Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 27 of 214
Found at i:7558894 original size:10 final size:11
Alignment explanation
Indices: 7558867--7558901 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
7558857 TAAAAAAAAG
7558867 TTTATATTATT
1 TTTATATTATT
*
7558878 TTGATATT-TT
1 TTTATATTATT
7558888 TTTATATTATT
1 TTTATATTATT
7558899 TTT
1 TTT
7558902 GTAAAAGACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (11 bp):
TTTATATTATT
Found at i:7566328 original size:27 final size:26
Alignment explanation
Indices: 7566298--7566348 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
7566288 TTTCCATGGG
7566298 TAAAATCATCAAAAATTTTACTAGGAT
1 TAAAATCATC-AAAATTTTACTAGGAT
**
7566325 TAAAATTGTCAAAATTTTACTAGG
1 TAAAATCATCAAAATTTTACTAGG
7566349 GTAAAATAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (26 bp):
TAAAATCATCAAAATTTTACTAGGAT
Found at i:7567929 original size:26 final size:25
Alignment explanation
Indices: 7567882--7567930 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
7567872 TCCAAAAGCA
* *
7567882 TTAATAGTTAATTTGCTTGATTATG
1 TTAATAGTTAATTTGATAGATTATG
7567907 TTAATAGTTAAGTTTGATAGATTA
1 TTAATAGTTAA-TTTGATAGATTA
7567931 AGGGGGAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (25 bp):
TTAATAGTTAATTTGATAGATTATG
Found at i:7573483 original size:16 final size:16
Alignment explanation
Indices: 7573464--7573496 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7573454 TTCATGTTAC
*
7573464 TTTGGTTATCCTTTGT
1 TTTGCTTATCCTTTGT
7573480 TTTGCTTATCCTTTGT
1 TTTGCTTATCCTTTGT
7573496 T
1 T
7573497 ATATTGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.15, G:0.15, T:0.64
Consensus pattern (16 bp):
TTTGCTTATCCTTTGT
Found at i:7575779 original size:33 final size:33
Alignment explanation
Indices: 7575742--7575810 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
7575732 TTTAAATTAT
* * *
7575742 ATTTTATAGTATTATGTATTATGATTTTAGTAA
1 ATTTTATAGTATCATATATTATGATTTGAGTAA
7575775 ATTTTATAGTATCATATATTATGATTTGAGTAA
1 ATTTTATAGTATCATATATTATGATTTGAGTAA
7575808 ATT
1 ATT
7575811 CATATAAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.35, C:0.01, G:0.12, T:0.52
Consensus pattern (33 bp):
ATTTTATAGTATCATATATTATGATTTGAGTAA
Found at i:7575870 original size:16 final size:16
Alignment explanation
Indices: 7575849--7575890 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7575839 TTATTAAATT
*
7575849 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7575865 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7575880 AT-TATGTTTAA
1 ATATAT-TTTAA
7575891 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7575875 original size:15 final size:15
Alignment explanation
Indices: 7575840--7575881 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7575830 TTAAGAATTT
*
7575840 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7575854 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7575868 TATTTAATAATAAT
1 TATTTAATTATAAT
7575882 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7576125 original size:16 final size:16
Alignment explanation
Indices: 7576104--7576138 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
7576094 TTGATTTGCT
*
7576104 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
7576120 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
7576136 ATT
1 ATT
7576139 GTATTGGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:7578315 original size:16 final size:16
Alignment explanation
Indices: 7578281--7578333 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
7578271 ATGACATCAG
7578281 TCATGCAATACTCAAT
1 TCATGCAATACTCAAT
*
7578297 TCATG-AATACATCATT
1 TCATGCAATAC-TCAAT
* *
7578313 TCATACCATACTCAAT
1 TCATGCAATACTCAAT
7578329 TCATG
1 TCATG
7578334 AGTATATAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (16 bp):
TCATGCAATACTCAAT
Found at i:7578567 original size:40 final size:41
Alignment explanation
Indices: 7578523--7578633 Score: 145
Period size: 41 Copynumber: 2.8 Consensus size: 41
7578513 CTAGTTTGGA
* *
7578523 ACCCAGTGCCTCATCGGAT-AATTCGAAGTAGTAAATTGAC
1 ACCCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGAC
* *
7578563 ACCCAGTGTCTTATCGAATAAATCCGAAGTAGTAAATTGAC
1 ACCCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGAC
* * *
7578604 ACCTAGTGTCTCATCGGTTAAA-CTGAAGTA
1 ACCCAGTGTCTCATCGGATAAATCCGAAGTA
7578634 AAGGGCATCC
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 23 0.38
41 38 0.62
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (41 bp):
ACCCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGAC
Found at i:7579543 original size:12 final size:13
Alignment explanation
Indices: 7579523--7579554 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7579513 TTTCTCCTTT
7579523 CTTTCTTTTTTTC
1 CTTTCTTTTTTTC
7579536 CTTT-TTTTTTT-
1 CTTTCTTTTTTTC
7579547 CTTTCTTT
1 CTTTCTTT
7579555 CATTTCTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.22
12 10 0.56
13 4 0.22
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
CTTTCTTTTTTTC
Found at i:7579585 original size:33 final size:28
Alignment explanation
Indices: 7579519--7579587 Score: 75
Period size: 33 Copynumber: 2.3 Consensus size: 28
7579509 TGTCTTTCTC
7579519 CTTTCTTTCTTTTTTTCCTTTTTTTTTT
1 CTTTCTTTCTTTTTTTCCTTTTTTTTTT
*
7579547 CTTTCTTTCATTTCTGTTTCGTTTTGTTTGTTT
1 CTTTCTTTC-TTT-T-TTTCCTTTT-TTT-TTT
*
7579580 GTTTCTTT
1 CTTTCTTT
7579588 ATTCATTTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 9 0.26
29 3 0.09
30 1 0.03
31 8 0.24
32 3 0.09
33 10 0.29
ACGTcount: A:0.01, C:0.16, G:0.07, T:0.75
Consensus pattern (28 bp):
CTTTCTTTCTTTTTTTCCTTTTTTTTTT
Found at i:7579650 original size:20 final size:20
Alignment explanation
Indices: 7579612--7579650 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7579602 TTGTTTTGTT
*
7579612 TTATTATATTTACTTTATTA
1 TTATTATATTTACTATATTA
7579632 TTATTATATTATA-TATATT
1 TTATTATATT-TACTATATT
7579651 TACTTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (20 bp):
TTATTATATTTACTATATTA
Found at i:7586829 original size:37 final size:37
Alignment explanation
Indices: 7586788--7586926 Score: 242
Period size: 37 Copynumber: 3.8 Consensus size: 37
7586778 TTTGAGTACT
7586788 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
7586825 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
7586862 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
7586899 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
7586927 TAGCTTCAGC
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:7586998 original size:45 final size:46
Alignment explanation
Indices: 7586889--7587012 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
7586879 GTGATAAGTG
* *
7586889 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
7586935 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
7586980 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
7587013 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:7589765 original size:15 final size:15
Alignment explanation
Indices: 7589745--7589824 Score: 74
Period size: 15 Copynumber: 5.3 Consensus size: 15
7589735 TTTATGGAAA
7589745 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
7589760 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
7589774 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
7589790 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
7589804 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
7589820 ATCAA
1 ATCAA
7589825 TATAGAAAGT
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
14 9 0.18
15 31 0.63
16 9 0.18
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:7589774 original size:30 final size:30
Alignment explanation
Indices: 7589738--7589850 Score: 185
Period size: 30 Copynumber: 3.8 Consensus size: 30
7589728 ATCCATATTT
*
7589738 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
7589768 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
7589798 TTGGAAAGTCAAAGATATGGGTATC-AAT-
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
7589826 ATAGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
7589851 GAGATATTGG
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 23 0.29
29 3 0.04
30 53 0.67
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:7589810 original size:60 final size:59
Alignment explanation
Indices: 7589739--7589860 Score: 192
Period size: 58 Copynumber: 2.1 Consensus size: 59
7589729 TCCATATTTA
*
7589739 TGGAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATC-AAATAT
1 TGGAAAATCAAAGATATGGGTATC-AAT-ATAGAAAGTCAAAGATATGGGTATCGAAATAT
* *
7589799 TGGAAAGTCAAAGATATGGGTATCAATATAGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAATCAAAGATATGGGTATCAATATAGAAAGTCAAAGATATGGGTATCGAAATAT
7589858 TGG
1 TGG
7589861 CATAATAAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
58 24 0.41
59 11 0.19
60 23 0.40
ACGTcount: A:0.43, C:0.07, G:0.25, T:0.25
Consensus pattern (59 bp):
TGGAAAATCAAAGATATGGGTATCAATATAGAAAGTCAAAGATATGGGTATCGAAATAT
Found at i:7594919 original size:30 final size:30
Alignment explanation
Indices: 7594883--7594945 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
7594873 ATTTATTTTA
7594883 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
7594913 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
7594943 TTG
1 TTG
7594946 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:7596220 original size:13 final size:13
Alignment explanation
Indices: 7596202--7596226 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7596192 AAGGCTTAAA
7596202 ACACACACACACC
1 ACACACACACACC
7596215 ACACACACACAC
1 ACACACACACAC
7596227 ACATACATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (13 bp):
ACACACACACACC
Found at i:7615211 original size:12 final size:13
Alignment explanation
Indices: 7615196--7615262 Score: 56
Period size: 12 Copynumber: 5.6 Consensus size: 13
7615186 TTTAATGAAT
7615196 TTAATATTATAT-
1 TTAATATTATATA
7615208 TTAAT-TTA-ATA
1 TTAATATTATATA
*
7615219 TTGATA-TATATA
1 TTAATATTATATA
* *
7615231 TTAATATGAGATA
1 TTAATATTATATA
*
7615244 TTAA-ATTAAAT-
1 TTAATATTATATA
7615255 TTAATATT
1 TTAATATT
7615263 TATCTAGATA
