Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 26 of 214
Found at i:7275462 original size:13 final size:13
Alignment explanation
Indices: 7275444--7275502 Score: 75
Period size: 13 Copynumber: 4.5 Consensus size: 13
7275434 TTTCAATATT
7275444 AATAATAATAATA
1 AATAATAATAATA
*
7275457 AATAATAATGATA
1 AATAATAATAATA
*
7275470 AACAAGTAATAATA
1 AATAA-TAATAATA
7275484 TAAT-ATAATAATA
1 -AATAATAATAATA
7275497 AATAAT
1 AATAAT
7275503 TAAATAGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
12 3 0.08
13 26 0.67
14 8 0.21
15 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:7279720 original size:24 final size:25
Alignment explanation
Indices: 7279617--7279756 Score: 71
Period size: 24 Copynumber: 5.7 Consensus size: 25
7279607 GCTGTATAAT
*
7279617 GGAAAGCTCTTGAGAGCC-AATTATC
1 GGAAAGCTCATGAGAGCCTAA-TATC
*
7279642 -GAGAAGCTCAT-ACGAGTCATAA-A-C
1 GGA-AAGCTCATGA-GAG-CCTAATATC
* * * *
7279666 GGGAAGCTCAAGAGGGCCAAAT-TC
1 GGAAAGCTCATGAGAGCCTAATATC
*
7279690 -GATAAGCTCATGCGAGCC-AATATC
1 GGA-AAGCTCATGAGAGCCTAATATC
* *
7279714 GGAAAGCTCGTGAGAGCCTATTATC
1 GGAAAGCTCATGAGAGCCTAATATC
* * *
7279739 GGGACGCTCATAAGAGCC
1 GGAAAGCTCATGAGAGCC
7279757 ATGGTGTGTC
Statistics
Matches: 85, Mismatches: 18, Indels: 24
0.67 0.14 0.19
Matches are distributed among these distances:
23 7 0.08
24 41 0.48
25 34 0.40
26 1 0.01
27 2 0.02
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (25 bp):
GGAAAGCTCATGAGAGCCTAATATC
Found at i:7281043 original size:16 final size:15
Alignment explanation
Indices: 7281017--7281046 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7281007 AGTGATAGAT
7281017 GACAAAAAGTAAAAG
1 GACAAAAAGTAAAAG
7281032 GACAATAAAGTAAAA
1 GACAA-AAAGTAAAA
7281047 ATTAGTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.67, C:0.07, G:0.17, T:0.10
Consensus pattern (15 bp):
GACAAAAAGTAAAAG
Found at i:7281729 original size:47 final size:47
Alignment explanation
Indices: 7281654--7281836 Score: 260
Period size: 47 Copynumber: 3.9 Consensus size: 47
7281644 GGGGTGTGAC
* * * * *
7281654 AATTAAATAATTTAATCAT-GAACGTGATAAATGGCAAAATAAAAATA
1 AATTAAATGATATAATCATCG-ACATGATAAGTGGCATAATAAAAATA
7281701 AATTAAATGATATAATCATCGACATGATAAGTGGCATAATAAAAATA
1 AATTAAATGATATAATCATCGACATGATAAGTGGCATAATAAAAATA
* ** *
7281748 AATTAAACGATATAATCATCGATGTGATAAGTGGCATGATAAAAATA
1 AATTAAATGATATAATCATCGACATGATAAGTGGCATAATAAAAATA
*
7281795 AATTAAATGATATAATCATAGACATGATAAGTGGCATAATAA
1 AATTAAATGATATAATCATCGACATGATAAGTGGCATAATAA
7281837 CTACTAGAAG
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
47 120 0.99
48 1 0.01
ACGTcount: A:0.51, C:0.08, G:0.14, T:0.28
Consensus pattern (47 bp):
AATTAAATGATATAATCATCGACATGATAAGTGGCATAATAAAAATA
Found at i:7283168 original size:18 final size:18
Alignment explanation
Indices: 7283145--7283184 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
7283135 TTATTTTTCG
7283145 TTATATCTTTGTACTATT
1 TTATATCTTTGTACTATT
7283163 TTATATCTTTGTACTATT
1 TTATATCTTTGTACTATT
7283181 TTAT
1 TTAT
7283185 GTCACTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62
Consensus pattern (18 bp):
TTATATCTTTGTACTATT
Found at i:7283888 original size:32 final size:32
Alignment explanation
Indices: 7283832--7283903 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
7283822 CTGTGTGTTA
* *
7283832 GGCCATGTGGGATACACATGCTGGACCTTTTG
1 GGCCATGTGGGACACACAGGCTGGACCTTTTG
* *
7283864 GGTCATGTGGGACACAC-GGACTGGACTTTTTG
1 GGCCATGTGGGACACACAGG-CTGGACCTTTTG
7283896 GGCCATGT
1 GGCCATGT
7283904 AGGCCACATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 1 0.03
32 33 0.97
ACGTcount: A:0.18, C:0.21, G:0.33, T:0.28
Consensus pattern (32 bp):
GGCCATGTGGGACACACAGGCTGGACCTTTTG
Found at i:7291721 original size:32 final size:32
Alignment explanation
Indices: 7291685--7291758 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
7291675 AATAAATACC
7291685 AAAAATTTATTTTAAAAATTAAAATAAAAATTA
1 AAAAATTTATTTTAAAAA-TAAAATAAAAATTA
** ** *
7291718 AAAAAAGTATTTTAAAAATAATTTAAAATTTA
1 AAAAATTTATTTTAAAAATAAAATAAAAATTA
*
7291750 AAAATTTTA
1 AAAAATTTA
7291759 AAAAAAGTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
32 17 0.52
33 16 0.48
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (32 bp):
AAAAATTTATTTTAAAAATAAAATAAAAATTA
Found at i:7291763 original size:11 final size:11
Alignment explanation
Indices: 7291749--7291838 Score: 73
Period size: 11 Copynumber: 8.2 Consensus size: 11
7291739 TTTAAAATTT
7291749 AAAAATTTTAAA
1 AAAAATTTT-AA
7291761 AAAAGTATTTTAA
1 AAAA--ATTTTAA
7291774 AAAAATTTTAA
1 AAAAATTTTAA
7291785 AAAAATTTT--
1 AAAAATTTTAA
7291794 -AAAA--TTAA
1 AAAAATTTTAA
*
7291802 AAAAATTTAAA
1 AAAAATTTTAA
7291813 AAAAGTATTTTAA
1 AAAA--ATTTTAA
**
7291826 AAGTATTTTAA
1 AAAAATTTTAA
7291837 AA
1 AA
7291839 TTAAAAAAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
6 2 0.03
8 4 0.06
9 4 0.06
11 32 0.49
12 4 0.06
13 14 0.22
14 5 0.08
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
AAAAATTTTAA
Found at i:7291796 original size:52 final size:52
Alignment explanation
Indices: 7291726--7291838 Score: 174
Period size: 52 Copynumber: 2.2 Consensus size: 52
7291716 TAAAAAAAGT
* *
7291726 ATTTTAAAAATAATTTAAAATTTAAAAATTTTAAAAAAAGTATTTTAAAAAA
1 ATTTTAAAAATAATTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAAA
**
7291778 ATTTTAAAAA-AATTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAGT
1 ATTTTAAAAATAA-TTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAAA
7291830 ATTTTAAAA
1 ATTTTAAAA
7291839 TTAAAAAAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
51 2 0.04
52 54 0.96
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (52 bp):
ATTTTAAAAATAATTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAAA
Found at i:7291804 original size:41 final size:42
Alignment explanation
Indices: 7291711--7291847 Score: 144
Period size: 41 Copynumber: 3.3 Consensus size: 42
7291701 AATTAAAATA
*
7291711 AAAATTAAAAAAAGTATTTTAAAAATAA-TTT---AAAATTTA
1 AAAATTAAAAAAAGTATTTTAAAAA-AATTTTAAAAAAATTTT
7291750 AAAATTTTAAAAAAAGTATTTTAAAAAAATTTTAAAAAAATTTT
1 AAAA--TTAAAAAAAGTATTTTAAAAAAATTTTAAAAAAATTTT
* **
7291794 AAAATT-AAAAAA--ATTTAAAAAAAGTATTTTAAAAGTATTTT
1 AAAATTAAAAAAAGTATTTTAAAAAA--ATTTTAAAAAAATTTT
7291835 AAAATTAAAAAAA
1 AAAATTAAAAAAA
7291848 TTAAAATATT
Statistics
Matches: 85, Mismatches: 4, Indels: 15
0.82 0.04 0.14
Matches are distributed among these distances:
39 14 0.16
40 2 0.02
41 50 0.59
42 8 0.09
44 11 0.13
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (42 bp):
AAAATTAAAAAAAGTATTTTAAAAAAATTTTAAAAAAATTTT
Found at i:7291814 original size:17 final size:17
Alignment explanation
Indices: 7291781--7291814 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7291771 TAAAAAAATT
*
7291781 TTAAAAAAATTTTAAAA
1 TTAAAAAAATTTAAAAA
7291798 TTAAAAAAATTTAAAAA
1 TTAAAAAAATTTAAAAA
7291815 AAGTATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TTAAAAAAATTTAAAAA
Found at i:7293876 original size:59 final size:61
Alignment explanation
Indices: 7293810--7293926 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 61
7293800 ATCACTTTAA
* * * *
7293810 TATTAAATTAATATAATATTTA-T-CAAGATAAGTATTAGATTAAAATTCATATTAAATCT
1 TATTAAATTAATAGAATATTTACTACAAGATAAATATTAAATTAAAATTAATATTAAATCT
*
7293869 TATTAAATTAATAGAATATTTATCTACAAGATAAATATTAAATTAAATTTAATATTAA
1 TATTAAATTAATAGAATATTTA-CTACAAGATAAATATTAAATTAAAATTAATATTAA
7293927 GATAAGATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
61 1 0.02
62 28 0.56
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (61 bp):
TATTAAATTAATAGAATATTTACTACAAGATAAATATTAAATTAAAATTAATATTAAATCT
Found at i:7298920 original size:22 final size:21
Alignment explanation
Indices: 7298906--7298947 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
7298896 TAAACTTAAT
7298906 ATTAGTATAATTTAAATTATAA
1 ATTA-TATAATTTAAATTATAA
*
7298928 ATTATATTATTTAAAGTTAT
1 ATTATATAATTTAAA-TTAT
7298948 CATACATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (21 bp):
ATTATATAATTTAAATTATAA
Found at i:7301491 original size:126 final size:125
Alignment explanation
Indices: 7301265--7301522 Score: 365
Period size: 126 Copynumber: 2.1 Consensus size: 125
7301255 GTTTCTGGTT
** * * *
7301265 AAATAGTATAAAATCACTTCTACCAGGATGCTATCAGAGAAGAAATTGTGAACTCGTGCCCTCGT
1 AAATAGTATAAAATCACTGATACCAGGATGCTATCAGAGAAGAAATTGTGAAATCGCGCCCTCAT
* * *
7301330 GGACGCGATTTCGCTATAGTTGGTCATGTAAGAAATAATTTTTTTTTGACGTTTTATGAGC
66 GGACGCGATTTCGCTACAGTGGGTCATGTAAGAAATAATTATTTTTTGACG-TTTATGAGC
** *
7301391 AAATAGTATAAAATTGCTGATACGAGGATGCTAT-ATGAGAAGAAATTGTGAAATCGCGCCCTCA
1 AAATAGTATAAAATCACTGATACCAGGATGCTATCA-GAGAAGAAATTGTGAAATCGCGCCCTCA
* * *
7301455 TGGACGCGATTTCGCTACAGTGGGTCATGTAGGAAATAATTATTTTTTGATGTTTCTGAGC
65 TGGACGCGATTTCGCTACAGTGGGTCATGTAAGAAATAATTATTTTTTGACGTTTATGAGC
7301516 AAATAGT
1 AAATAGT
7301523 GTCAAATCGC
Statistics
Matches: 117, Mismatches: 14, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
125 16 0.14
126 101 0.86
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.32
Consensus pattern (125 bp):
AAATAGTATAAAATCACTGATACCAGGATGCTATCAGAGAAGAAATTGTGAAATCGCGCCCTCAT
GGACGCGATTTCGCTACAGTGGGTCATGTAAGAAATAATTATTTTTTGACGTTTATGAGC
