCAC CACAC CGCA
1 CGCAC CGCAC CGCAC CGCAC CGCAC CGCAC CGCAC CGCA
7082178 TCCAATCGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.23, C:0.59, G:0.18, T:0.00
Consensus pattern (5 bp):
CGCAC
Found at i:7082821 original size:19 final size:21
Alignment explanation
Indices: 7082794--7082834 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
7082784 TAATATATAT
7082794 ATTAATTTTTAT-T-AAACAA
1 ATTAATTTTTATGTAAAACAA
*
7082813 ATTATTTTTTATGTAAAACAA
1 ATTAATTTTTATGTAAAACAA
7082834 A
1 A
7082835 CAGTTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 1 0.05
21 7 0.37
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (21 bp):
ATTAATTTTTATGTAAAACAA
Found at i:7083913 original size:15 final size:15
Alignment explanation
Indices: 7083889--7083931 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
7083879 CATTTCAAAG
* *
7083889 ATAAATCCTAATTCC
1 ATAAACCCTAATTAC
*
7083904 CTAAACCCTAATTAC
1 ATAAACCCTAATTAC
7083919 ATAAACCCATAAT
1 ATAAACCC-TAAT
7083932 CTTATGCGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 19 0.83
16 4 0.17
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAAACCCTAATTAC
Found at i:7084200 original size:108 final size:108
Alignment explanation
Indices: 7084007--7084222 Score: 423
Period size: 108 Copynumber: 2.0 Consensus size: 108
7083997 CATTCGAAAA
7084007 CCTACCTATATCTAAATTCCTCATCCATGGAAAATAAGGAGAATTTGGATTTCTCACACAGATAT
1 CCTACCTATATCTAAATTCCTCATCCATGGAAAATAAGGAGAATTTGGATTTCTCACACAGATAT
*
7084072 GATTACTCGTAATCAGCTAGGAAGTTCTTTTTGCACCATCTTT
66 GATTACTCGTAATCAACTAGGAAGTTCTTTTTGCACCATCTTT
7084115 CCTACCTATATCTAAATTCCTCATCCATGGAAAATAAGGAGAATTTGGATTTCTCACACAGATAT
1 CCTACCTATATCTAAATTCCTCATCCATGGAAAATAAGGAGAATTTGGATTTCTCACACAGATAT
7084180 GATTACTCGTAATCAACTAGGAAGTTCTTTTTGCACCATCTTT
66 GATTACTCGTAATCAACTAGGAAGTTCTTTTTGCACCATCTTT
7084223 TACAATGCCC
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (108 bp):
CCTACCTATATCTAAATTCCTCATCCATGGAAAATAAGGAGAATTTGGATTTCTCACACAGATAT
GATTACTCGTAATCAACTAGGAAGTTCTTTTTGCACCATCTTT
Found at i:7086288 original size:21 final size:22
Alignment explanation
Indices: 7086244--7086294 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
7086234 TGGCTAGTAC
7086244 AAATAACAAAAACAATAGC-AA
1 AAATAACAAAAACAATAGCAAA
7086265 AAATAACAAAAA-AA-AGGCAGAA
1 AAATAACAAAAACAATA-GCA-AA
7086287 AAATAACA
1 AAATAACA
7086295 GCACCAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 1 0.04
20 4 0.15
21 12 0.44
22 10 0.37
ACGTcount: A:0.73, C:0.12, G:0.08, T:0.08
Consensus pattern (22 bp):
AAATAACAAAAACAATAGCAAA
Found at i:7086833 original size:22 final size:21
Alignment explanation
Indices: 7086772--7086834 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
7086762 TTTTTGACCC
7086772 TTTAAAATTT-TGACTCTAATTTT
1 TTTAAAATTTAT--CTC-AATTTT
*
7086795 TTTAAAATTTCTCTCAATTTT
1 TTTAAAATTTATCTCAATTTT
* *
7086816 TTTTAACTTTATCGTCAAT
1 TTTAAAATTTATC-TCAAT
7086835 ATGCTTTAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 16 0.46
22 8 0.23
23 10 0.29
24 1 0.03
ACGTcount: A:0.29, C:0.13, G:0.03, T:0.56
Consensus pattern (21 bp):
TTTAAAATTTATCTCAATTTT
Found at i:7089060 original size:14 final size:14
Alignment explanation
Indices: 7089041--7089079 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
7089031 TTATTTCACT
7089041 GAAAATGATTTCTA
1 GAAAATGATTTCTA
*
7089055 GAAAATAATTTCTA
1 GAAAATGATTTCTA
7089069 GAAAATGATTT
1 GAAAATGATTT
7089080 ACTTTCTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:7089683 original size:18 final size:18
Alignment explanation
Indices: 7089628--7089688 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
7089618 AATATGCATG
*
7089628 TTTAATAATATTGAAA-AA
1 TTTAATAAT-TTTAAATAA
*
7089646 TATAATAATTTATATTAATAA
1 TTTAATAATTT-TA--AATAA
7089667 TTTAATAATTTTAAAT-A
1 TTTAATAATTTTAAATAA
7089684 TTTAA
1 TTTAA
7089689 AAAATAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
17 8 0.22
18 12 0.33
20 4 0.11
21 12 0.33
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
TTTAATAATTTTAAATAA
Found at i:7089715 original size:42 final size:46
Alignment explanation
Indices: 7089634--7089722 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 46
7089624 CATGTTTAAT
* *
7089634 AATATTGAAAAATATAATAATTTATATTAATAATTTAATAATTTTA
1 AATATTGAAAAATATAATAATTTATATTAATAATATAATAATATTA
*
7089680 AATATTTAAAAA-ATAA-AA-TT-TATT-ATCAATATAATAATATTA
1 AATATTGAAAAATATAATAATTTATATTAAT-AATATAATAATATTA
7089722 A
1 A
7089723 GCTTGGTTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
41 2 0.05
42 18 0.46
43 2 0.05
44 2 0.05
45 4 0.10
46 11 0.28
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (46 bp):
AATATTGAAAAATATAATAATTTATATTAATAATATAATAATATTA
Found at i:7093398 original size:20 final size:20
Alignment explanation
Indices: 7093373--7093424 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 20
7093363 GAAAAAGTTG
7093373 TTTTTACATATATT-AATAAA
1 TTTTTACATATATTAAAT-AA
* *
7093393 TTTTT--ATATTTTAAATTA
1 TTTTTACATATATTAAATAA
7093411 TTTTTACATATATT
1 TTTTTACATATATT
7093425 GCAATGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 12 0.46
19 3 0.12
20 11 0.42
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTACATATATTAAATAA
Found at i:7097425 original size:37 final size:38
Alignment explanation
Indices: 7097382--7097674 Score: 136
Period size: 37 Copynumber: 7.4 Consensus size: 38
7097372 TGCTTAATTG
*
7097382 TTTTATTAAATTATATAAGAATATTAAT-TATTAATAA
1 TTTTATTAAATTATATAATAATATTAATATATTAATAA
*
7097419 TTTTATTAAATTATATATTTTAAT-TATAATATATTTAATAA
1 TTTTATTAAATTATATA--ATAATAT-TAATATA-TTAATAA
* * * * *
7097460 TAATTATGTTAAATTATAT-TTTATAGTATCATATATT-ATGA
1 T--TT-TATTAAATTATATAATAATA-T-TAATATATTAATAA
* * * * *
7097501 TTTGAGTAAATTCATATAAGAATATTGAT-TATTAAGAA
1 TTTTATTAAATT-ATATAATAATATTAATATATTAATAA
*
7097539 TTTTATTAAATTATATATTTTAAT-TATAATATATTTAATAA
1 TTTTATTAAATTATATA--ATAATAT-TAATATA-TTAATAA
* * * * * *
7097580 TAATTATGTTAAATTATCTTTATAGTA-TCATATATT-ATGA
1 T--TT-TATTAAATTAT-ATAATAATATTAATATATTAATAA
* * * *
7097620 TTTGAGTAAATTCATATAAGAATATTAAT-TATTAAGAA
1 TTTTATTAAATT-ATATAATAATATTAATATATTAATAA
*
7097658 TTTTTTTAAATTATATA
1 TTTTATTAAATTATATA
7097675 TTTTAATTAT
Statistics
Matches: 189, Mismatches: 41, Indels: 52
0.67 0.15 0.18
Matches are distributed among these distances:
37 46 0.24
38 41 0.22
39 20 0.11
40 11 0.06
41 25 0.13
42 8 0.04
43 15 0.08
44 22 0.12
45 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (38 bp):
TTTTATTAAATTATATAATAATATTAATATATTAATAA
Found at i:7097451 original size:18 final size:18
Alignment explanation
Indices: 7097405--7097452 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
7097395 TATAAGAATA
*
7097405 TTAATTATTA-ATA-ATT
1 TTAATTATAATATATATT
7097421 TT-ATTA-AATTATATATT
1 TTAATTATAA-TATATATT
7097438 TTAATTATAATATAT
1 TTAATTATAATATAT
7097453 TTAATAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 4 0.15
16 5 0.19
17 5 0.19
18 9 0.35
19 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATTATAATATATATT
Found at i:7097452 original size:16 final size:16
Alignment explanation
Indices: 7097405--7097477 Score: 55
Period size: 16 Copynumber: 4.6 Consensus size: 16
7097395 TATAAGAATA
7097405 TTAATTATTAATA-ATT
1 TTAATTA-TAATATATT
*
7097421 TT-ATTAAATTATATATT
1 TTAATT--ATAATATATT
7097438 TTAATTATAATATA-T
1 TTAATTATAATATATT
*
7097453 TTAATAATAAT-TATGT
1 TTAATTATAATATAT-T
*
7097469 TAAATTATA
1 TTAATTATA
7097478 TTTTATAGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
14 2 0.04
15 14 0.30
16 21 0.46
17 6 0.13
18 3 0.07
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (16 bp):
TTAATTATAATATATT
Found at i:7097572 original size:16 final size:16
Alignment explanation
Indices: 7097551--7097596 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
7097541 TTATTAAATT
7097551 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
7097567 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
7097582 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
7097597 CTTTATAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:7097658 original size:119 final size:120
Alignment explanation
Indices: 7097388--7097713 Score: 593
Period size: 119 Copynumber: 2.7 Consensus size: 120
7097378 ATTGTTTTAT
*
7097388 TAAATT-ATATAAGAATATTAATTATTAATAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
*
7097452 TTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAG
66 TTTAATAATAATTATGTTAAATTATACTTTATAGTATCATATATTATGATTTGAG
*
7097507 TAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
