Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 28 of 214
Found at i:7829473 original size:27 final size:27
Alignment explanation
Indices: 7829435--7829501 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
7829425 AATTCAAGGG
7829435 TGGTGCCGCCAACAAGGAACCCTTGTT
1 TGGTGCCGCCAACAAGGAACCCTTGTT
* **
7829462 TGGTGCCGCCAACAGGGTTCCCTTGTT
1 TGGTGCCGCCAACAAGGAACCCTTGTT
*
7829489 TGGTGCCGTCAAC
1 TGGTGCCGCCAAC
7829502 CTGCTTCCCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.16, C:0.30, G:0.28, T:0.25
Consensus pattern (27 bp):
TGGTGCCGCCAACAAGGAACCCTTGTT
Found at i:7829509 original size:27 final size:27
Alignment explanation
Indices: 7829435--7829511 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
7829425 AATTCAAGGG
**
7829435 TGGTGCCGCCAACAAGG-AACCCTTGTT
1 TGGTGCCGCCAAC-AGGCTTCCCTTGTT
*
7829462 TGGTGCCGCCAACAGGGTTCCCTTGTT
1 TGGTGCCGCCAACAGGCTTCCCTTGTT
* **
7829489 TGGTGCCGTCAACCTGCTTCCCT
1 TGGTGCCGCCAACAGGCTTCCCT
7829512 CCACCCAAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.14, C:0.32, G:0.26, T:0.27
Consensus pattern (27 bp):
TGGTGCCGCCAACAGGCTTCCCTTGTT
Found at i:7829610 original size:28 final size:28
Alignment explanation
Indices: 7829572--7829636 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
7829562 GTTTTTTTTG
7829572 ATATATTTTGGTAAATAAAAAAAATTAT
1 ATATATTTTGGTAAATAAAAAAAATTAT
*
7829600 ATATATTTTGGTAAATAAAAAAAGTTAT
1 ATATATTTTGGTAAATAAAAAAAATTAT
*
7829628 A-ACATTTTG
1 ATATATTTTG
7829637 ATAATTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 7 0.20
28 28 0.80
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (28 bp):
ATATATTTTGGTAAATAAAAAAAATTAT
Found at i:7829760 original size:28 final size:28
Alignment explanation
Indices: 7829723--7829808 Score: 147
Period size: 28 Copynumber: 3.1 Consensus size: 28
7829713 ATGAAAATGT
7829723 TATAACTTTTTTTTATTTACCAAAATATA
1 TATAA-TTTTTTTTATTTACCAAAATATA
*
7829752 TATAATTTTTTTTATTTACCAAAAAATA
1 TATAATTTTTTTTATTTACCAAAATATA
7829780 TATAA-TTTTTTTATTTACCAAAATATA
1 TATAATTTTTTTTATTTACCAAAATATA
7829807 TA
1 TA
7829809 AAAAAAACCA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
27 23 0.42
28 27 0.49
29 5 0.09
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (28 bp):
TATAATTTTTTTTATTTACCAAAATATA
Found at i:7829820 original size:19 final size:19
Alignment explanation
Indices: 7829796--7829836 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
7829786 TTTTTTATTT
* *
7829796 ACCAAAATATATAAAAAAA
1 ACCAAAAAAAATAAAAAAA
7829815 ACCAAAAAAAATAAAAAAA
1 ACCAAAAAAAATAAAAAAA
7829834 ACC
1 ACC
7829837 TGGACCGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.10
Consensus pattern (19 bp):
ACCAAAAAAAATAAAAAAA
Found at i:7829904 original size:27 final size:27
Alignment explanation
Indices: 7829873--7829941 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
7829863 CAAGGGAACA
7829873 CTGTTGGCGGCACCAAACAAGGATTCC
1 CTGTTGGCGGCACCAAACAAGGATTCC
* *
7829900 TTGTTGGCGGCACCAAACAAGGGTTCC
1 CTGTTGGCGGCACCAAACAAGGATTCC
* *
7829927 CTATTGGCAGCACCA
1 CTGTTGGCGGCACCA
7829942 CTCGTGTTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (27 bp):
CTGTTGGCGGCACCAAACAAGGATTCC
Found at i:7830235 original size:3 final size:3
Alignment explanation
Indices: 7830227--7830252 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7830217 AATTTTATAG
7830227 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
7830253 AGATGTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7830346 original size:61 final size:62
Alignment explanation
Indices: 7830258--7830375 Score: 154
Period size: 61 Copynumber: 1.9 Consensus size: 62
7830248 TATTAAGATG
* *
7830258 TTAGTTAGTATTATTGTTAGT-AAAAA-ATTAGTATTATTTTTGTAGTTAGTTATTAATAATT
1 TTAGTTAGTATTATTGTTAGTAAAAAATATTAATATTATTATTGT-GTTAGTTATTAATAATT
7830319 TTAGTTAGTATTATT-TT-GTATATAAAATTATTAATATTATTATTGTGTTAGTTATTA
1 TTAGTTAGTATTATTGTTAGTA-A-AAAA-TATTAATATTATTATTGTGTTAGTTATTA
7830376 GGATTAGTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
59 2 0.04
60 2 0.04
61 16 0.32
62 4 0.08
63 11 0.22
64 15 0.30
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (62 bp):
TTAGTTAGTATTATTGTTAGTAAAAAATATTAATATTATTATTGTGTTAGTTATTAATAATT
Found at i:7831013 original size:18 final size:18
Alignment explanation
Indices: 7830982--7831027 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
7830972 TTGATATGGT
* *
7830982 TGGTGGTGAAGAAGAAGG
1 TGGTGGCGATGAAGAAGG
*
7831000 TGGTTGCGATGAAGAAGG
1 TGGTGGCGATGAAGAAGG
7831018 TGGTGGCGAT
1 TGGTGGCGAT
7831028 CATTGGGATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.48, T:0.22
Consensus pattern (18 bp):
TGGTGGCGATGAAGAAGG
Found at i:7833425 original size:14 final size:14
Alignment explanation
Indices: 7833406--7833434 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7833396 TAACTGAAAG
7833406 TAGAATAATTAAAT
1 TAGAATAATTAAAT
7833420 TAGAATAATTAAAT
1 TAGAATAATTAAAT
7833434 T
1 T
7833435 GATACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (14 bp):
TAGAATAATTAAAT
Found at i:7835739 original size:17 final size:16
Alignment explanation
Indices: 7835699--7835741 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
7835689 TTTAGTGTGT
*
7835699 TTTTTTTTCCTTTTTTA
1 TTTTTTTT-GTTTTTTA
*
7835716 TTCTTTTTGTTTTTTA
1 TTTTTTTTGTTTTTTA
7835732 CTTTTTTTTG
1 -TTTTTTTTG
7835742 ATATATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.05, C:0.09, G:0.05, T:0.81
Consensus pattern (16 bp):
TTTTTTTTGTTTTTTA
Found at i:7835772 original size:26 final size:27
Alignment explanation
Indices: 7835742--7835810 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
7835732 CTTTTTTTTG
*
7835742 ATATATTTTGGTAAATAATAAAAATTAT
1 ATATATTTTGGTAAATAA-AAAAAGTAT
*
7835770 ATATATTTTGGTCAATAAAAAAAGT-T
1 ATATATTTTGGTAAATAAAAAAAGTAT
7835796 ATAATATTTTGGTAA
1 AT-ATATTTTGGTAA
7835811 TTTTTTATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.08
27 17 0.46
28 17 0.46
ACGTcount: A:0.46, C:0.01, G:0.10, T:0.42
Consensus pattern (27 bp):
ATATATTTTGGTAAATAAAAAAAGTAT
Found at i:7835802 original size:27 final size:28
Alignment explanation
Indices: 7835742--7835810 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
7835732 CTTTTTTTTG
7835742 ATATATTTTGGTAAATAATAAAAATTAT
1 ATATATTTTGGTAAATAATAAAAATTAT
*
7835770 ATATATTTTGGTCAATAA-AAAAAGTTAT
1 ATATATTTTGGTAAATAATAAAAA-TTAT
7835798 A-ATATTTTGGTAA
1 ATATATTTTGGTAA
7835811 TTTTTTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 16 0.42
28 22 0.58
ACGTcount: A:0.46, C:0.01, G:0.10, T:0.42
Consensus pattern (28 bp):
ATATATTTTGGTAAATAATAAAAATTAT
Found at i:7835869 original size:19 final size:19
Alignment explanation
Indices: 7835845--7835885 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7835835 TATAAAACCC
7835845 ATAATAAAACA-TTACAAAA
1 ATAATAAAACATTTA-AAAA
*
7835864 ATAATAAAATATTTAAAAA
1 ATAATAAAACATTTAAAAA
7835883 ATA
1 ATA
7835886 CCAAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (19 bp):
ATAATAAAACATTTAAAAA
Found at i:7836616 original size:4 final size:4
Alignment explanation
Indices: 7836609--7836750 Score: 59
Period size: 4 Copynumber: 35.2 Consensus size: 4
7836599 TTCCCTCTTC
* *
7836609 TTCT TTCT TT-T TTTT TTCT CTTCT CTTC- TCCT TTCCTT TTCT TTCCT
1 TTCT TTCT TTCT TTCT TTCT -TTCT -TTCT TTCT TT-C-T TTCT TT-CT
* * *
7836656 TATTT TTCT TTCT TTCC TTC- TT-T TTCT TTCT TTCCT CTCCT TTCCTT
1 T-TCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT-CT -TTCT TT-C-T
* * *
7836703 TTCC TTC- TT-T TTCT TT-T TTCC TTC- TT-T TTCT TTCT TCCT TTCT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT
7836746 TTCT T
1 TTCT T
7836751 CTTCTTCCCC
Statistics
Matches: 108, Mismatches: 12, Indels: 36
0.69 0.08 0.23
Matches are distributed among these distances:
3 20 0.19
4 59 0.55
5 21 0.19
6 8 0.07
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (4 bp):
TTCT
Found at i:7836617 original size:10 final size:10
Alignment explanation
Indices: 7836604--7836756 Score: 64
Period size: 10 Copynumber: 16.0 Consensus size: 10
7836594 CTTCCTTCCC
7836604 TCTTCTTCTT
1 TCTTCTTCTT
7836614 TCTT-TT-TT
1 TCTTCTTCTT
*
7836622 TTTTC-TCTT
1 TCTTCTTCTT
*
7836631 CTCTTCTCCTT
1 -TCTTCTTCTT
7836642 TCCTT-TTCTT
1 T-CTTCTTCTT
*
7836652 TC--CTTATT
1 TCTTCTTCTT
7836660 T-TTCTTTCTT
1 TCTTC-TTCTT
7836670 TC--CTTCTT
1 TCTTCTTCTT
7836678 T-TTCTTTCTT
1 TCTTC-TTCTT
* *
7836688 TCCTCTCCTT
1 TCTTCTTCTT
7836698 TC--CTT-TT
1 TCTTCTTCTT
*
7836705 CCTTCTT-TT
1 TCTTCTTCTT
* *
7836714 TCTTTTTTCCT
1 TC-TTCTTCTT
*
7836725 TCTTTTTCTT
1 TCTTCTTCTT
7836735 TCTTCCTTTCTT
1 TCTT-C-TTCTT
7836747 TCTTCTTCTT
1 TCTTCTTCTT
7836757 CCCCTCTCCT
Statistics
Matches: 108, Mismatches: 15, Indels: 40
0.66 0.09 0.25
Matches are distributed among these distances:
7 3 0.03
8 19 0.18
9 14 0.13
10 51 0.47
11 12 0.11
12 9 0.08
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (10 bp):
TCTTCTTCTT
Found at i:7836667 original size:18 final size:18
Alignment explanation
Indices: 7836646--7836753 Score: 127
Period size: 18 Copynumber: 6.1 Consensus size: 18
7836636 CTCCTTTCCT
*
7836646 TTTCTTTCCTTATTTTTC
1 TTTCTTTCCTTCTTTTTC
7836664 TTTCTTTCCTTCTTTTTC