Found at i:7304056 original size:14 final size:15
Alignment explanation
Indices: 7304039--7304071 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7304029 AATAATTATC
7304039 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
7304053 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
7304068 TAAA
1 TAAA
7304072 TTTTAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:7304209 original size:29 final size:29
Alignment explanation
Indices: 7304170--7304228 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
7304160 TTGAAAATAT
7304170 TAAAAATTTTAAAATTAT-TTTAAAAAAA
1 TAAAAATTTTAAAATTATCTTTAAAAAAA
*
7304198 TAAAAATATTTAAAATTTTCTTTAAAAAAA
1 TAAAAAT-TTTAAAATTATCTTTAAAAAAA
7304228 T
1 T
7304229 GAAATTGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 7 0.25
29 10 0.36
30 11 0.39
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (29 bp):
TAAAAATTTTAAAATTATCTTTAAAAAAA
Found at i:7304287 original size:22 final size:21
Alignment explanation
Indices: 7304262--7304312 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
7304252 TAATATGGAT
*
7304262 TTGAGAGATTTTTTGAAGGAAA
1 TTGAGAGA-TTTTGGAAGGAAA
*
7304284 TTGAGAGGATTTTGGAAGGAAT
1 TTGAGA-GATTTTGGAAGGAAA
7304306 TTGAGAG
1 TTGAGAG
7304313 TTTAAGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.88
23 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (21 bp):
TTGAGAGATTTTGGAAGGAAA
Found at i:7304335 original size:52 final size:52
Alignment explanation
Indices: 7304265--7304364 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
7304255 TATGGATTTG
* * * *
7304265 AGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAAGGAATTTGAGAGTTTA
1 AGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGAGAGTTTA
7304317 AGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGAGAG
1 AGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGAGAG
7304365 AATATTTGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.30
Consensus pattern (52 bp):
AGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAAATTGAGAGTTTA
Found at i:7304381 original size:24 final size:22
Alignment explanation
Indices: 7304317--7304372 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
7304307 TGAGAGTTTA
7304317 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTG
7304339 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTG
7304361 AGAGAATATTTG
1 AGAGAAT-TTTG
7304373 TTCGTGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 29 0.88
23 4 0.12
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.29
Consensus pattern (22 bp):
AGAGAATTTTGGAAGGAAATTG
Found at i:7306229 original size:13 final size:13
Alignment explanation
Indices: 7306200--7306263 Score: 51
Period size: 13 Copynumber: 4.9 Consensus size: 13
7306190 TTTAACATTG
*
7306200 CTTTTAATAAA-TG
1 CTTTTAA-AAAGTA
7306213 CTTTTAAAAAGTA
1 CTTTTAAAAAGTA
**
7306226 CTTTGGAAAAGTGA
1 CTTTTAAAAAGT-A
**
7306240 -TTTTGGAAAGTA
1 CTTTTAAAAAGTA
7306252 CTTTTAAAAAGT
1 CTTTTAAAAAGT
7306264 TTGGTTTAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
12 4 0.10
13 36 0.88
14 1 0.02
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (13 bp):
CTTTTAAAAAGTA
Found at i:7306475 original size:43 final size:44
Alignment explanation
Indices: 7306395--7306477 Score: 102
Period size: 44 Copynumber: 1.9 Consensus size: 44
7306385 TAATATTATG
*
7306395 ATATTTTAATAATACAAAAAATAATTTATTATAATTTTTTGTTA
1 ATATTTTAATAATACAAAAAATAATTTATAATAATTTTTTGTTA
7306439 ATATTTTAATATATGA-AAAATAA-AATTTA-AAT-ATTTTTT
1 ATATTTTAATA-AT-ACAAAA-AATAATTTATAATAATTTTTT
7306478 AAGCAATTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
43 7 0.20
44 13 0.37
45 12 0.34
46 3 0.09
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (44 bp):
ATATTTTAATAATACAAAAAATAATTTATAATAATTTTTTGTTA
Found at i:7307974 original size:21 final size:21
Alignment explanation
Indices: 7307948--7307989 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7307938 ATTTTCCCTT
*
7307948 TCTCCTTTCTCTTCTAAGCAA
1 TCTCCTCTCTCTTCTAAGCAA
7307969 TCTCCTCTCTCTTCTAAGCAA
1 TCTCCTCTCTCTTCTAAGCAA
7307990 ATTTTCTTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.36, G:0.05, T:0.40
Consensus pattern (21 bp):
TCTCCTCTCTCTTCTAAGCAA
Found at i:7308227 original size:15 final size:15
Alignment explanation
Indices: 7308207--7308236 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7308197 TCCAAATTGT
*
7308207 TTGTTGAAGCTTCCA
1 TTGTTGAAGATTCCA
7308222 TTGTTGAAGATTCCA
1 TTGTTGAAGATTCCA
7308237 GAAAATATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (15 bp):
TTGTTGAAGATTCCA
Found at i:7308549 original size:15 final size:13
Alignment explanation
Indices: 7308522--7308548 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7308512 TTCAGGTTAG
7308522 AAGTGAGAGATAT
1 AAGTGAGAGATAT
7308535 AAGTGAGAGATAT
1 AAGTGAGAGATAT
7308548 A
1 A
7308549 TGAATAATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.22
Consensus pattern (13 bp):
AAGTGAGAGATAT
Found at i:7311120 original size:22 final size:20
Alignment explanation
Indices: 7311080--7311128 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
7311070 CAATTTAAAA
7311080 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
* *
7311100 TATATAAATTTATTAATATA
1 TATAAAAATTTATTAATATG
*
7311120 TGTAAAAAT
1 TATAAAAAT
7311129 AACTTTTCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:7311241 original size:20 final size:20
Alignment explanation
Indices: 7311216--7311255 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7311206 AAATATTTTC
7311216 AGTAAATCATTTTTCAGAAA
1 AGTAAATCATTTTTCAGAAA
*
7311236 AGTAAATCATTTTTTAGAAA
1 AGTAAATCATTTTTCAGAAA
7311256 TCATTTTCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (20 bp):
AGTAAATCATTTTTCAGAAA
Found at i:7311381 original size:18 final size:20
Alignment explanation
Indices: 7311360--7311396 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
7311350 ATTATTTTTC
7311360 TTTAAAA-AATTAA-CTGTG
1 TTTAAAACAATTAAGCTGTG
7311378 TTTAAAACAATTAAGCTGT
1 TTTAAAACAATTAAGCTGT
7311397 ACACCTCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 6 0.35
20 4 0.24
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (20 bp):
TTTAAAACAATTAAGCTGTG
Found at i:7311660 original size:14 final size:14
Alignment explanation
Indices: 7311641--7311693 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
7311631 TTGGAAAGAT
7311641 TTATAAAAATAAAA
1 TTATAAAAATAAAA
* *
7311655 TTAT-AATATATAGA
1 TTATAAAAATA-AAA
*
7311669 TTATATAAAATAATA
1 TTATA-AAAATAAAA
7311684 TTATAAAAAT
1 TTATAAAAAT
7311694 TCTGTATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
13 5 0.16
14 15 0.47
15 7 0.22
16 5 0.16
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
TTATAAAAATAAAA
Found at i:7318356 original size:50 final size:50
Alignment explanation
Indices: 7318241--7318489 Score: 300
Period size: 50 Copynumber: 4.8 Consensus size: 50
7318231 GATAATAACA
* * ** *
7318241 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATCTCGG
* *
7318292 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7318342 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7318392 TGCCCATGCCATGTCCCAGACATGGTCTTACAGAGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7318447 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7318490 TTACCCGAAT
Statistics
Matches: 170, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
50 94 0.55
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 38 0.22
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7318430 original size:100 final size:104
Alignment explanation
Indices: 7318240--7318489 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 104
7318230 TGATAATAAC
** *
7318240 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCCATGCCATG
* * *
7318305 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGAGGACCTCTCAATCTTAAGG
* *
7318342 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGT
7318406 CCCAGACATGGTCTTACAGAGGACCTCTCATGATCTTAAGG
66 CCCAGACATGGTCTTACAGAGGACCTCTCA--ATCTTAAGG
* *
7318447 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7318490 TTACCCGAAT
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGAGGACCTCTCAATCTTAAGG
Found at i:7318605 original size:13 final size:13
Alignment explanation
Indices: 7318584--7318615 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
7318574 GCTTGGATCA
*
7318584 TCATCAAATAAAT
1 TCATAAAATAAAT
7318597 TCATAAAATAAAT
1 TCATAAAATAAAT
7318610 TCATAA
1 TCATAA
7318616 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7326206 original size:8 final size:8
Alignment explanation
Indices: 7326182--7326222 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
7326172 ATGCAATGCT
7326182 TATGCATG
1 TATGCATG
*
7326190 CATGCATG
1 TATGCATG
7326198 TATGCATG
1 TATGCATG
*
7326206 TATGTATG
1 TATGCATG
*
7326214 TATGTATG
1 TATGCATG
7326222 T
1 T
7326223 GTACAAACCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (8 bp):
TATGCATG
Found at i:7326218 original size:12 final size:12
Alignment explanation
Indices: 7326182--7326222 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
7326172 ATGCAATGCT
*
7326182 TATGCATGCATG
1 TATGTATGCATG
