Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 29 of 214
Found at i:8032743 original size:25 final size:25
Alignment explanation
Indices: 8032715--8032763 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
8032705 GTTAAGGCCC
8032715 TAATGCTTACTGTTACTGAAATGGA
1 TAATGCTTACTGTTACTGAAATGGA
8032740 TAATGCTTACTGTTACTGAAATGG
1 TAATGCTTACTGTTACTGAAATGG
8032764 GCTAAGGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (25 bp):
TAATGCTTACTGTTACTGAAATGGA
Found at i:8033758 original size:36 final size:34
Alignment explanation
Indices: 8033707--8033777 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 34
8033697 ATATGATTTT
*
8033707 TCAAATACATATGCCAAAAGCATATATTTATACTTA
1 TCAAATACATATGCCAAAAGCACATA--TATACTTA
* * *
8033743 TCAACTACATGTGCCAAATGCACATATATACTTA
1 TCAAATACATATGCCAAAAGCACATATATACTTA
8033777 T
1 T
8033778 AATCCACATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 9 0.29
36 22 0.71
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (34 bp):
TCAAATACATATGCCAAAAGCACATATATACTTA
Found at i:8033797 original size:34 final size:35
Alignment explanation
Indices: 8033713--8033808 Score: 97
Period size: 34 Copynumber: 2.7 Consensus size: 35
8033703 TTTTTCAAAT
* * * *
8033713 ACATATGCCAAAAGCATATATTTATACTTATCAACT
1 ACATATGCCAAATGCA-ACATATATACTTATCAACC
*
8033749 ACATGTGCCAAATGC-ACATATATACTTAT-AATCC
1 ACATATGCCAAATGCAACATATATACTTATCAA-CC
*
8033783 ACATATGCCGAATGCATACATATATA
1 ACATATGCCAAATGCA-ACATATATA
8033809 TATCCAACAA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
33 2 0.04
34 26 0.52
36 22 0.44
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (35 bp):
ACATATGCCAAATGCAACATATATACTTATCAACC
Found at i:8034041 original size:41 final size:41
Alignment explanation
Indices: 8033981--8034085 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
8033971 TTTAAACAGA
8033981 TTCACTGGCACTTTA-CCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACTGGCAC-TTAGCCTGCTAGGCTTATAGCCTGATTCAG
8034022 TTCACTGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACTGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
* *
8034063 ATCACCGGCACTTAGCCTGCTAG
1 TTCACTGGCACTTAGCCTGCTAG
8034086 ACGTAAAGTC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 3 0.05
41 58 0.95
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (41 bp):
TTCACTGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
Found at i:8044912 original size:22 final size:21
Alignment explanation
Indices: 8044885--8044925 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
8044875 CCTTGGATGT
8044885 TTTTAA-GTTGTTTGTAAGATTC
1 TTTTAAGGTT-TTTG-AAGATTC
8044907 TTTTAAGGTTTTTGAAGAT
1 TTTTAAGGTTTTTGAAGAT
8044926 GGGCAGTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 10 0.56
23 3 0.17
ACGTcount: A:0.24, C:0.02, G:0.20, T:0.54
Consensus pattern (21 bp):
TTTTAAGGTTTTTGAAGATTC
Found at i:8050266 original size:30 final size:30
Alignment explanation
Indices: 8050223--8050281 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
8050213 CTTAACAAGC
8050223 AAATGCCTCTAAAATAATAACAAAATTAAT
1 AAATGCCTCTAAAATAATAACAAAATTAAT
* * *
8050253 AAATGTCTTTAAAATAATAATAAAATTAA
1 AAATGCCTCTAAAATAATAACAAAATTAA
8050282 CAATAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAT
Found at i:8051280 original size:18 final size:16
Alignment explanation
Indices: 8051252--8051320 Score: 66
Period size: 18 Copynumber: 3.9 Consensus size: 16
8051242 TTAATTTTTT
*
8051252 AAAATTTAAAAATTTAA
1 AAAATTAAAAAATTT-A
8051269 AAAATATAAAAATATTTTTA
1 AAAAT-TAAAAA-A--TTTA
8051289 AAAATTAAAAAATCATTA
1 AAAATTAAAAAAT--TTA
8051307 AAAATTAAAAAATT
1 AAAATTAAAAAATT
8051321 ATAATTTTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
16 2 0.04
17 5 0.11
18 22 0.49
19 7 0.16
20 6 0.13
21 3 0.07
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATTAAAAAATTTA
Found at i:8051321 original size:8 final size:8
Alignment explanation
Indices: 8051252--8051321 Score: 50
Period size: 8 Copynumber: 8.0 Consensus size: 8
8051242 TTAATTTTTT
*
8051252 AAAATTTA
1 AAAAATTA
*
8051260 AAAATTTA
1 AAAAATTA
8051268 AAAAATATA
1 AAAAAT-TA
*
8051277 AAAATATTTTT
1 AAAA-A--TTA
8051288 AAAAATTA
1 AAAAATTA
*
8051296 AAAAATCATT
1 AAAAAT--TA
8051306 AAAAATTA
1 AAAAATTA
8051314 AAAAATTA
1 AAAAATTA
8051322 TAATTTTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
8 30 0.59
9 6 0.12
10 9 0.18
11 5 0.10
12 1 0.02
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAAATTA
Found at i:8053851 original size:629 final size:623
Alignment explanation
Indices: 8052642--8054388 Score: 2303
Period size: 628 Copynumber: 2.7 Consensus size: 623
8052632 TTAAGTAGAA
* * *
8052642 ATTTCCATGTCATATTTACACA-GATAGAAATTTTTTATATTACCTAATTTAGTTTTCGTTGTGG
1 ATTTCCATGCCATATTTACACATGATAGAAA--TTTCATATTACCTAATTTAGTTATCGTTGTGG