1 TTTCTTTCCTTCTTTTTC
*
7836682 TTTCTTTCC-TCTCCTTTC
1 TTTCTTTCCTTCT-TTTTC
*
7836700 -CT-TTTCCTTCTTTTTC
1 TTTCTTTCCTTCTTTTTC
7836716 TTT-TTTCCTTCTTTTTC
1 TTTCTTTCCTTCTTTTTC
7836733 TTTC-TTCCTTTCTTTCTTC
1 TTTCTTTCC-TTCTTT-TTC
7836752 TT
1 TT
7836754 CTTCCCCTCT
Statistics
Matches: 79, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
16 9 0.11
17 29 0.37
18 36 0.46
19 5 0.06
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTCTTTCCTTCTTTTTC
Found at i:7836670 original size:56 final size:53
Alignment explanation
Indices: 7836604--7836738 Score: 145
Period size: 56 Copynumber: 2.5 Consensus size: 53
7836594 CTTCCTTCCC
*
7836604 TCTTC-TTCTTTCTTTTTTT-TTTCTCTTCTCTTCTCCTTTCCTTTTCTTTCCTTATT
1 TCTTCTTTCTTTCTTTTTTTCTTTCT-TTC-C-TCTCCTTTCCTTTTCCTT-CTT-TT
7836660 T-TTCTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCCTTTTCCTTCTTTT
1 TCTTCTTTCTTT-CTT-TTTTTCTTTCTTTCCTCTCCTTTCCTTTTCCTTCTTTT
* *
7836714 TCTTTTTTCCTTC--TTTTTCTTTCTT
1 TCTTCTTTCTTTCTTTTTTTCTTTCTT
7836739 CCTTTCTTTC
Statistics
Matches: 71, Mismatches: 3, Indels: 15
0.80 0.03 0.17
Matches are distributed among these distances:
51 12 0.17
54 4 0.06
55 14 0.20
56 24 0.34
57 4 0.06
58 8 0.11
59 5 0.07
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (53 bp):
TCTTCTTTCTTTCTTTTTTTCTTTCTTTCCTCTCCTTTCCTTTTCCTTCTTTT
Found at i:7836710 original size:28 final size:27
Alignment explanation
Indices: 7836635--7836714 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 27
7836625 TCTCTTCTCT
*
7836635 TCTCCTTTCCTTTTCTTTCCTTATTTTTC
1 TCTCCTTTCCTTTTCTTT-CTT-TTTTCC
*
7836664 T-TTCTTTCCTTCTT-TTTCTTTCTTTCC
1 TCTCCTTTCCTT-TTCTTTCTTT-TTTCC
*
7836691 TCTCCTTTCCTTTTCCTTCTTTTT
1 TCTCCTTTCCTTTTCTTTCTTTTT
7836715 CTTTTTTCCT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
26 1 0.02
27 12 0.28
28 27 0.63
29 3 0.07
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (27 bp):
TCTCCTTTCCTTTTCTTTCTTTTTTCC
Found at i:7836711 original size:34 final size:34
Alignment explanation
Indices: 7836668--7836767 Score: 107
Period size: 34 Copynumber: 2.9 Consensus size: 34
7836658 TTTTTCTTTC
7836668 TTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCCT
1 TTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCCT
* *
7836702 TTTCCTTCTTTTTCTTT-TTTCCT-TCTTTTTCTT
1 TTTCCTTCTTTTTCTTTCTTTCCTCTC-CTTTCCT
*
7836735 TCTTCCTTTCTTTCTTC-TTCTTCCCCTCTCCTT
1 T-TTCC-TTCTTT-TTCTTTCTT-TCCTCTCCTT
7836768 CTTCCCCCCA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
32 2 0.04
33 12 0.22
34 21 0.38
35 8 0.15
36 5 0.09
37 5 0.09
38 2 0.04
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (34 bp):
TTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCCT
Found at i:7836727 original size:51 final size:52
Alignment explanation
Indices: 7836576--7836739 Score: 171
Period size: 52 Copynumber: 3.2 Consensus size: 52
7836566 AATTACCTTA
* * * * * *
7836576 TTTTCTTTTTTTTCCT-TCC-TTCC-TTCCCTCTTCTTCTTTCTTT--TTTT
1 TTTTCTTTCTTCTCCTCTCCTTTCCTTTCCTTATTTTTCTTTCTTTCCTTCT
* *
7836623 TTTCTCTTCTCTTCTCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCCTTCT
1 TTT-TCTT-TCTTCTCCTCTCCTTTCCTTTCCTTATTTTTCTTTCTTTCCTTCT
*
7836677 TTTTCTTTCTT-TCCTCTCCTTTCCTTTTCCTTCTTTTTCTTT-TTTCCTTCT
1 TTTTCTTTCTTCTCCTCTCCTTTCC-TTTCCTTATTTTTCTTTCTTTCCTTCT
7836728 TTTTCTTTCTTC
1 TTTTCTTTCTTC
7836740 CTTTCTTTCT
Statistics
Matches: 98, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
47 3 0.03
48 4 0.04
49 7 0.07
50 3 0.03
51 34 0.35
52 37 0.38
53 4 0.04
54 6 0.06
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (52 bp):
TTTTCTTTCTTCTCCTCTCCTTTCCTTTCCTTATTTTTCTTTCTTTCCTTCT
Found at i:7836767 original size:59 final size:58
Alignment explanation
Indices: 7836658--7836770 Score: 138
Period size: 59 Copynumber: 1.9 Consensus size: 58
7836648 TCTTTCCTTA
* * * *
7836658 TTTTTCTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCCTTTCCTTTTCCTTCTTTTTCT
1 TTTTTCCTTCTTT-CTTCTTTTTCTTTCTTTCCTCTCCTTCCCCTCTCCTTCTTTTTCT
* *
7836717 TTTTTCCTTCTTT-TTCTTTCTTCCTTTCTTTCTTCTTCTTCCCCTCTCCTTCTT
1 TTTTTCCTTCTTTCTTCTTT-TT-CTTTCTTTCCTCTCCTTCCCCTCTCCTTCTT
7836771 CCCCCCATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
57 6 0.13
58 2 0.04
59 38 0.83
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (58 bp):
TTTTTCCTTCTTTCTTCTTTTTCTTTCTTTCCTCTCCTTCCCCTCTCCTTCTTTTTCT
Found at i:7836845 original size:27 final size:27
Alignment explanation
Indices: 7836805--7836872 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
7836795 ATATTTAAGG
* *
7836805 TGGTGCCGCCAACAAGGAATCCTTGTT
1 TGGTGCCGCCAACAAGGAACCCTTATT
* **
7836832 TGGTGCCGCAAACAAGGTCCCCTTATT
1 TGGTGCCGCCAACAAGGAACCCTTATT
7836859 TGGTGCCGCCAACA
1 TGGTGCCGCCAACA
7836873 GTGTTCCCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (27 bp):
TGGTGCCGCCAACAAGGAACCCTTATT
Found at i:7836968 original size:23 final size:23
Alignment explanation
Indices: 7836939--7836984 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
7836929 AGTTTTTTTG
*
7836939 ATATATTTTGGTAAATAAAAAAA
1 ATATATTTTAGTAAATAAAAAAA
7836962 ATATATTTTAGTAAATAAAAAAA
1 ATATATTTTAGTAAATAAAAAAA
7836985 TGTATAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.35
Consensus pattern (23 bp):
ATATATTTTAGTAAATAAAAAAA
Found at i:7838509 original size:34 final size:34
Alignment explanation
Indices: 7838471--7838537 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
7838461 ACATTTATCA
*
7838471 CAAATTTTAGACAAAAT-AAAATTAATTTCTAATT
1 CAAATTTTACA-AAAATGAAAATTAATTTCTAATT
* *
7838505 CAAATTTTACAAAAATGAAAATTTATTTTTAAT
1 CAAATTTTACAAAAATGAAAATTAATTTCTAAT
7838538 ATAAACAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 24 0.83
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.40
Consensus pattern (34 bp):
CAAATTTTACAAAAATGAAAATTAATTTCTAATT
Found at i:7839550 original size:16 final size:16
Alignment explanation
Indices: 7839531--7839563 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7839521 GAAAACAAAA
*
7839531 AACATGTTGAAAATTT
1 AACATGTCGAAAATTT
7839547 AACATGTCGAAAATTT
1 AACATGTCGAAAATTT
7839563 A
1 A
7839564 CCCATCTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.33
Consensus pattern (16 bp):
AACATGTCGAAAATTT
Found at i:7843967 original size:13 final size:13
Alignment explanation
Indices: 7843949--7843974 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7843939 GTTATATTTT
7843949 CGTTTAGTTCTCA
1 CGTTTAGTTCTCA
7843962 CGTTTAGTTCTCA
1 CGTTTAGTTCTCA
7843975 TATTCGTCGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
CGTTTAGTTCTCA
Found at i:7845566 original size:24 final size:26
Alignment explanation
Indices: 7845520--7845584 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 26
7845510 ATTAAAGCCA
* *
7845520 TAATTGGGAAGCTCAAGCGAGCCAA-
1 TAATCGGGAAGCTCAAGAGAGCCAAT
* *
7845545 T-ATCGGGAAGCTCCAGATAGCCAAT
1 TAATCGGGAAGCTCAAGAGAGCCAAT
*
7845570 TAATCGAGAAGCTCA
1 TAATCGGGAAGCTCA
7845585 TGAAAAAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 19 0.59
25 2 0.06
26 11 0.34
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (26 bp):
TAATCGGGAAGCTCAAGAGAGCCAAT
Found at i:7854146 original size:2 final size:2
Alignment explanation
Indices: 7854141--7854165 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7854131 TATATATATA
7854141 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
7854166 AAACTAGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:7855044 original size:17 final size:18
Alignment explanation
Indices: 7855008--7855044 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
7854998 CTCCCTTACA
7855008 AGTATCGATACCATGTTCT
1 AGTATCGATACCA-GTTCT
7855027 AGTATCGATACC-GTTCT
1 AGTATCGATACCAGTTCT
7855044 A
1 A
7855045 CGATTTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (18 bp):
AGTATCGATACCAGTTCT
Found at i:7860341 original size:15 final size:16
Alignment explanation
Indices: 7860321--7860361 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
7860311 AACATGCAAG
7860321 AAAAT-AAATATAAAT-
1 AAAATAAAATA-AAATA
7860336 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
7860352 AAAATAAAAT
1 AAAATAAAAT
7860362 TGGGTTGTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.38
16 15 0.62
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:7860342 original size:5 final size:5
Alignment explanation
Indices: 7860321--7860361 Score: 57
Period size: 5 Copynumber: 8.0 Consensus size: 5
7860311 AACATGCAAG
7860321 AAAAT -AAAT ATAAAT AAAAT AAAAT AAAAT AAAAAT AAAAT
1 AAAAT AAAAT A-AAAT AAAAT AAAAT AAAAT -AAAAT AAAAT
7860362 TGGGTTGTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.12
5 19 0.58
6 10 0.30
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AAAAT
Found at i:7880356 original size:36 final size:35
Alignment explanation
Indices: 7880265--7880356 Score: 123
Period size: 34 Copynumber: 2.6 Consensus size: 35
7880255 ACTATTTGTT
7880265 TTGGTGTGTTTCAGATGGA-TAGCTCTTATGAGCA
1 TTGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
* *
7880299 TTGGTGTGTTTTAGATAGATTAGCTCTTATGAGCA
1 TTGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
* * *
7880334 TCTGGTATGTTTCGGTTGGATTA
1 T-TGGTGTGTTTCAGATGGATTA