7097572 TTTAATAATAATTATGTTAAATTAT-CTTTATAGTATCATATATTATGATTTGAG
66 TTTAATAATAATTATGTTAAATTATACTTTATAGTATCATATATTATGATTTGAG
*
7097626 TAAATTCATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATATTTTAATTATAATATA
1 TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
7097691 TTTAATAATAATTATGTTTAAAT
66 TTTAATAATAATTATG-TTAAAT
7097714 ATGATTAAAT
Statistics
Matches: 200, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
119 113 0.56
120 87 0.44
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
TAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA
TTTAATAATAATTATGTTAAATTATACTTTATAGTATCATATATTATGATTTGAG
Found at i:7097689 original size:16 final size:16
Alignment explanation
Indices: 7097670--7097711 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7097660 TTTTTAAATT
*
7097670 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7097686 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7097701 AT-TATGTTTAA
1 ATATAT-TTTAA
7097712 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7097694 original size:15 final size:14
Alignment explanation
Indices: 7097661--7097702 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
7097651 TTAAGAATTT
7097661 TTTTAAATTAT-ATA
1 TTTT-AATTATAATA
7097675 TTTTAATTATAATA
1 TTTTAATTATAATA
*
7097689 TATTTAATAATAAT
1 T-TTTAATTATAAT
7097703 TATGTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 6 0.24
14 8 0.32
15 11 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTTAATTATAATA
Found at i:7097907 original size:44 final size:45
Alignment explanation
Indices: 7097857--7097946 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
7097847 CCTCTATTCT
*
7097857 ATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTAC
1 ATTCAACCAAACA-ATAGATTTACTATTACGCCTCTATTCCAATAC
* * *
7097901 ATTCAACCAAACAATTGATTTGCTATTACGCGTCTATTCCAATAC
1 ATTCAACCAAACAATAGATTTACTATTACGCCTCTATTCCAATAC
7097946 A
1 A
7097947 GCGAACCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.03
44 15 0.38
45 24 0.60
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.31
Consensus pattern (45 bp):
ATTCAACCAAACAATAGATTTACTATTACGCCTCTATTCCAATAC
Found at i:7098410 original size:24 final size:23
Alignment explanation
Indices: 7098377--7098428 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 23
7098367 TCAAATACTA
*
7098377 AAATTTATCCCTGAATTTTATTT
1 AAATTTATCCCTAAATTTTATTT
7098400 ACAATTTATCCCTAAATTTTATTT
1 A-AATTTATCCCTAAATTTTATTT
7098424 AAATT
1 AAATT
7098429 ACGACTTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.35, C:0.13, G:0.02, T:0.50
Consensus pattern (23 bp):
AAATTTATCCCTAAATTTTATTT
Found at i:7098611 original size:19 final size:19
Alignment explanation
Indices: 7098580--7098628 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
7098570 TTGTTGCTCG
7098580 TATTATT-TTTATTATTA-
1 TATTATTATTTATTATTAC
*
7098597 TCATTATTATTTATTTTTAC
1 T-ATTATTATTTATTATTAC
7098617 TATTATTATTTA
1 TATTATTATTTA
7098629 ATTAGTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 1 0.04
18 6 0.21
19 20 0.71
20 1 0.04
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTATTATTTATTATTAC
Found at i:7100198 original size:21 final size:20
Alignment explanation
Indices: 7100161--7100199 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7100151 TGTCAATAAC
*
7100161 CAAAAGTTCTTACAAACAAA
1 CAAAAGTTCTGACAAACAAA
*
7100181 CAAAATGTTCTGAGAAACA
1 CAAAA-GTTCTGACAAACA
7100200 GACGTATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.51, C:0.18, G:0.10, T:0.21
Consensus pattern (20 bp):
CAAAAGTTCTGACAAACAAA
Found at i:7101552 original size:15 final size:16
Alignment explanation
Indices: 7101532--7101561 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7101522 CCTTTTTAAA
7101532 AAATAAA-ATAAAAAC
1 AAATAAATATAAAAAC
7101547 AAATAAATATAAAAA
1 AAATAAATATAAAAA
7101562 ACTCACAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (16 bp):
AAATAAATATAAAAAC
Found at i:7104607 original size:24 final size:24
Alignment explanation
Indices: 7104575--7104629 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
7104565 AGATTAAACT
* *
7104575 TGCAAGATCAGTTGCAAGCGTAGC
1 TGCAGGATCAGTTGCAAGCGCAGC
7104599 TGCAGGATCAGTTGCAAGCGCAGC
1 TGCAGGATCAGTTGCAAGCGCAGC
7104623 TGCAGGA
1 TGCAGGA
7104630 ATAATTAGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.27, C:0.22, G:0.33, T:0.18
Consensus pattern (24 bp):
TGCAGGATCAGTTGCAAGCGCAGC
Found at i:7107622 original size:41 final size:41
Alignment explanation
Indices: 7107577--7107932 Score: 523
Period size: 41 Copynumber: 8.7 Consensus size: 41
7107567 GGTTTTAAAA
* * *
7107577 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGTTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
7107618 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
7107659 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
7107700 CCTAGCAGGCTAAATGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
7107741 CCTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
7107782 CCTAGTAGGCTAAGTGCCGGTGATTTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
7107823 CCTAGCAGGCTAAGTGCCGGTGAACTGGATTAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
7107864 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGACTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
7107905 CCTAACAAGCTAAGTGCCAGTGAATCTG
1 CCTAGCAGGCTAAGTGCCGGTG-ATCTG
7107933 TTTAAATTAA
Statistics
Matches: 290, Mismatches: 24, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
41 286 0.99
42 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:7114542 original size:18 final size:17
Alignment explanation
Indices: 7114509--7114547 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7114499 TTGTATAAAT
7114509 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7114527 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7114544 TGTG
1 TGTG
7114548 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7114827 original size:23 final size:23
Alignment explanation
Indices: 7114773--7114847 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
7114763 AGTGTTATTG
*
7114773 ATCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7114796 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7114818 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7114841 ATCAGTG
1 ATCAGTG
7114848 TGGCACTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
22 20 0.42
23 28 0.58
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7118730 original size:44 final size:44
Alignment explanation
Indices: 7118650--7119029 Score: 151
Period size: 44 Copynumber: 8.5 Consensus size: 44
7118640 TACCATGGCG
* *
7118650 AATCTTATCTCCCTAAAGTTGCAATGGAGCATATTAAAGCTACA
1 AATCTTATCTCCCTAAAGTTGCAATGAAGCAAATTAAAGCTACA
* * *
7118694 AATTTTATCTCCCTGAAA-TTGCAGTGAAGCAAATTAAAGCTATA
1 AATCTTATCTCCCT-AAAGTTGCAATGAAGCAAATTAAAGCTACA
* * * * * * * * * **
7118738 AATCTTATCTCTCTAAAGATGTAGTGGAGTGAGATGAAA-CAATG
1 AATCTTATCTCCCTAAAGTTGCAATGAAG-CAAATTAAAGCTACA
* * * * *
7118782 AATCTTATCTCCATGAAGTTGCAATGGAGCAGATTGAAA-CTATA
1 AATCTTATCTCCCTAAAGTTGCAATGAAGCAAATT-AAAGCTACA
* * * *
7118826 AATCTTATTTCCCCGAAA-TTGCAGTGGAA-CAGATTATAGCTAGAAGTTACA
1 AATCTTATCT-CCCTAAAGTTGCAAT-GAAGCA-A--AT---TA-AAGCTACA
* * **** * * *
7118877 AATCTTATCTCTCTGAAGTTATGGTGGAGCAGATTGAAGCTACA
1 AATCTTATCTCCCTAAAGTTGCAATGAAGCAAATTAAAGCTACA
* * * * * * * *
7118921 AATCCTATCTCCCTGACGTTGCAGTGGAGCAGATTGAAGCTACT
1 AATCTTATCTCCCTAAAGTTGCAATGAAGCAAATTAAAGCTACA
* * * * * *
7118965 AATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATTGAAGCGACA
1 AATCTTATCTCCCTAAAGTTGCAATGAAGCAAATTAAAGCTACA
* *
7119009 ATTCATATAC-CCCTAAAGTTG
1 AATCTTAT-CTCCCTAAAGTTG
7119030 AAGTAGGTTA
Statistics
Matches: 258, Mismatches: 61, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
43 7 0.03
44 202 0.78
45 17 0.07
47 2 0.01
48 2 0.01
49 1 0.00
50 9 0.03
51 18 0.07
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGCAATGAAGCAAATTAAAGCTACA
Found at i:7120522 original size:4 final size:4
Alignment explanation
Indices: 7120501--7120541 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
7120491 CCCTTTATAG
* *
7120501 ATTT -TTT ATAT A-TT ATTT ATTT ATTT ATTT ATCT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT
7120542 ATCTCTTACC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
3 5 0.16
4 26 0.84
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:7120530 original size:12 final size:12
Alignment explanation
Indices: 7120494--7120541 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