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
10 2 0.05
11 13 0.30
12 21 0.48
13 8 0.18
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (13 bp):
TTAATATTATATA
Found at i:7615234 original size:18 final size:17
Alignment explanation
Indices: 7615193--7615237 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7615183 TATTTTAATG
*
7615193 AATTTAATATTATATTT
1 AATTTAATATTATATAT
7615210 AATTTAATATTGATATAT
1 AATTTAATATT-ATATAT
7615228 -ATATTAATAT
1 AAT-TTAATAT
7615238 GAGATATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
AATTTAATATTATATAT
Found at i:7618896 original size:16 final size:17
Alignment explanation
Indices: 7618875--7618906 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7618865 TATTGGGTTG
7618875 AGAAAATT-ATTTAATT
1 AGAAAATTAATTTAATT
7618891 AGAAAATTAATTTAAT
1 AGAAAATTAATTTAAT
7618907 AAATAATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
AGAAAATTAATTTAATT
Found at i:7628115 original size:25 final size:25
Alignment explanation
Indices: 7628033--7628112 Score: 81
Period size: 24 Copynumber: 3.2 Consensus size: 25
7628023 TTAAGTATAA
* *
7628033 ATTAAAATTAATTACAAATAATTATT
1 ATTAAAATTAAATAAAAATAATTA-T
* * *
7628059 ATAAAAATTAAATAAAAGT-TTTAT
1 ATTAAAATTAAATAAAAATAATTAT
* *
7628083 ATTAATATTAAATAAAAATAATTGT
1 ATTAAAATTAAATAAAAATAATTAT
7628108 ATTAA
1 ATTAA
7628113 TATAAACTAA
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
24 17 0.40
25 11 0.26
26 15 0.35
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (25 bp):
ATTAAAATTAAATAAAAATAATTAT
Found at i:7628216 original size:25 final size:26
Alignment explanation
Indices: 7628188--7628244 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
7628178 CCCCACCTGC
* *
7628188 CCCTCTCCTC-TCCCCCTACCTCTC-T
1 CCCTCTCCCCTTCCCCCT-CCTCCCGT
7628213 CCCTCTCCCCTTCCCCCTCCTCCCGT
1 CCCTCTCCCCTTCCCCCTCCTCCCGT
7628239 CCCTCT
1 CCCTCT
7628245 GTTATGGTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.02, C:0.67, G:0.02, T:0.30
Consensus pattern (26 bp):
CCCTCTCCCCTTCCCCCTCCTCCCGT
Found at i:7631120 original size:3 final size:3
Alignment explanation
Indices: 7631055--7631102 Score: 78
Period size: 3 Copynumber: 15.7 Consensus size: 3
7631045 TATTTTCTCC
*
7631055 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA GTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
7631101 TT
1 TT
7631103 GGTATTGTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7633598 original size:24 final size:24
Alignment explanation
Indices: 7633571--7633616 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7633561 AAAACAATCC
* *
7633571 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
7633595 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
7633617 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:7634432 original size:13 final size:13
Alignment explanation
Indices: 7634414--7634438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7634404 ATTATTAATA
7634414 TTATTTTGTGTGT
1 TTATTTTGTGTGT
7634427 TTATTTTGTGTG
1 TTATTTTGTGTG
7634439 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:7636136 original size:41 final size:41
Alignment explanation
Indices: 7636091--7636252 Score: 245
Period size: 41 Copynumber: 4.0 Consensus size: 41
7636081 AAATTATTCA
*
7636091 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAATCG
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCG
* * *
7636132 GACTATACGTCTATCAGGCTAAATGCCGGTGAATTGAATCG
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCG
7636173 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCAG
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATC-G
* * *
7636215 G-CTACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAAT
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAAT
7636253 TAAACTATAA
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
41 110 0.98
42 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCG
Found at i:7636265 original size:41 final size:41
Alignment explanation
Indices: 7636088--7636287 Score: 240
Period size: 41 Copynumber: 4.9 Consensus size: 41
7636078 GTGAAATTAT
*
7636088 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * *
7636129 TCGGACTATACGTCTATCAGGCTAAATGCCGGTGAATTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
*
7636170 TCGGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * *
7636211 TCAGGCTACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * * * *
7636252 TTAAACTATAAGCCTATCAGG-TGAAGTGCCAGTGAA
1 TCAGACTATACGTCTAGCAGGCT-AAGTGCCGGTGAA
7636288 TCTGTTTAAA
Statistics
Matches: 141, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 1 0.01
41 140 0.99
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (41 bp):
TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
Found at i:7639185 original size:11 final size:11
Alignment explanation
Indices: 7639171--7639196 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7639161 ATTTTTTTAT
7639171 TTTTAAAATAC
1 TTTTAAAATAC
7639182 TTTTAAAATAC
1 TTTTAAAATAC
7639193 TTTT
1 TTTT
7639197 TTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:7639197 original size:39 final size:39
Alignment explanation
Indices: 7639154--7639283 Score: 176
Period size: 37 Copynumber: 3.4 Consensus size: 39
7639144 ATATAATAAA
* *
7639154 TTTTTTTATTTTTTTATTTTTAAAATACTTTTAAAATAC
1 TTTTTTTAATTTTTTATTTTTAAAATATTTTTAAAATAC
*
7639193 TTTTTTTAATTTTTTTAATTTTT-AAATTTTTTTAAAATAC
1 TTTTTTTAA-TTTTTT-ATTTTTAAAATATTTTTAAAATAC
* *
7639233 --TTTTTAAATTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTTTAATTTTTTATTTTTAAAATATTTTTAAAATAC
7639270 TTTTTTTAATTTTT
1 TTTTTTTAATTTTT
7639284 GTTTTAATTT
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
36 5 0.06
37 21 0.27
38 7 0.09
39 19 0.24
40 21 0.27
41 6 0.08
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (39 bp):
TTTTTTTAATTTTTTATTTTTAAAATATTTTTAAAATAC
Found at i:7639207 original size:9 final size:9
Alignment explanation
Indices: 7639193--7639227 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
7639183 TTTAAAATAC
7639193 TTTTTTTAA
1 TTTTTTTAA
7639202 TTTTTTTAA
1 TTTTTTTAA
*
7639211 -TTTTTAAA
1 TTTTTTTAA
7639219 TTTTTTTAA
1 TTTTTTTAA
7639228 AATACTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:7639220 original size:17 final size:17
Alignment explanation
Indices: 7639194--7639227 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7639184 TTAAAATACT
*
7639194 TTTTTTAATTTTTTTAA
1 TTTTTAAATTTTTTTAA
7639211 TTTTTAAATTTTTTTAA
1 TTTTTAAATTTTTTTAA
7639228 AATACTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTAAATTTTTTTAA
Found at i:7639224 original size:10 final size:10
Alignment explanation
Indices: 7639193--7639245 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
7639183 TTTAAAATAC
7639193 TTTTTTT-AA
1 TTTTTTTAAA
7639202 TTTTTTT-AA
1 TTTTTTTAAA
7639211 --TTTTTAAA
1 TTTTTTTAAA
7639219 TTTTTTTAAAA
1 TTTTTTT-AAA
*
7639230 TACTTTTTAAA
1 T-TTTTTTAAA
7639241 TTTTT
1 TTTTT
7639246 AATTTTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
7 5 0.14
8 2 0.05
9 9 0.24
10 8 0.22
11 8 0.22
12 5 0.14
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:7641026 original size:44 final size:45
Alignment explanation
Indices: 7640947--7642084 Score: 242
Period size: 44 Copynumber: 25.8 Consensus size: 45
7640937 CCTGGACAAC
* ** * * *
7640947 AGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAG-CAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * ** **
7640991 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAGACAGT
* *** * * * * **
7641036 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * ** * *
7641079 AGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAG-CAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * * ** **
7641123 AGTGAAGCAGATCGAAGATGGTGGATTTTACCTCCCTATAGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTA-AGACAGT
* *** * * * * * **
7641168 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTTCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* ** * *
7641211 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG-CAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * * * **
7641255 AGTGGAGCAGATCGAAGATGAC-GAATTTTACCTCCCTGTAGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAG-ATTTTACCTCCCT-AAGACAGT
* * * * **
7641300 AGTGGAGTACATTGAAG-T--CAGTAATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAG--ATTTTACCTCCCTAAGACAGT
* ** * *
7641343 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG-CAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * * ** **
7641387 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAGACAGT
* *** * * * * **
7641432 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* ** * * *
7641475 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG-TAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * * ** **
7641519 AGTGGAGCAGGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTA-GATTGAAGATGGCAGATTTTACCTCCCT-AAGACAGT
* * * *** * * * * **
7641565 GGTGGAGTACATTGTAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* ** * *
7641608 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG-CAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * * ** **
7641652 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAGACAGT
* *** * * * * **
7641697 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* ** * *
7641740 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG-CAGT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * * ** **
7641784 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAGACAGT
* *** * * * * **
7641829 AGTGGAGTACATTGAAGCCAGTA-ATTCTACTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * ** * * *
7641872 AGTGGAATAGATTGAATATTTCAGATCTTATCTCCCTAAG-CAGC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* * * * **
7641916 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTAGTTA-T
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT-AAGACAGT
* ***** * * **
7641961 AGTGGAGTACATTGAAGCCAATA-ATTCTACTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* ** * * *
7642004 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG-CAGC