*
7326194 CATGTATGCATG
1 TATGTATGCATG
*
7326206 TATGTATGTATG
1 TATGTATGCATG
7326218 TATGT
1 TATGT
7326223 GTACAAACCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (12 bp):
TATGTATGCATG
Found at i:7333567 original size:107 final size:108
Alignment explanation
Indices: 7333380--7333595 Score: 407
Period size: 107 Copynumber: 2.0 Consensus size: 108
7333370 TGTTCCCTCG
*
7333380 CCATGAAACTGTTCAATTAAATGAGAGTAATTTTATTTTTTTGGAAGCATCAAATAAATTTGATT
1 CCATGAAACTATTCAATTAAATGAGAGTAATTTTATTTTTTTGGAAGCATCAAATAAATTTGATT
*
7333445 CCTGAAGGGTATGGAATGACGGGTTACATTTTGGGAACTCTAT
66 CCTAAAGGGTATGGAATGACGGGTTACATTTTGGGAACTCTAT
7333488 CCATGAAACTATTCAATTAAATGAGAGTAATTTTA-TTTTTTGGAAGCATCAAATAAATTTGATT
1 CCATGAAACTATTCAATTAAATGAGAGTAATTTTATTTTTTTGGAAGCATCAAATAAATTTGATT
7333552 CCTAAAGGGTATGGAATGACGGGTTACATTTTGGGAACTCTAT
66 CCTAAAGGGTATGGAATGACGGGTTACATTTTGGGAACTCTAT
7333595 C
1 C
7333596 TATTCCAGCA
Statistics
Matches: 106, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 72 0.68
108 34 0.32
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (108 bp):
CCATGAAACTATTCAATTAAATGAGAGTAATTTTATTTTTTTGGAAGCATCAAATAAATTTGATT
CCTAAAGGGTATGGAATGACGGGTTACATTTTGGGAACTCTAT
Found at i:7349904 original size:23 final size:23
Alignment explanation
Indices: 7349878--7349975 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
7349868 ATAAGTGCCA
7349878 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
7349901 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
7349924 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
7349946 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
7349969 CACTGAT
1 CACTGAT
7349976 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:7349943 original size:45 final size:45
Alignment explanation
Indices: 7349885--7349973 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
7349875 CCACACTGAT
* *
7349885 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
7349930 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
7349974 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:7351332 original size:26 final size:26
Alignment explanation
Indices: 7351303--7351391 Score: 99
Period size: 26 Copynumber: 3.4 Consensus size: 26
7351293 TCACACATTG
* *
7351303 GCTCAAAGCCTGCTAAATAACCATCA
1 GCTCAAGGCCTGCTAAATAACCAACA
*
7351329 GCTCAAGGCCTGCTAAATAA-CAACTG
1 GCTCAAGGCCTGCTAAATAACCAAC-A
* * *
7351355 GCTCGAGGCTTGCTAAATAACCACCA
1 GCTCAAGGCCTGCTAAATAACCAACA
*
7351381 GCTCAATGCCT
1 GCTCAAGGCCT
7351392 ATTTTTTCGA
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
25 3 0.06
26 45 0.88
27 3 0.06
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (26 bp):
GCTCAAGGCCTGCTAAATAACCAACA
Found at i:7356844 original size:19 final size:19
Alignment explanation
Indices: 7356809--7356848 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7356799 CACAAATTAA
7356809 AAAAATTAAAATCAACCATT
1 AAAAATTAAAA-CAACCATT
7356829 AAAAATCTAAAA-AACCATT
1 AAAAAT-TAAAACAACCATT
7356848 A
1 A
7356849 GTAAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 6 0.32
21 5 0.26
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAAATTAAAACAACCATT
Found at i:7356933 original size:25 final size:25
Alignment explanation
Indices: 7356900--7356970 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
7356890 CAATTTTATC
* *
7356900 AAAATTTGAAATTTTATTAAAAATA
1 AAAAATTGAAATTTCATTAAAAATA
7356925 AAAAATTGAAATTTCATTAAAAATA
1 AAAAATTGAAATTTCATTAAAAATA
7356950 AAAAATTGAAATTTCATTAAA
1 AAAAATTGAAATTTCATTAAA
7356971 CTACTAATAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (25 bp):
AAAAATTGAAATTTCATTAAAAATA
Found at i:7364042 original size:30 final size:30
Alignment explanation
Indices: 7364006--7364068 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
7363996 ACTTATTTTA
*
7364006 TTGTTAATTTTATTATTATTTTAAAGACGT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
* *
7364036 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
7364066 TTG
1 TTG
7364069 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:7374068 original size:27 final size:27
Alignment explanation
Indices: 7374028--7374081 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
7374018 CATTCCTTTC
7374028 CATAGATCGCCACAAAAGCTTCAATTT
1 CATAGATCGCCACAAAAGCTTCAATTT
* * * *
7374055 CATAGATTGTCACAAAAGTTTCCATTT
1 CATAGATCGCCACAAAAGCTTCAATTT
7374082 TTCCTGTGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.31
Consensus pattern (27 bp):
CATAGATCGCCACAAAAGCTTCAATTT
Found at i:7375647 original size:27 final size:27
Alignment explanation
Indices: 7375577--7375666 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
7375567 GCTGGGATAA
* * *
7375577 TAAACACAGGATAATCTATC-GTGATAG
1 TAAACACAAGATAATCCATCAG-GACAG
*
7375604 TAAACACAAGATAATCC-GCTAGGACAG
1 TAAACACAAGATAATCCATC-AGGACAG
** * *
7375631 TAAACACGGGATGATCCATCAGGATAG
1 TAAACACAAGATAATCCATCAGGACAG
7375658 TAAACACAA
1 TAAACACAA
7375667 AAAATCCTCC
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
26 1 0.02
27 46 0.94
28 2 0.04
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
TAAACACAAGATAATCCATCAGGACAG
Found at i:7387903 original size:13 final size:11
Alignment explanation
Indices: 7387871--7387904 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
7387861 GCAGGAATTA
7387871 GTACAATATAT
1 GTACAATATAT
7387882 GTACAATATAT
1 GTACAATATAT
7387893 GTACAATATAT
1 GTACAATATAT
7387904 G
1 G
7387905 AGAAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (11 bp):
GTACAATATAT
Found at i:7393944 original size:20 final size:20
Alignment explanation
Indices: 7393903--7393947 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7393893 TCATTTTTTG
**
7393903 ATAAAAATGCATAAGATTTT
1 ATAAAAATGCATAAGAAATT
7393923 ATAAAAATGCATATA-AAATT
1 ATAAAAATGCATA-AGAAATT
7393943 ATAAA
1 ATAAA
7393948 TAAATATCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.31
Consensus pattern (20 bp):
ATAAAAATGCATAAGAAATT
Found at i:7394021 original size:19 final size:18
Alignment explanation
Indices: 7393992--7394036 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
7393982 TTTATTTATT
* *
7393992 AAAATAATAATTTTATAA
1 AAAACAATAATCTTATAA
*
7394010 ATAAACAATAATCTTATAT
1 A-AAACAATAATCTTATAA
7394029 AAAACAAT
1 AAAACAAT
7394037 TTAAGCGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAACAATAATCTTATAA
Found at i:7400696 original size:23 final size:23
Alignment explanation
Indices: 7400670--7400754 Score: 100
Period size: 23 Copynumber: 3.7 Consensus size: 23
7400660 ATATTCACGG
*
7400670 ACATGTTCATTTAAC-TTAATCGA
1 ACATGTTCA-TGAACATTAATCGA
* *
7400693 ACATGTTCACGAACATTAAACGA
1 ACATGTTCATGAACATTAATCGA
*
7400716 ACATGTTCATGAACATATAATTGA
1 ACATGTTCATGAACAT-TAATCGA
*
7400740 ACATGTTCACGAACA
1 ACATGTTCATGAACA
7400755 ACATTAATAA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
22 3 0.06
23 31 0.58
24 19 0.36
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (23 bp):
ACATGTTCATGAACATTAATCGA
Found at i:7400707 original size:12 final size:12
Alignment explanation
Indices: 7400690--7400754 Score: 53
Period size: 12 Copynumber: 5.5 Consensus size: 12
7400680 TTAACTTAAT
7400690 CGAACATGTTCA
1 CGAACATGTTCA
**
7400702 CGAACAT-TAAA
1 CGAACATGTTCA
7400713 CGAACATGTTCA
1 CGAACATGTTCA
* * *
7400725 TGAACAT-ATAA
1 CGAACATGTTCA
*
7400736 TTGAACATGTTCA
1 -CGAACATGTTCA
7400749 CGAACA
1 CGAACA
7400755 ACATTAATAA
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
11 11 0.28
12 27 0.68
13 2 0.05
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.25
Consensus pattern (12 bp):
CGAACATGTTCA
Found at i:7401465 original size:14 final size:14
Alignment explanation
Indices: 7401446--7401485 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7401436 TTGATTGGCA
7401446 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
7401460 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
7401474 GGAAAATGTTTT
1 GTAAAATGTTTT
7401486 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:7401498 original size:34 final size:35
Alignment explanation
Indices: 7401454--7401520 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
7401444 CAGTAAAATG
* *
7401454 TTTTCCGTAAAATGA-TTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
*
7401488 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTT
7401521 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
Found at i:7401507 original size:20 final size:20
Alignment explanation
Indices: 7401469--7401508 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7401459 CGTAAAATGA
**
7401469 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGACTTACT
*
7401489 TTTCTGTAAAATGACTTACT
1 TTTCTGGAAAATGACTTACT
7401509 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:7404842 original size:58 final size:57
Alignment explanation
Indices: 7404775--7404939 Score: 174
Period size: 58 Copynumber: 2.9 Consensus size: 57
7404765 TCAAGTGTGT
7404775 TTTCT-TTTTTTAT-TTCAATATAAACAAAAAAATTTGACAATGTTATAAA-TTTTTTTA
1 TTTCTATTTTTTATATT--ATATAAA-AAAAAAATTTGACAATGTTATAAATTTTTTTTA
* * ** *
7404832 TTTCTATTTTTTATAATTTTTTAAATTATAAATTTGACAATGTTATAAATTTTTTTTA
1 TTTCTATTTTTTAT-ATTATATAAAAAAAAAATTTGACAATGTTATAAATTTTTTTTA