7120484 ATTTCAACCC
*
7120494 TTTATAGATTT-
1 TTTATATATTTA
7120505 TTTATATA-TTA
1 TTTATATATTTA
*
7120516 TTTATTTATTTA
1 TTTATATATTTA
*
7120528 TTTATCTATTTA
1 TTTATATATTTA
7120540 TT
1 TT
7120542 ATCTCTTACC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
10 2 0.06
11 14 0.44
12 16 0.50
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTATATATTTA
Found at i:7122595 original size:34 final size:35
Alignment explanation
Indices: 7122551--7122617 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7122541 CAGTAAAATA
* *
7122551 TTTTCCGTAAAATGATTT-TTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
7122585 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
7122618 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.48
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:7122621 original size:14 final size:15
Alignment explanation
Indices: 7122545--7122621 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
7122535 GATTGCCAGT
* *
7122545 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
7122559 AAAATGATTTT-TGG
1 AAAATGATTTTCTGG
*
7122573 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
7122593 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
7122608 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
7122622 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 20 0.40
15 16 0.32
16 1 0.02
18 1 0.02
19 4 0.08
20 8 0.16
ACGTcount: A:0.34, C:0.08, G:0.14, T:0.44
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:7125397 original size:10 final size:10
Alignment explanation
Indices: 7125382--7125408 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7125372 AGAGATAACA
7125382 GAAGAAGGTT
1 GAAGAAGGTT
7125392 GAAGAAGGTT
1 GAAGAAGGTT
7125402 GAAGAAG
1 GAAGAAG
7125409 AGAAAGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.41, T:0.15
Consensus pattern (10 bp):
GAAGAAGGTT
Found at i:7127397 original size:18 final size:19
Alignment explanation
Indices: 7127370--7127411 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7127360 TTATGCCAAC
*
7127370 ATTTTTTTAT-ACAATTTA
1 ATTTTATTATCACAATTTA
*
7127388 ATTTTATTATCCACACTTTA
1 ATTTTATTAT-CACAATTTA
7127408 ATTT
1 ATTT
7127412 CTCCATCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 9 0.45
20 11 0.55
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTTATTATCACAATTTA
Found at i:7134388 original size:13 final size:14
Alignment explanation
Indices: 7134372--7134413 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
7134362 TTTCAATTTT
7134372 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
7134385 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
7134400 ATTTTAAATAATAT
1 ATTTT-AATAATAT
7134414 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:7134398 original size:16 final size:16
Alignment explanation
Indices: 7134376--7134412 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
7134366 AATTTTATTT
7134376 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
7134393 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
7134408 TAATA
1 TAATA
7134413 TTCTTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:7134464 original size:21 final size:23
Alignment explanation
Indices: 7134440--7134490 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 23
7134430 AAAATATTTA
* *
7134440 ATATTAATATTTCAA-TA-ACAT
1 ATATTAATATTACAATTATAAAT
7134461 ATATT--TATTACAATTATAAAT
1 ATATTAATATTACAATTATAAAT
7134482 ATATTAATA
1 ATATTAATA
7134491 ATAAATGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
19 7 0.29
20 2 0.08
21 13 0.54
23 2 0.08
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (23 bp):
ATATTAATATTACAATTATAAAT
Found at i:7142124 original size:24 final size:25
Alignment explanation
Indices: 7142027--7142124 Score: 76
Period size: 25 Copynumber: 4.0 Consensus size: 25
7142017 GTCATTAGGG
* *
7142027 TTACCGAT-TTCAGCTCTTATGAGC
1 TTACCGTTATTCAGCTCGTATGAGC
* * * * *
7142051 ATATCGATATTCAACTTGTATGAGC
1 TTACCGTTATTCAGCTCGTATGAGC
* * *
7142076 TTACTGTTATTCAGCTCGGAGGAGC
1 TTACCGTTATTCAGCTCGTATGAGC
7142101 TTACCGTT-TATC-GCTCGTATGAGC
1 TTACCGTTAT-TCAGCTCGTATGAGC
7142125 ATACATGTAC
Statistics
Matches: 56, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
24 17 0.30
25 39 0.70
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.36
Consensus pattern (25 bp):
TTACCGTTATTCAGCTCGTATGAGC
Found at i:7155444 original size:21 final size:21
Alignment explanation
Indices: 7155418--7155463 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7155408 ATATGAAGCT
*
7155418 TTCTTCTTCTTC-TTTTCCTTC
1 TTCTTCTTC-TCATTTTCATTC
7155439 TTCTTCTTCTCATTTTCATTC
1 TTCTTCTTCTCATTTTCATTC
7155460 TTCT
1 TTCT
7155464 AATCTAGGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.65
Consensus pattern (21 bp):
TTCTTCTTCTCATTTTCATTC
Found at i:7155516 original size:27 final size:27
Alignment explanation
Indices: 7155479--7155543 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
7155469 AGGGCTTTTG
7155479 AAAAATTAAAAGGAAAATTAATTAATA
1 AAAAATTAAAAGGAAAATTAATTAATA
*
7155506 AAAAATTAAAAGGAAAATTAATTAATT
1 AAAAATTAAAAGGAAAATTAATTAATA
*
7155533 AAAAGTTAAAA
1 AAAAATTAAAA
7155544 TGATAGGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (27 bp):
AAAAATTAAAAGGAAAATTAATTAATA
Found at i:7156062 original size:5 final size:5
Alignment explanation
Indices: 7156052--7156093 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
7156042 ATGAATGAAA
7156052 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA
7156094 CAAGGTTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:7156426 original size:37 final size:37
Alignment explanation
Indices: 7156376--7156451 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
7156366 TTTTTTTGTA
7156376 AATGATCTGATTTTGTTTGGCCAAGCAGAAGAGGATC
1 AATGATCTGATTTTGTTTGGCCAAGCAGAAGAGGATC
7156413 AATGATCTGATTTTGTTTGGCCAAGCAGAAGAGGATC
1 AATGATCTGATTTTGTTTGGCCAAGCAGAAGAGGATC
7156450 AA
1 AA
7156452 GCTACAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (37 bp):
AATGATCTGATTTTGTTTGGCCAAGCAGAAGAGGATC
Found at i:7158343 original size:9 final size:9
Alignment explanation
Indices: 7158329--7158359 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7158319 GTTAAACAAA
7158329 TCGAGTTAT
1 TCGAGTTAT
*
7158338 TCGAGTTAA
1 TCGAGTTAT
7158347 TCGAGTTAT
1 TCGAGTTAT
7158356 TCGA
1 TCGA
7158360 ATCAAGTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:7158433 original size:9 final size:9
Alignment explanation
Indices: 7158414--7158450 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
7158404 TGAGTTTTCA
7158414 AATTCGAAT
1 AATTCGAAT
7158423 AACTT-GAAT
1 AA-TTCGAAT
7158432 AATTCGAAT
1 AATTCGAAT
7158441 AATTCGAAT
1 AATTCGAAT
7158450 A
1 A
7158451 TCAAACTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7159349 original size:5 final size:5
Alignment explanation
Indices: 7159339--7159379 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
7159329 GAACAAATAT
7159339 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
7159380 ATTCTATCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (5 bp):
ATTCG
Found at i:7169575 original size:33 final size:31
Alignment explanation
Indices: 7169520--7169583 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 31
7169510 GAAATTTAAT
*
7169520 TTTTAATTTTATTTTATTTTATTTTTGTAAA
1 TTTTAATTTTATCTTATTTTATTTTTGTAAA
7169551 TTTTAATTTTTAATCTTATTTTATTTTTGTAAA
1 TTTTAA-TTTT-ATCTTATTTTATTTTTGTAAA
7169584 CTTAAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 6 0.20
32 4 0.13
33 20 0.67
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.69
Consensus pattern (31 bp):
TTTTAATTTTATCTTATTTTATTTTTGTAAA
Found at i:7171892 original size:31 final size:31
Alignment explanation
Indices: 7171835--7171894 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
7171825 AGAGGTGGGA
*
7171835 TGGGAAGGGAATAAAAGTTTTAGGGAAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGAAAAAG
* * *
7171866 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGAAAAA
7171895 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGAAAAAG
Found at i:7172124 original size:9 final size:9
Alignment explanation
Indices: 7172110--7172146 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
7172100 TATAGTTTGA
7172110 TATTCGAAT
1 TATTCGAAT
7172119 TATTCGAAT
1 TATTCGAAT
*
7172128 TATTCGAGT
1 TATTCGAAT
*
7172137 TATTCAAAT
1 TATTCGAAT
7172146 T
1 T
7172147 CAAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7174729 original size:42 final size:43