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
* **
7642048 AGTGGAGTAGATCGAAGATGGTGGATTTTACCTCCCT
1 AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCT
7642085 GTGGTTACAG
Statistics
Matches: 739, Mismatches: 309, Indels: 92
0.65 0.27 0.08
Matches are distributed among these distances:
42 23 0.03
43 125 0.17
44 413 0.56
45 157 0.21
46 19 0.03
47 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (45 bp):
AGTGGAGTAGATTGAAGATGGCAGATTTTACCTCCCTAAGACAGT
Found at i:7641101 original size:132 final size:132
Alignment explanation
Indices: 7640864--7642194 Score: 2256
Period size: 132 Copynumber: 10.1 Consensus size: 132
7640854 TCGACAGCGA
* *
7640864 AGCAGGTCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
7640929 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7640994 GG
131 GG
*
7640996 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
7641061 TCTACTTCCCTGGACAACAGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
*
7641126 GA
131 GG
* * *
7641128 AGCAGATCGAAGATGGTGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
7641193 TCTACTTTCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7641258 GG
131 GG
* * * *
7641260 AGCAGATCGAAGATGACGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGTCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
7641325 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7641390 GG
131 GG
7641392 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
7641457 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGTAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7641522 GG
131 GG
* *
7641524 AGCAGGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATGGTGGAGTACATTGTAGCCAGTAA
1 AGCA-GATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAA
7641589 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
65 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
7641654 TGG
130 TGG
7641657 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
7641722 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7641787 GG
131 GG
7641789 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* *
7641854 TCTACTTCCCTGGACAACAGTGGAATAGATTGAATATTTCAGATCTTATCTCCCTAAGCAGCAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7641919 GG
131 GG
* *
7641921 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* *
7641986 TCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGCAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7642051 GG
131 GG
* * * * *
7642053 AGTAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGCCAGCAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * * * * * * **
7642118 CCTA-TCTCCCTGGTCAGCAGTGAAATAGGTTAAAGA--TAAG-TCTTATCTCCCTGAAGTTGTA
66 TCTACT-TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCT-AAGCAGTA
7642179 GTGG
129 GTGG
* *
7642183 AGTAGATTGAAG
1 AGCAGATCGAAG
7642195 CACTAGTTCC
Statistics
Matches: 1142, Mismatches: 54, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
129 12 0.01
130 23 0.02
131 1 0.00
132 977 0.86
133 129 0.11
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:7642103 original size:661 final size:658
Alignment explanation
Indices: 7640864--7642184 Score: 2295
Period size: 661 Copynumber: 2.0 Consensus size: 658
7640854 TCGACAGCGA
7640864 AGCAGGTCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGGTCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
7640929 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
7640994 GGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTA
131 GGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTA
7641059 ATTCTACTTCCCTGGACAACAGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTA
196 ATTCTACTTCCCTGGACAACAGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTA
*
7641124 GTGAAGCAGATCGAAGATGGTGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCAG
261 GTGAAGCAGATCGAAGATGGCGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCAG
*
7641189 TAATTCTACTTTCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
326 TAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
* *
7641254 TAGTGGAGCAGATCGAAGATGACGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGTC
391 CAGTGGAGCAGATCGAAGATGACGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGCC
* *
7641319 AGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
456 AATAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
* * *
7641384 AGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAG
521 AGCAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAG
* * * * *
7641449 CCAGTAATTCTA-CTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCT-
586 CCAGCAATCCTATC-TCCCTGGACAACAGTGAAATAGATTAAAGA--TAAG-TCTTATCTCCCTG
7641512 AAGTAGTAGTGG
647 AAGTAGTAGTGG
** *
7641524 AGCAGGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATGGTGGAGTACATTGTAGCCAGTAA
1 AGCAGG-TCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAA
*
7641589 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
65 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAG
*
7641654 TGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGT
130 TGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGT
*
7641719 AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
195 AATTCTACTTCCCTGGACAACAGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGT
* * *
7641784 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
260 AGTGAAGCAGATCGAAGATGGCGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCA
*
7641849 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAATATTTCAGATCTTATCTCCCTAAGCA
325 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
* *
7641914 GCAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGC
390 GCAGTGGAGCAGATCGAAGATGACGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGC
7641979 CAATAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG
455 CAATAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAG
* *
7642044 CAGCAGTGGAGTAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAA
520 CAGCAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAA
* * *
7642109 GCCAGCAATCCTATCTCCCTGGTCAGCAGTGAAATAGGTTAAAGATAAGTCTTATCTCCCTGAAG
585 GCCAGCAATCCTATCTCCCTGGACAACAGTGAAATAGATTAAAGATAAGTCTTATCTCCCTGAAG
*
7642174 TTGTAGTGG
650 TAGTAGTGG
7642183 AG
1 AG
7642185 TAGATTGAAG
Statistics
Matches: 626, Mismatches: 32, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
658 12 0.02
659 16 0.03
660 6 0.01
661 591 0.94
662 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (658 bp):
AGCAGGTCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAAATCTTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTA
ATTCTACTTCCCTGGACAACAGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTA
GTGAAGCAGATCGAAGATGGCGGATTTTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCAG
TAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
CAGTGGAGCAGATCGAAGATGACGAATTTTACCTCCCTGTAGTTATAGTGGAGTACATTGAAGCC
AATAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC
AGCAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAG
CCAGCAATCCTATCTCCCTGGACAACAGTGAAATAGATTAAAGATAAGTCTTATCTCCCTGAAGT
AGTAGTGG
Found at i:7645986 original size:19 final size:19
Alignment explanation
Indices: 7645959--7645997 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7645949 TGCTTAGAAC
7645959 TAAACTGATTCAACCACTA
1 TAAACTGATTCAACCACTA
*
7645978 TAAATTGATTCAACCACTA
1 TAAACTGATTCAACCACTA
7645997 T
1 T
7645998 CACATTTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (19 bp):
TAAACTGATTCAACCACTA
Found at i:7652417 original size:36 final size:35
Alignment explanation
Indices: 7652325--7652417 Score: 123
Period size: 35 Copynumber: 2.6 Consensus size: 35
7652315 ACTCTCTATT
* * *
7652325 TTGGTGTGTTTTGGTTAGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTTGGTTAGATTGGCTCTTATGAACA
* * *
7652360 TTGGTGTGTTTCGGATGGATTGGCTCTTATGAACA
1 TTGGTGTGTTTTGGTTAGATTGGCTCTTATGAACA
7652395 TCTGGTGTGTTTTGGTTAGATTG
1 T-TGGTGTGTTTTGGTTAGATTG
7652418 TCGATGTACT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
35 30 0.62
36 18 0.38
ACGTcount: A:0.15, C:0.10, G:0.31, T:0.44
Consensus pattern (35 bp):
TTGGTGTGTTTTGGTTAGATTGGCTCTTATGAACA
Found at i:7653123 original size:19 final size:19
Alignment explanation
Indices: 7653095--7653169 Score: 105
Period size: 19 Copynumber: 3.8 Consensus size: 19
7653085 AATTTTTGAG
*
7653095 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
7653114 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
7653133 GATATATGCAATCTTAGATAT
1 GATATA--CAATCTTAGATAT
**
7653154 GATATGTAATCTTAGA
1 GATATACAATCTTAGA
7653170 AGATATGACT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 33 0.65
21 18 0.35
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:7653144 original size:21 final size:21
Alignment explanation
Indices: 7653096--7653158 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
7653086 ATTTTTGAGG
7653096 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
7653117 ATA--CAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
7653136 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
7653157 AT
1 AT
7653159 GTAATCTTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
19 19 0.47
21 21 0.52
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:7653823 original size:25 final size:26
Alignment explanation
Indices: 7653780--7653829 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
7653770 CACATATATA
7653780 TATATATTTTTAAACGAATATTTTCC
1 TATATATTTTTAAACGAATATTTTCC
* *
7653806 TATAT-TTTTTTAATGAATATTTTC
1 TATATATTTTTAAACGAATATTTTC
7653830 ATATTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (26 bp):
TATATATTTTTAAACGAATATTTTCC
Found at i:7654605 original size:98 final size:98
Alignment explanation
Indices: 7654493--7654687 Score: 327
Period size: 98 Copynumber: 2.0 Consensus size: 98
7654483 TTAAAAATAA
* **
7654493 TAAAGGAAATATTCCGAATTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTAGGTGTGATTTC
1 TAAAGGAAATATTCCGAATTTGGGATTCTAAAGGAATCATGCCCTAACGTATTAGGTGTGATTTC
7654558 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