7880357 TCGATGTACT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
34 17 0.35
35 16 0.33
36 16 0.33
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
Found at i:7881825 original size:12 final size:12
Alignment explanation
Indices: 7881808--7881835 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7881798 ATAATATATA
7881808 TTTTTTAAATTT
1 TTTTTTAAATTT
7881820 TTTTTTAAATTT
1 TTTTTTAAATTT
7881832 TTTT
1 TTTT
7881836 AAACACATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTAAATTT
Found at i:7898078 original size:28 final size:28
Alignment explanation
Indices: 7898040--7898112 Score: 101
Period size: 30 Copynumber: 2.5 Consensus size: 28
7898030 CGAATATAAT
* *
7898040 AAATATTTTTTTATTTTTTTTATTTTTA
1 AAATATTTTTTAAATTTTTTTATTTTTA
7898068 AAATACTTTTTTAAAATTTTTTTATTTTTA
1 AAATA-TTTTTT-AAATTTTTTTATTTTTA
*
7898098 AAATATTTTTAAAAT
1 AAATATTTTTTAAAT
7898113 ACTTTTTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
28 9 0.22
29 11 0.28
30 20 0.50
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (28 bp):
AAATATTTTTTAAATTTTTTTATTTTTA
Found at i:7898088 original size:30 final size:31
Alignment explanation
Indices: 7898054--7898122 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 31
7898044 ATTTTTTTAT
*
7898054 TTTTTTTATTTTTAAAATACTTTTTTAAA-A-
1 TTTTTTTATTTTTAAAATA-TTTTTAAAATAC
7898084 TTTTTTTATTTTTAAAATATTTTTAAAATAC
1 TTTTTTTATTTTTAAAATATTTTTAAAATAC
7898115 TTTTTTTA
1 TTTTTTTA
7898123 AAAATTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 8 0.22
30 20 0.56
31 8 0.22
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (31 bp):
TTTTTTTATTTTTAAAATATTTTTAAAATAC
Found at i:7898105 original size:41 final size:40
Alignment explanation
Indices: 7898039--7898132 Score: 127
Period size: 42 Copynumber: 2.3 Consensus size: 40
7898029 CCGAATATAA
**
7898039 TAAATATTTTTTTATTTTTTTTATTTTTAAAATAC-TTTTT
1 TAAA-ATTTTTTTATTTTTAATATTTTTAAAATACTTTTTT
7898079 TAAAATTTTTTTATTTTTAAAATATTTTTAAAATACTTTTTT
1 TAAAATTTTTTTATTTTT--AATATTTTTAAAATACTTTTTT
*
7898121 TAAAAATTTTTT
1 TAAAATTTTTTT
7898133 GGTGTTTATT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
39 14 0.29
40 4 0.08
41 14 0.29
42 16 0.33
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (40 bp):
TAAAATTTTTTTATTTTTAATATTTTTAAAATACTTTTTT
Found at i:7898132 original size:13 final size:14
Alignment explanation
Indices: 7898062--7898125 Score: 55
Period size: 11 Copynumber: 4.6 Consensus size: 14
7898052 ATTTTTTTTA
7898062 TTTTTAAAATAC-T
1 TTTTTAAAATACTT
**
7898075 TTTTTAAAATTTTTTT
1 TTTTTAAAA--TACTT
7898091 ATTTTTAAAATA---
1 -TTTTTAAAATACTT
7898103 TTTTTAAAATACTT
1 TTTTTAAAATACTT
7898117 TTTTTAAAA
1 TTTTTAAAA
7898126 ATTTTTTGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
11 11 0.27
13 9 0.22
14 9 0.22
15 2 0.05
16 1 0.02
17 9 0.22
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTTAAAATACTT
Found at i:7899305 original size:19 final size:19
Alignment explanation
Indices: 7899249--7899305 Score: 96
Period size: 19 Copynumber: 3.0 Consensus size: 19
7899239 CCACTGTCAC
* *
7899249 CCACTGTAATCAAATTTGC
1 CCACCGTAATCAAATTTGT
7899268 CCACCGTAATCAAATTTGT
1 CCACCGTAATCAAATTTGT
7899287 CCACCGTAATCAAATTTGT
1 CCACCGTAATCAAATTTGT
7899306 TATTAACTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (19 bp):
CCACCGTAATCAAATTTGT
Found at i:7899658 original size:36 final size:36
Alignment explanation
Indices: 7899584--7899658 Score: 82
Period size: 36 Copynumber: 2.1 Consensus size: 36
7899574 ATGATTAAAC
* *
7899584 AATTCAATAATATAAATATTAGAAAATGTGAAATTT
1 AATTCAATAATATAAATATTAGAAAATATGAAAATT
* *
7899620 AATTTAATTATATAAATATTAGATATAA-AT-AAAATT
1 AATTCAATAATATAAATATTAGA-A-AATATGAAAATT
7899656 AAT
1 AAT
7899659 ACTATTTAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
36 29 0.88
37 2 0.06
38 2 0.06
ACGTcount: A:0.55, C:0.01, G:0.05, T:0.39
Consensus pattern (36 bp):
AATTCAATAATATAAATATTAGAAAATATGAAAATT
Found at i:7900755 original size:21 final size:21
Alignment explanation
Indices: 7900707--7900748 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7900697 TTCTACTTAA
7900707 GCCCAAAAATACAATTTTTTT
1 GCCCAAAAATACAATTTTTTT
7900728 GCCCAAAAATACAATTTTTTT
1 GCCCAAAAATACAATTTTTTT
7900749 CTTCAAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (21 bp):
GCCCAAAAATACAATTTTTTT
Found at i:7903989 original size:22 final size:21
Alignment explanation
Indices: 7903936--7903990 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 21
7903926 TTTATTGTTG
* *
7903936 TTTGTTGTTGTTTGCTGCCAT
1 TTTGTTGTTATTTGCTACCAT
* * *
7903957 TTTGCTATTATATTGCTACTAT
1 TTTGTTGTTAT-TTGCTACCAT
7903979 TTTGTTGTTATT
1 TTTGTTGTTATT
7903991 GTTTGGATAT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.13, C:0.11, G:0.16, T:0.60
Consensus pattern (21 bp):
TTTGTTGTTATTTGCTACCAT
Found at i:7904596 original size:17 final size:17
Alignment explanation
Indices: 7904574--7904608 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7904564 TAAATTTTGA
7904574 AATTTTTAATAATTATT
1 AATTTTTAATAATTATT
* *
7904591 AATTTTTTATATTTATT
1 AATTTTTAATAATTATT
7904608 A
1 A
7904609 TAATATATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
AATTTTTAATAATTATT
Found at i:7909108 original size:75 final size:75
Alignment explanation
Indices: 7909029--7909180 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
7909019 TTTTTTAAAA
7909029 CTTATTGGAATGGGCTGATTTTGATAAAACAATTCTAGCTAAATACATTTTCAGGAAAATTTCAG
1 CTTATTGGAATGGGCTGATTTTGATAAAACAATTCTAGCTAAATACATTTTCAGGAAAATTTCAG
7909094 AAAAACGCTT
66 AAAAACGCTT
7909104 CTTATTGGAATGGGCTGATTTTGATAAAACAATTCTAGCTAAATACATTTTCAGGAAAATTTCAG
1 CTTATTGGAATGGGCTGATTTTGATAAAACAATTCTAGCTAAATACATTTTCAGGAAAATTTCAG
7909169 AAAAACGCTT
66 AAAAACGCTT
7909179 CT
1 CT
7909181 AGCTAGAAGC
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (75 bp):
CTTATTGGAATGGGCTGATTTTGATAAAACAATTCTAGCTAAATACATTTTCAGGAAAATTTCAG
AAAAACGCTT
Found at i:7909410 original size:41 final size:41
Alignment explanation
Indices: 7909349--7909540 Score: 271
Period size: 41 Copynumber: 4.7 Consensus size: 41
7909339 CCTTTCGGGG
* *
7909349 CTTTAGCGAC-TTTTTAAAAAAGCACCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCAGAT
*
7909389 CTTTAGCGGCGTTTTTGAAAAAG-AGCCGCTAGTGCTCAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCA-CCGCTAATGCTCAGAT
* *
7909430 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCAGAT
* * *
7909471 CTTTAGCGGCGCTTTTGAAAAAGCACCTCTAATTCTCAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCAGAT
* *
7909512 CTTTAGCAGCGTTTTTGAAAAAGCGCCGC
1 CTTTAGCGGCGTTTTTGAAAAAGCACCGC
7909541 AAAAACATTT
Statistics
Matches: 134, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
40 10 0.07
41 124 0.93
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCAGAT
Found at i:7909685 original size:26 final size:26
Alignment explanation
Indices: 7909637--7909687 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
7909627 AAAATGGATA
** * *
7909637 AATTTGAAATAATGACACGTAGAAAT
1 AATTTGAAATAAAAAAACATAGAAAT
7909663 AATTTGAAATAAAAAAACATAGAAA
1 AATTTGAAATAAAAAAACATAGAAA
7909688 AATATTTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.24
Consensus pattern (26 bp):
AATTTGAAATAAAAAAACATAGAAAT
Found at i:7909980 original size:14 final size:15
Alignment explanation
Indices: 7909947--7909980 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
7909937 TAAGGTTTAT
7909947 AGATTATGGAATTAG
1 AGATTATGGAATTAG
7909962 AGATTATGG-ATTAG
1 AGATTATGGAATTAG
*
7909976 GGATT
1 AGATT
7909981 CTGATTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (15 bp):
AGATTATGGAATTAG
Found at i:7910057 original size:21 final size:20
Alignment explanation
Indices: 7910004--7910057 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
7909994 TGTGGTTTAA
* *
7910004 GGTTTATGGGTTAGGGGTTAG
1 GGTTTA-GGGTTAAGAGTTAG
*
7910025 GGGTTAGAGGTTAAGAGTTAG
1 GGTTTAG-GGTTAAGAGTTAG
7910046 GGATTTAGGGTT
1 GG-TTTAGGGTT
7910058 TATGGATTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 1 0.04
21 22 0.81
22 4 0.15
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.35
Consensus pattern (20 bp):
GGTTTAGGGTTAAGAGTTAG
Found at i:7910154 original size:89 final size:89
Alignment explanation
Indices: 7910050--7910240 Score: 258
Period size: 89 Copynumber: 2.1 Consensus size: 89
7910040 AGTTAGGGAT
* * * * *
7910050 TTAGGGTTTATGGATTCAGTGT-GAGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTATTTTAAT
1 TTAGGGGTTAGGGATTCAGGGTCG-GGTTAGGGTTTAGGATTTAGATTAATCAGTGTATTTTAAT
*
7910114 TTATATAATAAATAATGTTTAGGGG
65 TTATATAATAAATAAGGTTTAGGGG
* * *
7910139 TTAGGGGTTAGGGATTCGGGGTCGGGTTAGGGTTTATGATTTAGATTAATCAGTGTTTTTTAATT
1 TTAGGGGTTAGGGATTCAGGGTCGGGTTAGGGTTTAGGATTTAGATTAATCAGTGTATTTTAATT
* *
7910204 TATTTATTAAATAAGGTTTAGGGG
66 TATATAATAAATAAGGTTTAGGGG
*
7910228 TTAGTGGTTAGGG
1 TTAGGGGTTAGGG
7910241 GTTTGGGGTT
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 88 0.99
90 1 0.01
ACGTcount: A:0.25, C:0.02, G:0.30, T:0.43
Consensus pattern (89 bp):
TTAGGGGTTAGGGATTCAGGGTCGGGTTAGGGTTTAGGATTTAGATTAATCAGTGTATTTTAATT
TATATAATAAATAAGGTTTAGGGG
Found at i:7910249 original size:89 final size:89