Alignment explanation
Indices: 7174620--7174777 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
7174610 AGCTCGTACA
* * **
7174620 ACGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATAACG
1 ACGCCAATGTCCCAGACATGGTCTTACACATAATCAAATAACG
* * * * *
7174663 ATGCCACTGTCCTAGACAGGGTCTTACACATAATCATAT-ACG
1 ACGCCAATGTCCCAGACATGGTCTTACACATAATCAAATAACG
* *
7174705 ACGCCAATGTCCCAAACATGGTCTTACACGTAAATCTCAAAT--CG
1 ACGCCAATGTCCCAGACATGGTCTTACACAT-AA--TCAAATAACG
* *
7174749 ATGCCAACT-TCCCAGACGTGGTCTTACAC
1 ACGCCAA-TGTCCCAGACATGGTCTTACAC
7174778 GATATCACAT
Statistics
Matches: 92, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
42 28 0.30
43 32 0.35
44 26 0.28
45 6 0.07
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
ACGCCAATGTCCCAGACATGGTCTTACACATAATCAAATAACG
Found at i:7177117 original size:19 final size:20
Alignment explanation
Indices: 7177069--7177117 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
7177059 CACACAGAAG
7177069 CGGTGTTGCAACATCTGAAT
1 CGGTGTTGCAACATCTGAAT
**
7177089 CTTATGTTGCAACATCT-AAT
1 C-GGTGTTGCAACATCTGAAT
7177109 CGGTGTTGC
1 CGGTGTTGC
7177118 GGCATTCGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 6 0.25
20 5 0.21
21 13 0.54
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.35
Consensus pattern (20 bp):
CGGTGTTGCAACATCTGAAT
Found at i:7179684 original size:37 final size:37
Alignment explanation
Indices: 7179636--7179715 Score: 124
Period size: 37 Copynumber: 2.2 Consensus size: 37
7179626 GTTTGTGCAC
* *
7179636 AACACTCATCAGTATAACTGAAGTAAAATGTGTGCCT
1 AACACTAATCAGTATAACTAAAGTAAAATGTGTGCCT
* *
7179673 AGCACTAATCAGTATAACTAAAGTAAAATGTGTGTCT
1 AACACTAATCAGTATAACTAAAGTAAAATGTGTGCCT
7179710 AACACT
1 AACACT
7179716 CATCGAAACA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (37 bp):
AACACTAATCAGTATAACTAAAGTAAAATGTGTGCCT
Found at i:7188798 original size:30 final size:30
Alignment explanation
Indices: 7188763--7188826 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
7188753 CAAAACAGGT
* *
7188763 TGAGAAGATTGTAGGGTTGACGAAGGTGCA
1 TGAGAAGATTGGACGGTTGACGAAGGTGCA
* *
7188793 TGAGAAGATTGGACTGTTGATGAAGGTGCA
1 TGAGAAGATTGGACGGTTGACGAAGGTGCA
7188823 TGAG
1 TGAG
7188827 CTGTCAAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.06, G:0.39, T:0.25
Consensus pattern (30 bp):
TGAGAAGATTGGACGGTTGACGAAGGTGCA
Found at i:7195526 original size:6 final size:6
Alignment explanation
Indices: 7195515--7195546 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
7195505 AAGCTTTCGC
7195515 AATAAA AATAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AA
7195547 GCTTTTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:7195946 original size:25 final size:25
Alignment explanation
Indices: 7195918--7195983 Score: 98
Period size: 25 Copynumber: 2.6 Consensus size: 25
7195908 ACTGTCCTTT
*
7195918 ATAGTATATCCTGAAACTACTATAG
1 ATAGTATATACTGAAACTACTATAG
*
7195943 ATAGTATATACTGAGACTACTATAG
1 ATAGTATATACTGAAACTACTATAG
7195968 ATAG-ACTATACTGAAA
1 ATAGTA-TATACTGAAA
7195984 ACACTTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (25 bp):
ATAGTATATACTGAAACTACTATAG
Found at i:7198386 original size:18 final size:17
Alignment explanation
Indices: 7198360--7198407 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
7198350 AATAAAAATA
7198360 AACGTTTTGAAATTGAAT
1 AACGTTTTGAAA-TGAAT
*
7198378 AACGATTTGTAAATGAAT
1 AACGTTTTG-AAATGAAT
*
7198396 AATGTTTTGAAA
1 AACGTTTTGAAA
7198408 ACGAACGACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.42, C:0.04, G:0.17, T:0.38
Consensus pattern (17 bp):
AACGTTTTGAAATGAAT
Found at i:7203646 original size:45 final size:44
Alignment explanation
Indices: 7203595--7203731 Score: 186
Period size: 45 Copynumber: 3.0 Consensus size: 44
7203585 ATGATACTCG
* *
7203595 GTGGAATCAGCACATAGAAACCACCTTCATAATCAATAGTACCCA
1 GTGGAATCAGCACACAGAAACCACCTTTATAATCAAT-GTACCCA
* *
7203640 GTGGAATCAGCACACAGCAACCACCTTTATAATCAATGATACCCG
1 GTGGAATCAGCACACAGAAACCACCTTTATAATCAATG-TACCCA
*
7203685 GTGGAATCAGCACACA-ACAACCACCTTTATAATTAATGGTACCCA
1 GTGGAATCAGCACACAGA-AACCACCTTTATAATCAAT-GTACCCA
7203730 GT
1 GT
7203732 ACACGTAGTA
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
44 1 0.01
45 80 0.98
46 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (44 bp):
GTGGAATCAGCACACAGAAACCACCTTTATAATCAATGTACCCA
Found at i:7203687 original size:90 final size:88
Alignment explanation
Indices: 7203552--7203731 Score: 238
Period size: 90 Copynumber: 2.0 Consensus size: 88
7203542 CAGATACACG
* * * * *
7203552 GTGGATCAGCACATAGCACCACTCTTATAGTTAATGATACTCGGTGGAATCAGCACATAGA-AAC
1 GTGGATCAGCACACAGCACCACTCTTATAATCAATGATACCCGGTGGAATCAGCACACA-ACAAC
7203616 CACCTTCATAATCAATAGTACCCA
65 CACCTTCATAATCAATAGTACCCA
7203640 GTGGAATCAGCACACAGCAACCAC-CTTTATAATCAATGATACCCGGTGGAATCAGCACACAACA
1 GTGG-ATCAGCACACAGC-ACCACTC-TTATAATCAATGATACCCGGTGGAATCAGCACACAACA
* * *
7203704 ACCACCTTTATAATTAATGGTACCCA
63 ACCACCTTCATAATCAATAGTACCCA
7203730 GT
1 GT
7203732 ACACGTAGTA
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
88 4 0.05
89 14 0.17
90 62 0.77
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (88 bp):
GTGGATCAGCACACAGCACCACTCTTATAATCAATGATACCCGGTGGAATCAGCACACAACAACC
ACCTTCATAATCAATAGTACCCA
Found at i:7209582 original size:39 final size:39
Alignment explanation
Indices: 7209528--7209704 Score: 255
Period size: 39 Copynumber: 4.5 Consensus size: 39
7209518 AACATGTTTT
* *
7209528 TGAGTATTGTAATATATGCTTGAATGATATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
7209567 TGAGTATTATGATATATGCTTGAATGCTATGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
*
7209606 TGAGTATTGTGATATATGCTTGAATGTTTTGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
** * *
7209645 TTTGTATTGTGATATATACTTGAATGTTGTGTGATTATA
1 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
* *
7209684 TGTGTAATGTGATATATGCTT
1 TGAGTATTGTGATATATGCTT
7209705 TAAAGTGAAT
Statistics
Matches: 125, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.47
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
Found at i:7209719 original size:23 final size:23
Alignment explanation
Indices: 7209689--7209742 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
7209679 TTATATGTGT
*
7209689 AATGTGATATATGCTTTAAAGTG
1 AATGTGATATATGCTTAAAAGTG
7209712 AATGTGATATATGCTTAAAAGTG
1 AATGTGATATATGCTTAAAAGTG
7209735 AATGTGAT
1 AATGTGAT
7209743 TATAATATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (23 bp):
AATGTGATATATGCTTAAAAGTG
Found at i:7209723 original size:39 final size:40
Alignment explanation
Indices: 7209528--7209724 Score: 167
Period size: 39 Copynumber: 5.0 Consensus size: 40
7209518 AACATGTTTT
* *
7209528 TGAGTATTGTAATATATGC-TTGAA-TGATATGTGATTATA
1 TGAGTATTGTGATATATGCTTTAAAGTGA-ATGTGATTATA
* * *
7209567 TGAGTATTATGATATATGC-TTGAA-TGCTATGTGATTATA
1 TGAGTATTGTGATATATGCTTTAAAGTG-AATGTGATTATA
* * **
7209606 TGAGTATTGTGATATATGCTTGAATGT-TTTGTGATTATA
1 TGAGTATTGTGATATATGCTTTAAAGTGAATGTGATTATA
** * * *
7209645 TTTGTATTGTGATATATACTTGAATGTTG--TGTGATTATA
1 TGAGTATTGTGATATATGCTTTAAAG-TGAATGTGATTATA
* *
7209684 TGTGTAATGTGATATATGCTTTAAAGTGAATGTGA-TATA
1 TGAGTATTGTGATATATGCTTTAAAGTGAATGTGATTATA
7209723 TG
1 TG
7209725 CTTAAAAGTG
Statistics
Matches: 135, Mismatches: 16, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 124 0.92
40 8 0.06
41 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.22, T:0.46
Consensus pattern (40 bp):
TGAGTATTGTGATATATGCTTTAAAGTGAATGTGATTATA
Found at i:7209723 original size:78 final size:79
Alignment explanation
Indices: 7209528--7209724 Score: 222
Period size: 78 Copynumber: 2.5 Consensus size: 79
7209518 AACATGTTTT
* * * *
7209528 TGAGTATTGTAATATATGC-TTGAA-TGATATGTGATTATATGAGTATTATGATATATGCTTGAA
1 TGAGTAATGTGATATATGCTTTAAAGTGA-ATGTGATTATATGAGTATTATGATATATACTTGAA
7209591 TGCTATGTGATTATA
65 TGCTATGTGATTATA
* * * ** ** *
7209606 TGAGTATTGTGATATATGCTTGAATGT-TTTGTGATTATATTTGTATTGTGATATATACTTGAAT
1 TGAGTAATGTGATATATGCTTTAAAGTGAATGTGATTATATGAGTATTATGATATATACTTGAAT
* *
7209670 GTTGTGTGATTATA
66 GCTATGTGATTATA
*
7209684 TGTGTAATGTGATATATGCTTTAAAGTGAATGTGA-TATATG
1 TGAGTAATGTGATATATGCTTTAAAGTGAATGTGATTATATG
7209725 CTTAAAAGTG
Statistics
Matches: 97, Mismatches: 19, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
78 89 0.92
79 7 0.07
80 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.22, T:0.46
Consensus pattern (79 bp):
TGAGTAATGTGATATATGCTTTAAAGTGAATGTGATTATATGAGTATTATGATATATACTTGAAT
GCTATGTGATTATA
Found at i:7211902 original size:3 final size:3