** * *
7654591 TAAAGGAAATATTCCGGGTTTGGGATTCTAGAGGAATCATGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAATTTGGGATTCTAAAGGAATCATGCCCTAACGTATTAGGTGTGATTTC
7654656 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
7654688 ATTTTATTGT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAATTTGGGATTCTAAAGGAATCATGCCCTAACGTATTAGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:7656249 original size:19 final size:20
Alignment explanation
Indices: 7656225--7656271 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
7656215 GGGTTTTATT
7656225 TTATTTTATATTAATAT-AA
1 TTATTTTATATTAATATAAA
*
7656244 TTATTTAATATTAATATAAA
1 TTATTTTATATTAATATAAA
7656264 TT-TTTTAT
1 TTATTTTAT
7656272 TTATTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTATTTTATATTAATATAAA
Found at i:7656321 original size:19 final size:20
Alignment explanation
Indices: 7656268--7656309 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7656258 TATAAATTTT
**
7656268 TTATTTATTTTTTATAATAA
1 TTATTTATAATTTATAATAA
7656288 TTATTTATAATTTAT-ATAA
1 TTATTTATAATTTATAATAA
7656307 TTA
1 TTA
7656310 ATTTTACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTTATAATTTATAATAA
Found at i:7664741 original size:7 final size:7
Alignment explanation
Indices: 7664724--7664755 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
7664714 TTCCAAATTT
7664724 TTAAT-A
1 TTAATAA
7664730 TTAATAA
1 TTAATAA
7664737 TTAATAA
1 TTAATAA
7664744 TTAATAA
1 TTAATAA
7664751 TTAAT
1 TTAAT
7664756 TTATTTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TTAATAA
Found at i:7665310 original size:19 final size:19
Alignment explanation
Indices: 7665282--7665344 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
7665272 CAAAAAAATC
*
7665282 AAAATAAATTTCAAAAATTT
1 AAAAT-AATTTTAAAAATTT
*
7665302 AAAATAATTTTTAAAATTT
1 AAAATAATTTTAAAAATTT
7665321 AAAAT-ATTTATAAAAATTT
1 AAAATAATTT-TAAAAATTT
*
7665340 TAAAT
1 AAAAT
7665345 TTTGTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
18 4 0.11
19 29 0.76
20 5 0.13
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATAATTTTAAAAATTT
Found at i:7665329 original size:28 final size:28
Alignment explanation
Indices: 7665287--7665340 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
7665277 AAATCAAAAT
7665287 AAATTTCAAAAATTTA-AAATAATTTTTA
1 AAATTTCAAAAATTTATAAA-AATTTTTA
7665315 AAATTT-AAAATATTTATAAAAATTTT
1 AAATTTCAAAA-ATTTATAAAAATTTT
7665341 AAATTTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 4 0.17
28 17 0.71
29 3 0.12
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (28 bp):
AAATTTCAAAAATTTATAAAAATTTTTA
Found at i:7665343 original size:9 final size:9
Alignment explanation
Indices: 7665287--7665343 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
7665277 AAATCAAAAT
*
7665287 AAATTTCAA
1 AAATTTTAA
*
7665296 AAATTTAAA
1 AAATTTTAA
*
7665305 ATAATTTTTA
1 A-AATTTTAA
7665315 AAA-TTTAA
1 AAATTTTAA
7665323 AATATTTATAA
1 AA-ATTT-TAA
7665334 AAATTTTAA
1 AAATTTTAA
7665343 A
1 A
7665344 TTTTGTATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
8 6 0.15
9 16 0.40
10 13 0.32
11 5 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (9 bp):
AAATTTTAA
Found at i:7665403 original size:29 final size:29
Alignment explanation
Indices: 7665371--7665429 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
7665361 TAAATGATTT
7665371 TTTTTTAAAAATCTAAAAAA-TATATAAAA
1 TTTTTTAAAAAT-TAAAAAATTATATAAAA
* *
7665400 TTTTTTGAAAATTAAAAAATTTTATAAAA
1 TTTTTTAAAAATTAAAAAATTATATAAAA
7665429 T
1 T
7665430 AATAATTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (29 bp):
TTTTTTAAAAATTAAAAAATTATATAAAA
Found at i:7665752 original size:21 final size:21
Alignment explanation
Indices: 7665728--7665767 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7665718 ACCTTATCTA
*
7665728 AAGTTAAAAGTCAAAACTATT
1 AAGTTAAAAGGCAAAACTATT
7665749 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAGGCAAAACTA
7665768 CGTTGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.10, G:0.12, T:0.23
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATT
Found at i:7666189 original size:9 final size:8
Alignment explanation
Indices: 7666175--7666213 Score: 51
Period size: 9 Copynumber: 4.5 Consensus size: 8
7666165 ATTGTGTTAT
7666175 TTTTCTCTC
1 TTTTCT-TC
7666184 TTTTCTTC
1 TTTTCTTC
7666192 TTTTTCTTC
1 -TTTTCTTC
7666201 TTCTTCTTC
1 TT-TTCTTC
7666210 TTTT
1 TTTT
7666214 TTTTTTCACC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 6 0.21
9 22 0.79
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTCTTC
Found at i:7666197 original size:18 final size:18
Alignment explanation
Indices: 7666174--7666214 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
7666164 TATTGTGTTA
7666174 TTTTTCTCTCTT-TTCTTC
1 TTTTTCT-TCTTCTTCTTC
7666192 TTTTTCTTCTTCTTCTTC
1 TTTTTCTTCTTCTTCTTC
7666210 TTTTT
1 TTTTT
7666215 TTTTTCACCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTCTTCTTCTTCTTC
Found at i:7668728 original size:91 final size:90
Alignment explanation
Indices: 7668571--7668780 Score: 266
Period size: 91 Copynumber: 2.3 Consensus size: 90
7668561 ACTGATAGTT
* * * * * *
7668571 TTAA-CTACAAACACTAGTGGTTTATCCATAA-AT-TACTGGCAGCTTTCATCTGTAAAACCGTT
1 TTAACCTAC-AACACTTGTGGTATATCCACAACTTATACTGGCAACTTTCATCTGCAAAACCGTT
* *
7668633 GTGTATTCACAACTACTAGCAACATA
65 GTGTATTCACAAATACTAACAACATA
* *
7668659 TTAACCTACAAGCATTTGTGGTATATCCACAACTTATACTGGCAACTATT-ATCTGCAAACCCGT
1 TTAACCTACAA-CACTTGTGGTATATCCACAACTTATACTGGCAACT-TTCATCTGCAAAACCGT
7668723 TGTGTATTCACAAATACTAACAACATA
64 TGTGTATTCACAAATACTAACAACATA
*
7668750 TTAACCTACAACACTTGTGGTTTATCCACAA
1 TTAACCTACAACACTTGTGGTATATCCACAA
7668781 TATAAAGTGT
Statistics
Matches: 105, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
88 6 0.06
89 20 0.19
90 19 0.18
91 58 0.55
92 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (90 bp):
TTAACCTACAACACTTGTGGTATATCCACAACTTATACTGGCAACTTTCATCTGCAAAACCGTTG
TGTATTCACAAATACTAACAACATA
Found at i:7669573 original size:331 final size:331
Alignment explanation
Indices: 7668971--7669946 Score: 1916
Period size: 331 Copynumber: 2.9 Consensus size: 331
7668961 GTTATTACAT
7668971 ATGCTTGGATTATTATTTGGCACTGATTCATGTGATGGAATTCACACTGAGCGTCACAGCTTACT
1 ATGCTTGGATTATTATTTGGCACTGATTCATGTGATGGAATTCACACTGAGCGTCACAGCTTACT
7669036 CTCCCTTTAATTTTCATCATTACAGATAACCTATCAATTTAAGACTCAGATGCGACATCCAGAGG
66 CTCCCTTTAATTTTCATCATTACAGATAACCTATCAATTTAAGACTCAGATGCGACATCCAGAGG
*
7669101 GCCTCGGCTCGATTTCTAATTACAAAATTATTTTAGGTTCATTATATGATTTATTATGTTATTCG
131 GCCTCGGCTCGATTTCTAATTACAAAATTATTTTAGGTTCATTATATGATTTATTATATTATTCG
7669166 AGTACTGTAATATTTTACTATAAACTGTGGCATAGGACTTAAGGTTTTGATTTTATTTTGTATTA
196 AGTACTGTAATATTTTACTATAAACTGTGGCATAGGACTTAAGGTTTTGATTTTATTTTGTATTA
7669231 CACTTAATTTATTCAGGATAATAATAGATGATTATTAATAAGCTATGCATGAAATTCATGTGATT
261 CACTTAATTTATTCAGGATAATAATAGATGATTATTAATAAGCTATGCATGAAATTCATGTGATT
7669296 CATGTG
326 CATGTG
*
7669302 ATGCTTGGATTATTATTTGGCACTAATTCATGTGATGGAATTCACACTGAGCGTCACAGCTTACT
1 ATGCTTGGATTATTATTTGGCACTGATTCATGTGATGGAATTCACACTGAGCGTCACAGCTTACT
7669367 CTCCCTTTAATTTTCATCATTACAGATAACCTATCAATTTAAGACTCAGATGCGACATCCAGAGG
66 CTCCCTTTAATTTTCATCATTACAGATAACCTATCAATTTAAGACTCAGATGCGACATCCAGAGG
7669432 GCCTCGGCTCGATTTCTAATTACAAAATTATTTTAGGTTCATTATATGATTTATTATATTATTCG
131 GCCTCGGCTCGATTTCTAATTACAAAATTATTTTAGGTTCATTATATGATTTATTATATTATTCG
7669497 AGTACTGTAATATTTTACTATAAACTGTGGCATAGGACTTAAGGTTTTGATTTTATTTTGTATTA
196 AGTACTGTAATATTTTACTATAAACTGTGGCATAGGACTTAAGGTTTTGATTTTATTTTGTATTA
*
7669562 CACTTAATTTATTTAGGATAATAATAGATGATTATTAATAAGCTATGCATGAAATTCATGTGATT
261 CACTTAATTTATTCAGGATAATAATAGATGATTATTAATAAGCTATGCATGAAATTCATGTGATT
7669627 CATGTG
326 CATGTG
7669633 ATGCTTGGATTATTATTTGGCACTGATTCATGTGATGGAATTCACACTGAGCGTCACAGCTTACT
1 ATGCTTGGATTATTATTTGGCACTGATTCATGTGATGGAATTCACACTGAGCGTCACAGCTTACT
7669698 CTCCCTTTAATTTTCATCATTACAGATAACCTATCAATTTAAGACTCAGATGCGACATCCAGAGG
66 CTCCCTTTAATTTTCATCATTACAGATAACCTATCAATTTAAGACTCAGATGCGACATCCAGAGG
7669763 GCCTCGGCTCGATTTCTAATTACAAAATTATTTTAGGTTCATTATATGATTTATTATATTATTCG
131 GCCTCGGCTCGATTTCTAATTACAAAATTATTTTAGGTTCATTATATGATTTATTATATTATTCG
7669828 AGTACTGTAATATTTTACTATAAACTGTGGCATAGGACTTAAGGTTTTGATTTTATTTTGTATTA
196 AGTACTGTAATATTTTACTATAAACTGTGGCATAGGACTTAAGGTTTTGATTTTATTTTGTATTA
*
7669893 CACTTAATTTATTCAAGATAATAATAGATGATTATTAATAAGCTATGCATGAAA
261 CACTTAATTTATTCAGGATAATAATAGATGATTATTAATAAGCTATGCATGAAA
7669947 CCCCAGGTTT
Statistics
Matches: 639, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
331 639 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (331 bp):
ATGCTTGGATTATTATTTGGCACTGATTCATGTGATGGAATTCACACTGAGCGTCACAGCTTACT
CTCCCTTTAATTTTCATCATTACAGATAACCTATCAATTTAAGACTCAGATGCGACATCCAGAGG
GCCTCGGCTCGATTTCTAATTACAAAATTATTTTAGGTTCATTATATGATTTATTATATTATTCG
AGTACTGTAATATTTTACTATAAACTGTGGCATAGGACTTAAGGTTTTGATTTTATTTTGTATTA
CACTTAATTTATTCAGGATAATAATAGATGATTATTAATAAGCTATGCATGAAATTCATGTGATT
CATGTG
Found at i:7677347 original size:45 final size:44
Alignment explanation
Indices: 7677297--7677480 Score: 269
Period size: 45 Copynumber: 4.1 Consensus size: 44
7677287 TAACGGTAGC
* *
7677297 AGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAACAGTAAT
1 AGTAACAGTATTCGACACACAAAGTGCCGAATC-GTAACAGTAAT
* *
7677342 GGTAACAGTATTCGACACACAAAGTGCCGAATCGATAACAGTAAC
1 AGTAACAGTATTCGACACACAAAGTGCCGAATCG-TAACAGTAAT
*
7677387 AGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTAAT
1 AGTAACAGTATTCGACACACAAAGTGCCGAATC-GTAACAGTAAT
* *
7677432 AGTAACAGTATTTGACACACAAAGTGCCGAATCAGTAACAGTAAC
1 AGTAACAGTATTCGACACACAAAGTGCCGAATC-GTAACAGTAAT
7677477 AGTA
1 AGTA
7677481 GTCGGCACAT
Statistics
Matches: 126, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
44 1 0.01
45 124 0.98
46 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (44 bp):
AGTAACAGTATTCGACACACAAAGTGCCGAATCGTAACAGTAAT
Found at i:7677386 original size:39 final size:42
Alignment explanation
Indices: 7677296--7677502 Score: 188
Period size: 45 Copynumber: 4.8 Consensus size: 42
7677286 GTAACGGTAG
* * *
7677296 CAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAACAGTAA
1 CAGTAACAGTATTCGACACACAAAGTGCCGAATC-G-GA-AGTAA