Alignment explanation
Indices: 7910074--7910249 Score: 262
Period size: 89 Copynumber: 2.0 Consensus size: 89
7910064 TTCAGTGTGA
* * *
7910074 GGTTAGGGTTTAGGGTTTAGATTAATTAGTGTATTTTAATTTATATAATAAATAATGTTTAGGGG
1 GGTTAGGGTTTAGGATTTAGATTAATCAGTGTATTTTAATTTATATAATAAATAAGGTTTAGGGG
7910139 TTAGGGGTTAGGGATTCGGGGTCG
66 TTAGGGGTTAGGGATTCGGGGTCG
* * * *
7910163 GGTTAGGGTTTATGATTTAGATTAATCAGTGTTTTTTAATTTATTTATTAAATAAGGTTTAGGGG
1 GGTTAGGGTTTAGGATTTAGATTAATCAGTGTATTTTAATTTATATAATAAATAAGGTTTAGGGG
* * *
7910228 TTAGTGGTTAGGGGTTTGGGGT
66 TTAGGGGTTAGGGATTCGGGGT
7910250 TAAGATTAGT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 77 1.00
ACGTcount: A:0.24, C:0.02, G:0.31, T:0.43
Consensus pattern (89 bp):
GGTTAGGGTTTAGGATTTAGATTAATCAGTGTATTTTAATTTATATAATAAATAAGGTTTAGGGG
TTAGGGGTTAGGGATTCGGGGTCG
Found at i:7910672 original size:17 final size:16
Alignment explanation
Indices: 7910639--7910672 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7910629 ATATTAGATT
*
7910639 TAAAAAAATTAATAAA
1 TAAAAAAATTAACAAA
7910655 TAAAAAAATGTAACAAA
1 TAAAAAAAT-TAACAAA
7910672 T
1 T
7910673 TGATACGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAAAATTAACAAA
Found at i:7912219 original size:19 final size:19
Alignment explanation
Indices: 7912194--7912304 Score: 159
Period size: 19 Copynumber: 5.8 Consensus size: 19
7912184 AATCTTCAGG
7912194 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7912213 AATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
7912232 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7912251 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
7912270 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7912289 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
7912305 AGATATGATT
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 83 1.00
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7912244 original size:38 final size:38
Alignment explanation
Indices: 7912201--7912304 Score: 181
Period size: 38 Copynumber: 2.7 Consensus size: 38
7912191 AGGGATATGC
*
7912201 AATCTTAGATATAATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
7912239 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
7912277 AATCTTAGATATGATATGTAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
7912305 AGATATGATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:7912330 original size:22 final size:21
Alignment explanation
Indices: 7912194--7912330 Score: 114
Period size: 19 Copynumber: 6.9 Consensus size: 21
7912184 AATCTTCAGG
*
7912194 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
7912213 AATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
7912232 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7912251 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
7912270 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
7912289 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
7912311 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
7912331 TTAATTTGTA
Statistics
Matches: 104, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
19 80 0.77
22 12 0.12
23 12 0.12
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:7912337 original size:22 final size:23
Alignment explanation
Indices: 7912293--7912337 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7912283 AGATATGATA
*
7912293 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
7912316 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
7912338 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:7912863 original size:19 final size:17
Alignment explanation
Indices: 7912839--7912884 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 17
7912829 TTCTTTATTT
7912839 TTTATTAATTAGTTTTATA
1 TTTATT-ATT-GTTTTATA
*
7912858 TTTATTATTTTTTTATA
1 TTTATTATTGTTTTATA
7912875 TTTAATTATT
1 TTT-ATTATT
7912885 TTTAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 10 0.40
18 9 0.36
19 6 0.24
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTATTATTGTTTTATA
Found at i:7912873 original size:17 final size:18
Alignment explanation
Indices: 7912851--7912887 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
7912841 TATTAATTAG
7912851 TTTTATATTT-ATTATTT
1 TTTTATATTTAATTATTT
7912868 TTTTATATTTAATTATTT
1 TTTTATATTTAATTATTT
7912886 TT
1 TT
7912888 AAAAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTATATTTAATTATTT
Found at i:7912886 original size:15 final size:15
Alignment explanation
Indices: 7912833--7912886 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
7912823 TTCATTTTCT
*
7912833 TTATTTTTTA-TTAA
1 TTATTTTATATTTAA
7912847 TTAGTTTTATATTTATTA
1 TTA-TTTTATATTTA--A
*
7912865 TTTTTTTATATTTAA
1 TTATTTTATATTTAA
7912880 TTATTTT
1 TTATTTT
7912887 TAAAAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 3 0.09
15 13 0.39
16 3 0.09
17 11 0.33
18 3 0.09
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (15 bp):
TTATTTTATATTTAA
Found at i:7912956 original size:22 final size:21
Alignment explanation
Indices: 7912927--7912987 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
7912917 ATACGCATAT
*
7912927 TTATTTTTTGTAGTATAATATAA
1 TTATTTTTTATA-TAT-ATATAA
* *
7912950 TTATTTTTTATTTATATGTAA
1 TTATTTTTTATATATATATAA
*
7912971 TTATTTTTTATCTATAT
1 TTATTTTTTATATATAT
7912988 GTATATATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 21 0.62
22 3 0.09
23 10 0.29
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (21 bp):
TTATTTTTTATATATATATAA
Found at i:7912997 original size:21 final size:21
Alignment explanation
Indices: 7912947--7912990 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7912937 TAGTATAATA
*
7912947 TAATTATTTTTTATTTATATG
1 TAATTATTTTTTATCTATATG
7912968 TAATTATTTTTTATCTATATG
1 TAATTATTTTTTATCTATATG
7912989 TA
1 TA
7912991 TATATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (21 bp):
TAATTATTTTTTATCTATATG
Found at i:7917786 original size:9 final size:9
Alignment explanation
Indices: 7917772--7917830 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
7917762 GTTCAGATTC
7917772 AAAAAACAA
1 AAAAAACAA
7917781 AAAAAAGC-A
1 AAAAAA-CAA
*
7917790 AAAAAAGAA
1 AAAAAACAA
*
7917799 AAAAAAGAA
1 AAAAAACAA
7917808 AAAAGAA-AA
1 AAAA-AACAA
7917817 AGAAAAAGCAA
1 A-AAAAA-CAA
7917828 AAA
1 AAA
7917831 GAGAGGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
9 32 0.74
10 8 0.19
11 3 0.07
ACGTcount: A:0.85, C:0.05, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAACAA
Found at i:7917818 original size:13 final size:14
Alignment explanation
Indices: 7917781--7917832 Score: 60
Period size: 13 Copynumber: 4.1 Consensus size: 14
7917771 CAAAAAACAA
7917781 AAAAAAGCAAAAA-
1 AAAAAAGCAAAAAG
*
7917794 AAGAAA--AAAAAG
1 AAAAAAGCAAAAAG
7917806 AAAAAAG-AAAAAG
1 AAAAAAGCAAAAAG
7917819 -AAAAAGCAAAAAG
1 AAAAAAGCAAAAAG
7917832 A
1 A
7917833 GAGGCCAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
11 5 0.15
12 11 0.33
13 17 0.52
ACGTcount: A:0.83, C:0.04, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAAAGCAAAAAG
Found at i:7917829 original size:7 final size:6
Alignment explanation
Indices: 7917782--7917832 Score: 52
Period size: 6 Copynumber: 8.2 Consensus size: 6
7917772 AAAAAACAAA
7917782 AAAAAG CAAAAA- AAGAAA- AAAAAG AAAAAAG AAAAAG AAAAAG CAAAAAG
1 AAAAAG -AAAAAG AA-AAAG AAAAAG -AAAAAG AAAAAG AAAAAG -AAAAAG
7917832 A
1 A
7917833 GAGGCCAATG
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.12
6 18 0.45
7 17 0.43
ACGTcount: A:0.82, C:0.04, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:7919178 original size:23 final size:23
Alignment explanation
Indices: 7919152--7919273 Score: 181
Period size: 23 Copynumber: 5.3 Consensus size: 23
7919142 ATAAGTGCAA
7919152 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
7919175 CACTGTTATGTAGTCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
7919198 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
7919221 CACTGTTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
7919244 CACTGAAACGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
7919267 CACTGAT
1 CACTGAT
7919274 CAATAACACT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 86 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:7919219 original size:46 final size:46
Alignment explanation
Indices: 7919152--7919271 Score: 204
Period size: 46 Copynumber: 2.6 Consensus size: 46
7919142 ATAAGTGCAA
* *
7919152 CACTGATATGTAGCCGAAGCTACCACTGTTATGTAGTCAAAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGTTATGTAGCCAAAGCTAC
*
7919198 CACTGAAATGTAGCCGAAGCTACCACTGTTATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGTTATGTAGCCAAAGCTAC
*
7919244 CACTGAAACGTAGCCGAAGCTACCACTG
1 CACTGAAATGTAGCCGAAGCTACCACTG
7919272 ATCAATAACA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGTTATGTAGCCAAAGCTAC
Found at i:7922029 original size:43 final size:43
Alignment explanation
Indices: 7921981--7922073 Score: 161
Period size: 43 Copynumber: 2.2 Consensus size: 43
7921971 AATGGAGTAC
*
7921981 ATTGAAGCCAGTAATTCTACTTCCCTCG-GCAACAGTGGAATAG
1 ATTGAAGCCAGTAATTCTACTTCCCT-GAACAACAGTGGAATAG
7922024 ATTGAAGCCAGTAATTCTACTTCCCTGAACAACAGTGGAATAG