***
8052706 TTGATAATAACAAGAAAAACTTAGGATGGATATTTTGATAAGCAGAAAAGGAGACAC-AAAATAT
64 TTGATAATAACAAGAAAAACTTAGGACAAATATTTTGATAAGCAG-AAAGGAGACACGAAAA-AT
* * * * * *
8052770 TTTGATGTATACCGAAACGACATGATAAAGAATGATATAAAAGTTGATGGCTTCTAAAAGGGCAC
127 TTTGATGTATACAGAAACAACATGATAAAGAAGGATATAAAAGTTGATGGCTTCTGAAAGGACAT
* * * * *
8052835 TAATGAATCAAAAGTTTTATATCTTATATCTGTGGAGGAAAATTGAAAAAGAGAGAGAGAGAGGA
192 TGATGAATCAAAAGTTTTATTTGTTATATATGTGG-GGAAAATTGAAAAA-A-A-A-AAAGAGGA
* * * *
8052900 GGATATGATATATGTATATGTATATTAGTGGATTAATTGGAATAAGAATATAAATGGGATTAGAA
252 GGATATGATATATGTATATGTATATAAGTGGATTGATTAG-A-AAGAATATAAAT-GGATTGGAA
*
8052965 TTACCTTGGT-GGAAA-A---ATAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCT
314 TTACCTTGGTAGGAAATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCT
* *
8053025 ACCACCAGAATTGAAAAACTCTCACCACTATTGGTTCTTCTCATTTCCTCCATAGATGAAATTGG
379 ACCACCAAAATTG-AAAACTCTCACCACAATT-G---TT-TC--TT-CT-C--AGATGAAATTGG
* *
8053090 ATATGGGATTGATAGTTATGAGATAAAAAGAGAGAGGGGCTTTATGATATATTATTAGACCCAAA
432 GTATGGGATTGATAGTTATGAGATAAAAAGAGAGAGAGGCTTTATGATATATTATTAGACCCAAA
** *
8053155 AAAATTTAACCCCAAACTATTAACAAATGCCTTAAACAAACCACATTGCCACCTTAACATCATGT
497 AAAATTTAACCCCAAACTATTAACAAATGCCTTAAACAAACCACATCACCACCTTAACACCATGT
* * *
8053220 TTGGTTCATCTGAATAACTAAGCCATTCTGGGTGTATAGATCTAAATTAATACCAGCT-GATTT
562 TTGGTTCATCTGAATAACTAAGCCATTCCGGCTGTATACATCT-AATTAATACCAG-TAGATTT
* *
8053283 ATTTCCATGCCATATTTACACATGAATAGAAATTTACATATTATCTAATTTAGTAATCGTTGTGG
1 ATTTCCATGCCATATTTACACATG-ATAGAAATTT-CATATTACCTAATTTAGTTATCGTTGTGG
* * *
8053348 TTGATAATAACAAGAAAAACTTAAGACATATATTTTGATAAGGAGAAAGGAGACACGAAAAATTT
64 TTGATAATAACAAGAAAAACTTAGGACAAATATTTTGATAAGCAGAAAGGAGACACGAAAAATTT
*
8053413 TGATGTATACAGAAACAACATGATAAAGAAGGATATAAAAGTTGATGGCTTCTGAAAGGATATTG
129 TGATGTATACAGAAACAACATGATAAAGAAGGATATAAAAGTTGATGGCTTCTGAAAGGACATTG
* * **
8053478 ATGAATCAAAAGTTTTATTTGATATATATGTAAGGGAAAATTGAAAGAAAAAAAACTGGAGGATA
194 ATGAATCAAAAGTTTTATTTGTTATATATGT-GGGGAAAATTGAAA-AAAAAAAAGAGGAGGATA
8053543 TGATATATGTATATGTATATAAGTGGATTGATT-G-AAGAATATAAAGTGGATTGGAATTACCTT
257 TGATATATGTATATGTATATAAGTGGATTGATTAGAAAGAATATAAA-TGGATTGGAATTACCTT
*
8053606 GGTAGGAGAATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCTACCACT
321 GGTAGGA-AATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCTACCACC
8053671 AAAATTGAAAAGCTCTCACCACAATTGTTTCTTCTCAGATGAAATTGGGTATGGGATTGATAGTT
385 AAAATTGAAAA-CTCTCACCACAATTGTTTCTTCTCAGATGAAATTGGGTATGGGATTGATAGTT
*
8053736 ATGAGATAAAAAGAGAGAGAAGG-TTTATGATATATTATTAGACCCAAAAAGATTTAACCCCAAA
449 ATGAGATAAAAAGAGAGAG-AGGCTTTATGATATATTATTAGACCCAAAAAAATTTAACCCCAAA
* *
8053800 TTATTAACAAATGTCTTAAACAAACCACATCACCACCTTAACACCATGTTTGGTTCATCTGAATA
513 CTATTAACAAATGCCTTAAACAAACCACATCACCACCTTAACACCATGTTTGGTTCATCTGAATA
* * *
8053865 ACTAAGCCATTCCGGCTGTTTACATCTGATTAATACTAGTAGATTT
578 ACTAAGCCATTCCGGCTGTATACATCTAATTAATACCAGTAGATTT
* * *
8053911 GTTTCCATGCCATATTTACACATGGATAGAAATTTCTATATTACCTAATTTAGTTATCATCGTGG
1 ATTTCCATGCCATATTTACACAT-GATAGAAATTTC-ATATTACCTAATTTAGTTATCGTTGTGG
* * * *
8053976 TCGATAATAACAAGAAAAATTTAGGACAAATTTTTTGATAAGTAGAAAGGAGACACGAAAAATTT
64 TTGATAATAACAAGAAAAACTTAGGACAAATATTTTGATAAGCAGAAAGGAGACACGAAAAATTT
* * * * *
8054041 TGATGTATACAGAAACAACATAATAAAAAAGAATATAAAAGTTAATGGCTCCTGAAAGGACATTG
129 TGATGTATACAGAAACAACATGATAAAGAAGGATATAAAAGTTGATGGCTTCTGAAAGGACATTG
* * *
8054106 ATGAATCAAAAGTTTTATTTGTTATATATGTGGGGAAAAATTGAAAAAAGAGAGGAGGACATGGT
194 ATGAATCAAAAGTTTTATTTGTTATATATGTGGGG-AAAATTGAAAAAAAAAAAGAGG--A-GG-
* * *
8054171 ATATG-TATATGCATATGCATATAAGTGGATTGATTGAAGTAAGAATATAAATGAGATTGGAATT
254 ATATGATATATGTATATGTATATAAGTGGATTGATT--AGAAAGAATATAAATG-GATTGGAATT
* * *
8054235 ACCTTGGTAGGAAAATAGTTGTAGCATTGATGCTAATAACATGAGAGAGGTTGTGTCATGATTTG
316 ACCTTGGTAGG-AAATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCTA
*** * * *
8054300 CCACCAGAACCGGAAAACTCTAACCACAATTGTTTCTTCTCATATGAAATTGGGTATGAGATTGA
380 CCACCA-AAATTGAAAACTCTCACCACAATTGTTTCTTCTCAGATGAAATTGGGTATGGGATTGA
*
8054365 TAGTTATGAGATAAAAAGAAAGAG
444 TAGTTATGAGATAAAAAGAGAGAG
8054389 GGAGTTTATG
Statistics
Matches: 992, Mismatches: 84, Indels: 67
0.87 0.07 0.06
Matches are distributed among these distances:
627 12 0.01
628 229 0.23
629 172 0.17
630 32 0.03
631 6 0.01
632 2 0.00
633 5 0.01
634 183 0.18
635 14 0.01
636 4 0.00
637 2 0.00
638 41 0.04
639 6 0.01
640 68 0.07
641 136 0.14
642 73 0.07
643 7 0.01
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (623 bp):
ATTTCCATGCCATATTTACACATGATAGAAATTTCATATTACCTAATTTAGTTATCGTTGTGGTT
GATAATAACAAGAAAAACTTAGGACAAATATTTTGATAAGCAGAAAGGAGACACGAAAAATTTTG
ATGTATACAGAAACAACATGATAAAGAAGGATATAAAAGTTGATGGCTTCTGAAAGGACATTGAT
GAATCAAAAGTTTTATTTGTTATATATGTGGGGAAAATTGAAAAAAAAAAAGAGGAGGATATGAT
ATATGTATATGTATATAAGTGGATTGATTAGAAAGAATATAAATGGATTGGAATTACCTTGGTAG