** *
7677341 TGGTAACAGTATTCGACACACAAAGTGCCGAATCGATAACAGTAA
1 CAGTAACAGTATTCGACACACAAAGTGCCGAATCG--GA-AGTAA
*
7677386 CAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTAA
1 CAGTAACAGTATTCGACACACAAAGTGCCGAATCGG--A-AGTAA
* *
7677431 TAGTAACAGTATTTGACACACAAAGTGCCGAATC---AGTAA
1 CAGTAACAGTATTCGACACACAAAGTGCCGAATCGGAAGTAA
* * * *
7677470 CAGTAACAGTAGTCGGCACA-TAAGTGCCTAATC
1 CAGTAACAGTATTCGACACACAAAGTGCCGAATC
7677503 AGTAAGCCGG
Statistics
Matches: 142, Mismatches: 17, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
38 11 0.08
39 21 0.15
44 1 0.01
45 109 0.77
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (42 bp):
CAGTAACAGTATTCGACACACAAAGTGCCGAATCGGAAGTAA
Found at i:7677425 original size:90 final size:90
Alignment explanation
Indices: 7677281--7677480 Score: 312
Period size: 90 Copynumber: 2.2 Consensus size: 90
7677271 AGTATACAGT
* * * * *
7677281 AATCAGTAACGGTAGCAGTAACAGTATTCAACACACAAAGTGCTGAATCTGTAACAGTAATGGTA
1 AATCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGGTAACAGTAATAGTA
7677346 ACAGTATTCGACACACAAAGTGCCG
66 ACAGTATTCGACACACAAAGTGCCG
* *
7677371 AATC-GATAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTAATAGT
1 AATCAG-TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGGTAACAGTAATAGT
*
7677435 AACAGTATTTGACACACAAAGTGCCG
65 AACAGTATTCGACACACAAAGTGCCG
7677461 AATCAGTAACAGTAACAGTA
1 AATCAGTAACAGTAACAGTA
7677481 GTCGGCACAT
Statistics
Matches: 100, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
89 1 0.01
90 98 0.98
91 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (90 bp):
AATCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGGTAACAGTAATAGTA
ACAGTATTCGACACACAAAGTGCCG
Found at i:7689927 original size:32 final size:32
Alignment explanation
Indices: 7689886--7689948 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
7689876 GTGAAGTGAC
7689886 AATTTAAAAATTGGTATAATAATAAATTTAGT
1 AATTTAAAAATTGGTATAATAATAAATTTAGT
7689918 AATTTAAAAATTGGTATAATAATAAATTTAG
1 AATTTAAAAATTGGTATAATAATAAATTTAG
7689949 CTCATAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.40
Consensus pattern (32 bp):
AATTTAAAAATTGGTATAATAATAAATTTAGT
Found at i:7694138 original size:37 final size:37
Alignment explanation
Indices: 7694097--7694172 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
7694087 CCCAAACCTT
7694097 AAACCAAACCCAATACCCTAAAACAGACCTAACCCAA
1 AAACCAAACCCAATACCCTAAAACAGACCTAACCCAA
7694134 AAACCAAACCCAATACCCTAAAACAGACCTAACCCAA
1 AAACCAAACCCAATACCCTAAAACAGACCTAACCCAA
7694171 AA
1 AA
7694173 CAATAAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.53, C:0.37, G:0.03, T:0.08
Consensus pattern (37 bp):
AAACCAAACCCAATACCCTAAAACAGACCTAACCCAA
Found at i:7694210 original size:20 final size:21
Alignment explanation
Indices: 7694164--7694210 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
7694154 AAACAGACCT
*
7694164 AACCCAAAACAATAAAATTAC
1 AACCCAAAACAATAAAATTAA
*
7694185 AGCCCAAAA-AGA-AAAATTAA
1 AACCCAAAACA-ATAAAATTAA
7694205 AACCCA
1 AACCCA
7694211 GCCCAAAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.62, C:0.23, G:0.04, T:0.11
Consensus pattern (21 bp):
AACCCAAAACAATAAAATTAA
Found at i:7695301 original size:15 final size:16
Alignment explanation
Indices: 7695278--7695310 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7695268 TTTGTTTTAA
7695278 ATTTATATATATTATT
1 ATTTATATATATTATT
7695294 ATTT-TATATATTATT
1 ATTTATATATATTATT
7695309 AT
1 AT
7695311 CTATGTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATTTATATATATTATT
Found at i:7696260 original size:109 final size:111
Alignment explanation
Indices: 7696068--7696365 Score: 510
Period size: 109 Copynumber: 2.7 Consensus size: 111
7696058 AAAGAAAAGT
* *
7696068 ATTTTAAAATAAAGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 ATTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
7696133 TCGATTTTTCTCGTTCAACCAAAGGGCTTAATATCC-TTTT-AAAA
66 TCGATTTTTCTCGTTCAACCAAAGGGCTTAATATCCTTTTTAAAAA
* * *
7696177 TTTTTAAAATAAGGTAATGTTTTGCATTTGGAAATTCGAGAAAACATGTCCTAAGGTGCTGGGTG
1 ATTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
*
7696242 TCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTTAAAAAA
66 TCGATTTTTCTCGTTCAACCAAAGGGCTTAATATCCTTTTT-AAAAA
*
7696289 ATTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
1 ATTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
7696354 TCGATTTTTCTC
66 TCGATTTTTCTC
7696366 ATTTAAACAA
Statistics
Matches: 176, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
109 95 0.54
110 4 0.02
112 77 0.44
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (111 bp):
ATTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
TCGATTTTTCTCGTTCAACCAAAGGGCTTAATATCCTTTTTAAAAA
Found at i:7699635 original size:17 final size:17
Alignment explanation
Indices: 7699613--7699656 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
7699603 CTAAGTTGAT
*
7699613 TAATTAAAATCTCTTTC
1 TAATTAAAACCTCTTTC
7699630 TAATTAAAACCTCTTTC
1 TAATTAAAACCTCTTTC
7699647 TAATTAAAAC
1 TAATTAAAAC
7699657 ACATATTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATTAAAACCTCTTTC
Found at i:7700301 original size:30 final size:30
Alignment explanation
Indices: 7700252--7700308 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
7700242 CACTGGCTGG
*
7700252 CACAAGGGCGTGTGTCCAGCCCGTGTGTCC
1 CACAAGGGCGTGTGCCCAGCCCGTGTGTCC
* *
7700282 CACATGGGTGTGTGCCCAGCCCGTGTG
1 CACAAGGGCGTGTGCCCAGCCCGTGTG
7700309 GCTTCTGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.12, C:0.32, G:0.35, T:0.21
Consensus pattern (30 bp):
CACAAGGGCGTGTGCCCAGCCCGTGTGTCC
Found at i:7706094 original size:135 final size:135
Alignment explanation
Indices: 7705852--7706117 Score: 424
Period size: 135 Copynumber: 2.0 Consensus size: 135
7705842 CCAATTTACT
* * * * *
7705852 TGCAGGGGAAGAGTTTCAACTTTGCTTGGCAGTGATTTCCGAGATACAATGGACCGATTAATGAC
1 TGCAGGGGAAGAGTTTCAACTTTACTTGACAGTGATTTCCGAGAGAAAATGAACCGATTAATGAC
*
7705917 TTCTCGTGTACAAATGCAAGCGGATGGGGCTGAAAGTCAACAAGAAGTGGATGATAAGGAAGGAA
66 TTCTCGTGTACAAATGCAAGCGGATGGGGCTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
7705982 TTATA
131 TTATA
* *
7705987 TGCAGGGGAAGAGTTTCAACTTTATTTGACAGTGATTTCCTAGAGAAAATGAACCGATTAATGAC
1 TGCAGGGGAAGAGTTTCAACTTTACTTGACAGTGATTTCCGAGAGAAAATGAACCGATTAATGAC
* ** *
7706052 TTCTCGTGTACAAATGCAAGCTGATGTTGCTGAAAGTCAACAAGAAGTTGAGGATAAGGAAGGAA
66 TTCTCGTGTACAAATGCAAGCGGATGGGGCTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
7706117 T
131 T
7706118 GGTCCAACCA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
135 119 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.26
Consensus pattern (135 bp):
TGCAGGGGAAGAGTTTCAACTTTACTTGACAGTGATTTCCGAGAGAAAATGAACCGATTAATGAC
TTCTCGTGTACAAATGCAAGCGGATGGGGCTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
TTATA
Found at i:7706148 original size:6 final size:6
Alignment explanation
Indices: 7706137--7706232 Score: 138
Period size: 6 Copynumber: 16.0 Consensus size: 6
7706127 AGTGTCTTAC
*
7706137 GAAGAA GAAGAA GAGGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA
1 GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA
* * * * *
7706185 GAAGAA GAGGAA GAAGAA GAGGAA GAGGAA GAGGAA GAGGAA GAAGAA
1 GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA GAAGAA
7706233 TACGACGATG
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 84 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (6 bp):
GAAGAA
Found at i:7709099 original size:32 final size:32
Alignment explanation
Indices: 7709038--7709099 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
7709028 TTAAAAAGAT
*
7709038 TATAATTGTTTAATAATTCATTGTATTTTTTC
1 TATAATTGTTTAATAATTCATTATATTTTTTC
*
7709070 TATAATTGTTTTAT-ATT-ATTAATATTTTTT
1 TATAATTGTTTAATAATTCATT-ATATTTTTT
7709100 AAAAGATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 3 0.11
31 11 0.41
32 13 0.48
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (32 bp):
TATAATTGTTTAATAATTCATTATATTTTTTC
Found at i:7709158 original size:18 final size:19
Alignment explanation
Indices: 7709135--7709170 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7709125 AAATTTATTG
7709135 TAATTT-TATATTTTTTAA
1 TAATTTATATATTTTTTAA
*
7709153 TAATTTATGTATTTTTTA
1 TAATTTATATATTTTTTA
7709171 TATTTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (19 bp):
TAATTTATATATTTTTTAA
Found at i:7709160 original size:28 final size:28
Alignment explanation
Indices: 7709126--7709180 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
7709116 TTAAAATTTA
7709126 AATTTATTGTA-ATTTTATATTTTTTAAT
1 AATTTA-TGTATATTTTATATTTTTTAAT
*
7709154 AATTTATGTATTTTTTATATTTTTTAA
1 AATTTATGTATATTTTATATTTTTTAA
7709181 GCAGAAGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 4 0.16
28 21 0.84
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (28 bp):
AATTTATGTATATTTTATATTTTTTAAT
Found at i:7710668 original size:12 final size:13
Alignment explanation
Indices: 7710650--7710680 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
7710640 CTCTTTACCC
7710650 CCTTCATACAAGT
1 CCTTCATACAAGT
7710663 -CTTCATACAAGT
1 CCTTCATACAAGT
7710675 CCTTCA
1 CCTTCA
7710681 GGGAGACCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.29, C:0.32, G:0.06, T:0.32
Consensus pattern (13 bp):
CCTTCATACAAGT
Found at i:7715911 original size:26 final size:24
Alignment explanation
Indices: 7715873--7715921 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 24
7715863 TGGCTCAATT
7715873 TTTTATTATAAGTTATTTATGTTA
1 TTTTATTATAAGTTATTTATGTTA
7715897 TTTTATATATAAAGTTATTTATGTT
1 TTTTAT-TAT-AAGTTATTTATGTT
7715922 TGACACCGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 6 0.26
25 3 0.13
26 14 0.61
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (24 bp):
TTTTATTATAAGTTATTTATGTTA
Found at i:7719907 original size:31 final size:31
Alignment explanation
Indices: 7719872--7719932 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
7719862 TATCCTTATG
*
7719872 ACTTAAATAAAAAC-TTCTGAATAGTTCAATA
1 ACTTAAATAAAAACTTTC-GAATAATTCAATA
*
7719903 ACTTAAATGAAAACTTTCGAATAATTCAAT
1 ACTTAAATAAAAACTTTCGAATAATTCAAT
7719933 GATTATTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 24 0.89
32 3 0.11