* * ** *
7404890 TTTCTATTTTTTATAATTTTTTAAATTATAAATTTGACAATGTTATAAAT
1 TTTCTATTTTTTAT-ATTATATAAAAAAAAAATTTGACAATGTTATAAAT
7404940 AATGTTTAAC
Statistics
Matches: 99, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
57 26 0.26
58 71 0.72
60 2 0.02
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.56
Consensus pattern (57 bp):
TTTCTATTTTTTATATTATATAAAAAAAAAATTTGACAATGTTATAAATTTTTTTTA
Found at i:7405713 original size:14 final size:14
Alignment explanation
Indices: 7405694--7405721 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7405684 TCTTTAAAAA
7405694 GAATTAACTTATTT
1 GAATTAACTTATTT
7405708 GAATTAACTTATTT
1 GAATTAACTTATTT
7405722 TTAAAGGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
GAATTAACTTATTT
Found at i:7407833 original size:19 final size:20
Alignment explanation
Indices: 7407806--7407861 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 20
7407796 TACAAAATTT
*
7407806 AATTTAAATATATAAATT-A
1 AATTAAAATATATAAATTAA
*
7407825 TATTAAAATATA-ACAATTACA
1 AATTAAAATATATA-AATTA-A
7407846 AATTAAAATATATAAA
1 AATTAAAATATATAAA
7407862 ATTTTATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 1 0.03
19 14 0.47
21 14 0.47
22 1 0.03
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (20 bp):
AATTAAAATATATAAATTAA
Found at i:7408737 original size:18 final size:19
Alignment explanation
Indices: 7408714--7408749 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7408704 AATAATTTTT
7408714 AAAAAAAT-TTAAAATTTA
1 AAAAAAATCTTAAAATTTA
*
7408732 AAAAAAATCTTATAATTT
1 AAAAAAATCTTAAAATTT
7408750 TTACAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAAAATCTTAAAATTTA
Found at i:7408777 original size:18 final size:18
Alignment explanation
Indices: 7408746--7408806 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
7408736 AAATCTTATA
*
7408746 ATTTTTACAA-TTTTAAT
1 ATTTTTAAAATTTTTAAT
7408763 ATTTTTAAAATTTTTAAT
1 ATTTTTAAAATTTTTAAT
* *
7408781 GTTTTTCAAAATTATTTAGT
1 ATTTTT-AAAATT-TTTAAT
7408801 ATTTTT
1 ATTTTT
7408807 TTTACATTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
17 9 0.24
18 12 0.32
19 6 0.16
20 10 0.27
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (18 bp):
ATTTTTAAAATTTTTAAT
Found at i:7408889 original size:20 final size:19
Alignment explanation
Indices: 7408860--7408923 Score: 92
Period size: 20 Copynumber: 3.2 Consensus size: 19
7408850 TTTATAACAT
*
7408860 TTTAATATTTTAAAAAAAC
1 TTTAATATTTTAAAAAAAA
7408879 TTTATATATTTTAAAATAAAA
1 TTTA-ATATTTTAAAA-AAAA
7408900 TTTAATATTTTAAAAAAAAA
1 TTTAATATTTT-AAAAAAAA
7408920 TTTA
1 TTTA
7408924 CTAATTAGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
19 4 0.10
20 26 0.63
21 11 0.27
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTAATATTTTAAAAAAAA
Found at i:7409575 original size:18 final size:18
Alignment explanation
Indices: 7409538--7409593 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
7409528 TAAAAAATTC
*
7409538 AGAAATATATATAATCTAAA
1 AGAAATATA-A-AATATAAA
7409558 A-AACATATAAAATATAAA
1 AGAA-ATATAAAATATAAA
*
7409576 AGAATTATAAAA-ATAAA
1 AGAAATATAAAATATAAA
7409593 A
1 A
7409594 TTTTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
17 6 0.19
18 15 0.47
19 5 0.16
20 6 0.19
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (18 bp):
AGAAATATAAAATATAAA
Found at i:7409914 original size:26 final size:26
Alignment explanation
Indices: 7409841--7409918 Score: 81
Period size: 25 Copynumber: 3.1 Consensus size: 26
7409831 TTTTTTAAAA
*
7409841 TTTAAAATTATATATTTTAGA-ATTT
1 TTTAAAATTATATATTTTAAACATTT
* *
7409866 TATAAAA-AATA-ATTCTTAAACATTT
1 TTTAAAATTATATATT-TTAAACATTT
* *
7409891 TTTAAAATTATATATTATATACATTT
1 TTTAAAATTATATATTTTAAACATTT
7409917 TT
1 TT
7409919 ATATATTTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
23 3 0.07
24 7 0.17
25 16 0.38
26 13 0.31
27 3 0.07
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (26 bp):
TTTAAAATTATATATTTTAAACATTT
Found at i:7412886 original size:11 final size:10
Alignment explanation
Indices: 7412857--7412899 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
7412847 ACCAAAAATT
7412857 TATTTTAAAA
1 TATTTTAAAA
*
7412867 -ATTTAAAAA
1 TATTTTAAAA
7412876 GTATTTTAAAAA
1 -TATTTT-AAAA
7412888 TATTTTAAAA
1 TATTTTAAAA
7412898 TA
1 TA
7412900 AAAAATAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
9 8 0.29
10 6 0.21
11 10 0.36
12 4 0.14
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (10 bp):
TATTTTAAAA
Found at i:7412903 original size:36 final size:37
Alignment explanation
Indices: 7412861--7412945 Score: 138
Period size: 36 Copynumber: 2.4 Consensus size: 37
7412851 AAAATTTATT
* *
7412861 TTAAAAATTTAAAAAGTATTTTAAAAATATTTTAAAA
1 TTAAAAAATAAAAAAGTATTTTAAAAATATTTTAAAA
7412898 -TAAAAAATAAAAAAGTATTTTAAAAATATTTTAAAA
1 TTAAAAAATAAAAAAGTATTTTAAAAATATTTTAAAA
7412934 TTAAAAAA-AAAA
1 TTAAAAAATAAAA
7412946 TTAAAAAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 38 0.84
37 7 0.16
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (37 bp):
TTAAAAAATAAAAAAGTATTTTAAAAATATTTTAAAA
Found at i:7412927 original size:11 final size:11
Alignment explanation
Indices: 7412857--7412933 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
7412847 ACCAAAAATT
7412857 TATTTT-AAAA
1 TATTTTAAAAA
7412867 -A-TTTAAAAA
1 TATTTTAAAAA
7412876 GTATTTTAAAAA
1 -TATTTTAAAAA
7412888 TATTTTAAAATAA
1 TATTTT-AAA-AA
* ** *
7412901 AAAATAAAAAA
1 TATTTTAAAAA
7412912 GTATTTTAAAAA
1 -TATTTTAAAAA
7412924 TATTTTAAAA
1 TATTTTAAAA
7412934 TTAAAAAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
8 3 0.06
9 5 0.10
11 19 0.37
12 21 0.40
13 4 0.08
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:7424201 original size:23 final size:23
Alignment explanation
Indices: 7424175--7424228 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
7424165 TGATTTTTAA
*
7424175 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
7424198 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
7424221 ATTTAGAA
1 ATTTAGAA
7424229 AAAATCTAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:7424202 original size:13 final size:13
Alignment explanation
Indices: 7424184--7424226 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
7424174 AATTTTGAAT
7424184 TATTTAGTGATAA
1 TATTTAGTGATAA
*
7424197 TATTTA--GA-AT
1 TATTTAGTGATAA
7424207 TATTTAGTGATAA
1 TATTTAGTGATAA
7424220 TATTTAG
1 TATTTAG
7424227 AAAAAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.28
11 2 0.08
12 2 0.08
13 14 0.56
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:7425091 original size:19 final size:17
Alignment explanation
Indices: 7425044--7425097 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
7425034 AGGCTAAGCT
* *
7425044 TTTAAAAATATATTTTA
1 TTTACAAATTTATTTTA
*
7425061 TTTACCAATTTATTTTA
1 TTTACAAATTTATTTTA
7425078 TTTACTTAAATTTACTTTTA
1 TTTAC--AAATTTA-TTTTA
7425098 CATTTTCGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 19 0.63
19 6 0.20
20 5 0.17
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTACAAATTTATTTTA
Found at i:7431854 original size:23 final size:23
Alignment explanation
Indices: 7431823--7431897 Score: 123
Period size: 23 Copynumber: 3.3 Consensus size: 23
7431813 TGATTTTTAA
*
7431823 ATTTTGAATTATTTAATGATAAT
1 ATTTAGAATTATTTAATGATAAT
* *
7431846 ACTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAATGATAAT
7431869 ATTTAGAATTATTTAATGATAAT
1 ATTTAGAATTATTTAATGATAAT
7431892 ATTTAG
1 ATTTAG
7431898 GAAAAATCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.40, C:0.01, G:0.11, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAATGATAAT
Found at i:7432720 original size:17 final size:19
Alignment explanation
Indices: 7432700--7432743 Score: 65
Period size: 17 Copynumber: 2.4 Consensus size: 19
7432690 TTTAAAAAAA
7432700 TATTTTATTTAC-T-AATT
1 TATTTTATTTACTTAAATT
7432717 TATTTTATTTACTTAAATT
1 TATTTTATTTACTTAAATT
7432736 TAGTTTTA
1 TA-TTTTA
7432744 CATTTTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.50
18 1 0.04
19 6 0.25
20 5 0.21
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTTTATTTACTTAAATT
Found at i:7433937 original size:48 final size:48
Alignment explanation
Indices: 7433858--7433951 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
7433848 AGGGAATTCT
* *
7433858 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
7433906 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
7433952 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:7436516 original size:48 final size:48
Alignment explanation
Indices: 7436437--7436530 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
7436427 AGGGAATTCT
* *
7436437 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
7436485 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
7436531 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:7457716 original size:22 final size:23
Alignment explanation
Indices: 7457687--7457743 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
7457677 TGCACTAATG
7457687 AACAGAGAGCACTA-AAGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
* *
7457709 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
*
7457731 AACGGAGAGCACT