GAAATAGTTGTAGCATTGATGCTAGTAACATGAGAGAGGTTGTGTCATGATCTACCACCAAAATT
GAAAACTCTCACCACAATTGTTTCTTCTCAGATGAAATTGGGTATGGGATTGATAGTTATGAGAT
AAAAAGAGAGAGAGGCTTTATGATATATTATTAGACCCAAAAAAATTTAACCCCAAACTATTAAC
AAATGCCTTAAACAAACCACATCACCACCTTAACACCATGTTTGGTTCATCTGAATAACTAAGCC
ATTCCGGCTGTATACATCTAATTAATACCAGTAGATTT
Found at i:8058560 original size:5 final size:5
Alignment explanation
Indices: 8058550--8058575 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8058540 AAAAAATAGG
8058550 GGAAA GGAAA GGAAA GGAAA GGAAA G
1 GGAAA GGAAA GGAAA GGAAA GGAAA G
8058576 CGATGGATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (5 bp):
GGAAA
Found at i:8059295 original size:88 final size:90
Alignment explanation
Indices: 8059074--8059329 Score: 408
Period size: 88 Copynumber: 2.8 Consensus size: 90
8059064 AAGAATATAA
* * * *
8059074 AAGTTGATTGCTTCTGAAAGGACATTGATGAATCAAAAGTTTTATTTCTTATATATGTGGGGGGA
1 AAGTTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
8059139 AATTGAAAAAAAAAAAAAGAAGAAGAG
66 AATTG--AAAAAAAAAAAGAAGAAGAG
*
8059166 AAGTTGATGGTTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
1 AAGTTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
8059231 AATTGAAAAAAAAAAAG-A-AAGAG
66 AATTGAAAAAAAAAAAGAAGAAGAG
** *
8059254 AAGTTGATGGCTTCTTAATCGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGAAA
1 AAGTTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
8059319 AATTGAAAAAA
66 AATTGAAAAAA
8059330 GAGAAATGAT
Statistics
Matches: 155, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
88 77 0.50
89 1 0.01
90 12 0.08
92 65 0.42
ACGTcount: A:0.43, C:0.06, G:0.20, T:0.31
Consensus pattern (90 bp):
AAGTTGATGGCTTCTTAAAGGACATTGATGAATCAAAAATTTTATTTCTTATATATGTGGGGGAA
AATTGAAAAAAAAAAAGAAGAAGAG
Found at i:8060953 original size:39 final size:40
Alignment explanation
Indices: 8060895--8060978 Score: 143
Period size: 39 Copynumber: 2.1 Consensus size: 40
8060885 AAAATTTTAT
*
8060895 AAAATTAAAAAAATTATTTTAAAAATATTTTAAAATTAAA
1 AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
*
8060935 AAAATT-AAAAAAGTATTTTAAAAGTATTTTAAAATTAAA
1 AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
8060974 AAAAT
1 AAAAT
8060979 ATTTTAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
39 36 0.86
40 6 0.14
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (40 bp):
AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
Found at i:8060957 original size:11 final size:11
Alignment explanation
Indices: 8060943--8060968 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8060933 AAAAAATTAA
8060943 AAAAGTATTTT
1 AAAAGTATTTT
8060954 AAAAGTATTTT
1 AAAAGTATTTT
8060965 AAAA
1 AAAA
8060969 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:8060971 original size:30 final size:30
Alignment explanation
Indices: 8060935--8061035 Score: 123
Period size: 30 Copynumber: 3.4 Consensus size: 30
8060925 TAAAATTAAA
*
8060935 AAAATTAAAAAAGTATTTTAAAAGTATTTT
1 AAAATTAAAAAAGTATTTTAAAAATATTTT
* * ***
8060965 AAAATTAAAAAAATATTTTAAAATTA-AAA
1 AAAATTAAAAAAGTATTTTAAAAATATTTT
* *
8060994 AAAATTAAAAAAGTATGTAAAAAATATTTT
1 AAAATTAAAAAAGTATTTTAAAAATATTTT
8061024 AAAATTAAAAAA
1 AAAATTAAAAAA
8061036 AATATTTATT
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
29 22 0.38
30 36 0.62
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (30 bp):
AAAATTAAAAAAGTATTTTAAAAATATTTT
Found at i:8060980 original size:58 final size:60
Alignment explanation
Indices: 8060915--8061042 Score: 215
Period size: 59 Copynumber: 2.2 Consensus size: 60
8060905 AAATTATTTT
* * *
8060915 AAAAATATTTTAAAATT-AAAAAAATTAAAAAAGTATTTTAAAAGTATTTTAAAATT-AA
1 AAAAATATTTTAAAATTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTTAAAATTAAA
8060973 AAAAATATTTTAAAATTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTTAAAATTAAA
1 AAAAATATTTTAAAATTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTTAAAATTAAA
8061033 AAAAATATTT
1 AAAAATATTT
8061043 ATTATATCGG
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
58 17 0.26
59 36 0.55
60 12 0.18
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (60 bp):
AAAAATATTTTAAAATTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTTAAAATTAAA
Found at i:8061043 original size:19 final size:20
Alignment explanation
Indices: 8060954--8061042 Score: 94
Period size: 19 Copynumber: 4.5 Consensus size: 20
8060944 AAAGTATTTT
*
8060954 AAAAGTATTTTAAAATT-AA
1 AAAAATATTTTAAAATTAAA
8060973 AAAAATATTTTAAAATT-AA
1 AAAAATATTTTAAAATTAAA
** **
8060992 AAAAA-ATTAAAAAAGTATGTA
1 AAAAATATTTTAAAA-T-TAAA
8061013 AAAAATATTTTAAAATTAAA
1 AAAAATATTTTAAAATTAAA
8061033 AAAAATATTT
1 AAAAATATTT
8061043 ATTATATCGG
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
18 7 0.12
19 24 0.41
20 13 0.22
21 7 0.12
22 7 0.12