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.33
Consensus pattern (31 bp):
ACTTAAATAAAAACTTTCGAATAATTCAATA
Found at i:7722713 original size:62 final size:59
Alignment explanation
Indices: 7722609--7722725 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
7722599 ATCACTTTAA
* *
7722609 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCT
* * *
7722668 TATTAAATTGATAGAATATTTATCTATAAGATAAATATTAAATTAATTTTAATATTAA
1 TATTAAATTAATAGAATACTTATC---AAGATAAATATTAAATTAAATTTAATATTAA
7722726 GATAATCAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
62 29 0.58
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (59 bp):
TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAATCT
Found at i:7722751 original size:20 final size:17
Alignment explanation
Indices: 7722701--7722751 Score: 59
Period size: 20 Copynumber: 2.8 Consensus size: 17
7722691 CTATAAGATA
7722701 AATATTAAATTAATTTT
1 AATATTAAATTAATTTT
7722718 AATATTAAGA-TAATCAGTTT
1 AATATTAA-ATTAAT---TTT
7722738 AATATTAAATTAAT
1 AATATTAAATTAAT
7722752 AAAATACTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 12 0.41
18 1 0.03
19 1 0.03
20 15 0.52
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (17 bp):
AATATTAAATTAATTTT
Found at i:7727084 original size:25 final size:25
Alignment explanation
Indices: 7727067--7727121 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
7727057 GCTCGCAATG
7727067 GCTTCCCATTATTCAGCTCACATGA
1 GCTTCCCATTATTCAGCTCACATGA
* *
7727092 GCTTTCCATTATTCAGCTCAAATGA
1 GCTTCCCATTATTCAGCTCACATGA
7727117 GCTTC
1 GCTTC
7727122 TCGTTTACAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.35
Consensus pattern (25 bp):
GCTTCCCATTATTCAGCTCACATGA
Found at i:7742415 original size:15 final size:16
Alignment explanation
Indices: 7742395--7742441 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
7742385 ACCTTCATTC
7742395 ACCAAACACTACAATT
1 ACCAAACACTACAATT
*
7742411 A-CAAAC-CTTC-ATT
1 ACCAAACACTACAATT
7742424 CACCAAACACTACAATT
1 -ACCAAACACTACAATT
7742441 A
1 A
7742442 GAGGGTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
13 3 0.12
14 4 0.16
15 10 0.40
16 5 0.20
17 3 0.12
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (16 bp):
ACCAAACACTACAATT
Found at i:7742416 original size:30 final size:30
Alignment explanation
Indices: 7742382--7742441 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
7742372 CAAATTTTTG
7742382 CAAACCTTCATTCACCAAACACTACAATTA
1 CAAACCTTCATTCACCAAACACTACAATTA
7742412 CAAACCTTCATTCACCAAACACTACAATTA
1 CAAACCTTCATTCACCAAACACTACAATTA
7742442 GAGGGTTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (30 bp):
CAAACCTTCATTCACCAAACACTACAATTA
Found at i:7749571 original size:18 final size:18
Alignment explanation
Indices: 7749529--7749571 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
7749519 ACCCACCCAC
* *
7749529 ATTTTAAGTGTGAATGCT
1 ATTTCAAGTGTGAATACT
*
7749547 -CTTCAAGTGTGAATACT
1 ATTTCAAGTGTGAATACT
7749564 ATTTCAAG
1 ATTTCAAG
7749572 GTTACGGGGG
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.40
Consensus pattern (18 bp):
ATTTCAAGTGTGAATACT
Found at i:7761605 original size:25 final size:23
Alignment explanation
Indices: 7761577--7761669 Score: 71
Period size: 25 Copynumber: 3.8 Consensus size: 23
7761567 AGCTCTAAAG
7761577 AGCCATTAATCAGGAAGCTCCGGA
1 AGCCA-TAATCAGGAAGCTCCGGA
* * * *
7761601 TAGCCATATATCGGGAAGTTCAAGCA
1 -AGCCATA-ATCAGGAAGCTC-CGGA
* *
7761627 AGCTAT-ATCAGGAAGTTCCGGA
1 AGCCATAATCAGGAAGCTCCGGA
7761649 GAGCCATTAATCAGGAAGCTC
1 -AGCCA-TAATCAGGAAGCTC
7761670 ACAAAGAGTC
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
22 2 0.04
23 15 0.28
24 3 0.06
25 31 0.58
26 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (23 bp):
AGCCATAATCAGGAAGCTCCGGA
Found at i:7762027 original size:20 final size:20
Alignment explanation
Indices: 7762002--7762040 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
7761992 ACACTTATAC
7762002 AATTC-ACATATACAATATTA
1 AATTCAACATATA-AATATTA
7762022 AATTCAAACATATAAATAT
1 AATTC-AACATATAAATAT
7762041 ATAATTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 5 0.29
22 7 0.41
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (20 bp):
AATTCAACATATAAATATTA
Found at i:7769348 original size:23 final size:23
Alignment explanation
Indices: 7769317--7769436 Score: 158
Period size: 23 Copynumber: 5.3 Consensus size: 23
7769307 AGTGTTATTG
*
7769317 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
7769340 TTCAATGGTAGCTTCGACTAC--
1 ATCAGTGGTAGCTTCGGCTACAT
7769361 ATCAGTGGTAGCTTCGGCTACACT
1 ATCAGTGGTAGCTTCGGCTACA-T
7769385 -TCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7769407 AAT-AGTGGTAGCTTCGGCTACAT
1 -ATCAGTGGTAGCTTCGGCTACAT
7769430 ATCAGTG
1 ATCAGTG
7769437 TTGCACTTAT
Statistics
Matches: 85, Mismatches: 6, Indels: 12
0.83 0.06 0.12
Matches are distributed among these distances:
21 18 0.21
22 3 0.04
23 63 0.74
24 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7769380 original size:44 final size:44
Alignment explanation
Indices: 7769317--7769428 Score: 161
Period size: 44 Copynumber: 2.5 Consensus size: 44
7769307 AGTGTTATTG
**
7769317 ATCAGTGGTAGCTTCGGCTACGTTTCAATGGTAGCTTCGACTAC
1 ATCAGTGGTAGCTTCGGCTACACTTCAATGGTAGCTTCGACTAC
* *
7769361 ATCAGTGGTAGCTTCGGCTACACTTCAGTGGTAGCTTCGGCTAC
1 ATCAGTGGTAGCTTCGGCTACACTTCAATGGTAGCTTCGACTAC
*
7769405 ATAATAGTGGTAGCTTCGGCTACA
1 AT--CAGTGGTAGCTTCGGCTACA
7769429 TATCAGTGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 42 0.69
46 19 0.31
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.30
Consensus pattern (44 bp):
ATCAGTGGTAGCTTCGGCTACACTTCAATGGTAGCTTCGACTAC
Found at i:7772786 original size:21 final size:21
Alignment explanation
Indices: 7772762--7772828 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
7772752 TGTTTTACTG
7772762 TCTGTTAAGCTCTTACGAGCT
1 TCTGTTAAGCTCTTACGAGCT
*
7772783 TCTGTTTAGCTCTTACGAGCT
1 TCTGTTAAGCTCTTACGAGCT
* * *
7772804 TCTATTCAGCT-TT-CAAGCT
1 TCTGTTAAGCTCTTACGAGCT
7772823 TCTGTT
1 TCTGTT
7772829 GCGTATTCGG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
19 10 0.24
20 2 0.05
21 29 0.71
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.43
Consensus pattern (21 bp):
TCTGTTAAGCTCTTACGAGCT
Found at i:7773345 original size:23 final size:21
Alignment explanation
Indices: 7773310--7773351 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
7773300 ACCAACTTAC
7773310 ATATTGGTATGAGAATGAGGT
1 ATATTGGTATGAGAATGAGGT
*
7773331 ATATTGTGATATGAGTATGAG
1 ATATTG-G-TATGAGAATGAG
7773352 TGTTATACGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (21 bp):
ATATTGGTATGAGAATGAGGT
Found at i:7773683 original size:30 final size:30
Alignment explanation
Indices: 7773647--7773717 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 30
7773637 GCGTGTGTCT
*
7773647 CAGCCGTGTGTGACACACAGCCAAGTGACA
1 CAGCCGTGTGTGACAAACAGCCAAGTGACA
*
7773677 CGGCCGTGTGTGACAAACAGCCAAGTGACA
1 CAGCCGTGTGTGACAAACAGCCAAGTGACA
7773707 CAGCCGTGTGT
1 CAGCCGTGTGT
7773718 CCCCTGTATC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.27, C:0.28, G:0.30, T:0.15
Consensus pattern (30 bp):
CAGCCGTGTGTGACAAACAGCCAAGTGACA
Found at i:7773866 original size:128 final size:128
Alignment explanation
Indices: 7773703--7773976 Score: 530
Period size: 128 Copynumber: 2.1 Consensus size: 128
7773693 ACAGCCAAGT
* *
7773703 GACACAGCCGTGTGTCCCCTGTATCTTTTAAGAATACAAGTCAGTATGCTCACATAACCTGGCAC
1 GACACGGCCATGTGTCCCCTGTATCTTTTAAGAATACAAGTCAGTATGCTCACATAACCTGGCAC
7773768 ACGGGCGTGTGACTTAGCCATGTGACCCATGTCAGAGAGTTACACGGGTACGGACTCGGGCTA
66 ACGGGCGTGTGACTTAGCCATGTGACCCATGTCAGAGAGTTACACGGGTACGGACTCGGGCTA
7773831 GACACGGCCATGTGTCCCCTGTATCTTTTAAGAATACAAGTCAGTATGCTCACATAACCTGGCAC
1 GACACGGCCATGTGTCCCCTGTATCTTTTAAGAATACAAGTCAGTATGCTCACATAACCTGGCAC
7773896 ACGGGCGTGTGACTTAGCCATGTGACCCATGTCAGAGAGTTACACGGGTACGGACTCGGGCTA
66 ACGGGCGTGTGACTTAGCCATGTGACCCATGTCAGAGAGTTACACGGGTACGGACTCGGGCTA
7773959 GACACGGCCATGTGTCCC
1 GACACGGCCATGTGTCCC
7773977 TATTTCGAAT
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
128 144 1.00
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (128 bp):
GACACGGCCATGTGTCCCCTGTATCTTTTAAGAATACAAGTCAGTATGCTCACATAACCTGGCAC
ACGGGCGTGTGACTTAGCCATGTGACCCATGTCAGAGAGTTACACGGGTACGGACTCGGGCTA
Found at i:7778580 original size:51 final size:51
Alignment explanation
Indices: 7778500--7778661 Score: 279
Period size: 51 Copynumber: 3.2 Consensus size: 51
7778490 CTGATCAGTA
* * *
7778500 ACAAGTGATAAGTTGTAGCTTTAGCTACACTTATCTAATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
* *
7778551 ACAAGTAATAAGTGGTAACTTTAGTTACACTTATCTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
7778602 ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
1 ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
7778653 ACAAGTGAT
1 ACAAGTGAT
7778662 GTGATATGTG
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 104 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (51 bp):
ACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATCAGTGACAAGTG
Found at i:7779575 original size:19 final size:19
Alignment explanation
Indices: 7779551--7779661 Score: 168
Period size: 19 Copynumber: 5.8 Consensus size: 19
7779541 AATCTTAAGG
7779551 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7779570 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
7779589 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7779608 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
** *
7779627 GATATATAATCTTAGATTT
1 GATATGCAATCTTAGATAT
7779646 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
7779662 AGATATGATT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 81 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7779602 original size:38 final size:38
Alignment explanation
Indices: 7779558--7779661 Score: 190
Period size: 38 Copynumber: 2.7 Consensus size: 38
7779548 AGGGATATGC
7779558 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
7779596 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
7779634 AATCTTAGATTTGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
7779662 AGATATGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:7786747 original size:132 final size:132