1 AACAGAGAGCACT
7457744 GACATGCTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.14
Consensus pattern (23 bp):
AACAGAGAGCACTAGAAGTGCTA
Found at i:7457751 original size:22 final size:22
Alignment explanation
Indices: 7457687--7457767 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 22
7457677 TGCACTAATG
7457687 AACAGAGAGCACT-AAAGTGCTA
1 AACAGAGAGCACTGAAA-TGCTA
* * **
7457709 TACAGAGAGCACAGATGTGCTA
1 AACAGAGAGCACTGAAATGCTA
* *
7457731 AACGGAGAGCACTGACATGCTA
1 AACAGAGAGCACTGAAATGCTA
7457753 GTAATCAGAGAGCAC
1 --AA-CAGAGAGCAC
7457768 CAACGTGCTA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
22 33 0.73
23 1 0.02
24 2 0.04
25 9 0.20
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.15
Consensus pattern (22 bp):
AACAGAGAGCACTGAAATGCTA
Found at i:7457764 original size:25 final size:25
Alignment explanation
Indices: 7457735--7457790 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
7457725 GTGCTAAACG
** *
7457735 GAGAGCACTGACATGCTAGTAATCA
1 GAGAGCACCAACATGCTAATAATCA
*
7457760 GAGAGCACCAACGTGCTAATAATCA
1 GAGAGCACCAACATGCTAATAATCA
7457785 GAGAGC
1 GAGAGC
7457791 GCGCTAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (25 bp):
GAGAGCACCAACATGCTAATAATCA
Found at i:7458748 original size:5 final size:5
Alignment explanation
Indices: 7458738--7458766 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7458728 CTATCTTTTA
7458738 TAATC TAATC TAATC TAATC TAATC TAAT
1 TAATC TAATC TAATC TAATC TAATC TAAT
7458767 ATTTATACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATC
Found at i:7459651 original size:25 final size:25
Alignment explanation
Indices: 7459609--7459657 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7459599 AAGTTGTAAA
7459609 TAAAAAAATATCTCTAGAAAATTTC
1 TAAAAAAATATCTCTAGAAAATTTC
* * * *
7459634 TAAAATAATCTCTTTAGAGAATTT
1 TAAAAAAATATCTCTAGAAAATTT
7459658 TCTCTCTACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (25 bp):
TAAAAAAATATCTCTAGAAAATTTC
Found at i:7459845 original size:19 final size:19
Alignment explanation
Indices: 7459810--7459849 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7459800 ATCTACAAGA
*
7459810 TAAATATTAAATTTAATAT
1 TAAATATTAAATATAATAT
7459829 TAAACTATTAAA-ATAATAT
1 TAAA-TATTAAATATAATAT
7459848 TA
1 TA
7459850 TTTTTGGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAATATTAAATATAATAT
Found at i:7462798 original size:15 final size:15
Alignment explanation
Indices: 7462753--7462799 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
7462743 AGATATTGTT
7462753 TATTAAATTAATTTT-
1 TATTAAA-TAATTTTC
* *
7462768 AATTAATTAATTTTTC
1 TATTAAATAA-TTTTC
7462784 TATTAAATAATTTTC
1 TATTAAATAATTTTC
7462799 T
1 T
7462800 TAACCCAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 3 0.12
15 15 0.58
16 8 0.31
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTAAATAATTTTC
Found at i:7468754 original size:15 final size:15
Alignment explanation
Indices: 7468734--7468772 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7468724 TGCTTTGGAG
7468734 GATATTCTTGTTCAT
1 GATATTCTTGTTCAT
*
7468749 GATATTC-TGTTGAT
1 GATATTCTTGTTCAT
*
7468763 TATATTCTTG
1 GATATTCTTG
7468773 AAACTTGCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (15 bp):
GATATTCTTGTTCAT
Found at i:7475220 original size:6 final size:6
Alignment explanation
Indices: 7475209--7475234 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7475199 CAATCTCTAA
7475209 GTCATT GTCATT GTCATT GTCATT GT
1 GTCATT GTCATT GTCATT GTCATT GT
7475235 TTACTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.19, T:0.50
Consensus pattern (6 bp):
GTCATT
Found at i:7475466 original size:92 final size:92
Alignment explanation
Indices: 7475309--7475492 Score: 350
Period size: 92 Copynumber: 2.0 Consensus size: 92
7475299 TCACTCACTA
7475309 ACCCACCCACCTCTCTTCCGATCATGACATACAGAAATGATCGAAGATTTGCAATGATTCCAAAA
1 ACCCACCCACCTCTCTTCCGATCATGACATACAGAAATGATCGAAGATTTGCAATGATTCCAAAA
7475374 CACGAGCAATGAAACATATAATACTCT
66 CACGAGCAATGAAACATATAATACTCT
*
7475401 ACCCACCCACCTCTCTTCCGATCATGACATACAGAAATGATTGAAGATTTGCAATGATTCCAAAA
1 ACCCACCCACCTCTCTTCCGATCATGACATACAGAAATGATCGAAGATTTGCAATGATTCCAAAA
*
7475466 CACGAGCAATGAAACGTATAATACTCT
66 CACGAGCAATGAAACATATAATACTCT
7475493 TGGTAGAATG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 90 1.00
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (92 bp):
ACCCACCCACCTCTCTTCCGATCATGACATACAGAAATGATCGAAGATTTGCAATGATTCCAAAA
CACGAGCAATGAAACATATAATACTCT
Found at i:7476500 original size:31 final size:31
Alignment explanation
Indices: 7476462--7476554 Score: 125
Period size: 31 Copynumber: 3.0 Consensus size: 31
7476452 GGCCCATTTT
7476462 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAG
*
7476493 TATTTTAAAAATATTTTAAAATTTAAAAAAAG
1 TATTTTAAAAATA-TTTAAAAATTAAAAAAAG
* * *
7476525 TATGTAAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAAAA
7476555 ATAAATATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
31 27 0.49
32 25 0.45
33 3 0.05
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAG
Found at i:7476502 original size:11 final size:11
Alignment explanation
Indices: 7476462--7476545 Score: 61
Period size: 10 Copynumber: 7.9 Consensus size: 11
7476452 GGCCCATTTT
7476462 TATTTT-AAAA
1 TATTTTAAAAA
7476472 -ATTTTAAAAA
1 TATTTTAAAAA
**
7476482 -ATTAAAAAAA
1 TATTTTAAAAA
7476492 GTATTTTAAAAA
1 -TATTTTAAAAA
7476504 TATTTT-AAAA
1 TATTTTAAAAA
**
7476514 T-TTAAAAAAA
1 TATTTTAAAAA
* *
7476524 GTATGTAAAAAA
1 -TATTTTAAAAA
7476536 TATTTTAAAA
1 TATTTTAAAA
7476546 TTAAAAAAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
9 7 0.12
10 21 0.36
11 15 0.26
12 15 0.26
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:7476524 original size:32 final size:32
Alignment explanation
Indices: 7476462--7476555 Score: 136
Period size: 32 Copynumber: 3.0 Consensus size: 32
7476452 GGCCCATTTT
* *
7476462 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTTTAAAATTTAAAAAAAG
7476493 TATTTTAAAAATATTTTAAAATTTAAAAAAAG
1 TATTTTAAAAATATTTTAAAATTTAAAAAAAG
* * *
7476525 TATGTAAAAAATATTTTAAAATTAAAAAAAA
1 TATTTTAAAAATATTTTAAAATTTAAAAAAA
7476556 TAAATATATT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
31 12 0.21
32 45 0.79
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (32 bp):
TATTTTAAAAATATTTTAAAATTTAAAAAAAG
Found at i:7478343 original size:21 final size:21
Alignment explanation
Indices: 7478319--7478358 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7478309 AATGTTTTAC
7478319 GTGGATTCAAATCCCATTAGT
1 GTGGATTCAAATCCCATTAGT
7478340 GTGGATTCAAATCCCATTA
1 GTGGATTCAAATCCCATTA
7478359 TATGCATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (21 bp):
GTGGATTCAAATCCCATTAGT
Found at i:7482968 original size:4 final size:4
Alignment explanation
Indices: 7482959--7483009 Score: 59
Period size: 4 Copynumber: 12.8 Consensus size: 4
7482949 TAAGAACAGA
* * *
7482959 GTAT GTAT GTAT GCT-T GTAT GTAT GCAT GTAG GTAT GCAT GTAT GTAT
1 GTAT GTAT GTAT G-TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7483007 GTA
1 GTA
7483010 CATGATTCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 1 0.03
4 37 0.95
5 1 0.03
ACGTcount: A:0.24, C:0.06, G:0.27, T:0.43
Consensus pattern (4 bp):
GTAT
Found at i:7482979 original size:12 final size:12
Alignment explanation
Indices: 7482961--7483007 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
7482951 AGAACAGAGT
7482961 ATGTATGTATGC
1 ATGTATGTATGC
*
7482973 TTGTATGTATGC
1 ATGTATGTATGC
*
7482985 ATGTAGGTATGC
1 ATGTATGTATGC
7482997 ATGTATGTATG
1 ATGTATGTATG
7483008 TACATGATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.23, C:0.06, G:0.28, T:0.43
Consensus pattern (12 bp):
ATGTATGTATGC
Found at i:7484316 original size:62 final size:62
Alignment explanation
Indices: 7484219--7484343 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
7484209 TTGGCCTTGG
7484219 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
1 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
7484281 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
1 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
7484343 G
1 G
7484344 ATCCTATGTG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (62 bp):
GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
Found at i:7487302 original size:34 final size:37
Alignment explanation
Indices: 7487258--7487347 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 37
7487248 ATCGAAGATT
* *
7487258 GTGATTGTAAATCAACGAATC-GTAAGAAT-A-AACC
1 GTGATCGTAAATCAACGAATCTGTAAAAATGACAACC
* * * *
7487292 GTGATCGTAAATCAGC-AAGCTTTAAAAATGACAATC
1 GTGATCGTAAATCAACGAATCTGTAAAAATGACAACC
7487328 GTGATCGTAAATCAACGAAT
1 GTGATCGTAAATCAACGAAT
7487348 TGTTAGAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
33 3 0.07
34 20 0.45
35 1 0.02
36 18 0.41
37 2 0.05
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (37 bp):
GTGATCGTAAATCAACGAATCTGTAAAAATGACAACC
Found at i:7487333 original size:109 final size:109
Alignment explanation
Indices: 7487086--7487669 Score: 642
Period size: 109 Copynumber: 5.4 Consensus size: 109
7487076 CTTGTTGAAG
* *