Alignment explanation
Indices: 7211894--7211920 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7211884 TGAGCTATAG
7211894 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
7211921 CATCACCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7213167 original size:18 final size:18
Alignment explanation
Indices: 7213144--7213182 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7213134 CTATTTTTAG
7213144 AAATTG-AATATACTATTT
1 AAATTGAAATATA-TATTT
7213162 AAATTGAAATATATATTT
1 AAATTGAAATATATATTT
7213180 AAA
1 AAA
7213183 AATGAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (18 bp):
AAATTGAAATATATATTT
Found at i:7213188 original size:19 final size:18
Alignment explanation
Indices: 7213150--7213198 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
7213140 TTAGAAATTG
*
7213150 AATATACTATTTAAATTGA
1 AATATA-TATTTAAAATGA
7213169 AATATATATTTAAAAATGA
1 AATATATATTT-AAAATGA
7213188 AA-ATAATATTT
1 AATAT-ATATTT
7213199 GAGTGATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 7 0.26
19 20 0.74
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (18 bp):
AATATATATTTAAAATGA
Found at i:7214879 original size:2 final size:2
Alignment explanation
Indices: 7214872--7214901 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7214862 GGTTAGGTAG
7214872 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7214902 CAGGGGAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7218182 original size:93 final size:93
Alignment explanation
Indices: 7218035--7218208 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
7218025 GCTTCTTGTG
* ** * *
7218035 TGAATGTTGATGATGAGAAGACTCCTGTTGCATCTCCAACAGGTTCATCTGCTGAAAGGAAGTTA
1 TGAATCTTGATGATGAGAAGAAGCCAGTTGCATCTCCAACAGGTTCATCAGCTGAAAGGAAGTTA
7218100 ACTCCTGTAGCTGGTGGTTCATCATGTA
66 ACTCCTGTAGCTGGTGGTTCATCATGTA
7218128 TGAATCTTGATGATG-GAATGAAGCCAGTTGCATCTCCAACAGGTTCATCAGCTGAAAGGAAGTT
1 TGAATCTTGATGATGAGAA-GAAGCCAGTTGCATCTCCAACAGGTTCATCAGCTGAAAGGAAGTT
7218192 AACTCCTGTAGCTGGTG
65 AACTCCTGTAGCTGGTG
7218209 AGGTTTTGTT
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 3 0.04
93 72 0.96
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (93 bp):
TGAATCTTGATGATGAGAAGAAGCCAGTTGCATCTCCAACAGGTTCATCAGCTGAAAGGAAGTTA
ACTCCTGTAGCTGGTGGTTCATCATGTA
Found at i:7234724 original size:28 final size:28
Alignment explanation
Indices: 7234693--7234751 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
7234683 TACTTAAGAG
*
7234693 TATCTTACGTGGAAAGTCCGCTAAGGAC
1 TATCGTACGTGGAAAGTCCGCTAAGGAC
* *
7234721 TATCGTATGTGGAATGTCCGCTAAGGAC
1 TATCGTACGTGGAAAGTCCGCTAAGGAC
7234749 TAT
1 TAT
7234752 TTGTTCTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (28 bp):
TATCGTACGTGGAAAGTCCGCTAAGGAC
Found at i:7234767 original size:28 final size:28
Alignment explanation
Indices: 7234702--7234769 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
7234692 GTATCTTACG
*
7234702 TGGAAAGTCCGCTAAGGACTATCGTATG
1 TGGAAAGTCCGCTAAGGACTATCGTATC
* *
7234730 TGGAATGTCCGCTAAGGACTATTTGT-TC
1 TGGAAAGTCCGCTAAGGACTA-TCGTATC
*
7234758 TGTAAAGTCCGC
1 TGGAAAGTCCGC
7234770 CAGGAGCTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 31 0.91
29 3 0.09
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (28 bp):
TGGAAAGTCCGCTAAGGACTATCGTATC
Found at i:7234956 original size:15 final size:15
Alignment explanation
Indices: 7234936--7234966 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7234926 GTTATGTAAG
7234936 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
7234951 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
7234966 T
1 T
7234967 ATGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:7236870 original size:21 final size:21
Alignment explanation
Indices: 7236846--7236886 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7236836 AAATCCCCCC
7236846 AAGAAAAAAACAAGAAAAATG
1 AAGAAAAAAACAAGAAAAATG
* **
7236867 AAGAAGAAAGGAAGAAAAAT
1 AAGAAAAAAACAAGAAAAAT
7236887 CCCAACAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (21 bp):
AAGAAAAAAACAAGAAAAATG
Found at i:7239760 original size:16 final size:16
Alignment explanation
Indices: 7239739--7239771 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7239729 TTCTAAATTT
7239739 ATAAAAATATATAAAA
1 ATAAAAATATATAAAA
7239755 ATAAAAATATATAAAA
1 ATAAAAATATATAAAA
7239771 A
1 A
7239772 AACCTATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
ATAAAAATATATAAAA
Found at i:7239844 original size:36 final size:36
Alignment explanation
Indices: 7239798--7239896 Score: 105
Period size: 36 Copynumber: 2.8 Consensus size: 36
7239788 GATAGCATAT
* *
7239798 AAAAATTTAT-AATATTATACTAAAT-TAACAAAAATA-
1 AAAAAATTATAAAT-TTATA-TAAATAT-ACAAAAAAAC
*
7239834 AAAAACTTATAAATTTATATAAATATACAAAAAAAC
1 AAAAAATTATAAATTTATATAAATATACAAAAAAAC
* *
7239870 AAAAAATTATAAATTCATAAAAATATA
1 AAAAAATTATAAATTTATATAAATATA
7239897 AGTATATAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
35 13 0.24
36 39 0.71
37 3 0.05
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (36 bp):
AAAAAATTATAAATTTATATAAATATACAAAAAAAC
Found at i:7243027 original size:16 final size:16
Alignment explanation
Indices: 7243006--7243039 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7242996 AAAAAGATAG
7243006 TATCTTTAATAAAATT
1 TATCTTTAATAAAATT
7243022 TATCTTTAATAAAATT
1 TATCTTTAATAAAATT
7243038 TA
1 TA
7243040 CAAATGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
TATCTTTAATAAAATT
Found at i:7243251 original size:19 final size:19
Alignment explanation
Indices: 7243227--7243265 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7243217 GCCTTTATGG
7243227 TTGTTATAAATAAA-AAAAA
1 TTGTTATAAA-AAATAAAAA
7243246 TTGTTATAAAAAATAAAAA
1 TTGTTATAAAAAATAAAAA
7243265 T
1 T
7243266 AAAATGTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (19 bp):
TTGTTATAAAAAATAAAAA
Found at i:7245869 original size:3 final size:3
Alignment explanation
Indices: 7245861--7245949 Score: 178
Period size: 3 Copynumber: 29.7 Consensus size: 3
7245851 CAAAGTGCAA
7245861 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
7245909 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
7245950 AATTAACAGT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 86 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7249222 original size:16 final size:18
Alignment explanation
Indices: 7249185--7249222 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
7249175 AATGACTTAG
7249185 AAATGAAATTATGTATTTC
1 AAATGAAATTA-GTATTTC
7249204 AAATGAAATTA-TA-TTC
1 AAATGAAATTAGTATTTC
7249220 AAA
1 AAA
7249223 AATAGAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 2 0.11
19 11 0.58
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (18 bp):
AAATGAAATTAGTATTTC
Found at i:7252404 original size:27 final size:27
Alignment explanation
Indices: 7252348--7252404 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
7252338 GTCTCGACGA
* *
7252348 ACTACCCCATGTTTACCGTTTCGGTAG
1 ACTACCCCATGTTTACCATTTCGATAG
** *
7252375 ACTACCCTGTGTTTACCATTTCGATCG
1 ACTACCCCATGTTTACCATTTCGATAG
7252402 ACT
1 ACT
7252405 TTATTGGTCG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (27 bp):
ACTACCCCATGTTTACCATTTCGATAG
Found at i:7255930 original size:15 final size:16
Alignment explanation
Indices: 7255899--7255929 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7255889 AAATTACATT
7255899 TTAAAAAAAATTAAAA
1 TTAAAAAAAATTAAAA
*
7255915 TTAAAAAATATTAAA
1 TTAAAAAAAATTAAA
7255930 TCCTGACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
TTAAAAAAAATTAAAA
Found at i:7256045 original size:22 final size:22
Alignment explanation
Indices: 7256019--7256076 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7256009 ATGATTTAAC
*
7256019 AAAAAATATAAATTCAAAGATT
1 AAAAAATATAAATTCAAAGACT
* *
7256041 AAAAAAAATTAAA-TGAAAGACT
1 AAAAAATA-TAAATTCAAAGACT
*
7256063 AAAATATATAAATT
1 AAAAAATATAAATT
7256077 TGGAAGACCA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
21 4 0.14
22 21 0.72
23 4 0.14
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (22 bp):
AAAAAATATAAATTCAAAGACT
Found at i:7258388 original size:18 final size:18
Alignment explanation
Indices: 7258365--7258399 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7258355 TATTTGATTT
*
7258365 TTTAAAATTTAATTTTTA
1 TTTAAAATTAAATTTTTA
*
7258383 TTTAAAGTTAAATTTTT
1 TTTAAAATTAAATTTTT
7258400 TAACAATGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
TTTAAAATTAAATTTTTA
Found at i:7258476 original size:16 final size:16