1 ATTGAAGCCAGTAATTCTACTTCCCTGAACAACAGTGGAATAG
7922067 ATTGAAG
1 ATTGAAG
7922074 ATTTCAGATC
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 1 0.02
43 47 0.98
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
ATTGAAGCCAGTAATTCTACTTCCCTGAACAACAGTGGAATAG
Found at i:7922128 original size:175 final size:175
Alignment explanation
Indices: 7921837--7922205 Score: 605
Period size: 175 Copynumber: 2.1 Consensus size: 175
7921827 CCCTATGGTT
* * * *
7921837 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCTCTGGACAACAGTAGAATAGATTGAAGATT
1 ACAGTGGAATAGATTGAAGCCAGTAATTCTACTTCCCTGAACAACAGTAGAATAGATTGAAGATT
* *
7921902 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATGG
66 TCAGATCATATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTCCCTATGG
7921967 TTATAATGGAGTACATTGAAGCCAGTAATTCTACTTCCCTCGG-CA
131 TTATAATGGAGTACATTGAAGCCAGTAATTCTACTTCCCT-GGACA
*
7922012 ACAGTGGAATAGATTGAAGCCAGTAATTCTACTTCCCTGAACAACAGTGGAATAGATTGAAGATT
1 ACAGTGGAATAGATTGAAGCCAGTAATTCTACTTCCCTGAACAACAGTAGAATAGATTGAAGATT
* * * *
7922077 TCAGATCATATCTCCTTTAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTTCCTGTGG
66 TCAGATCATATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTCCCTATGG
*
7922142 TTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACA
131 TTATAATGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACA
*
7922187 ACAGTAGAATAGATTGAAG
1 ACAGTGGAATAGATTGAAG
7922206 ATTTCAGGTC
Statistics
Matches: 180, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
174 2 0.01
175 178 0.99
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (175 bp):
ACAGTGGAATAGATTGAAGCCAGTAATTCTACTTCCCTGAACAACAGTAGAATAGATTGAAGATT
TCAGATCATATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTCCCTATGG
TTATAATGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACA
Found at i:7923396 original size:132 final size:132
Alignment explanation
Indices: 7922012--7923358 Score: 2183
Period size: 132 Copynumber: 10.2 Consensus size: 132
7922002 TCCCTCGGCA
* * *
7922012 ACAGTGGAATAGATTGAAGCCAGTAATTCTACTTCCCTGAACAACAGTGGAATAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
* * * * * *
7922077 TCAGATCATATCTCCTTTAGCAGTAGTGGAGCAAATCGAAGATGGCGGATTTTACCTTCCTGTGG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
7922142 TT
131 TT
* *
7922144 ATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTAGAATAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
* * * *
7922209 TCAGGTCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAAAGGGCAGATTTTACCTCCCTGTGG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
7922274 TT
131 TT
* *
7922276 ACAGTGGAGTGCATTGAAGCCAGTAATTCTACTTCCCTGGACAACAATGGAATAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
* * **
7922341 TCAGGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGTCAGATTTTAAATCCCTGTGG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
7922406 TT
131 TT
* *
7922408 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGTACAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
* * * *
7922473 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGATGGCGGATTTTACCTCCCTATGG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
7922538 TT
131 TT
* * *
7922540 ATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAATGGAATAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
7922605 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
7922670 TT
131 TT
* * *
7922672 ATAGTGGAGTACATTGAAGGCAGTAATTCTACTTCCCTGAACAACAGTGGAATAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
** **
7922737 TCAGATCTTATCTCTTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
7922802 TT
131 TT
*
7922804 ATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
* * *
7922869 TCAGGTATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTTGGC-GAATTTTACCTCCCTGTG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAG-ATTTTACCTCCCTGTG
*
7922933 GTC
130 GTT
* *
7922936 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCGTGGAAAACAGTGGAATAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
* *
7923001 TCAGGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATTTTACCTCCCTGTGG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
7923066 TT
131 TT
*
7923068 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAATGGAATAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
* * *
7923133 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCATATCGAAGATGGAAGATTTTACCTCCCTGTAG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
7923198 TT
131 TT
* *
7923200 ATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGACAACAGTGGAATAGATTGAAGATT
1 ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
* * *
7923265 TCAAATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATTTTACCTCCCTGTGG
66 TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
7923330 TT
131 TT
7923332 ACAGTGGAGTACATTGAAGCCAGTAAT
1 ACAGTGGAGTACATTGAAGCCAGTAAT
7923359 CATATCTCTC
Statistics
Matches: 1125, Mismatches: 88, Indels: 4
0.92 0.07 0.00
Matches are distributed among these distances:
131 1 0.00
132 1124 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (132 bp):
ACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT
TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGG
TT
Found at i:7923750 original size:19 final size:19
Alignment explanation
Indices: 7923722--7923832 Score: 159
Period size: 19 Copynumber: 5.8 Consensus size: 19
7923712 AATCTTCAGG
7923722 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
7923741 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
* *
7923760 AATATATAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
7923779 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
7923798 GATATATAATCTTAGATAT
1 GATATACAATCTTAGATAT
**
7923817 GATATGTAATCTTAGA
1 GATATACAATCTTAGA
7923833 AGATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.39
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:7923771 original size:38 final size:38
Alignment explanation
Indices: 7923723--7923832 Score: 193
Period size: 38 Copynumber: 2.9 Consensus size: 38
7923713 ATCTTCAGGG
*
7923723 ATATACAATCTTAGATATGATATGCAATCTTAGATATA
1 ATATATAATCTTAGATATGATATGCAATCTTAGATATA
*
7923761 ATATATAATCTTAGATATGATATGCAATCTTAGATATG
1 ATATATAATCTTAGATATGATATGCAATCTTAGATATA
*
7923799 ATATATAATCTTAGATATGATATGTAATCTTAGA
1 ATATATAATCTTAGATATGATATGCAATCTTAGA
7923833 AGATATGATT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 69 1.00
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (38 bp):
ATATATAATCTTAGATATGATATGCAATCTTAGATATA
Found at i:7923858 original size:22 final size:21
Alignment explanation
Indices: 7923735--7923858 Score: 120
Period size: 19 Copynumber: 6.2 Consensus size: 21
7923725 ATACAATCTT
*
7923735 AGATATGATATGCAATCTT--
1 AGATATGATATGTAATCTTAG
* *
7923754 AGATATAATATATAATCTT--
1 AGATATGATATGTAATCTTAG
*
7923773 AGATATGATATGCAATCTT--
1 AGATATGATATGTAATCTTAG
*
7923792 AGATATGATATATAATCTT--
1 AGATATGATATGTAATCTTAG
7923811 AGATATGATATGTAATCTTAG
1 AGATATGATATGTAATCTTAG
*
7923832 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TATGTAATCTTAG
7923855 AGAT
1 AGAT
7923859 TTAATTTGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
19 67 0.74
22 12 0.13
23 12 0.13
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (21 bp):
AGATATGATATGTAATCTTAG
Found at i:7923865 original size:22 final size:23
Alignment explanation
Indices: 7923821--7923865 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7923811 AGATATGATA
*
7923821 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
7923844 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
7923866 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:7924381 original size:16 final size:15
Alignment explanation
Indices: 7924362--7924413 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
7924352 ATTTTCTTTA
*
7924362 TTTTTTATTAATTAG
1 TTTTTTATTAATTAT
* *
7924377 TTTTTTATTTATTCT
1 TTTTTTATTAATTAT
7924392 TTTTTATATTTAATTAT
1 TTTTT-TA-TTAATTAT
7924409 TTTTT
1 TTTTT
7924414 AAAAAATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 17 0.57
16 2 0.07
17 11 0.37
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (15 bp):
TTTTTTATTAATTAT
Found at i:7924483 original size:25 final size:25
Alignment explanation
Indices: 7924452--7924532 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
7924442 ATACGCATAT
*
7924452 TTATTTTTT-TGTAGTATA-ATATAA
1 TTATTTTTTATTTA-TATATATATAA
* *
7924476 TTATTTTTTATTTATTTATATGTAA
1 TTATTTTTTATTTATATATATATAA
* * *
7924501 TTATTTTTTATCTATATGTATATAT
1 TTATTTTTTATTTATATATATATAA
7924526 TTATTTT
1 TTATTTT
7924533 AGTATACATA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
24 12 0.26
25 35 0.74
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.65
Consensus pattern (25 bp):
TTATTTTTTATTTATATATATATAA
Found at i:7924598 original size:21 final size:22
Alignment explanation
Indices: 7924574--7924625 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
7924564 TTTTAACTAA
*
7924574 TTTTTATATATATG-AACATAT
1 TTTTTATATAAATGAAACATAT
*
7924595 TTTTT-T-TAAATGCAAATATAT