7487086 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCAAATTGTTAGAAAATCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGAAAATTGTTAGAAAATCGAAGG
* * * * * **
7487151 TCGTGATTGAAAATCAACG----GTAAGAATAAACTGTGATAAT
66 TTGTGATTGTAAATCAGCGAATCGTAAGAATAAGCCGTGATCGT
* * *
7487191 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAACTCAGAAAATTGCTAGAAAATCGAAGA
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGAAAATTGTTAGAAAATCGAAGG
* *
7487256 TTGTGATTGTAAATCAACGAATCGTAAGAATAAACCGTGATCGT
66 TTGTGATTGTAAATCAGCGAATCGTAAGAATAAGCCGTGATCGT
* * * * * *
7487300 AAATCAGCAAGCTTTAAAAATGACAATCGTGATCGTAAATCA-ACGAATTGTTAGAAAACCAAAG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGA-AAATTGTTAGAAAATCGAAG
* ** * * *
7487364 GTCGTGATCATAAATCAGC-AGACCGTAAGAATAAGTCGTGATTGT
65 GTTGTGATTGTAAATCAGCGA-ATCGTAAGAATAAGCCGTGATCGT
* * * *
7487409 AAATCAACGAGCTTTAAAAATGACAGTTGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGAAAATTGTTAGAAAATCGAAGG
* * * * *
7487474 TTGTGATTGTAAATTAGCGTATTGTAAGAATAAGCCATGATTGT
66 TTGTGATTGTAAATCAGCGAATCGTAAGAATAAGCCGTGATCGT
* * * * *
7487518 AAATCAACGAGCTTTAAAAATGATAGTCGTGATCGTAAATTA-ATGAACTGTTAGAAAACCGAAG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGA-AAATTGTTAGAAAATCGAAG
** * * * *
7487582 GTTGTGATAATAAATTAGTGGATCGTAAGAATAAGCCATGATCGT
65 GTTGTGATTGTAAATCAGCGAATCGTAAGAATAAGCCGTGATCGT
* * * *
7487627 AAATCAACAAGCTTTAAAAATGACAATCGTGATTGGAAATCAG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAG
7487670 TGAACTGTAA
Statistics
Matches: 404, Mismatches: 65, Indels: 15
0.83 0.13 0.03
Matches are distributed among these distances:
105 77 0.19
108 2 0.00
109 325 0.80
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (109 bp):
AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATCAGAAAATTGTTAGAAAATCGAAGG
TTGTGATTGTAAATCAGCGAATCGTAAGAATAAGCCGTGATCGT
Found at i:7487334 original size:36 final size:35
Alignment explanation
Indices: 7487190--7487454 Score: 101
Period size: 36 Copynumber: 7.3 Consensus size: 35
7487180 ACTGTGATAA
* * *
7487190 TAAATCAACGAGCTTTAAAAATGACAGTCGTGATCG
1 TAAATCAGCAAGCTTTAAAAATGA-AATCGTGATCG
* ** * *
7487226 TAACTCAG-AAAATTGCTAGAAAATCGAAGATTGTGATTG
1 TAAATCAGCAAGCTT--TA-AAAAT-GAA-ATCGTGATCG
* * * * *
7487265 TAAATCAACGAATC-GTAAGAAT-AAACCGTGATCG
1 TAAATCAGC-AAGCTTTAAAAATGAAATCGTGATCG
7487299 TAAATCAGCAAGCTTTAAAAATGACAATCGTGATCG
1 TAAATCAGCAAGCTTTAAAAATGA-AATCGTGATCG
* * ** *
7487335 TAAATCAACGAA-TTGTTAGAAAACCAAAGGTCGTGATCA
1 TAAATCAGC-AAGCT-TTA-AAAATGAAA--TCGTGATCG
** * * *
7487374 TAAATCAGC-AGACCGTAAGAAT-AAGTCGTGATTG
1 TAAATCAGCAAG-CTTTAAAAATGAAATCGTGATCG
* * * * *
7487408 TAAATCAACGAGCTTTAAAAATGACAGTTGTGATTG
1 TAAATCAGCAAGCTTTAAAAATGA-AATCGTGATCG
7487444 TAAATCAGCAA
1 TAAATCAGCAA
7487455 ACTGTTAGAA
Statistics
Matches: 166, Mismatches: 43, Indels: 40
0.67 0.17 0.16
Matches are distributed among these distances:
33 3 0.02
34 43 0.26
35 9 0.05
36 46 0.28
37 17 0.10
38 15 0.09
39 31 0.19
41 2 0.01
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.25
Consensus pattern (35 bp):
TAAATCAGCAAGCTTTAAAAATGAAATCGTGATCG
Found at i:7487478 original size:39 final size:36
Alignment explanation
Indices: 7487401--7487487 Score: 104
Period size: 36 Copynumber: 2.3 Consensus size: 36
7487391 AGAATAAGTC
* *
7487401 GTGATTGTAAATCAACGAGCTTTAAAAATGACAGTT
1 GTGATTGTAAATCAACAAACTTTAAAAATGACAGTT
*
7487437 GTGATTGTAAATCAGCAAACTGTTAGAAAATCGA-AGGTT
1 GTGATTGTAAATCAACAAACT-TTA-AAAAT-GACA-GTT
7487476 GTGATTGTAAAT
1 GTGATTGTAAAT
7487488 TAGCGTATTG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
36 18 0.41
37 3 0.07
38 6 0.14
39 17 0.39
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (36 bp):
GTGATTGTAAATCAACAAACTTTAAAAATGACAGTT
Found at i:7487480 original size:218 final size:215
Alignment explanation
Indices: 7487086--7487706 Score: 727
Period size: 218 Copynumber: 2.9 Consensus size: 215
7487076 CTTGTTGAAG
* * *
7487086 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAGCAAATTGTTAGAAAATCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAACGAATTGTTAGAAAACCGAAGG
* * *
7487151 TCGTGAT-TGAAA-ATCA-ACGGTAAGAATAA-ACTGTGATAATAAATCAACGAGCTTTAAAAAT
66 TCGTGATAT-AAATAGCAGACCGTAAGAATAAGAC-GTGATAGTAAATCAACGAGCTTTAAAAAT
* * * *
7487212 GACAGTCGTGATCGTAACTCAGAAAATTGCTAGAAAATCGAAGATTGTGATTGTAAATCAACGAA
129 GACAGTCGTGATTGTAAATCAGAAAACTG-TAGAAAATCGAAGGTTGTGATTGTAAATCAACGAA
*
7487277 TCGTAAGAATAAACCGTGATCGT
193 TCGTAAGAATAAACCATGATCGT
* * * * *
7487300 AAATCAGCAAGCTTTAAAAATGACAATCGTGATCGTAAATCAACGAATTGTTAGAAAACCAAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAACGAATTGTTAGAAAACCGAAGG
* *
7487365 TCGTGATCATAAATCAGCAGACCGTAAGAATAAGTCGTGATTGTAAATCAACGAGCTTTAAAAAT
66 TCGTGAT-ATAAAT-AGCAGACCGTAAGAATAAGACGTGATAGTAAATCAACGAGCTTTAAAAAT
* * * * *
7487430 GACAGTTGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAGGTTGTGATTGTAAATTAGCGTA
129 GACAGTCGTGATTGTAAATCAGAAAACTG-TAGAAAATCGAAGGTTGTGATTGTAAATCAACGAA
* * *
7487495 TTGTAAGAATAAGCCATGATTGT
193 TCGTAAGAATAAACCATGATCGT
* * *
7487518 AAATCAACGAGCTTTAAAAATGATAGTCGTGATCGTAAATTAATGAACTGTTAGAAAACCGAAGG
1 AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAACGAATTGTTAGAAAACCGAAGG
* ** * * * * *
7487583 TTGTGATAATAAATTAGTGGATCGTAAGAATAAGCCATGATCGTAAATCAACAAGCTTTAAAAAT
66 TCGTGAT-ATAAA-TAGCAGACCGTAAGAATAAGACGTGATAGTAAATCAACGAGCTTTAAAAAT
* * ** * *
7487648 GACAATCGTGATTGGAAATCAGTGAACTGTA-AGAAT--AA-GTCGTGATTGTAAATCAACGA
129 GACAGTCGTGATTGTAAATCAGAAAACTGTAGAAAATCGAAGGTTGTGATTGTAAATCAACGA
7487707 GCTTTAAAAA
Statistics
Matches: 346, Mismatches: 54, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
213 17 0.05
214 66 0.19
215 3 0.01
216 5 0.01
217 5 0.01
218 248 0.72
219 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (215 bp):
AAATCAACGAGCTTTAAAAATGACAGTCGTGATCGTAAATTAACGAATTGTTAGAAAACCGAAGG
TCGTGATATAAATAGCAGACCGTAAGAATAAGACGTGATAGTAAATCAACGAGCTTTAAAAATGA
CAGTCGTGATTGTAAATCAGAAAACTGTAGAAAATCGAAGGTTGTGATTGTAAATCAACGAATCG
TAAGAATAAACCATGATCGT
Found at i:7487729 original size:36 final size:36
Alignment explanation
Indices: 7487620--7487734 Score: 126
Period size: 36 Copynumber: 3.2 Consensus size: 36
7487610 GAATAAGCCA
*
7487620 TGATCGTAAATCAACAAGCTTTAAAAATGACAATCG
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATCG
* * ** * * * *
7487656 TGATTGGAAATCAGTGAACTGTAAGAAT-A-AGTCG
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATCG
*
7487690 TGATTGTAAATCAACGAGCTTTAAAAATGACAATCG
1 TGATCGTAAATCAACGAGCTTTAAAAATGACAATCG
7487726 TGATCGTAA
1 TGATCGTAA
7487735 GAATAAGTTG
Statistics
Matches: 60, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
34 26 0.43
35 2 0.03
36 32 0.53
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (36 bp):
TGATCGTAAATCAACGAGCTTTAAAAATGACAATCG
Found at i:7487764 original size:55 final size:55
Alignment explanation
Indices: 7487676--7487789 Score: 183
Period size: 55 Copynumber: 2.1 Consensus size: 55
7487666 TCAGTGAACT
*
7487676 GTAAGAATAAGTCGTGATTGTAAATCAACGAGCTTTAAAAATGACAATCGTGATC
1 GTAAGAATAAGTCGTGATCGTAAATCAACGAGCTTTAAAAATGACAATCGTGATC
* ** *
7487731 GTAAGAATAAGTTGTGATCGTAAATCAGTGAGCTTTAAAAATGACAGTCGTGATC
1 GTAAGAATAAGTCGTGATCGTAAATCAACGAGCTTTAAAAATGACAATCGTGATC
7487786 GTAA
1 GTAA
7487790 ATTAGCTGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (55 bp):
GTAAGAATAAGTCGTGATCGTAAATCAACGAGCTTTAAAAATGACAATCGTGATC
Found at i:7497428 original size:5 final size:5
Alignment explanation
Indices: 7497418--7497446 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7497408 AATTGTTTTG
7497418 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
7497447 CCTAATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:7511289 original size:21 final size:22
Alignment explanation
Indices: 7511252--7511295 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
7511242 CTTAGTTTCC
7511252 TCAAGGAAAAATCAAGTT-TTT
1 TCAAGGAAAAATCAAGTTATTT
*
7511273 TCAA-GAAAAACTTAAGTTATTT
1 TCAAGGAAAAA-TCAAGTTATTT
7511295 T
1 T
7511296 TTTTATAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
21 10 0.50
22 4 0.20
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (22 bp):
TCAAGGAAAAATCAAGTTATTT
Found at i:7513106 original size:73 final size:68
Alignment explanation
Indices: 7512968--7513106 Score: 179
Period size: 68 Copynumber: 2.0 Consensus size: 68
7512958 TTTAATAGAT
* **
7512968 TTAATATTAAATTAAATTTAATACTTATCTTAATAGTATTTTATTAATCTAATATTAAAGTGATT
1 TTAATATTAAATTAAATTTAATACTTATCTTAATAATATTAGATTAATCTAATATTAAAGTGATT
7513033 ATC
66 ATC
** *
7513036 TTAATATTAAATTAAATTTAATGTTTATCTTGTAGATAAATATTAGATTAAATTTAATATTAAAG
1 TTAATATTAAATTAAATTTAATACTTATC-T-TA-AT-AATATTAGATT-AATCTAATATTAAAG
7513101 TGATTA
61 TGATTA
7513107 AGTTTAATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
68 27 0.45
69 1 0.02
70 2 0.03
71 2 0.03
72 8 0.13
73 20 0.33
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.47
Consensus pattern (68 bp):
TTAATATTAAATTAAATTTAATACTTATCTTAATAATATTAGATTAATCTAATATTAAAGTGATT
ATC
Found at i:7515677 original size:22 final size:22
Alignment explanation
Indices: 7515658--7515719 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
7515648 TAAGTTATAA
7515658 TATT-TTATT-TGATATTTTAT
1 TATTATTATTATGATATTTTAT
*