Alignment explanation
Indices: 7786499--7787530 Score: 1710
Period size: 132 Copynumber: 7.8 Consensus size: 132
7786489 CTGCATTGAC
* *
7786499 AGTGAAGCAGATCGAAGATGGCGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
*
7786564 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCTCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
7786629 GT
131 GT
*
7786631 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
*
7786696 GTAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATTTC-GAATCTTATCTCCCTAAGC
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAG-ATCTTATCTCCCTAAGC
7786760 AGT
130 AGT
* * *
7786763 AGTGGAGTAGATCGAAGATGGCGGATTTTATCTCCCTGTGGTTACAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
7786828 GTAATTCTACTTCCCTGAACAACAGTGGAATAGATTGAAAATTTTAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
7786893 GT
131 GT
* * * *
7786895 AGTGGAGTAGATCGAAAATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTATATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
7786960 GTAATTCTACTTCCCTGGACAATAGTGGAATAGATTGAAGATTTCAGGTCTTATATCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
7787025 GT
131 GT
7787027 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
7787092 GTAATTCTACTTCCCTGGACAACAATGGAATAGATTGAAGATTTCAGGTCTTATCTCCCTAAGAA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
7787157 GT
131 GT
*
7787159 AGTGGAGCAGATCGAAGATGACGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
*
7787224 GTAATTCTACTTCCCTGGACAACAGTGGAATAAATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
7787289 GT
131 GT
* *
7787291 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTATATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
7787356 GTAATTCTACTTCCCTAGACAACAGTAGAATGGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
7787421 GT
131 GT
*
7787423 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTCTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * * *
7787488 GTAA-CCATA-TCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATT
66 GTAATTC-TACT-TCCCTGGACAACAGTGGAATAGATTGAAGATT
7787531 GTAAGTCCTA
Statistics
Matches: 841, Mismatches: 55, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
131 3 0.00
132 837 1.00
133 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
GT
Found at i:7787884 original size:19 final size:19
Alignment explanation
Indices: 7787856--7787985 Score: 188
Period size: 19 Copynumber: 6.8 Consensus size: 19
7787846 AATCTTCAGG
*
7787856 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
7787875 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
* * *
7787894 AATGTATAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
7787913 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
7787932 GATATATAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
7787951 GATATATAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
7787970 GATATGCAATCTTAGA
1 GATATACAATCTTAGA
7787986 AGATATGATT
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 99 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.38
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:7787923 original size:57 final size:57
Alignment explanation
Indices: 7787856--7787985 Score: 233
Period size: 57 Copynumber: 2.3 Consensus size: 57
7787846 AATCTTCAGG
*
7787856 GATATGCAATCTTAGATATGATATACAATCTTAGATATAATGTATAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATACAATCTTAGATATAATATATAATCTTAGATAT
* *
7787913 GATATGCAATCTTAGATATGATATATAATCTTAGATATGATATATAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATACAATCTTAGATATAATATATAATCTTAGATAT
7787970 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
7787986 AGATATGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 70 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.38
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATACAATCTTAGATATAATATATAATCTTAGATAT
Found at i:7788011 original size:22 final size:21
Alignment explanation
Indices: 7787856--7788011 Score: 113
Period size: 19 Copynumber: 7.9 Consensus size: 21
7787846 AATCTTCAGG
*
7787856 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
** *
7787875 GATATACAATCTTAGATATAAT
1 GATATGTAATCTTAGAGAT-AT
7787897 G-TA--TAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7787913 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7787932 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7787951 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7787970 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
7787992 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
7788012 TTAATTTGTA
Statistics
Matches: 116, Mismatches: 11, Indels: 17
0.81 0.08 0.12
Matches are distributed among these distances:
16 3 0.03
17 5 0.04
19 77 0.66
21 5 0.04
22 15 0.13
23 11 0.09
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:7790007 original size:27 final size:27
Alignment explanation
Indices: 7789948--7790012 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
7789938 TCTGACTTGG
*
7789948 AATCAA-TCC-AAAATAATAGAGAATC
1 AATCAATTCCAAAAAGAATAGAGAATC
* *
7789973 AATTAATTCCAAAAAGAATAGA-AACTT
1 AATCAATTCCAAAAAGAATAGAGAA-TC
7790000 AATCAATTTCCAA
1 AATCAA-TTCCAA
7790013 TGATTTGACA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
25 5 0.16
26 5 0.16
27 16 0.50
28 6 0.19
ACGTcount: A:0.54, C:0.15, G:0.06, T:0.25
Consensus pattern (27 bp):
AATCAATTCCAAAAAGAATAGAGAATC
Found at i:7792537 original size:44 final size:44
Alignment explanation
Indices: 7792474--7792561 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
7792464 TTTTACCTCC
*
7792474 TACGTTCACCCTACCCATGAGAATTATGAAGTGGAGACAAGTGT
1 TACGTTCACCCTACCCATGACAATTATGAAGTGGAGACAAGTGT
*
7792518 TACGTTCACCC-AGCTCATGACAATTATGAAGTGGAGACAAGTGT
1 TACGTTCACCCTA-CCCATGACAATTATGAAGTGGAGACAAGTGT
7792562 ATGTACCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 1 0.02
44 40 0.98
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (44 bp):
TACGTTCACCCTACCCATGACAATTATGAAGTGGAGACAAGTGT
Found at i:7796027 original size:16 final size:16
Alignment explanation
Indices: 7796006--7796039 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7795996 TGTAATTATG
* *
7796006 TAAATATTATTAAAAT
1 TAAATAATAGTAAAAT
7796022 TAAATAATAGTAAAAT
1 TAAATAATAGTAAAAT
7796038 TA
1 TA
7796040 CCGAATATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
TAAATAATAGTAAAAT
Found at i:7796330 original size:31 final size:29
Alignment explanation
Indices: 7796282--7796361 Score: 79
Period size: 31 Copynumber: 2.7 Consensus size: 29
7796272 ATACTAAAAC
* * *
7796282 TATACATTAACTATGATTTAATGTGTAAATG
1 TATACATGAACTTTGATTT--TGTGCAAATG
* *
7796313 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATGAACTTTGATTTTGTGCAAATG
*
7796342 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
7796362 GATCCAATTC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 15 0.36
30 10 0.24
31 17 0.40
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.46
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTGCAAATG
Found at i:7796362 original size:29 final size:31
Alignment explanation
Indices: 7796313--7796376 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
7796303 TGTGTAAATG
*
7796313 TATACATGAACTTTGATTTTG-TGCAATT-T
1 TATACATGAACTTTGATTTTGATCCAATTCT
*
7796342 TATACATGAAATTTTGA-TTTGATCCAATTCT
1 TATACATG-AACTTTGATTTTGATCCAATTCT
7796373 TATA
1 TATA
7796377 AATTATTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 12 0.40
30 13 0.43
31 5 0.17
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (31 bp):
TATACATGAACTTTGATTTTGATCCAATTCT
Found at i:7818294 original size:15 final size:15
Alignment explanation
Indices: 7818270--7818307 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
7818260 TATTGTTCTA
7818270 ATTT-TTTTTGGAAC
1 ATTTATTTTTGGAAC
7818284 ATTTATTTTTGGAAC
1 ATTTATTTTTGGAAC
7818299 ATTTATTTT
1 ATTTATTTT
7818308 GGATTACTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.24, C:0.05, G:0.11, T:0.61
Consensus pattern (15 bp):
ATTTATTTTTGGAAC
Found at i:7826697 original size:27 final size:28
Alignment explanation
Indices: 7826661--7826716 Score: 105
Period size: 27 Copynumber: 2.0 Consensus size: 28
7826651 ACTAAAATGT
7826661 TATAACTTTTTTTATTTACCAAAATATA
1 TATAACTTTTTTTATTTACCAAAATATA
7826689 TATAA-TTTTTTTATTTACCAAAATATA
1 TATAACTTTTTTTATTTACCAAAATATA
7826716 T
1 T
7826717 CAAAAAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 23 0.82
28 5 0.18
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (28 bp):
TATAACTTTTTTTATTTACCAAAATATA
Found at i:7826833 original size:27 final size:27
Alignment explanation
Indices: 7826795--7826861 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
7826785 AGAGAAGCAG
7826795 GTTGGCGGCACCAAACAAGGGAACCCT
1 GTTGGCGGCACCAAACAAGGGAACCCT
** *
7826822 GTTGGCGGCACCAAACAAGGGTTCCTT
1 GTTGGCGGCACCAAACAAGGGAACCCT
7826849 GTTGGCGGCACCA
1 GTTGGCGGCACCA
7826862 CCCTTGAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.24, C:0.28, G:0.31, T:0.16
Consensus pattern (27 bp):
GTTGGCGGCACCAAACAAGGGAACCCT
Found at i:7826947 original size:10 final size:10
Alignment explanation
Indices: 7826928--7827058 Score: 54
Period size: 10 Copynumber: 12.6 Consensus size: 10
7826918 GAAAGAAAGG
*
7826928 AAGAAAGAAA
1 AAGAAGGAAA
7826938 AAGAAGGAAA
1 AAGAAGGAAA
*
7826948 AGGAAAGGAGAGGA
1 AAG-AAGGA-A--A
*
7826962 AAGAAAGAAA
1 AAGAAGGAAA
7826972 AAGAAGGAAA
1 AAGAAGGAAA
7826982 GAA-AAGGAAA
1 -AAGAAGGAAA
** *
7826992 GGGGAGG--A
1 AAGAAGGAAA
*
7827000 AAGAAAGAAA
1 AAGAAGGAAA
*
7827010 AATAAGGAAA
1 AAGAAGGAAA
7827020 GAA-AAGGAAA
1 -AAGAAGGAAA
*
7827030 GGAGAAGAGAAA
1 -AAGAAG-GAAA
* *
7827042 AAAAAAGAAA
1 AAGAAGGAAA
7827052 GAAGAAG
1 -AAGAAG
7827059 AGGGAAGAAA
Statistics
Matches: 89, Mismatches: 20, Indels: 23
0.67 0.15 0.17
Matches are distributed among these distances:
8 4 0.04
10 53 0.60
11 19 0.21
12 6 0.07
13 4 0.04
14 3 0.03
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (10 bp):
AAGAAGGAAA
Found at i:7826968 original size:28 final size:28
Alignment explanation
Indices: 7826913--7826992 Score: 85