Alignment explanation
Indices: 7258455--7258485 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7258445 ATTTTTTAAC
7258455 ATATTAAAAAATATTT
1 ATATTAAAAAATATTT
7258471 ATATTAAAAAATATT
1 ATATTAAAAAATATT
7258486 ACCATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATTAAAAAATATTT
Found at i:7261767 original size:15 final size:14
Alignment explanation
Indices: 7261747--7261779 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
7261737 TGTTTTGATC
7261747 AAAAGAAATGAAATG
1 AAAAGAAATGAAA-G
7261762 AAAAGAAATGAAAG
1 AAAAGAAATGAAAG
7261776 AAAA
1 AAAA
7261780 AAGAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (14 bp):
AAAAGAAATGAAAG
Found at i:7261780 original size:15 final size:16
Alignment explanation
Indices: 7261747--7261785 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
7261737 TGTTTTGATC
7261747 AAAAGAAATGAAATG-
1 AAAAGAAATGAAATGA
7261762 AAAAGAAATGAAA-GAA
1 AAAAGAAATGAAATG-A
7261778 AAAAGAAA
1 AAAAGAAA
7261786 AAGAGAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.05
15 13 0.59
16 8 0.36
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (16 bp):
AAAAGAAATGAAATGA
Found at i:7267546 original size:89 final size:89
Alignment explanation
Indices: 7267362--7267814 Score: 493
Period size: 89 Copynumber: 5.1 Consensus size: 89
7267352 AAGACTTATA
** * * *
7267362 TCTTCGATCTACTTCACCACCCGTATGGGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACCA
1 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCT-ATTATCTTTGATCTACTTCA-CG
* * *
7267426 CCAGT--ATGGAAAGATAAGATCT-GTA
64 CCAATACAT-G-AAGATAAGATCTATTT
* * * * * * * * * ** *
7267451 TATTCGATCCACTTCGCTACCGATATAGGAAGGCAGGACCTATTATCTTTGATCTTTTTCACGCA
1 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACGCC
**
7267516 AATACATGAAGACGAGATCTATTT
66 AATACATGAAGATAAGATCTATTT
* * * * *
7267540 CCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTT-TCTTTGATCTACTTCACGCC
1 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACGCC
* * *
7267604 AGTACATGAAGATAAGATTTGTTT
66 AATACATGAAGATAAGATCTATTT
* *
7267628 TCTTCGATCAACTTCACCACCAATATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACGCT
1 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACGCC
*
7267693 AATACATGAAGATAAGATCTTTTT
66 AATACATGAAGATAAGATCTATTT
*
7267717 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
1 TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACGCC
* * **
7267782 AGTACATGAAGAAAAGATCTGCTT
66 AATACATGAAGATAAGATCTATTT
7267806 TCTTCGATC
1 TCTTCGATC
7267815 GATTCCACTA
Statistics
Matches: 299, Mismatches: 60, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
88 90 0.30
89 207 0.69
90 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (89 bp):
TCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTATTATCTTTGATCTACTTCACGCC
AATACATGAAGATAAGATCTATTT
Found at i:7267630 original size:44 final size:44
Alignment explanation
Indices: 7267508--7267814 Score: 265
Period size: 44 Copynumber: 6.9 Consensus size: 44
7267498 TTTGATCTTT
* * * *
7267508 TTCACGCAAATACATGAAGACGAGATCTATTTCCTTCGATCTAC
1 TTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTAC
* * * *** * *
7267552 TCCACCACCAGTATGGGGAGACAAGATCTG-TTTCTTTGATCTAC
1 TTCA-CGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTAC
* * * *
7267596 TTCACGCCAGTACATGAAGATAAGATTTGTTTTCTTCGATCAAC
1 TTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTAC
* *** * * *
7267640 TTCACCACCAATATGGGAAGACAAGATCTATTATCTTTGATCTAC
1 TTCA-CGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTAC
* * *
7267685 TTCACGCTAATACATGAAGATAAGATCTTTTTTCTTCGATCTAC
1 TTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTAC
* *** * *
7267729 TTCACCACCAATATGGGAAGACAAGATCTGTTATCTTTGATCTAC
1 TTCA-CGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTAC
* * *
7267774 TTCACGCCAGTACATGAAGAAAAGATCTGCTTTCTTCGATC
1 TTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATC
7267815 GATTCCACTA
Statistics
Matches: 199, Mismatches: 60, Indels: 8
0.75 0.22 0.03
Matches are distributed among these distances:
43 18 0.09
44 97 0.49
45 84 0.42
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (44 bp):
TTCACGCCAATACATGAAGACAAGATCTGTTTTCTTCGATCTAC
Found at i:7267691 original size:177 final size:176
Alignment explanation
Indices: 7267363--7267814 Score: 602
Period size: 177 Copynumber: 2.5 Consensus size: 176
7267353 AGACTTATAT
* * *
7267363 CTTCGATCTACTTCACCACCCGTATGGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACC
1 CTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTG-TTTCTTTGATCTACTTCA-CGCC
* * * * * * * *
7267428 AGT--ATGGAAAGATAAGATCTGTATATTCGATCCACTTCGCTACCGATATAGGAAGGCAGGACC
64 AGTACAT-G-AAGATAAGATCTGTTTCTTCGATCAACTTCACCACCAATATAGGAAGACAAGACC
** *
7267491 TATTATCTTTGATCTTTTTCACGCAAATACATGAAGACGAGATCTATTTC
127 TATTATCTTTGATCTACTTCACGCAAATACATGAAGACAAGATCTATTTC
* *
7267541 CTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTTTCTTTGATCTACTTCACGCCAG
1 CTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTTCTTTGATCTACTTCACGCCAG
* * *
7267606 TACATGAAGATAAGATTTGTTTTCTTCGATCAACTTCACCACCAATATGGGAAGACAAGATCTAT
66 TACATGAAGATAAGATCTG-TTTCTTCGATCAACTTCACCACCAATATAGGAAGACAAGACCTAT
* * * *
7267671 TATCTTTGATCTACTTCACGCTAATACATGAAGATAAGATCTTTTTT
130 TATCTTTGATCTACTTCACGCAAATACATGAAGACAAGATCTATTTC
*
7267718 CTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCA
1 CTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTT-TCTTTGATCTACTTCACGCCA
*
7267783 GTACATGAAGAAAAGATCTGCTTTCTTCGATC
65 GTACATGAAGATAAGATCTG-TTTCTTCGATC
7267815 GATTCCACTA
Statistics
Matches: 241, Mismatches: 29, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
176 18 0.07
177 133 0.55
178 90 0.37
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (176 bp):
CTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTTTCTTTGATCTACTTCACGCCAG
TACATGAAGATAAGATCTGTTTCTTCGATCAACTTCACCACCAATATAGGAAGACAAGACCTATT
ATCTTTGATCTACTTCACGCAAATACATGAAGACAAGATCTATTTC
Found at i:7267902 original size:177 final size:177
Alignment explanation
Indices: 7267541--7267910 Score: 381
Period size: 177 Copynumber: 2.1 Consensus size: 177
7267531 GATCTATTTC
* *
7267541 CTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTTTCTTTGATCTACTTCACGCCAG
1 CTTCGATCTACTCCACCACCAATATGGGAAGACAAGATCTGTTTCTTTGATCTACTTCACGCCAG
* * * * *
7267606 TACATGAAGATAAGATTTGTTTTCTTCGATCAACTTCACCACCAATATGGGAAGACAAGATCTAT
66 TACATGAAGAAAAGATCTGCTTTCTTCGATCAACTTCACCACCAATACGGGAAGACAAGATCTAC
* ** * * * * *****
7267671 TATCTTTGATCTACTTCACGCTAATACATGAAGATAAGATCTTTTTT
131 TAGCTTCAATATACTCCACGCTAATACAGGAAGATAAAATCCGCCAT
*
7267718 CTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCA
1 CTTCGATCTACTCCACCACCAATATGGGAAGACAAGATCTGTT-TCTTTGATCTACTTCACGCCA
* * * * * *
7267783 GTACATGAAGAAAAGATCTGCTTTCTTCGATCGA-TTCCACTACCGA-CCGGGGAGA-TAGAAT-
65 GTACATGAAGAAAAGATCTGCTTTCTTCGATCAACTT-CACCACCAATACGGGAAGACAAG-ATC
* * * *
7267844 TACTGGCTTCAATATACTCCACTGC-AACTTCAGGGAGGTAAAATCCGCCAT
128 TACTAGCTTCAATATACTCCAC-GCTAA-TACAGGAAGATAAAATCCGCCAT
*
7267895 CTTCGATCTGCTCCAC
1 CTTCGATCTACTCCAC
7267911 TACTGCTTGG
Statistics
Matches: 156, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
176 19 0.12
177 79 0.51
178 58 0.37
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (177 bp):
CTTCGATCTACTCCACCACCAATATGGGAAGACAAGATCTGTTTCTTTGATCTACTTCACGCCAG
TACATGAAGAAAAGATCTGCTTTCTTCGATCAACTTCACCACCAATACGGGAAGACAAGATCTAC
TAGCTTCAATATACTCCACGCTAATACAGGAAGATAAAATCCGCCAT
Found at i:7267968 original size:44 final size:44
Alignment explanation
Indices: 7267920--7269025 Score: 166
Period size: 44 Copynumber: 25.1 Consensus size: 44
7267910 CTACTGCTTG
* *
7267920 GGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCCA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * **
7267964 GGGA-G-ATAGA-AT-TACTGGCTTCAATGTACTCCACTGTAACCTCA
1 GGGAGGCA-AGATCTGTAAT--CTTCAATCTACTCCACTGTTGCC-CA
* * * ** * * ** **
7268008 GGGAGGTAAAACCTGCCATCTTCGATCTGCTCCACTACTGCTTA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
*
7268052 GGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * * **
7268096 AGGA-G-ATAGA-AT-TACTGGCTTCAATGTACTCCACTGTAACCTCA
1 GGGAGGCA-AGATCTGTAAT--CTTCAATCTACTCCACTGTTGCC-CA
* * * ** * * * * * **
7268140 GGGAGGTAAAATCCGCCATCTTCGATCTGCTTCGCTGTCGATGCA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTG-CCCA
* * * * * *
7268185 GGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTACCTA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * * * * **
7268229 GGGAAG-TAGA-AT-TACTGGCTTTAATGTACTCCACTGTAACCACA
1 GGGAGGCAAGATCTGTAAT--CTTCAATCTACTCCACTGTTGCC-CA
* * * ** ** * ** **
7268273 AGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * *
7268317 GGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * *** *
7268361 GGGA-G-ATAGA-AT-TACTGGCTTCAATATACTCCACTGCAACTTCA
1 GGGAGGCA-AGATCTGTAAT--CTTCAATCTACTCCACTGTTGC-CCA
* * * ** * ** **
7268405 GGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCTTA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* **
7268449 GGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTTCCA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * * **
7268493 GAGA-G-ATAGA-AT-TACTGGCTTCAATGTACTCCACTGTAACCTCA
1 GGGAGGCA-AGATCTGTAAT--CTTCAATCTACTCCACTGTTGCC-CA
* * * ** * * ** **
7268537 GGGAGGTAAAACCTGCCATCTTCGATCTGCTCCACTACTGCTTA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* *
7268581 GGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGCTCA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * **
7268625 GGGA-G-ATAGA-AT-TACTGGCTTCAATGTACTCCACTGTAACCTCA
1 GGGAGGCA-AGATCTGTAAT--CTTCAATCTACTCCACTGTTGCC-CA
* * * ** * * * * * * **
7268669 GGGAGGTAAAATCCGCCATCTTCGATCTGCTTCGCTATCGATACA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTG-CCCA
* * * *
7268714 GGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* * * * * *
7268758 GGGAAG-TAGA-AT-TACTGGCTTCAATGTACTCCACTGTAGCCACA
1 GGGAGGCAAGATCTGTAAT--CTTCAATCTACTCCACTGTTGCC-CA
* * * * ** * ** * **
7268802 AGGAGGTAAAATCT-TCTATCTTTGATCTGCTCCACTACTACTTA
1 GGGAGGCAAGATCTGT-AATCTTCAATCTACTCCACTGTTGCCCA
* * * *
7268846 GGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
* ** * * * **
7268890 GGGAGATGGAATTTCTG---GCTTTAATATACTCCACTGTAACCACA
1 GGGAG--GCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCC-CA
* * ** ** * ** **
7268934 GGGAGGTAAAATCTGCCATCTTTGATCTGCTCCACTACTGCTTA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
** *
7268978 GGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGTTGCCCA
1 GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
7269022 GGGA
1 GGGA
7269026 AGTAGAATTA
Statistics
Matches: 704, Mismatches: 297, Indels: 122
0.63 0.26 0.11
Matches are distributed among these distances:
41 18 0.03
42 19 0.03
43 171 0.24
44 280 0.40
45 193 0.27
46 16 0.02
47 7 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (44 bp):
GGGAGGCAAGATCTGTAATCTTCAATCTACTCCACTGTTGCCCA
Found at i:7267998 original size:132 final size:132
Alignment explanation
Indices: 7267832--7269096 Score: 1826
Period size: 132 Copynumber: 9.6 Consensus size: 132
7267822 CTACCGACCG
* * *
7267832 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
* * *
7267897 TCGATCTGCTCCACTACTGCTTGGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTCC
66 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
7267962 CA
131 CA
7267964 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAA-CCTGCCATC
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC-GCCATC
*
7268028 TTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGC
65 TTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGC
7268093 CCA
130 CCA
*
7268096 AGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
* * * * *
7268161 TCGATCTGCTTCGCTGTCGATGC--AGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCT
66 TCGATCTGCTCCACT-AC--TGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTT
* *
7268224 ACCTA
128 GCCCA
* * * *
7268229 GGGA-AGTAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAAGGAGGTAAAATCTGCCATC
1 GGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATC
* * *
7268293 TTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGC
65 TTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGC
7268358 CCA
130 CCA
* * *
7268361 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
* * **
7268426 TCGATCTACTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTTC
66 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
7268491 CA
131 CA
*
7268493 GAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAA-CCTGCCATC
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC-GCCATC
*
7268557 TTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGC
65 TTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGC
*
7268622 TCA
130 CCA
7268625 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
* * * * * *
7268690 TCGATCTGCTTCGCTA-TCGATACAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTG
66 TCGATCTGCTCCACTACT-GCT-TAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTG
7268754 CCCA
129 CCCA
* * * ** *
7268758 GGGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGTAGCCACAAGGAGGTAAAATCTTCTATC
1 GGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATC
* * * *
7268822 TTTGATCTGCTCCACTACTACTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGC
65 TTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGC
7268887 CCA
130 CCA
* * * * * *
7268890 GGGAGATGGAATTTCTGGCTTTAATATACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
* ** *
7268955 TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGTTGCC
66 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
7269020 CA
131 CA
* * *
7269022 GGGA-AGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATC
1 GGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATC
*
7269086 TTTGATCTGCT
65 TTCGATCTGCT
7269097 TCGCTGTCTA
Statistics
Matches: 1027, Mismatches: 89, Indels: 34
0.89 0.08 0.03
Matches are distributed among these distances:
130 3 0.00
131 6 0.01
132 785 0.76
133 229 0.22
134 1 0.00
135 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (132 bp):
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGCC
CA
Found at i:7268763 original size:529 final size:529
Alignment explanation
Indices: 7267832--7269096 Score: 2226
Period size: 529 Copynumber: 2.4 Consensus size: 529
7267822 CTACCGACCG
7267832 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCT
*
7267897 TCGATCTGCTCCACTACTGCTTGGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTCC
66 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTCC
7267962 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCTGCCAT
131 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCTGCCAT
7268027 CTTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTG
196 CTTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTG
7268092 CCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCC
261 CCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCC
* *
7268157 ATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTG
326 ATCTTCGATCTGCTTCGCTATCGATACAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTG
* *
7268222 CTACCTAGGGAAGTAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAAGGAGGTAAAATCT
391 CTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCT
*
7268287 GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCAC
456 GCCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCAC
7268352 TGCTGCCCA
521 TGCTGCCCA
7268361 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCT
* *
7268426 TCGATCTACTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTTC
66 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTCC
*
7268491 CAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCTGCCAT
131 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCTGCCAT
7268556 CTTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTG
196 CTTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTG
* *
7268621 CTCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCC
261 CCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCC
7268686 ATCTTCGATCTGCTTCGCTATCGATACAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTG
326 ATCTTCGATCTGCTTCGCTATCGATACAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTG
* *
7268751 CTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAGCCACAAGGAGGTAAAATCT
391 CTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCT
* *
7268816 TCTATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCAC
456 GCCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCAC
7268881 TGCTGCCCA
521 TGCTGCCCA
* * * * ** *
7268890 GGGAGATGGAATTTCTGGCTTTAATATACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCT
* ** * * *
7268955 TTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGTTGCC
66 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTCC
* * *
7269020 CAGGGA-AGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCA
131 CAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCTGCCA
*
7269084 TCTTTGATCTGCT
195 TCTTCGATCTGCT
7269097 TCGCTGTCTA
Statistics
Matches: 700, Mismatches: 35, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
528 1 0.00
529 699 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (529 bp):
GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCT
TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTCC
CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCTGCCAT
CTTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTG
CCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCC
ATCTTCGATCTGCTTCGCTATCGATACAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTG
CTACCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCT
GCCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCAC
TGCTGCCCA
Found at i:7269101 original size:397 final size:396
Alignment explanation
Indices: 7267838--7269096 Score: 1835
Period size: 397 Copynumber: 3.2 Consensus size: 396
7267828 ACCGGGGAGA
* * **
7267838 TAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* ** * * * *
7267903 TGCTCCACTACTGCTTGGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTCCCAGGGA
66 TGCTCCACTACTGATCAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
*
7267968 GATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCTGCCATCTTCGA
131 GATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGA
*
7268033 TCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCAAG
196 TCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCAGG
*
7268098 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTC
261 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTC
* * * * * *
7268163 GATCTGCTTCGCTGTCGATGC--AGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTAC
326 GATCTGCTCCACT-AC--TGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGC
*
7268226 CTAGGGAAG
388 CCAGGGAAG
* * * *
7268235 TAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAAGGAGGTAAAATCTGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
7268300 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTCCACTACTGATCAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
* * * *
7268365 GATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGA
131 GATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGA
* ** *
7268430 TCTACTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTTTCCAGA
196 TCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCAGG
*
7268495 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCTGCCATCTTC
261 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTC
* *
7268560 GATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGCTCA
326 GATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCA
7268625 GGG-AG
391 GGGAAG
*
7268630 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* *
7268695 CTGCTTCGCTA-TCGATACAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
65 CTGCTCCACTACT-GAT-CAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
* * * * *
7268759 GGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGTAGCCACAAGGAGGTAAAATCTTCTATCT
128 GGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
* * * * *
7268823 TTGATCTGCTCCACTACTACTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
192 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGCC
* * * * *
7268888 CAGGGAGATGGAATTTCTGGCTTTAATATACTCCACTGTAACCACAGGGAGGTAAAATCTGCCAT
257 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
* ** *
7268953 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTGTTG
322 CTTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTG
7269018 CCCAGGGAAG
387 CCCAGGGAAG
* * *
7269028 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
7269093 TGCT
66 TGCT
7269097 TCGCTGTCTA
Statistics
Matches: 776, Mismatches: 79, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
394 3 0.00
395 3 0.00
396 114 0.15
397 654 0.84
398 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (396 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
TGCTCCACTACTGATCAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
GATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGA
TCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCAGG
GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTC
GATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCA
GGGAAG
Found at i:7269141 original size:45 final size:45
Alignment explanation
Indices: 7269064--7269150 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 45
7269054 ACTGTAACCA
* ** * * *
7269064 CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGTCTATG
1 CAGGAAGGTAAAATCTGCCATCTTCAACCTGCTCCACTGTCTATG
* *
7269109 CAGGAAGGTAAGATCTGCTATCTTCAACCTGCTCCACTGTCT
1 CAGGAAGGTAAAATCTGCCATCTTCAACCTGCTCCACTGTCT
7269151 CCGAGGGAGG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (45 bp):
CAGGAAGGTAAAATCTGCCATCTTCAACCTGCTCCACTGTCTATG
Found at i:7270457 original size:8 final size:7
Alignment explanation
Indices: 7270420--7270454 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
7270410 TTAGCCTCTC
7270420 CATTTTT
1 CATTTTT
7270427 CATTTTT
1 CATTTTT
7270434 CA-TTTT
1 CATTTTT
7270440 CATCTTTT
1 CAT-TTTT
7270448 CATTTTT
1 CATTTTT
7270455 TCACATCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 6 0.23
7 13 0.50
8 7 0.27
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:7271391 original size:18 final size:17
Alignment explanation
Indices: 7271368--7271407 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
7271358 TAATTTGGCA
7271368 GAAAAAATCTGAAAGAAT
1 GAAAAAATCTG-AAGAAT
*
7271386 GAAAAAAATGTGAAGAAT
1 G-AAAAAATCTGAAGAAT
7271404 GAAA
1 GAAA
7271408 GAACATTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 3 0.15
18 8 0.40
19 9 0.45
ACGTcount: A:0.62, C:0.03, G:0.20, T:0.15
Consensus pattern (17 bp):
GAAAAAATCTGAAGAAT
Found at i:7271393 original size:19 final size:18
Alignment explanation
Indices: 7271369--7271407 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
7271359 AATTTGGCAG
7271369 AAAAAATCTGAAAGAATGA
1 AAAAAATCTG-AAGAATGA
*
7271388 AAAAAATGTGAAGAATGA
1 AAAAAATCTGAAGAATGA
7271406 AA
1 AA
7271408 GAACATTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.64, C:0.03, G:0.18, T:0.15
Consensus pattern (18 bp):
AAAAAATCTGAAGAATGA
Found at i:7273324 original size:19 final size:19
Alignment explanation
Indices: 7273300--7273345 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7273290 AATGGTGTCT
* *
7273300 AATGCATATG-ATGTAATG
1 AATGCAAATGCATGAAATG
7273318 AAATGCAAATGCATGAAATG
1 -AATGCAAATGCATGAAATG
7273338 AATGCAAA
1 AATGCAAA
7273346 AAGAGACGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.48, C:0.09, G:0.20, T:0.24
Consensus pattern (19 bp):
AATGCAAATGCATGAAATG
Found at i:7273809 original size:16 final size:16
Alignment explanation
Indices: 7273784--7273814 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7273774 TTCTATAATG
7273784 AAATGCCATGCAGTCT
1 AAATGCCATGCAGTCT
*
7273800 AAATGTCATGCAGTC
1 AAATGCCATGCAGTC
7273815 AAAGTGAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (16 bp):
AAATGCCATGCAGTCT
Found at i:7274178 original size:14 final size:13
Alignment explanation
Indices: 7274159--7274188 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
7274149 CTTAAAGGGT
7274159 AAAATGCAAAATGC
1 AAAATGC-AAATGC
7274173 AAAATGCAAATGC
1 AAAATGCAAATGC
7274186 AAA
1 AAA
7274189 GTTGCCAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.60, C:0.13, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAATGCAAATGC
Found at i:7274185 original size:6 final size:7
Alignment explanation
Indices: 7274159--7274188 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
7274149 CTTAAAGGGT
7274159 AAAATGC
1 AAAATGC
7274166 AAAATGC
1 AAAATGC
7274173 AAAATGC
1 AAAATGC
7274180 -AAATGC
1 AAAATGC
7274186 AAA
1 AAA
7274189 GTTGCCAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.60, C:0.13, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAATGC
Found at i:7275449 original size:3 final size:3
Alignment explanation
Indices: 7275438--7275502 Score: 53
Period size: 3 Copynumber: 21.0 Consensus size: 3
7275428 TAATAATTTC
* * *
7275438 AAT ATT AAT AAT AAT AAT AAAT AAT AAT GAT AAAC AAGT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT AA-T AAT AAT AAT
7275485 AAT -AT AAT AAT AAAT AAT
1 AAT AAT AAT AAT -AAT AAT
7275503 TAAATAGTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
2 4 0.08
3 37 0.74
4 9 0.18
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Done.