7515678 TATTATTGTTATGATATTTTAT
1 TATTATTATTATGATATTTTAT
* **
7515700 TATTATAATGGTGATATTTT
1 TATTATTATTATGATATTTT
7515720 CAAGGAAAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 4 0.11
21 4 0.11
22 27 0.77
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (22 bp):
TATTATTATTATGATATTTTAT
Found at i:7521674 original size:21 final size:22
Alignment explanation
Indices: 7521649--7521692 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
7521639 CACTCTTCCT
7521649 TTTCTTCATCGATTATTGCAGG
1 TTTCTTCATCGATTATTGCAGG
7521671 TTCTTCTTCATCGATTATTGCA
1 -T-TTCTTCATCGATTATTGCA
7521693 CTGTTCACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (22 bp):
TTTCTTCATCGATTATTGCAGG
Found at i:7521707 original size:24 final size:24
Alignment explanation
Indices: 7521656--7521710 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
7521646 CCTTTTCTTC
* *
7521656 ATCGATTATTGCAGGTTCTTCTTC
1 ATCGATTATTGCAGGTTCTACTTA
*
7521680 ATCGATTATTGCACTGTTC-ACTTA
1 ATCGATTATTGCA-GGTTCTACTTA
7521704 ATCGATT
1 ATCGATT
7521711 TCCCTTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.44
Consensus pattern (24 bp):
ATCGATTATTGCAGGTTCTACTTA
Found at i:7523012 original size:22 final size:22
Alignment explanation
Indices: 7522971--7523059 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 22
7522961 TTCAATGAAA
7522971 CTGGAAATTG--TTGCATTTGTT
1 CTGGAAATTGTTTTG-ATTTGTT
* *
7522992 -TTGATATTGTTCTTGATTTGTT
1 CTGGAAATTGTT-TTGATTTGTT
*
7523014 CTGGAAATTGTTTTGA-TAGTCT
1 CTGGAAATTGTTTTGATTTGT-T
7523036 GCTGGAAATTGTTCTTGATTTGTT
1 -CTGGAAATTGTT-TTGATTTGTT
7523060 AGTGAGTAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
20 7 0.13
21 3 0.06
22 12 0.22
23 24 0.44
24 5 0.09
25 3 0.06
ACGTcount: A:0.18, C:0.08, G:0.22, T:0.52
Consensus pattern (22 bp):
CTGGAAATTGTTTTGATTTGTT
Found at i:7523059 original size:34 final size:35
Alignment explanation
Indices: 7523009--7523166 Score: 85
Period size: 34 Copynumber: 4.5 Consensus size: 35
7522999 TGTTCTTGAT
* *
7523009 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAA
1 TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
* **
7523044 TTGTTCTTG-ATTTGTTAGTGAGTAGAAGATGAAACTGGAAA
1 TTGTTCTTGAATTTGTT-TTGA-TAG--TCTG---CTGGAAA
* * * * * *
7523085 TTG---TTGCATTTGTTTTGATATTGTTCTTG-AT
1 TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
** *
7523116 TTGTTCCGGAAATTGTTTTGATAGTCTGCTGGAAA
1 TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
7523151 TTGTTCTTG-ATTTGTT
1 TTGTTCTTGAATTTGTT
7523167 AGTGAGTAGA
Statistics
Matches: 87, Mismatches: 24, Indels: 25
0.64 0.18 0.18
Matches are distributed among these distances:
31 4 0.05
32 3 0.03
34 30 0.34
35 20 0.23
36 3 0.03
37 2 0.02
38 8 0.09
39 7 0.08
41 10 0.11
ACGTcount: A:0.22, C:0.08, G:0.24, T:0.47
Consensus pattern (35 bp):
TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
Found at i:7523151 original size:107 final size:107
Alignment explanation
Indices: 7522965--7523194 Score: 451
Period size: 107 Copynumber: 2.1 Consensus size: 107
7522955 GCTGTTTTCA
*
7522965 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCTGGAAATTGTTTTGA
1 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCCGGAAATTGTTTTGA
7523030 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
66 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
7523072 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCCGGAAATTGTTTTGA
1 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCCGGAAATTGTTTTGA
7523137 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
66 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
7523179 ATGAAACTGGAAATTG
1 ATGAAACTGGAAATTG
7523195 CAAGTATAGT
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 122 1.00
ACGTcount: A:0.25, C:0.07, G:0.24, T:0.44
Consensus pattern (107 bp):
ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCCGGAAATTGTTTTGA
TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
Found at i:7527270 original size:91 final size:91
Alignment explanation
Indices: 7527158--7527451 Score: 425
Period size: 91 Copynumber: 3.4 Consensus size: 91
7527148 ATGATTTTAG
*
7527158 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
7527223 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
7527249 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
7527314 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
7527340 TAAATTCATATAAGAAAATTT-TTA-T--G---------AAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
* *
7527392 TTTAATAATAATTATATTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
* * *
7527418 CAAATTCATATAAGAAAATTTATTACTAATAATT
1 TAAATTCATATAAGAAAATTTATTATTAAGAATT
7527452 ATTTTAAATT
Statistics
Matches: 187, Mismatches: 8, Indels: 21
0.87 0.04 0.10
Matches are distributed among these distances:
78 69 0.37
79 3 0.02
80 1 0.01
87 1 0.01
90 3 0.02
91 110 0.59
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATATTAATTATTTTAAATTATA
Found at i:7527332 original size:47 final size:47
Alignment explanation
Indices: 7527173--7527324 Score: 172
Period size: 47 Copynumber: 3.3 Consensus size: 47
7527163 TCATATAAGA
*
7527173 ATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATT
1 ATATTTAATATTAAGAATTTTATGAAATTATATATCATTATTAAATT
** *
7527220 ATATTTAATATTAATTA-TTT-T-AAATTATATA-AATTCATATAAGA--
1 ATATTTAATATTAAGAATTTTATGAAATTATATATCATT-AT-TAA-ATT
* * *
7527264 AAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATT
1 ATATTTAATATTAAGAATTTTATGAAATTATATATCATTATTAAATT
7527311 ATATTTAATATTAA
1 ATATTTAATATTAA
7527325 TTATTTTAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
43 3 0.04
44 24 0.29
45 8 0.10
46 8 0.10
47 37 0.45
48 3 0.04
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (47 bp):
ATATTTAATATTAAGAATTTTATGAAATTATATATCATTATTAAATT
Found at i:7527375 original size:78 final size:78
Alignment explanation
Indices: 7527281--7527438 Score: 280
Period size: 78 Copynumber: 2.0 Consensus size: 78
7527271 TTATCAAGAA
* * *
7527281 TTTTATGAAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATT
1 TTTTATGAAATTATATATCATTATTAAATTATATTTAATAATAATTATATTAAATTATACAAATT
7527346 CATATAAGAAAAT
66 CATATAAGAAAAT
*
7527359 TTTTATGAAATTATATATTATTATTAAATTATATTTAATAATAATTATATTAAATTATACAAATT
1 TTTTATGAAATTATATATCATTATTAAATTATATTTAATAATAATTATATTAAATTATACAAATT
7527424 CATATAAGAAAAT
66 CATATAAGAAAAT
7527437 TT
1 TT
7527439 ATTACTAATA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (78 bp):
TTTTATGAAATTATATATCATTATTAAATTATATTTAATAATAATTATATTAAATTATACAAATT
CATATAAGAAAAT
Found at i:7527532 original size:59 final size:58
Alignment explanation
Indices: 7527469--7527657 Score: 181
Period size: 59 Copynumber: 3.2 Consensus size: 58
7527459 ATTTTATTAA
7527469 ATCATATATTTTAATTAAAATATATTTAATAATTATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATTATTATTT-AAATTATATTTTATAGT
* * * * * *
7527528 ATCATATATTATGATTTTAGTAAAT-TCATATAAGAA-TATTGATTATTAA-GA-ATTTTATTA-
1 ATCATATATT-TTA-ATTA--AAATAT-ATTTAATAATTATT-ATT-TAAATTATATTTTA-TAG
*
7527588 A
58 T
*
7527589 ATCATATATTTTAATTAAAATATATTTAATAATAATTATCTTAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TTAAATTATATTTTATAGT
7527648 ATCATATATT
1 ATCATATATT
7527658 ATGATTTGAG
Statistics
Matches: 101, Mismatches: 15, Indels: 28
0.70 0.10 0.19
Matches are distributed among these distances:
57 16 0.16
58 8 0.08
59 29 0.29
60 4 0.04
61 19 0.19
62 8 0.08
63 16 0.16
64 1 0.01
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (58 bp):
ATCATATATTTTAATTAAAATATATTTAATAATTATTATTTAAATTATATTTTATAGT
Found at i:7527588 original size:120 final size:120
Alignment explanation
Indices: 7527458--7527753 Score: 540
Period size: 120 Copynumber: 2.5 Consensus size: 120
7527448 AATTATTTTA
*
7527458 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TTCAAATTATATTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATCTT-AAATTATATTT
*
7527522 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
7527578 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATCTTAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATCTTAAATTATATTTT
7527643 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
7527698 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATCTTAAA
7527754 ATATGATTAA
Statistics
Matches: 171, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
120 169 0.99
121 2 0.01
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATCTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:7527590 original size:130 final size:129
Alignment explanation
Indices: 7527419--7527753 Score: 447
Period size: 120 Copynumber: 2.7 Consensus size: 129
7527409 TAAATTATAC
* * * *
7527419 AAATTCATATAAGAAAATTTATTACTAATAATTATTTTAAATTTTATTAAATCATATATTTTAAT
1 AAATTCATATAAGAATATTGATTATTAAGAATT-TTTTAAATTTTATTAAATCATATATTTTAAT
* *
7527484 TAAAATATATTTAATAATTATTAT-TTCAAATTATATTTTATAGTATCATATATTATGATTTTAG
65 TAAAATATATTTAATAATAATTATCTT-AAATTATATTTTATAGTATCATATATTATGATTTGAG
7527548 T
129 T
7527549 AAATTCATATAAGAATATTGATTATTAAG---------AATTTTATTAAATCATATATTTTAATT
1 AAATTCATATAAGAATATTGATTATTAAGAATTTTTTAAATTTTATTAAATCATATATTTTAATT
7527605 AAAATATATTTAATAATAATTATCTTAAATTATATTTTATAGTATCATATATTATGATTTGAGT