Period size: 34 Copynumber: 2.8 Consensus size: 28
7826903 AGAGGGGAAT
7826913 AAGAA-GAAAG-AAAGG-AAGAAAGAAA
1 AAGAAGGAAAGAAAAGGAAAGAAAGAAA
7826938 AAGAAGGAAAAGGAAAGGAGAGGAAAGAAAGAAA
1 AAGAAGG-AAA-G-AA--A-AGGAAAGAAAGAAA
7826972 AAGAAGGAAAGAAAAGGAAAG
1 AAGAAGGAAAGAAAAGGAAAG
7826993 GGGAGGAAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
25 5 0.11
26 1 0.02
27 3 0.07
28 8 0.17
29 1 0.02
30 1 0.02
31 2 0.04
32 2 0.04
33 6 0.13
34 17 0.37
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (28 bp):
AAGAAGGAAAGAAAAGGAAAGAAAGAAA
Found at i:7826986 original size:38 final size:38
Alignment explanation
Indices: 7826928--7827050 Score: 168
Period size: 38 Copynumber: 3.4 Consensus size: 38
7826918 GAAAGAAAGG
7826928 AAGAAAGAAAAAGAA-G---GAAAAGGAAAGGAGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
*
7826962 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGGGAGGA
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
*
7827000 AAGAAAGAAAAATAAGGAAAGAAAAGGAAAGGAGA--A
1 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
* *
7827036 GAGAAAAAAAAAGAA
1 AAGAAAGAAAAAGAA
7827051 AGAAGAAGAG
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
34 15 0.19
35 1 0.01
36 13 0.16
38 50 0.63
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (38 bp):
AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAGGA
Found at i:7827059 original size:10 final size:10
Alignment explanation
Indices: 7826913--7827059 Score: 51
Period size: 10 Copynumber: 14.7 Consensus size: 10
7826903 AGAGGGGAAT
7826913 AAGAAGAAAG
1 AAGAAGAAAG
7826923 AAAGGAAGAAAG
1 -AA-GAAGAAAG
* *
7826935 AAAAAGAAGG
1 AAGAAGAAAG
7826945 AA-AAGGAAAG
1 AAGAA-GAAAG
* *
7826955 GAGAGGAAAG
1 AAGAAGAAAG
7826965 -A-AAGAAA-
1 AAGAAGAAAG
7826972 AAGAAGGAAAG
1 AAGAA-GAAAG
7826983 AA-AAGGAAAG
1 AAGAA-GAAAG
** *
7826993 GGGAGGAAAG
1 AAGAAGAAAG
7827003 -A-AAGAAA-
1 AAGAAGAAAG
*
7827010 AATAAGGAAAG
1 AAGAA-GAAAG
7827021 AA-AAGGAAAG
1 AAGAA-GAAAG
* *
7827031 GAGAAGAGAAAA
1 AAG-A-AGAAAG
*
7827043 AAAAAGAAAG
1 AAGAAGAAAG
7827053 AAGAAGA
1 AAGAAGA
7827060 GGGAAGAAAG
Statistics
Matches: 104, Mismatches: 17, Indels: 31
0.68 0.11 0.20
Matches are distributed among these distances:
8 12 0.12
9 7 0.07
10 59 0.57
11 11 0.11
12 14 0.13
13 1 0.01
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (10 bp):
AAGAAGAAAG
Found at i:7827812 original size:19 final size:19
Alignment explanation
Indices: 7827764--7827815 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
7827754 AAAAAATATA
** *
7827764 TAATATTTTGGTATTTTTT
1 TAATATTTTATTATTTTTG
7827783 TAATATTTTATTATTTTTG
1 TAATATTTTATTATTTTTG
*
7827802 TAATCTTTTATTAT
1 TAATATTTTATTAT
7827816 GGGTTTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (19 bp):
TAATATTTTATTATTTTTG
Found at i:7827840 original size:13 final size:13
Alignment explanation
Indices: 7827822--7827847 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7827812 TTATGGGTTT
7827822 TATAAAAAAATAA
1 TATAAAAAAATAA
7827835 TATAAAAAAATAA
1 TATAAAAAAATAA
7827848 AAAATTACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
TATAAAAAAATAA
Found at i:7827901 original size:28 final size:27
Alignment explanation
Indices: 7827852--7827915 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 27
7827842 AAATAAAAAA
* *
7827852 TTACCAAAATATTATAACTTTTTTTTAT
1 TTACCAAAAAATCATAAC-TTTTTTTAT
7827880 TTACCAAAAAATACATAA-TTTTTTTAT
1 TTACCAAAAAAT-CATAACTTTTTTTAT
7827907 TTACCAAAA
1 TTACCAAAA
7827916 TATATAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 18 0.55
28 11 0.33
29 4 0.12
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (27 bp):
TTACCAAAAAATCATAACTTTTTTTAT
Found at i:7829054 original size:15 final size:14
Alignment explanation
Indices: 7829014--7829042 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7829004 TTTTTGTATC
7829014 AATTTAATTATTCT
1 AATTTAATTATTCT
7829028 AATTTAATTATTCT
1 AATTTAATTATTCT
7829042 A
1 A
7829043 GTTTTAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTTAATTATTCT
Found at i:7829279 original size:10 final size:10
Alignment explanation
Indices: 7829250--7829366 Score: 84
Period size: 10 Copynumber: 11.9 Consensus size: 10
7829240 ACACATAAAA
*
7829250 TTTTTTTTCTC
1 TTTTCTTTC-C
7829261 TTCTTCTTTCC
1 TT-TTCTTTCC
7829272 TTTTCTTTCC
1 TTTTCTTTCC
7829282 TTATT-TTT-C
1 TT-TTCTTTCC
7829291 -TTTCTTTCC
1 TTTTCTTTCC
***
7829300 TCCCCTTTCC
1 TTTTCTTTCC
7829310 TTTTCTTTCC
1 TTTTCTTTCC
7829320 TTCTT-TTT-C
1 TT-TTCTTTCC
7829329 -TTTCTTTCC
1 TTTTCTTTCC
* *
7829338 TCTCCTTTCC
1 TTTTCTTTCC
* *
7829348 TTTTCCTTCT
1 TTTTCTTTCC
7829358 TTTTCTTTC
1 TTTTCTTTC
7829367 TTCCTTTCTT
Statistics
Matches: 83, Mismatches: 14, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
7 4 0.05
8 8 0.10
9 4 0.05
10 52 0.63
11 9 0.11
12 6 0.07
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTCTTTCC
Found at i:7829294 original size:18 final size:18
Alignment explanation
Indices: 7829273--7829383 Score: 95
Period size: 18 Copynumber: 6.1 Consensus size: 18
7829263 CTTCTTTCCT
*
7829273 TTTCTTTCCTTATTTTTC
1 TTTCTTTCCTTCTTTTTC
* * *
7829291 TTTCTTTCCTCCCCTTTCC
1 TTTCTTTCCT-TCTTTTTC
7829310 TTTTCTTTCCTTCTTTTTC
1 -TTTCTTTCCTTCTTTTTC
*
7829329 TTTCTTTCC-TCTCCTTTC
1 TTTCTTTCCTTCT-TTTTC
*
7829347 -CT-TTTCCTTCTTTTTC
1 TTTCTTTCCTTCTTTTTC
7829363 TTTC-TTCCTTTCTTTCTTC
1 TTTCTTTCC-TTCTTT-TTC
7829382 TT
1 TT
7829384 CTTCCCCTCT
Statistics
Matches: 74, Mismatches: 11, Indels: 15
0.74 0.11 0.15
Matches are distributed among these distances:
16 9 0.12
17 12 0.16
18 29 0.39
19 14 0.19
20 10 0.14
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTCTTTCCTTCTTTTTC
Found at i:7829309 original size:38 final size:38
Alignment explanation
Indices: 7829266--7829374 Score: 157
Period size: 38 Copynumber: 2.9 Consensus size: 38
7829256 TTCTCTTCTT
7829266 CTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCCC
1 CTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCCC
* *
7829304 CTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTC
1 CTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCCC
* * *
7829342 CTTTCCTTTTCCTT-CTTTTTCTTTCTTCCTTTC
1 CTTTCCTTTTCTTTCCTTATT-TTTCTTTCTTTC
7829375 TTTCTTCTTC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
37 5 0.08
38 60 0.92
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (38 bp):
CTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTCCC
Found at i:7829327 original size:14 final size:14
Alignment explanation
Indices: 7829310--7829383 Score: 55
Period size: 14 Copynumber: 5.1 Consensus size: 14
7829300 TCCCCTTTCC
7829310 TTTTCTTTCCTTCT
1 TTTTCTTTCCTTCT
*
7829324 TTTTCTTTCTTTCCT
1 TTTTCTTTCCTT-CT
7829339 CTCCTTTCCTTTTCCTTCT
1 -T--TTT-C-TTTCCTTCT
7829358 TTTTCTTT-CTTC-
1 TTTTCTTTCCTTCT
*
7829370 CTTTCTTT-CTTCT
1 TTTTCTTTCCTTCT
7829383 T
1 T
7829384 CTTCCCCTCT
Statistics
Matches: 49, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
12 11 0.22
13 4 0.08
14 14 0.29
15 3 0.06
16 4 0.08
18 4 0.08
19 3 0.06
20 6 0.12
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTCTTTCCTTCT
Found at i:7829335 original size:28 final size:28
Alignment explanation
Indices: 7829304--7829383 Score: 85
Period size: 34 Copynumber: 2.8 Consensus size: 28
7829294 CTTTCCTCCC
7829304 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
1 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
7829332 CTTTCCTCTCCTTTCCTTTTCCTTCTTTTTCTTT
1 CTTT-C-CT--TTT-C-TTTCCTTCTTTTTCTTT
7829366 C-TTCC-TTTCTTT-CTTCTT
1 CTTTCCTTTTCTTTCCTTCTT
7829384 CTTCCCCTCT
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
25 6 0.13
26 3 0.07
27 1 0.02
28 7 0.15
29 1 0.02
30 2 0.04
31 1 0.02
32 4 0.09
33 3 0.07
34 18 0.39
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (28 bp):
CTTTCCTTTTCTTTCCTTCTTTTTCTTT
Found at i:7829367 original size:10 final size:10
Alignment explanation
Indices: 7829315--7829386 Score: 54
Period size: 10 Copynumber: 6.6 Consensus size: 10
7829305 TTTCCTTTTC
*
7829315 TTTCCTTCTT
1 TTTCTTTCTT
7829325 TTTCTTTCTT
1 TTTCTTTCTT
*
7829335 TCCTCTCCTTTCCT
1 T--T-T-CTTTCTT
*
7829349 TTTCCTTCTT
1 TTTCTTTCTT
7829359 TTTCTTTCTT
1 TTTCTTTCTT
7829369 CCTTTCTTTCTT
1 --TTTCTTTCTT
*
7829381 CTTCTT
1 TTTCTT
7829387 CCCCTCTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
10 29 0.58
11 1 0.02
12 12 0.24
13 1 0.02
14 7 0.14
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:7829379 original size:22 final size:23
Alignment explanation
Indices: 7829344--7829386 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7829334 TTCCTCTCCT
*
7829344 TTCCTTTTCCTTCTTTTTCTTTC
1 TTCCTTTTCCTTCTTCTTCTTTC
*
7829367 TTCC-TTTCTTTCTTCTTCTT
1 TTCCTTTTCCTTCTTCTTCTT
7829387 CCCCTCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (23 bp):
TTCCTTTTCCTTCTTCTTCTTTC
Found at i:7829384 original size:28 final size:30
Alignment explanation
Indices: 7829306--7829387 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 30
7829296 TTCCTCCCCT
*
7829306 TTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TTCC-TTTCTTT-CTTCTTCTTCTTTCTTTCC
*
7829338 TCTCCTTTCCTTT-TCCTTCTT-TTTCTTT-C
1 T-TCCTTT-CTTTCTTCTTCTTCTTTCTTTCC
7829367 TTCCTTTCTTTCTTCTTCTTC
1 TTCCTTTCTTTCTTCTTCTTC
7829388 CCCTCTCCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
27 4 0.09
28 13 0.30
29 2 0.05
30 7 0.16
31 6 0.14
32 4 0.09
33 7 0.16
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (30 bp):
TTCCTTTCTTTCTTCTTCTTCTTTCTTTCC
Found at i:7829397 original size:42 final size:40
Alignment explanation
Indices: 7829285--7829400 Score: 105
Period size: 42 Copynumber: 2.9 Consensus size: 40
7829275 TCTTTCCTTA
* *
7829285 TTTTTCTTTCTTTCCTCCCCTT-TCCT-T--TTCTTTCCTTC
1 TTTTTCTTTCTTTCCTCTCCTTCCCCTCTCCTTCTTT--TTC
* * *
7829323 TTTTTCTTTCTTTCCTCTCCTTTCCTTTTCCTTCTTTTTC
1 TTTTTCTTTCTTTCCTCTCCTTCCCCTCTCCTTCTTTTTC
* *
7829363 TTTCTTCCTTTCTTTCTTCTTCTTCCCCTCTCCTTCTT
1 TTT-TT-CTTTCTTTCCTCTCCTTCCCCTCTCCTTCTT
7829401 CCCCCCACCA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
38 21 0.33
39 2 0.03
40 7 0.11
41 2 0.03
42 32 0.50
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (40 bp):
TTTTTCTTTCTTTCCTCTCCTTCCCCTCTCCTTCTTTTTC
Done.