1 TTTTTATATAAATG-AAACATAT
7924616 TTTTTATATA
1 TTTTTATATA
7924626 CTTTATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 5 0.20
20 1 0.04
21 16 0.64
22 1 0.04
23 2 0.08
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (22 bp):
TTTTTATATAAATGAAACATAT
Found at i:7925664 original size:57 final size:57
Alignment explanation
Indices: 7925574--7925689 Score: 205
Period size: 57 Copynumber: 2.0 Consensus size: 57
7925564 AACTTGTAGA
*
7925574 CCAAAGCTGTTTTTTTAGGTGATCCAATAACACCTTAATAAAAGATTGGTGGCGACT
1 CCAAAGCCGTTTTTTTAGGTGATCCAATAACACCTTAATAAAAGATTGGTGGCGACT
* *
7925631 CCAAAGCCGTTTTTTTAGGTGATCCAATCACACCTTAATAAAATATTGGTGGCGACT
1 CCAAAGCCGTTTTTTTAGGTGATCCAATAACACCTTAATAAAAGATTGGTGGCGACT
7925688 CC
1 CC
7925690 CAATTTTCAT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (57 bp):
CCAAAGCCGTTTTTTTAGGTGATCCAATAACACCTTAATAAAAGATTGGTGGCGACT
Found at i:7937844 original size:335 final size:336
Alignment explanation
Indices: 7937207--7937866 Score: 993
Period size: 335 Copynumber: 2.0 Consensus size: 336
7937197 CTAATGCGAC
* *
7937207 TAAGGCAGACCAATACTTTTAATCACTCTATCAACTTTTAATCCACTAATTTAGGTTTCCACTAA
1 TAAGCCAGACCAATACTTTTAATCACTCTATCAACTTTTAATCCACTAATTCAGGTTTCCACTAA
* * *
7937272 AAACCACAACACAAAGATCTACTTCGCGTAAATACTCCTTCATAATTCTTCCAAAATTAGGGTGT
66 AAACCAAAACACAAAGATCTACTTCGCGTAAATACTCCTTCATAATTCTGCCAAAATTAAGGTGT
* * *
7937337 CCAGCACATTGGCAATTCCATACAAAAATTCTTGACATTATAAAAATCAGAATTAGAAATGGCCA
131 CCAACACATTGGCAATTCCATACAAAAATTCTTGACATTATAAAAATCAGAATTAGAAACGACCA
7937402 AACCTTTGAAGGCACCATTACTCATCAAATGGAATGTCCATGAGTGTTGCATCACTTTCACCCTA
196 AACCTTTGAAGGCACCATTACTCATCAAATGGAATGTCCATGAGTGTTGCATCACTTTCACCCTA
* * * * *
7937467 ATGGACCACTCCCGATGGTCGACCTAGAATTTGTTCGCTATCATCCTGGTCTAACACCACCAGTT
261 ATGGACCACTCCCGATGGTCAACCCAGAACTTGTTCGCTATCAACCTGGTCCAACACCACCAGTT
7937532 TCGCATTCGAG
326 TCGCATTCGAG
* * *
7937543 TAAGCCAGGCCAATACTTTTAATCACTCTATCAGCTTTTAATCCACTAATTCAGGTTTCCA-TTA
1 TAAGCCAGACCAATACTTTTAATCACTCTATCAACTTTTAATCCACTAATTCAGGTTTCCACTAA
* * *
7937607 AAACTAAAACACAATGATCTACTTCGCGTAAATACTTCTTCATAATTCTGCCAAAATTAAGGTGT
66 AAACCAAAACACAAAGATCTACTTCGCGTAAATACTCCTTCATAATTCTGCCAAAATTAAGGTGT
* * * * *
7937672 GCAACACCTTGGTAGTTCCATACAAAAATTCTTGACATTATAAATATCAGAATTAGAAACGACCA
131 CCAACACATTGGCAATTCCATACAAAAATTCTTGACATTATAAAAATCAGAATTAGAAACGACCA
* * * *
7937737 AACCTTTGAGGGCACCATTACTCATCAGAT-GAATCGTCTATGAGTGTTGCATCGCTTTCACCCT
196 AACCTTTGAAGGCACCATTACTCATCAAATGGAAT-GTCCATGAGTGTTGCATCACTTTCACCCT
** **
7937801 GGTGGACCACTCTTGATGGTCAACCCAGAACTTG-TCTGCTATCAACCTGGTCCAACACCACCAG
260 AATGGACCACTCCCGATGGTCAACCCAGAACTTGTTC-GCTATCAACCTGGTCCAACACCACCAG
7937865 TT
324 TT
7937867 CCATATTCCC
Statistics
Matches: 290, Mismatches: 32, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
334 6 0.02
335 227 0.78
336 57 0.20
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (336 bp):
TAAGCCAGACCAATACTTTTAATCACTCTATCAACTTTTAATCCACTAATTCAGGTTTCCACTAA
AAACCAAAACACAAAGATCTACTTCGCGTAAATACTCCTTCATAATTCTGCCAAAATTAAGGTGT
CCAACACATTGGCAATTCCATACAAAAATTCTTGACATTATAAAAATCAGAATTAGAAACGACCA
AACCTTTGAAGGCACCATTACTCATCAAATGGAATGTCCATGAGTGTTGCATCACTTTCACCCTA
ATGGACCACTCCCGATGGTCAACCCAGAACTTGTTCGCTATCAACCTGGTCCAACACCACCAGTT
TCGCATTCGAG
Found at i:7944576 original size:21 final size:22
Alignment explanation
Indices: 7944550--7944592 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7944540 TTAAAGCTAG
*
7944550 TTGAAAT-CTAAATTTGAATTA
1 TTGAAATAATAAATTTGAATTA
7944571 TTGAAATAATAAATTTGAATTA
1 TTGAAATAATAAATTTGAATTA
7944593 ATTTTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (22 bp):
TTGAAATAATAAATTTGAATTA
Found at i:7944685 original size:8 final size:8
Alignment explanation
Indices: 7944672--7944699 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7944662 TATGAATTTT
7944672 AATTTTAA
1 AATTTTAA
7944680 AATTTTAA
1 AATTTTAA
7944688 AATTTTAA
1 AATTTTAA
7944696 AATT
1 AATT
7944700 CAAATCCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
AATTTTAA
Found at i:7945793 original size:16 final size:17
Alignment explanation
Indices: 7945761--7945797 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
7945751 GATGCCCGAT
7945761 AATGTGTTAGTTTTTTTA
1 AATGTGTTAG-TTTTTTA
7945779 AATGTGTTA-TTTTTTA
1 AATGTGTTAGTTTTTTA
7945795 AAT
1 AAT
7945798 TTAAAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.53
18 9 0.47
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (17 bp):
AATGTGTTAGTTTTTTA
Found at i:7947329 original size:21 final size:22
Alignment explanation
Indices: 7947303--7947343 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7947293 ACAAATAAAT
* *
7947303 AATTCTTGT-TTATTTTGTTTG
1 AATTCTCGTATTATTGTGTTTG
7947324 AATTCTCGTATTATTGTGTT
1 AATTCTCGTATTATTGTGTT
7947344 AATATCATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.17, C:0.07, G:0.15, T:0.61
Consensus pattern (22 bp):
AATTCTCGTATTATTGTGTTTG
Found at i:7952636 original size:16 final size:16
Alignment explanation
Indices: 7952584--7952651 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 16
7952574 TTCGTTTTTT
7952584 TATTTTATTTTATTTA
1 TATTTTATTTTATTTA
* *
7952600 T-TTTT-TTAACTATTAA
1 TATTTTATT--TTATTTA
7952616 T-TTTTATTTTATTTA
1 TATTTTATTTTATTTA
*
7952631 TATTTTCATTTATCTTTA
1 TATTTT-ATTT-TATTTA
7952649 TAT
1 TAT
7952652 ATATGTGTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 2 0.05
15 10 0.24
16 15 0.37
17 6 0.15
18 8 0.20
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTTATTTTATTTA
Found at i:7952700 original size:3 final size:3
Alignment explanation
Indices: 7952685--7952763 Score: 72
Period size: 3 Copynumber: 26.7 Consensus size: 3
7952675 TAATATGTGC
* * *
7952685 TAT TAT T-T T-T TAT TAT TAT ATAT TAT TAT TAA AAC TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
7952729 TAT TAT TAT TAT TAG CAT CAT TAT TAA TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7952764 AATACCTTTT
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
2 4 0.06
3 56 0.89
4 3 0.05
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7956497 original size:41 final size:41
Alignment explanation
Indices: 7956440--7956519 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
7956430 AAGCCCAATA
* *
7956440 TTTACAGAGTTGCTGTATAGATTAATTAAATTTTAGATATG
1 TTTACAGAGTTACTGTATAGATGAATTAAATTTTAGATATG
*
7956481 TTTACAGAGTTACTGTATAGATGAATTGAATTTTAGATA
1 TTTACAGAGTTACTGTATAGATGAATTAAATTTTAGATA
7956520 GGTAATCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.42
Consensus pattern (41 bp):
TTTACAGAGTTACTGTATAGATGAATTAAATTTTAGATATG
Found at i:7957526 original size:12 final size:12
Alignment explanation
Indices: 7957509--7957536 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7957499 TTGATAATAA
7957509 ATGGAAAATGAT
1 ATGGAAAATGAT
7957521 ATGGAAAATGAT
1 ATGGAAAATGAT
7957533 ATGG
1 ATGG
7957537 GATTGAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.29, T:0.25
Consensus pattern (12 bp):
ATGGAAAATGAT
Found at i:7961359 original size:22 final size:22
Alignment explanation
Indices: 7961312--7961361 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
7961302 AGATTCCCAA
7961312 TTTCAAAGAATCAATAAACCTT
1 TTTCAAAGAATCAATAAACCTT
* *
7961334 TTTCGAAGAATTAATAAA-CTT
1 TTTCAAAGAATCAATAAACCTT
7961355 CTTTCAA
1 -TTTCAA
7961362 GGTGTCGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (22 bp):
TTTCAAAGAATCAATAAACCTT
Found at i:7975263 original size:22 final size:22
Alignment explanation
Indices: 7975235--7975276 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7975225 TTATAAAAAT
7975235 AAAAAATAATCTAAAAAATAAA
1 AAAAAATAATCTAAAAAATAAA
* *
7975257 AAAAAATATTTTAAAAAATA
1 AAAAAATAATCTAAAAAATA
7975277 TAATTGAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (22 bp):
AAAAAATAATCTAAAAAATAAA
Found at i:7976173 original size:30 final size:28
Alignment explanation
Indices: 7976137--7976198 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
7976127 AAAAAGTCGG
7976137 TTTTTTTCAAAATTTACCGAAATGGGCCGA
1 TTTTTTT-AAAATTTACCGAAATGGGCC-A
** *
7976167 TTTTTTTATTATTTACCGGAATGGGCCA
1 TTTTTTTAAAATTTACCGAAATGGGCCA
7976195 TTTT
1 TTTT
7976199 CCGGGAAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 5 0.17
29 17 0.59
30 7 0.24
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (28 bp):
TTTTTTTAAAATTTACCGAAATGGGCCA
Found at i:7976510 original size:22 final size:22
Alignment explanation
Indices: 7976482--7976532 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
7976472 TTTCCTCTCT
7976482 AATTCTCTCAATTTCCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
7976504 AATTCTCTCAATTTCCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
7976526 AATTCTC
1 AATTCTC
7976533 CCAAACCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.31, G:0.00, T:0.41
Consensus pattern (22 bp):
AATTCTCTCAATTTCCTTCCAA
Found at i:7976597 original size:10 final size:10
Alignment explanation
Indices: 7976570--7976635 Score: 60
Period size: 10 Copynumber: 6.5 Consensus size: 10
7976560 CCTCAATTTC
7976570 ATTTTTTTAA
1 ATTTTTTTAA
** *
7976580 ATAATTTTAT
1 ATTTTTTTAA
*
7976590 ATTTTTTTAT
1 ATTTTTTTAA
7976600 ATTTTTTTAAA