66 AAAATATATTTAATAATAATTATCTTAAATTATATTTTATAGTATCATATATTATGATTTGAGT
*
7527669 AAATTCATATAAGAATATTGATTATTAAG---------AATTTTATTAAATTATATATTTTAATT
1 AAATTCATATAAGAATATTGATTATTAAGAATTTTTTAAATTTTATTAAATCATATATTTTAATT
*
7527725 AAAATATATTTAATAATAATTATGTTAAA
66 AAAATATATTTAATAATAATTATCTTAAA
7527754 ATATGATTAA
Statistics
Matches: 196, Mismatches: 8, Indels: 12
0.91 0.04 0.06
Matches are distributed among these distances:
120 169 0.86
121 2 0.01
130 25 0.13
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.48
Consensus pattern (129 bp):
AAATTCATATAAGAATATTGATTATTAAGAATTTTTTAAATTTTATTAAATCATATATTTTAATT
AAAATATATTTAATAATAATTATCTTAAATTATATTTTATAGTATCATATATTATGATTTGAGT
Found at i:7527593 original size:61 final size:61
Alignment explanation
Indices: 7527528--7527718 Score: 194
Period size: 61 Copynumber: 3.2 Consensus size: 61
7527518 ATTTTATAGT
*
7527528 ATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
* * * * * * * * * * *
7527589 ATCATATATTTTAATTAAAATATATTTA-ATAATAATTATCTTA-AATT-A-TATTTTA-TAGT
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAA-TAT-TGATTATTAAGAATTTTATTA-A
*
7527648 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
1 ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
*
7527709 ATTATATATT
1 ATCATATATT
7527719 TTAATTAAAA
Statistics
Matches: 97, Mismatches: 25, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
58 4 0.04
59 33 0.34
60 14 0.14
61 42 0.43
62 4 0.04
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (61 bp):
ATCATATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAA
Found at i:7527715 original size:59 final size:59
Alignment explanation
Indices: 7527532--7527715 Score: 157
Period size: 57 Copynumber: 3.1 Consensus size: 59
7527522 TATAGTATCA
*
7527532 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
* * * * * * *
7527591 CATA-TAT--TTTAATTAAAATAT-ATTTAATAATAATT-ATCT-TAAATTATATTTTA-TAGTA
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAAT-ATTGAT-TATTAA-GA-ATTTTATTA-AA
7527649 T
59 T
*
7527650 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
7527711 TATAT
1 TATAT
7527716 ATTTTAATTA
Statistics
Matches: 93, Mismatches: 16, Indels: 32
0.66 0.11 0.23
Matches are distributed among these distances:
56 5 0.05
57 17 0.18
58 11 0.12
59 16 0.17
61 11 0.12
62 11 0.12
63 17 0.18
64 5 0.05
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.48
Consensus pattern (59 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
Found at i:7527727 original size:18 final size:17
Alignment explanation
Indices: 7527699--7527733 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7527689 ATTATTAAGA
*
7527699 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7527716 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7527734 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7527953 original size:44 final size:45
Alignment explanation
Indices: 7527890--7527987 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
7527880 CTATTACACC
*
7527890 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGACATACTATTACGCCTCTAT
* * *
7527934 TCCATTACATTCAACCAAACAATTGACTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGACATACTATTACGCCTCTAT
*
7527979 TCCAATACA
1 TCCATTACA
7527988 GCGACCCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.35, C:0.31, G:0.05, T:0.30
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGACATACTATTACGCCTCTAT
Found at i:7538169 original size:22 final size:21
Alignment explanation
Indices: 7538125--7538175 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
7538115 GTTTTCCTAC
7538125 AAAAAT-AA-AATAAAATAGA
1 AAAAATAAATAATAAAATAGA
7538144 AAAAATAAATAATAATAATAGGA
1 AAAAATAAATAATAA-AATA-GA
7538167 AAAAA-AAAT
1 AAAAATAAAT
7538176 TCTTTTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.21
20 2 0.07
21 5 0.18
22 8 0.29
23 7 0.25
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (21 bp):
AAAAATAAATAATAAAATAGA
Found at i:7545272 original size:29 final size:32
Alignment explanation
Indices: 7545240--7545299 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 32
7545230 TCTTTGCTTC
*
7545240 TTTCTTCAATTT-GGCCC-AATTGT-TTCCTT
1 TTTCTTCAATTTAGCCCCAAATTGTATTCCTT
*
7545269 TTTCTTCTATTTAGCCCCAAATTGTATTCCT
1 TTTCTTCAATTTAGCCCCAAATTGTATTCCT
7545300 GCACAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 11 0.42
30 4 0.15
31 6 0.23
32 5 0.19
ACGTcount: A:0.17, C:0.25, G:0.08, T:0.50
Consensus pattern (32 bp):
TTTCTTCAATTTAGCCCCAAATTGTATTCCTT
Found at i:7554250 original size:90 final size:91
Alignment explanation
Indices: 7554126--7554297 Score: 256
Period size: 90 Copynumber: 1.9 Consensus size: 91
7554116 GCCCCTCCTA
* * *
7554126 ATTTTTTTTGCACTCAATTGAGCACCTGAGCTTTCAAAATGTATCAAAAAGACCCTCAAACTTAT
1 ATTTTTTTTGCACTCAATTGAGCACCTGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATTAT
7554191 TAAAAAAAGCAATTAAGTCCTTACTT
66 TAAAAAAAGCAATTAAGTCCTTACTT
* * * *
7554217 ATTTTTTTT-CACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATTTT
1 ATTTTTTTTGCACTCAATTGAGCACCTGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATTAT
* *
7554281 TTAAAACAGCAATTAAG
66 TAAAAAAAGCAATTAAG
7554298 CCCCTACTCT
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
90 63 0.88
91 9 0.12
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.34
Consensus pattern (91 bp):
ATTTTTTTTGCACTCAATTGAGCACCTGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATTAT
TAAAAAAAGCAATTAAGTCCTTACTT
Found at i:7554365 original size:10 final size:10
Alignment explanation
Indices: 7554346--7554385 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
7554336 ATTAAAAAGT
7554346 ATAAAATTTA
1 ATAAAATTTA
* *
7554356 TTAAATTTTA
1 ATAAAATTTA
7554366 ATAAAATTTA
1 ATAAAATTTA
7554376 A-AAAATTTA
1 ATAAAATTTA
7554385 A
1 A
7554386 AAATATTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
ATAAAATTTA
Found at i:7554386 original size:45 final size:44
Alignment explanation
Indices: 7554330--7554418 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 44
7554320 AAAATATATA
*
7554330 TAAAAAATTAAAAAGTA-TAAAATTTATTAA-ATTTTAATAAAATT
1 TAAAAAATTAAAAA-TATTAAAAATTA-TAATATTTTAATAAAATT
* *
7554374 TAAAAAATTTAAAAATATTAAAAATTATAATTTTTTTATAAAATT
1 TAAAAAA-TTAAAAATATTAAAAATTATAATATTTTAATAAAATT
7554419 CGTAAAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
44 12 0.31
45 27 0.69
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (44 bp):
TAAAAAATTAAAAATATTAAAAATTATAATATTTTAATAAAATT
Found at i:7554720 original size:19 final size:19
Alignment explanation
Indices: 7554698--7554760 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
7554688 ATTTCTATAT
7554698 ATTTTATAATTTTTTTACG
1 ATTTTATAATTTTTTTACG
** *
7554717 ATTTTTATAA-AATTTTACA
1 A-TTTTATAATTTTTTTACG
*
7554736 ATTTT-TTATATTTTTTACG
1 ATTTTATAAT-TTTTTTACG
7554755 ATTTTA
1 ATTTTA
7554761 CTTTTTTCTA
Statistics
Matches: 33, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
17 2 0.06
18 4 0.12
19 19 0.58
20 8 0.24
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTTTATAATTTTTTTACG
Found at i:7554804 original size:28 final size:29
Alignment explanation
Indices: 7554772--7554835 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
7554762 TTTTTTCTAA
*
7554772 TTTTATT-AAATTT-TTAATATTTGA-ATTC
1 TTTTATTAAAATTTAATAATATTT-ATA-TC
7554800 TTTTATTAAAATTTAATAATATTTATATC
1 TTTTATTAAAATTTAATAATATTTATATC
7554829 TTTTATT
1 TTTTATT
7554836 GTTTTTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 7 0.22
29 16 0.50
30 9 0.28
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (29 bp):
TTTTATTAAAATTTAATAATATTTATATC
Found at i:7555024 original size:86 final size:87
Alignment explanation
Indices: 7554887--7555066 Score: 242
Period size: 86 Copynumber: 2.1 Consensus size: 87
7554877 AAGCATGGAG
* * * *
7554887 TTAATTGCTTTTTTTGAAAAGTTTGAGGATCTTTTTGATGCATTTTGAAAGTTCAAGTACCGAAT
1 TTAATTGCATTTTTTGAAAAGTTTGAGGATCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAAA
7554952 TGAGTGCAAAAAAAAAGTAGGGGC
66 TGAGTG--AAAAAAAAGTAGGGGC
* *
7554976 TTAATTGCATTTTTT-AAGA-TTTGAAGG-T-TTTTTTATGCATTTTAAAAGTTCAAGTACCCAA
1 TTAATTGCATTTTTTGAAAAGTTTG-AGGATCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAA
*
7555037 ATGAGTGGAAAAAAAGTAGGGGC
65 ATGAGTGAAAAAAAAGTAGGGGC
7555060 TTAATTG
1 TTAATTG
7555067 TTTCTTTTTT
Statistics
Matches: 83, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
84 22 0.27
86 36 0.43
87 5 0.06
88 6 0.07
89 14 0.17
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.37
Consensus pattern (87 bp):
TTAATTGCATTTTTTGAAAAGTTTGAGGATCTTTTTGATGCATTTTAAAAGTTCAAGTACCCAAA
TGAGTGAAAAAAAAGTAGGGGC
Found at i:7558335 original size:21 final size:20
Alignment explanation
Indices: 7558291--7558336 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 20
7558281 GTTGGGTTTT
7558291 TATAAAAATAATACAAAAAA
1 TATAAAAATAATACAAAAAA
7558311 -ATAAAAA-AATACCAAAATAA
1 TATAAAAATAATA-CAAAA-AA
7558331 TATAAA
1 TATAAA
7558337 CTTTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 12 0.52
20 2 0.09
21 5 0.22
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.20
Consensus pattern (20 bp):
TATAAAAATAATACAAAAAA
Done.