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAAATATTTTAAAATTAAA
Found at i:8063742 original size:21 final size:22
Alignment explanation
Indices: 8063681--8063746 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
8063671 CACGACCGTA
* *
8063681 TGCCTCCTTTCACACGGGCATG
1 TGCCTCCTTTCACATGGGCGTG
*
8063703 TGCCTCCTTTCGCATGGGCGTG
1 TGCCTCCTTTCACATGGGCGTG
*
8063725 TGCCTCC-TTCATATGGGCGTG
1 TGCCTCCTTTCACATGGGCGTG
8063746 T
1 T
8063747 TGACCCCACA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
21 13 0.33
22 26 0.67
ACGTcount: A:0.09, C:0.32, G:0.27, T:0.32
Consensus pattern (22 bp):
TGCCTCCTTTCACATGGGCGTG
Found at i:8086618 original size:7 final size:7
Alignment explanation
Indices: 8086601--8086637 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
8086591 CTTAAAACAA
8086601 ATTTA-C
1 ATTTACC
8086607 ATTTACC
1 ATTTACC
8086614 ATTTACC
1 ATTTACC
8086621 ATTTACC
1 ATTTACC
8086628 ATTTACC
1 ATTTACC
8086635 ATT
1 ATT
8086638 GGTGTCATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.46
Consensus pattern (7 bp):
ATTTACC
Found at i:8086875 original size:64 final size:64
Alignment explanation
Indices: 8086773--8086906 Score: 250
Period size: 64 Copynumber: 2.1 Consensus size: 64
8086763 GGTAAATAAG
8086773 TTCATTTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTAC
1 TTCA-TTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTAC
8086838 TTCATTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTAC
1 TTCATTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTAC
*
8086902 CTCAT
1 TTCAT
8086907 CCATATCAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
64 64 0.94
65 4 0.06
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.51
Consensus pattern (64 bp):
TTCATTTTTTTATTTCTCTTTAGTGTAAATTATTTCATTGAAGTCTAAGTGATGTTGCAATTAC
Found at i:8087469 original size:48 final size:48
Alignment explanation
Indices: 8087417--8087513 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
8087407 CTCCCCTGGT
8087417 AGAAAATTTTTCATATAAGAAATTGAAAGCTTGTTACTCAAATGTTAA
1 AGAAAATTTTTCATATAAGAAATTGAAAGCTTGTTACTCAAATGTTAA
*
8087465 AGAAAATTTTTCATATAATAAATTGAAAGCTTGTTACTCAAATGTTAA
1 AGAAAATTTTTCATATAAGAAATTGAAAGCTTGTTACTCAAATGTTAA
8087513 A
1 A
8087514 ATTGAATAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (48 bp):
AGAAAATTTTTCATATAAGAAATTGAAAGCTTGTTACTCAAATGTTAA
Found at i:8087513 original size:27 final size:27
Alignment explanation
Indices: 8087436--8087519 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 27
8087426 TTCATATAAG
8087436 AAATTGAAAGCTTGTTACTCAAATGTT
1 AAATTGAAAGCTTGTTACTCAAATGTT
* * **
8087463 AAA--GAAA-ATT-TT--TCATATAAT
1 AAATTGAAAGCTTGTTACTCAAATGTT
8087484 AAATTGAAAGCTTGTTACTCAAATGTT
1 AAATTGAAAGCTTGTTACTCAAATGTT
8087511 AAAATTGAA
1 -AAATTGAA
8087520 TAAAAGTGTT
Statistics
Matches: 42, Mismatches: 8, Indels: 13
0.67 0.13 0.21
Matches are distributed among these distances:
21 9 0.21
23 6 0.14
24 4 0.10
25 6 0.14
27 9 0.21
28 8 0.19
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (27 bp):
AAATTGAAAGCTTGTTACTCAAATGTT
Found at i:8088053 original size:6 final size:6
Alignment explanation
Indices: 8088037--8088082 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
8088027 AAAAATGAGG
*
8088037 ATATGT GTATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATAT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATAT
8088083 AAGTAGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATATGT
Found at i:8091267 original size:16 final size:16
Alignment explanation
Indices: 8091246--8091279 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8091236 AATGGAGTTA
8091246 CAATTGAGATTGAATC
1 CAATTGAGATTGAATC
8091262 CAATTGAGATTGAATC
1 CAATTGAGATTGAATC
8091278 CA
1 CA
8091280 GACTCTCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (16 bp):
CAATTGAGATTGAATC
Found at i:8091753 original size:18 final size:18
Alignment explanation
Indices: 8091732--8091767 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8091722 ACCAACATGT
* *
8091732 AAATAATTATTAAAATAA
1 AAATAATAATAAAAATAA
8091750 AAATAATAATAAAAATAA
1 AAATAATAATAAAAATAA
8091768 CATTCAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATAATAATAAAAATAA
Found at i:8093858 original size:30 final size:30
Alignment explanation
Indices: 8093823--8093883 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
8093813 CAGATTTTAG
8093823 GAGCCACACGGGCTAGACACACACCCATGT
1 GAGCCACACGGGCTAGACACACACCCATGT
* *
8093853 GAGCCACACGGGCTAGACACACGCCTATGT
1 GAGCCACACGGGCTAGACACACACCCATGT
8093883 G
1 G
8093884 CCAGCCCGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.34, G:0.26, T:0.11
Consensus pattern (30 bp):
GAGCCACACGGGCTAGACACACACCCATGT
Found at i:8102163 original size:28 final size:28
Alignment explanation
Indices: 8102114--8102170 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