1 ATTTTTTT-AA
**
7976611 ATAATTTTAA
1 ATTTTTTTAA
*
7976621 ATTTTTTTAT
1 ATTTTTTTAA
7976631 ATTTT
1 ATTTT
7976636 CATCAATGGC
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
10 37 0.84
11 7 0.16
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:7976606 original size:31 final size:31
Alignment explanation
Indices: 7976570--7976635 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
7976560 CCTCAATTTC
*
7976570 ATTTTTTT-AAATAATTTTATATTTTTTTAT
1 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
7976600 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
1 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
7976631 ATTTT
1 ATTTT
7976636 CATCAATGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 8 0.24
31 26 0.76
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (31 bp):
ATTTTTTTAAAATAATTTTAAATTTTTTTAT
Found at i:7976747 original size:14 final size:15
Alignment explanation
Indices: 7976728--7976757 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7976718 TTTTTAAATA
7976728 TTATTTA-ATATTTT
1 TTATTTATATATTTT
7976742 TTATTTATATATTTT
1 TTATTTATATATTTT
7976757 T
1 T
7976758 AGATAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTTATATATTTT
Found at i:7977728 original size:7 final size:7
Alignment explanation
Indices: 7977716--7977740 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7977706 AGTCGATTGA
7977716 TATTTAG
1 TATTTAG
7977723 TATTTAG
1 TATTTAG
7977730 TATTTAG
1 TATTTAG
7977737 TATT
1 TATT
7977741 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:7978858 original size:25 final size:24
Alignment explanation
Indices: 7978830--7978898 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 24
7978820 TTTAAATTTA
7978830 TTATCTGATGTAATAAAATAGAAGT
1 TTAT-TGATGTAATAAAATAGAAGT
* * *
7978855 TTATTTAATATAATAAAATATAAGT
1 TTA-TTGATGTAATAAAATAGAAGT
7978880 TCTATTCGATGTAATAAAA
1 T-TATT-GATGTAATAAAA
7978899 ATCCTAATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
25 23 0.64
26 13 0.36
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.39
Consensus pattern (24 bp):
TTATTGATGTAATAAAATAGAAGT
Found at i:7978917 original size:18 final size:17
Alignment explanation
Indices: 7978894--7978942 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
7978884 TTCGATGTAA
*
7978894 TAAAAATCCTAATTTAAT
1 TAAAAA-CCTAACTTAAT
7978912 TAAAAACTCTAACTTAATT
1 TAAAAAC-CTAACTTAA-T
*
7978931 TAAAACCCTAAC
1 TAAAAACCTAAC
7978943 CCTAACCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 1 0.04
18 19 0.70
19 7 0.26
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAAACCTAACTTAAT
Found at i:7978964 original size:29 final size:29
Alignment explanation
Indices: 7978920--7979000 Score: 144
Period size: 29 Copynumber: 2.8 Consensus size: 29
7978910 ATTAAAAACT
* *
7978920 CTAACTTAATTTAAAACCCTAACCCTAAC
1 CTAATTTAATTAAAAACCCTAACCCTAAC
7978949 CTAATTTAATTAAAAACCCTAACCCTAAC
1 CTAATTTAATTAAAAACCCTAACCCTAAC
7978978 CTAATTTAATTAAAAACCCTAAC
1 CTAATTTAATTAAAAACCCTAAC
7979001 TTAATTAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.28
Consensus pattern (29 bp):
CTAATTTAATTAAAAACCCTAACCCTAAC
Found at i:7978992 original size:76 final size:76
Alignment explanation
Indices: 7978901--7979047 Score: 267
Period size: 76 Copynumber: 1.9 Consensus size: 76
7978891 TAATAAAAAT
* *
7978901 CCTAATTTAATTAAAAACTCTAACTTAATTTAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
1 CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
7978966 CCTAACCCTAA
66 CCTAACCCTAA
*
7978977 CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAT
1 CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
7979042 CCTAAC
66 CCTAAC
7979048 TTAATTAAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 68 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (76 bp):
CCTAATTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
CCTAACCCTAA
Found at i:7978999 original size:47 final size:47
Alignment explanation
Indices: 7978948--7979141 Score: 343
Period size: 47 Copynumber: 4.1 Consensus size: 47
7978938 CTAACCCTAA
* *
7978948 CCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
* *
7978995 CCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAT
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
*
7979042 CCTAACTTAATTAAAAACTCTAACCCTAACCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
7979089 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
7979136 CCTAAC
1 CCTAAC
7979142 CCTAACCTAA
Statistics
Matches: 141, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 141 1.00
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (47 bp):
CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
Found at i:7979004 original size:18 final size:18
Alignment explanation
Indices: 7978977--7979112 Score: 102
Period size: 18 Copynumber: 8.3 Consensus size: 18
7978967 CTAACCCTAA
*
7978977 CCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
7978995 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
**
7979013 CCTAAC---CCT---AA-
1 CCTAACTTAATTAAAAAC
* *
7979024 CCTAATTTAATTAAAAAT
1 CCTAACTTAATTAAAAAC
7979042 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
* **
7979060 TCTAAC---CCT---AA-
1 CCTAACTTAATTAAAAAC
7979071 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
7979089 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
7979107 CCTAAC
1 CCTAAC
7979113 CCTAACCTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
11 10 0.11
12 4 0.04
14 2 0.02
15 2 0.02
17 4 0.04
18 68 0.76
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAC
Found at i:7979121 original size:29 final size:29
Alignment explanation
Indices: 7979089--7979151 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
7979079 AATTAAAAAC
7979089 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
7979118 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
7979147 CCTAA
1 CCTAA
7979152 TTTTACATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (29 bp):
CCTAACTTAATTAAAAACCCTAACCCTAA
Found at i:7979208 original size:55 final size:55
Alignment explanation
Indices: 7979149--7979281 Score: 248
Period size: 55 Copynumber: 2.4 Consensus size: 55
7979139 AACCCTAACC
7979149 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTGTTGAACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTGTTGAACTTAA
* *
7979204 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTGTTGAACTTAA
7979259 TAATTTTACATAATTTGATAATT
1 TAATTTTACATAATTTGATAATT
7979282 ATACATAATT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 76 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.44
Consensus pattern (55 bp):
TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTGTTGAACTTAA
Found at i:7979263 original size:37 final size:37
Alignment explanation
Indices: 7979221--7979340 Score: 106
Period size: 37 Copynumber: 3.3 Consensus size: 37
7979211 ACATAATTTG
7979221 ATAATTTTACTAACCATTAACACAATTTTTGGACTTA
1 ATAATTTTACTAACCATTAACACAATTTTTGGACTTA
** * * * * *
7979258 ATAATTTTAC-ATA--ATT-TGATAATTATACAT-AATTTG
1 ATAATTTTACTA-ACCATTAACACAATT-T--TTGGACTTA
7979294 ATAATTTTACTAACCATTAACACAATTTTTGGACTTA
1 ATAATTTTACTAACCATTAACACAATTTTTGGACTTA
7979331 ATAATTTTAC
1 ATAATTTTAC
7979341 ATAATTTGAT
Statistics
Matches: 60, Mismatches: 14, Indels: 18
0.65 0.15 0.20
Matches are distributed among these distances:
34 5 0.08
35 4 0.07
36 16 0.27
37 26 0.43
38 4 0.07
39 5 0.08
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.43
Consensus pattern (37 bp):
ATAATTTTACTAACCATTAACACAATTTTTGGACTTA
Found at i:7979280 original size:73 final size:73
Alignment explanation
Indices: 7979203--7979365 Score: 308
Period size: 73 Copynumber: 2.2 Consensus size: 73
7979193 GTTGAACTTA
*
7979203 ATAATTTTACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAC
1 ATAATTATACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAC
7979268 ATAATTTG
66 ATAATTTG
7979276 ATAATTATACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAC
1 ATAATTATACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAC
7979341 ATAATTTG
66 ATAATTTG
*
7979349 ATAATTATACCTAATTT
1 ATAATTATACATAATTT
7979366 AATTAAAAAA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 88 1.00
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (73 bp):
ATAATTATACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAC
ATAATTTG
Found at i:7979281 original size:18 final size:18
Alignment explanation
Indices: 7979258--7979303 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
7979248 TTTGGACTTA
7979258 ATAATTTTACATAATTTG
1 ATAATTTTACATAATTTG
*
7979276 ATAATTATACATAATTTG
1 ATAATTTTACATAATTTG
7979294 ATAATTTTAC
1 ATAATTTTAC
7979304 TAACCATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (18 bp):
ATAATTTTACATAATTTG
Found at i:7979335 original size:55 final size:55
Alignment explanation
Indices: 7979276--7979468 Score: 183
Period size: 55 Copynumber: 3.3 Consensus size: 55
7979266 ACATAATTTG
* *
7979276 ATAATTATACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTA
1 ATAATTATACATAATTTGATAATTTTACTAATCATTAACAAAATTTTTGGACTTA
* * * *
7979331 ATAATTTTACATAATTTGATAATTATACCTAATTTAATTAA-AAAAATTTTGG-CTTA