8102104 AAAACATAGA
* *
8102114 GGTAGAAAGGAATAGTTTCAATTGATAT
1 GGTAGAAAGGAATAGTTCCAATTCATAT
8102142 GGTAGAAAGGAATAAG-TCCAATTCATAT
1 GGTAGAAAGGAAT-AGTTCCAATTCATAT
8102170 G
1 G
8102171 AAAATTTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (28 bp):
GGTAGAAAGGAATAGTTCCAATTCATAT
Found at i:8122503 original size:16 final size:16
Alignment explanation
Indices: 8122457--8122503 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
8122447 ATTAAGAACG
8122457 AAGAAAAAGTAGGAAGAA
1 AAGAAAAAG-AGG-AGAA
8122475 AAGAAAGAA-AGGAGAA
1 AAGAAA-AAGAGGAGAA
*
8122491 TAGAAAAAGAGGA
1 AAGAAAAAGAGGA
8122504 AATGAGAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 2 0.08
16 13 0.50
17 3 0.12
18 6 0.23
19 2 0.08
ACGTcount: A:0.66, C:0.00, G:0.30, T:0.04
Consensus pattern (16 bp):
AAGAAAAAGAGGAGAA
Found at i:8127057 original size:61 final size:62
Alignment explanation
Indices: 8126970--8127128 Score: 180
Period size: 61 Copynumber: 2.6 Consensus size: 62
8126960 TCTGACCTAC
* * * * * *
8126970 GTGGTCTTTAATAGTAATAGTAAGTCACACGGCCTGGACACA-AGCAT-GTGTCTCTGGC-AGT
1 GTGGTCTCTAATAGCAACAGTGAGTCACACGGCCTAGACACACA-C-TCGTGTCTCTAGCTAGT
* * *
8127031 GTGGTCTCTAATAGCAACAGTGAGTCATATGGCCTAGACACACACTCGTGTCTCTAGCTCGT
1 GTGGTCTCTAATAGCAACAGTGAGTCACACGGCCTAGACACACACTCGTGTCTCTAGCTAGT
* *
8127093 GTGGTCTCTAATAGCAACAGTGAGTTACACGACCTA
1 GTGGTCTCTAATAGCAACAGTGAGTCACACGGCCTA
8127129 CCACACGGCC
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
60 1 0.01
61 46 0.56
62 35 0.43
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (62 bp):
GTGGTCTCTAATAGCAACAGTGAGTCACACGGCCTAGACACACACTCGTGTCTCTAGCTAGT
Found at i:8128369 original size:25 final size:27
Alignment explanation
Indices: 8128310--8128372 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 27
8128300 AGAAAATGGA
*
8128310 GTGAACAAAATCAAAATCATGGAAAAT
1 GTGAACAAAATCAAAACCATGGAAAAT
8128337 GTGAACAAAAT-AAAACCAT-G-AAAT
1 GTGAACAAAATCAAAACCATGGAAAAT
*
8128361 CGTGGACAAAAT
1 -GTGAACAAAAT
8128373 TATGTGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 4 0.12
25 11 0.33
26 7 0.21
27 11 0.33
ACGTcount: A:0.54, C:0.13, G:0.16, T:0.17
Consensus pattern (27 bp):
GTGAACAAAATCAAAACCATGGAAAAT
Found at i:8129087 original size:6 final size:6
Alignment explanation
Indices: 8129073--8129105 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
8129063 TTACGTTAAT
*
8129073 TATATA TATAAA TATAAA TATAAA TATAAA TAT
1 TATAAA TATAAA TATAAA TATAAA TATAAA TAT
8129106 TTATTTACGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (6 bp):
TATAAA
Found at i:8134672 original size:23 final size:23
Alignment explanation
Indices: 8134650--8134704 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
8134640 CTATTTAATA
*
8134650 ATAAATATTTTAA-AGTATAAAT
1 ATAAATATTTTAACAATATAAAT
*
8134672 ATGAATATTTTAACAATATAAAT
1 ATAAATATTTTAACAATATAAAT
*
8134695 ATAAGTATTT
1 ATAAATATTT
8134705 GTGTAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 12 0.43
23 16 0.57
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (23 bp):
ATAAATATTTTAACAATATAAAT
Found at i:8135031 original size:20 final size:18
Alignment explanation
Indices: 8134993--8135045 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
8134983 CATCCAAACA
* *
8134993 CCAAAAAGAATTAACTTTT
1 CCAAAAATAATTTA-TTTT
*
8135012 CCGGAAAATCAATTTATTTT
1 CC-AAAAAT-AATTTATTTT
8135032 CCAAAAATAATTTA
1 CCAAAAATAATTTA
8135046 CCGAAAACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 6 0.21
19 7 0.25
20 10 0.36
21 5 0.18
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.34
Consensus pattern (18 bp):
CCAAAAATAATTTATTTT
Found at i:8135572 original size:27 final size:26
Alignment explanation
Indices: 8135532--8135587 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 26
8135522 AAGAAAGAAA
*
8135532 AAGAAAAAGAGAAGAGACAAGATTTT
1 AAGAAAAAGAGAAGAGACAAGATTAT
8135558 AAGAAAAATGAGAAGAGACAAGATTAT
1 AAGAAAAA-GAGAAGAGACAAGATTAT
8135585 AAG
1 AAG
8135588 TGCATAGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.59, C:0.04, G:0.23, T:0.14
Consensus pattern (26 bp):
AAGAAAAAGAGAAGAGACAAGATTAT
Found at i:8143966 original size:5 final size:5
Alignment explanation
Indices: 8143956--8143980 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8143946 GGCAGGGGGA
8143956 AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG
8143981 CAGGAAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:8148304 original size:33 final size:33
Alignment explanation
Indices: 8148254--8148328 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 33
8148244 AAACTAATCC
* *
8148254 TCTCTCAAATTTCCTCTC-AATTTCTTCTAAATT
1 TCTCTC-AATTTCCTCTCAAATTCCTTCCAAATT
*
8148287 TCCTCTCAATTTGCTCTCAAATTCCTTCCAAATT
1 T-CTCTCAATTTCCTCTCAAATTCCTTCCAAATT
8148321 TCTCTCAA
1 TCTCTCAA
8148329 ATTCATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 18 0.49
34 19 0.51
ACGTcount: A:0.24, C:0.31, G:0.01, T:0.44
Consensus pattern (33 bp):
TCTCTCAATTTCCTCTCAAATTCCTTCCAAATT
Found at i:8148329 original size:11 final size:11
Alignment explanation
Indices: 8148254--8148331 Score: 74
Period size: 11 Copynumber: 7.0 Consensus size: 11
8148244 AAACTAATCC
8148254 TCTCTCAAATT
1 TCTCTCAAATT
8148265 TCCTCTC-AATT
1 T-CTCTCAAATT
8148276 TCT-TCTAAATT
1 TCTCTC-AAATT
8148287 TCCTCTC-AATT
1 T-CTCTCAAATT
8148298 TGCTCTCAAATT
1 T-CTCTCAAATT
*
8148310 CCT-TCCAAATT
1 TCTCT-CAAATT
8148321 TCTCTCAAATT
1 TCTCTCAAATT
8148332 CATATTTAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
9 2 0.04
10 3 0.05
11 37 0.66
12 12 0.21
13 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.01, T:0.45
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:8148332 original size:22 final size:22
Alignment explanation
Indices: 8148254--8148331 Score: 99
Period size: 22 Copynumber: 3.5 Consensus size: 22
8148244 AAACTAATCC
8148254 TCTCTCAAATTTCCTCTCAATT
1 TCTCTCAAATTTCCTCTCAATT
8148276 TCT-TCTAAATTTCCTCTCAATT
1 TCTCTC-AAATTTCCTCTCAATT
8148298 TGCTCTCAAA-TTCCT-TCCAAATT
1 T-CTCTCAAATTTCCTCT-C-AATT
8148321 TCTCTCAAATT
1 TCTCTCAAATT
8148332 CATATTTAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
21 3 0.06
22 34 0.68
23 11 0.22
24 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.01, T:0.45
Consensus pattern (22 bp):
TCTCTCAAATTTCCTCTCAATT
Found at i:8150220 original size:18 final size:18
Alignment explanation
Indices: 8150193--8150232 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8150183 CAGGTGCGTT
* *
8150193 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
8150211 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
8150229 TCCT
1 TCCT
8150233 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:8150731 original size:23 final size:22
Alignment explanation
Indices: 8150703--8151682 Score: 879
Period size: 23 Copynumber: 43.8 Consensus size: 22
8150693 GTTATTACTT
*
8150703 AAAACCCTAAACTCTTAAAATTA
1 AAAACCCTAAACCCTT-AAATTA
*
8150726 AAAACCCTAAACCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
** *
8150748 AAAACCCTAAACTAATTTAATTA
1 AAAACCCTAAAC-CCTTAAATTA
* *
8150771 AAAACACTAAACCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
*
8150793 AAAA-CCTTAACCCTTAAATTA
1 AAAACCCTAAACCCTTAAATTA
*
8150814 AAAACACTAAACCCTTAAAATTA
1 AAAACCCTAAACCCTT-AAATTA
*
8150837 AAAACCCTAAACCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
*
8150859 AAAA-CCTAAACCCTTAAAAATA
1 AAAACCCTAAACCCTT-AAATTA
8150881 AAAACCCTAAACCC-TAACCCTTAGCTTA
1 AAAACCCTAAACCCTTAA-----A--TTA
** *
8150909 AAAACCCTAAACTAATTTAATTA
1 AAAACCCTAAAC-CCTTAAATTA
*** *
8150932 AAAATTTTAAACCCTTAAACATA
1 AAAACCCTAAACCCTTAAA-TTA
* ** *
8150955 AAAAACCTAAACTGATTTAATTA
1 AAAACCCTAAAC-CCTTAAATTA
* *
8150978 AAAACCCTAAACCATTAACTTA
1 AAAACCCTAAACCCTTAAATTA
**
8151000 AAAACCCTAAACTAATT-AATTA
1 AAAACCCTAAAC-CCTTAAATTA
* *
8151022 AAAACCCTAAACCATTAACTTA
1 AAAACCCTAAACCCTTAAATTA
** *
8151044 AAAACCCTAAACTAATTTAATTA
1 AAAACCCTAAAC-CCTTAAATTA
8151067 AAAACCCTAAACCC-TAAACTTA
1 AAAACCCTAAACCCTTAAA-TTA
8151089 AAAACCCT-AACCCTTAAATTA
1 AAAACCCTAAACCCTTAAATTA
* *
8151110 AAAATCCTAAA-CCTTAAAATTT
1 AAAACCCTAAACCCTT-AAATTA
* *
8151132 AAAACCCTAAACCATTAACTTA
1 AAAACCCTAAACCCTTAAATTA
* *
8151154 AAAATCCT-AACTCTTAAATTA
1 AAAACCCTAAACCCTTAAATTA
8151175 AAAACCCTAAACCCTTAAAATTA
1 AAAACCCTAAACCCTT-AAATTA
* * ** *
8151198 AAAGCCATAGGCCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
** *
8151220 AAAACCCTAAACTAATTTAATTA
1 AAAACCCTAAAC-CCTTAAATTA
*
8151243 AAAACCTTAAACCCTTAAAATTA
1 AAAACCCTAAACCCTT-AAATTA
* *
8151266 AAAACCCTAACCCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
* ** * *
8151288 AAAACTCTAAACTAATTTAGTTA
1 AAAACCCTAAAC-CCTTAAATTA
*
8151311 AAAACCCTAAACCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
*
8151333 AAAA-CCTTAACCCTTAAATTA
1 AAAACCCTAAACCCTTAAATTA
*
8151354 AAACCCCTAAACCCTTAAAATTA
1 AAAACCCTAAACCCTT-AAATTA
* *
8151377 AAAACCATAAACCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
*
8151399 AAAACCCT-AATCCTTAAATTA
1 AAAACCCTAAACCCTTAAATTA
8151420 AAAACCCTAAACCCTTAAAGTTA
1 AAAACCCTAAACCCTTAAA-TTA
* *
8151443 AAAACCCTAAGCCCTTAACTT-
1 AAAACCCTAAACCCTTAAATTA
** *
8151464 AAAACCCTAAACTAATTTAATTA
1 AAAACCCTAAAC-CCTTAAATTA
8151487 AAAACCCTAAACCCTTAAACTTA
1 AAAACCCTAAACCCTTAAA-TTA
* *
8151510 AAAACCCTAACCCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
** *
8151532 AAAACCCTAAACTAATTTAATTA
1 AAAACCCTAAAC-CCTTAAATTA
8151555 AAAACCCTAAACCCTTAAATTTA
1 AAAACCCTAAACCCTTAAA-TTA
** * *
8151578 AAAACCCTAAACTAATTTACTTA
1 AAAACCCTAAAC-CCTTAAATTA
*
8151601 AAAACCCTAAACCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
* *