1 ATAATTATACATAATTTGATAATTTTA-CTAA--TCATTAACAAAATTTTTGGACTTA
*
7979387 ATAATTTTATATAATTTTACATAATTTGATAATTTTACTAATCATTAACAAAATTTTGGGACTTA
1 AT-A----AT-T-A---TACATAATTTGATAATTTTACTAATCATTAACAAAATTTTTGGACTTA
*
7979452 ATAATTTTACATAATTT
1 ATAATTATACATAATTT
7979469 TACATAATGT
Statistics
Matches: 111, Mismatches: 12, Indels: 30
0.73 0.08 0.20
Matches are distributed among these distances:
55 35 0.32
56 10 0.09
57 10 0.09
58 5 0.05
59 1 0.01
60 2 0.02
61 2 0.02
62 1 0.01
63 6 0.05
64 10 0.09
65 10 0.09
66 19 0.17
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (55 bp):
ATAATTATACATAATTTGATAATTTTACTAATCATTAACAAAATTTTTGGACTTA
Found at i:7979354 original size:18 final size:18
Alignment explanation
Indices: 7979331--7979365 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7979321 TTTGGACTTA
*
7979331 ATAATTTTACATAATTTG
1 ATAATTATACATAATTTG
*
7979349 ATAATTATACCTAATTT
1 ATAATTATACATAATTT
7979366 AATTAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.49
Consensus pattern (18 bp):
ATAATTATACATAATTTG
Found at i:7979402 original size:10 final size:10
Alignment explanation
Indices: 7979387--7979476 Score: 51
Period size: 10 Copynumber: 8.5 Consensus size: 10
7979377 TTTTGGCTTA
*
7979387 ATAATTTTAT
1 ATAATTTTAC
7979397 ATAATTTTAC
1 ATAATTTTAC
*
7979407 ATAA-TTT-G
1 ATAATTTTAC
7979415 ATAATTTTAC
1 ATAATTTTAC
*
7979425 -TAATCATTAAC
1 ATAAT--TTTAC
*
7979436 AAAATTTTGGGAC
1 ATAATTTT---AC
7979449 TTAATAATTTTAC
1 ---ATAATTTTAC
7979462 ATAATTTTAC
1 ATAATTTTAC
7979472 ATAAT
1 ATAAT
7979477 GTTAGATTTG
Statistics
Matches: 62, Mismatches: 7, Indels: 22
0.68 0.08 0.24
Matches are distributed among these distances:
8 4 0.06
9 10 0.16
10 30 0.48
11 4 0.06
12 3 0.05
13 4 0.06
16 7 0.11
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:7979408 original size:66 final size:65
Alignment explanation
Indices: 7979331--7979476 Score: 215
Period size: 65 Copynumber: 2.2 Consensus size: 65
7979321 TTTGGACTTA
7979331 ATAATTTTACATAATTTGATAATTATACCTAATTTAATTAAAAAAATTTT-GG-CTTAATAATTT
1 ATAATTTTACATAATTTGATAATTATA-CTAA--TAATTAAAAAAATTTTGGGACTTAATAATTT
*
7979394 TAT
63 TAC
* * *
7979397 ATAATTTTACATAATTTGATAATTTTACTAATCATTAACAAAATTTTGGGACTTAATAATTTTAC
1 ATAATTTTACATAATTTGATAATTATACTAATAATTAAAAAAATTTTGGGACTTAATAATTTTAC
7979462 ATAATTTTACATAAT
1 ATAATTTTACATAAT
7979477 GTTAGATTTG
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
63 14 0.19
64 2 0.03
65 32 0.43
66 26 0.35
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.46
Consensus pattern (65 bp):
ATAATTTTACATAATTTGATAATTATACTAATAATTAAAAAAATTTTGGGACTTAATAATTTTAC
Found at i:7982875 original size:125 final size:124
Alignment explanation
Indices: 7982580--7982929 Score: 562
Period size: 125 Copynumber: 2.8 Consensus size: 124
7982570 TCCAAACTTG
*
7982580 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
7982645 TAGAAGCGATTTTATACTATTT-CTTCAGAAAGGTC-AAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGC-TCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
* * *
7982703 CTACTGTAGCAAAATCACGTCCACGAGTGCGCGATTTCACAATTTCTTCTTAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* *
7982768 TAGAGGCGATTTTATACTATTTGCTCAGAAATGTCAAAAAAAATTTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAA-TTATTTCTTACATGAC
* *
7982828 TTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTAG
1 CTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
7982893 TAAAAGCGATTTTATACTATTTGAC-CAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTG-CTCAGAAACGTCAA
7982930 CTCGAAATAA
Statistics
Matches: 210, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
123 93 0.44
124 8 0.04
125 108 0.51
126 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (124 bp):
CTACTGTAGCAAAATCGCGTCCACGAGAGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
Found at i:7987125 original size:30 final size:30
Alignment explanation
Indices: 7987086--7987151 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
7987076 TTACAATTAG
* **
7987086 ATCATTGAACTATTCAAAAATTTTATTTAA
1 ATCACTGAACTATTCAAAAAAATTATTTAA
* *
7987116 GTCACTGAACTATTTAAAAAAATTATTTAA
1 ATCACTGAACTATTCAAAAAAATTATTTAA
7987146 ATCACT
1 ATCACT
7987152 AGCCTATTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (30 bp):
ATCACTGAACTATTCAAAAAAATTATTTAA
Found at i:7991930 original size:15 final size:15
Alignment explanation
Indices: 7991908--7991943 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
7991898 TTTTCACAAA
7991908 CATTAATAAGCATTT
1 CATTAATAAGCATTT
*
7991923 CTTTAATAAGCATTT
1 CATTAATAAGCATTT
7991938 CATTAA
1 CATTAA
7991944 CGCATTGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.42
Consensus pattern (15 bp):
CATTAATAAGCATTT
Found at i:8006915 original size:19 final size:19
Alignment explanation
Indices: 8006871--8006911 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8006861 GTTTTTTTAA
8006871 ATTTAAAAATATAATTTTC
1 ATTTAAAAATATAATTTTC
* *
8006890 ATATAAAAATATGATTTT-
1 ATTTAAAAATATAATTTTC
8006908 ATTT
1 ATTT
8006912 TAAATATGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
18 3 0.16
19 16 0.84
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
ATTTAAAAATATAATTTTC
Found at i:8007075 original size:23 final size:27
Alignment explanation
Indices: 8007058--8007114 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
8007048 ACAATTAAAA
8007058 TAAAAT-AAAATTTTCAATTCAAATAT
1 TAAAATAAAAATTTTCAATTCAAATAT
* * *
8007084 TATAATAAAAATTTTCAACTCATA-AT
1 TAAAATAAAAATTTTCAATTCAAATAT
8007110 TAAAA
1 TAAAA
8007115 CATTTTTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (27 bp):
TAAAATAAAAATTTTCAATTCAAATAT
Found at i:8007927 original size:5 final size:5
Alignment explanation
Indices: 8007917--8007959 Score: 50
Period size: 5 Copynumber: 8.0 Consensus size: 5
8007907 TATAAAATCA
*
8007917 ATAAT ATAAT ATAAT ATAAT ATAAAA ATAATT ATAATT ATAAT
1 ATAAT ATAAT ATAAT ATAAT AT-AAT ATAA-T ATAA-T ATAAT
8007960 TATTGTTAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 20 0.59
6 14 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:8009773 original size:6 final size:6
Alignment explanation
Indices: 8009739--8009772 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
8009729 CAAATGGATA
*
8009739 ATTTCC ATTTCC ATTTCC ATTTCC ATTTTC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
8009773 TTGGAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:8011242 original size:20 final size:20
Alignment explanation
Indices: 8011217--8011256 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8011207 ATTTTTAATA
8011217 ATTTTT-AATTTTTTAAAAAT
1 ATTTTTGAA-TTTTTAAAAAT
8011237 ATTTTTGAATTTTTAAAAAT
1 ATTTTTGAATTTTTAAAAAT
8011257 TTAAAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
ATTTTTGAATTTTTAAAAAT
Found at i:8013100 original size:16 final size:17
Alignment explanation
Indices: 8013079--8013120 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
8013069 ATAAATATTA
8013079 ATAATTTTATA-TAAAC
1 ATAATTTTATACTAAAC
**
8013095 ATAATTAAATACTAAAC
1 ATAATTTTATACTAAAC
8013112 ATAACTTTT
1 ATAA-TTTT
8013121 GTAAATGACA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 9 0.45
17 9 0.45
18 2 0.10
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (17 bp):
ATAATTTTATACTAAAC
Found at i:8013433 original size:84 final size:84
Alignment explanation
Indices: 8013306--8013478 Score: 258
Period size: 84 Copynumber: 2.1 Consensus size: 84
8013296 AGTTGTCATA
* *
8013306 TTATTATTCACCTATGGTGCATGAGACTTATACATCGATAGTGCATCAAACATTCTCCT-TTTTT
1 TTATTATTCACCTATGGTGCATGAGACTTATACACCGACAGTGCATCAAACATTCT-CTATTTTT
*
8013370 TAATGCATGTCATATTTATG
65 TAATGCATGCCATATTTATG
* * * **
8013390 TTATTATTCACCTATGGTGCATGGGACTTGTGCACCGACAGTGCATCAAGTATTCTCTATTTTTT
1 TTATTATTCACCTATGGTGCATGAGACTTATACACCGACAGTGCATCAAACATTCTCTATTTTTT
8013455 AATGCATGCCATATTTATG
66 AATGCATGCCATATTTATG
8013474 TTATT
1 TTATT
8013479 TTTGTATCAT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
83 2 0.03
84 78 0.98
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (84 bp):
TTATTATTCACCTATGGTGCATGAGACTTATACACCGACAGTGCATCAAACATTCTCTATTTTTT
AATGCATGCCATATTTATG
Found at i:8023216 original size:21 final size:21
Alignment explanation
Indices: 8023192--8023234 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8023182 ATTTTTTACC
*
8023192 ATTTCTGACCTAGGTATCGAT
1 ATTTCTGACATAGGTATCGAT
* * *
8023213 ATTTTTGGCATTGGTATCGAT
1 ATTTCTGACATAGGTATCGAT
8023234 A
1 A
8023235 ATTGTTATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (21 bp):
ATTTCTGACATAGGTATCGAT
Found at i:8024455 original size:53 final size:53
Alignment explanation
Indices: 8024353--8024458 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 53
8024343 ACAAGTAAGC
* * **
8024353 TTTACTAAAGCTTAGTAAGTTCAACGGTTAAAATGATAAACTTGTCGTATAAA
1 TTTACTAAAGCTTAGTAAGTTCAACCGTTAAAATGATAAAATTACCGTATAAA
8024406 TTTACTAAAGCTTAGTAAGTTCAACCGTTAAAATGATAAAATTACCGTATAAA
1 TTTACTAAAGCTTAGTAAGTTCAACCGTTAAAATGATAAAATTACCGTATAAA
8024459 CACATAAATC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (53 bp):
TTTACTAAAGCTTAGTAAGTTCAACCGTTAAAATGATAAAATTACCGTATAAA
Done.