8151623 AAAACCCT-AACCC-TCAACTA
1 AAAACCCTAAACCCTTAAATTA
* * *
8151643 AAAAACCTTAACCCTTAACTTA
1 AAAACCCTAAACCCTTAAATTA
* *
8151665 AAACCCCTTAACCCTTAA
1 AAAACCCTAAACCCTTAA
8151683 CTTTAAAATT
Statistics
Matches: 774, Mismatches: 142, Indels: 83
0.77 0.14 0.08
Matches are distributed among these distances:
20 11 0.01
21 131 0.17
22 293 0.38
23 314 0.41
24 7 0.01
25 1 0.00
26 1 0.00
28 14 0.02
30 2 0.00
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.25
Consensus pattern (22 bp):
AAAACCCTAAACCCTTAAATTA
Found at i:8150752 original size:45 final size:44
Alignment explanation
Indices: 8150699--8151730 Score: 875
Period size: 45 Copynumber: 23.2 Consensus size: 44
8150689 TTGAGTTATT
*
8150699 ACTT-AAAACCCTAAACTCTTAAAATTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAACCCTT-AAATTAAAAACCCTAAACCCTTA
** * *
8150743 ACTTAAAAACCCTAAACTAATTTAATTAAAAACACTAAACCCTTA
1 ACTTAAAAACCCTAAAC-CCTTAAATTAAAAACCCTAAACCCTTA
* *
8150788 ACTTAAAAA-CCTTAACCCTTAAATTAAAAACACTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTT-A
* *
8150832 AATTAAAAACCCTAAACCCTTAACTTAAAAA-CCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTT-A
** **
8150876 AAATAAAAACCCTAAACCC-TAACCCTTAGCTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAACCCTTAA-----A--TTAAAAACCCTAAAC--CCTTA
*** * * **
8150928 A-TTAAAAATTTTAAACCCTTAAACATAAAAAACCTAAACTGATTTA
1 ACTTAAAAACCCTAAACCCTTAAA-TTAAAAACCCTAAAC--CCTTA
* * **
8150974 A-TTAAAAACCCTAAACCATTAACTTAAAAACCCTAAACTAATTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAAC-CCTTA
* * **
8151018 A-TTAAAAACCCTAAACCATTAACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAAC--CCTTA
8151063 A-TTAAAAACCCTAAACCC-TAAACTTAAAAACCCT-AACCCTTA
1 ACTTAAAAACCCTAAACCCTTAAA-TTAAAAACCCTAAACCCTTA
* * * *
8151105 AATTAAAAATCCTAAA-CCTTAAAATTTAAAACCCTAAACCATTA
1 ACTTAAAAACCCTAAACCCTT-AAATTAAAAACCCTAAACCCTTA
* *
8151149 ACTTAAAAATCCT-AACTCTTAAATTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTT-A
* * * ** * **
8151193 AATTAAAAGCCATAGGCCCTTAACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAAC--CCTTA
* *
8151239 A-TTAAAAACCTTAAACCCTTAAAATTAAAAACCCTAACCCCTTA
1 ACTTAAAAACCCTAAACCCTT-AAATTAAAAACCCTAAACCCTTA
* ** * *
8151283 ACTTAAAAACTCTAAACTAATTTAGTTAAAAACCCTAAACCCTTA
1 ACTTAAAAACCCTAAAC-CCTTAAATTAAAAACCCTAAACCCTTA
* *
8151328 ACTTAAAAA-CCTTAACCCTTAAATTAAAACCCCTAAACCCTTAA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTT-A
* * * *
8151372 AATTAAAAACCATAAACCCTTAACTTAAAAACCCT-AATCCTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTA
* *
8151415 AATTAAAAACCCTAAACCCTTAAAGTTAAAAACCCTAAGCCCTTA
1 ACTTAAAAACCCTAAACCCTTAAA-TTAAAAACCCTAAACCCTTA
** *
8151460 ACTT-AAAACCCTAAACTAATTTAATTAAAAACCCTAAACCCTTAA
1 ACTTAAAAACCCTAAAC-CCTTAAATTAAAAACCCTAAACCCTT-A
* * **
8151505 ACTTAAAAACCCTAACCCCTTAACTTAAAAACCCTAAACTAATTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAAC--CCTTA
** *
8151551 A-TTAAAAACCCTAAACCCTTAAATTTAAAAACCCTAAACTAATTT
1 ACTTAAAAACCCTAAACCCTTAAA-TTAAAAACCCTAAAC-CCTTA
* *
8151596 ACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT-AACCCTCA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTA
* * * * *
8151639 AC-TAAAAAACCTTAACCCTTAACTTAAAACCCCTTAACCCTTA
1 ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTA
* *** * *
8151682 ACTTTAAAATTTTAAA--CTAAAACTTAAAAACCAT-AACCCTTA
1 ACTTAAAAACCCTAAACCCTTAAA-TTAAAAACCCTAAACCCTTA
8151724 ACTTAAA
1 ACTTAAA
8151731 TTTATTTGAT
Statistics
Matches: 822, Mismatches: 123, Indels: 88
0.80 0.12 0.09
Matches are distributed among these distances:
42 53 0.06
43 137 0.17
44 208 0.25
45 276 0.34
46 109 0.13
47 5 0.01
50 7 0.01
51 20 0.02
52 5 0.01
53 2 0.00
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.26
Consensus pattern (44 bp):
ACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTA
Found at i:8150869 original size:28 final size:29
Alignment explanation
Indices: 8150838--8150920 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 29
8150828 TTAAAATTAA
8150838 AAACCCTAAACCCTTAACTTAAAAA-CCT
1 AAACCCTAAACCCTTAACTTAAAAACCCT
8150866 AAACCCTTAAA-----AA--TAAAAACCCT
1 AAACCC-TAAACCCTTAACTTAAAAACCCT
*
8150889 AAACCCT-AACCCTTAGCTTAAAAACCCT
1 AAACCCTAAACCCTTAACTTAAAAACCCT
8150917 AAAC
1 AAAC
8150921 TAATTTAATT
Statistics
Matches: 45, Mismatches: 1, Indels: 18
0.70 0.02 0.28
Matches are distributed among these distances:
21 2 0.04
22 7 0.16
23 9 0.20
24 2 0.04
26 1 0.02
28 20 0.44
29 4 0.09
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.19
Consensus pattern (29 bp):
AAACCCTAAACCCTTAACTTAAAAACCCT
Found at i:8151300 original size:244 final size:247
Alignment explanation
Indices: 8150724--8151730 Score: 445
Period size: 244 Copynumber: 4.1 Consensus size: 247
8150714 CTCTTAAAAT
* *
8150724 TAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACTAATTTAATTAAAAACACTAAACCCTT-A
1 TAAAAA-CCTAAGCCCTTAACTTAAAAACCCTAAACTAATTTAATTAAAAACCCTAAACCCTTAA
* * * * ** *
8150788 ACTTAAAAA-CCTTAACCCTTAAATTAAAAACACTAAAC-CCTTAAAATTAAAAACCCTAAACCC
65 AATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACTAATT-TAATTAAAAACCCTAAACCC
* *
8150851 TT-AACTTAAAAA-CCTAAACCCTTAAAAATAAAAACCCTAAACCC-TAACCCTTAGCTTAAAAA
129 TTAAACTTAAAAACCCTAAACCCTT-AAATTAAAAACCCTAAACCCTTAA-----A-ATTAAAAA
* *** * * * ** *
8150913 CCCTAAACTAATTTAA-TTAAAAATTTTAAAC-CCTTAAACATAAAAAACCTAAACTGATT-TAA
187 CCCTAAAC-CA-TTAACTTAAAAACCCT-AACTACTTAAA-TTAAAAACCCTAAAC-CCTTAAAA
8150975 T
247 T
* * *
8150976 TAAAAACCCTAAACCATTAACTTAAAAACCCTAAACTAA-TTAATTAAAAACCCTAAACCATT-A
1 TAAAAA-CCTAAGCCCTTAACTTAAAAACCCTAAACTAATTTAATTAAAAACCCTAAACCCTTAA
* ** *
8151039 ACTTAAAAACCCTAAACTAATTTAA-TTAAAAACCCTAAACCCTAA---ACTTAAAAACCCT-AA
65 AATTAAAAACCCTAAAC--CCTTAACTTAAAAACCCTAAA--CTAATTTAATTAAAAACCCTAAA
* * * * *
8151099 CCCTTAAA-TTAAAAATCCTAAA-CCTTAAAATTTAAAACCCTAAACCATT-AACTTAAAAATCC
126 CCCTTAAACTTAAAAACCCTAAACCCTT-AAATTAAAAACCCTAAACCCTTAAAATTAAAAACCC
* * * * ** *
8151161 T-AACTC-TTAAATTAAAAACCCTAAAC-CCTTAAAATTAAAAGCCATAGGCCCTT-AACT
190 TAAAC-CATTAACTTAAAAACCCT-AACTACTT-AAATTAAAAACCCTAAACCCTTAAAAT
* ** * ** * *
8151218 TAAAAACCCTAAACTAATTTAA-TTAAAAACCTTAAAC-CCTTAAAATTAAAAACCCTAACCCCT
1 TAAAAA-CCTAAGC--CCTTAACTTAAAAACCCTAAACTAATT-TAATTAAAAACCCTAAACCCT
* * ** * * ** *
8151281 T-AACTTAAAAACTCTAAACTAATTTAGTTAAAAACCCTAAAC--CCTTAACTTAAAAA-CCTTA
62 TAAAATTAAAAACCCTAAAC-CCTTAACTTAAAAACCCTAAACTAATTTAA-TTAAAAACCCTAA
* * *
8151342 ACCCTTAAA-TTAAAACCCCTAAACCCTTAAAATTAAAAACCATAAACCCTT-AACTTAAAAACC
125 ACCCTTAAACTTAAAAACCCTAAACCCTT-AAATTAAAAACCCTAAACCCTTAAAATTAAAAACC
* * * * *
8151405 CTAATCC-TTAAATTAAAAACCCTAAAC-CCTTAAAGTTAAAAACCCTAAGCCCTT-AACT
189 CTAAACCATTAACTTAAAAACCCT-AACTACTTAAA-TTAAAAACCCTAAACCCTTAAAAT
* * ** ** * *
8151463 TAAAACCCTAAACTAATTTAA-TTAAAAACCCTAAAC-CCTTAAACTTAAAAACCCTAACCCCTT
1 TAAAAACCTAAGC--CCTTAACTTAAAAACCCTAAACTAATTTAA-TTAAAAACCCTAAACCCTT
* ** ** *
8151526 -AACTTAAAAACCCTAAACTAATTTAA-TTAAAAACCCTAAAC-CCTTAAATTTAAAAACCCTAA
63 AAAATTAAAAACCCTAAAC--CCTTAACTTAAAAACCCTAAACTAATTTAA-TTAAAAACCCTAA
** * * * * *
8151588 ACTAATT-TACTTAAAAACCCTAAACCCTTAACTTAAAAACCCT-AACCC-T-CAACTAAAAAAC
125 AC-CCTTAAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTAAAATTAAAAACC
* * * * * * ***
8151649 CTTAACCCTTAACTTAAAACCCCTTAAC-CCTTAACTTTAAAATTTTAAA--C-TAAAACT
189 CTAAACCATTAACTTAAAAACCC-TAACTACTTAAATTAAAAACCCTAAACCCTTAAAA-T
8151706 TAAAAACCATAA-CCCTTAACTTAAA
1 TAAAAACC-TAAGCCCTTAACTTAAA
8151731 TTTATTTGAT
Statistics
Matches: 633, Mismatches: 86, Indels: 82
0.79 0.11 0.10
Matches are distributed among these distances:
241 5 0.01
242 31 0.05
243 60 0.09
244 203 0.32
245 140 0.22
246 23 0.04
247 20 0.03
251 68 0.11
252 65 0.10
253 13 0.02
254 4 0.01
255 1 0.00
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.26
Consensus pattern (247 bp):
TAAAAACCTAAGCCCTTAACTTAAAAACCCTAAACTAATTTAATTAAAAACCCTAAACCCTTAAA
ATTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACTAATTTAATTAAAAACCCTAAACCCTT
AAACTTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAACCCTTAAAATTAAAAACCCTAAACC
ATTAACTTAAAAACCCTAACTACTTAAATTAAAAACCCTAAACCCTTAAAAT
Found at i:8154380 original size:21 final size:21
Alignment explanation
Indices: 8154331--8154380 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
8154321 CCCTTATTTG
8154331 TTATT-TTAGTTATTTTATCA
1 TTATTATTAGTTATTTTATCA
**
8154351 TTAAAATTAGTTATTTTAAT-A
1 TTATTATTAGTTATTTT-ATCA
8154372 TTATTATTA
1 TTATTATTA
8154381 CTATTATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 3 0.12
21 19 0.79
22 2 0.08
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAGTTATTTTATCA
Found at i:8154433 original size:16 final size:16
Alignment explanation
Indices: 8154414--8154444 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8154404 TATTGTTATC
*
8154414 TATTTATTTATATTTA
1 TATTTATTTAAATTTA
8154430 TATTTATTTAAATTT
1 TATTTATTTAAATTT
8154445 TCAGTACATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTATTTAAATTTA
Found at i:8156352 original size:51 final size:51
Alignment explanation
Indices: 8156308--8156405 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
8156298 AATTATTTAA
*
8156308 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTCAAGAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * * *
8156359 AAATATGGATTCGAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTCAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
8156406 GAGGAAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 40 0.98
52 1 0.02
ACGTcount: A:0.46, C:0.04, G:0.24, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTCAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:8156405 original size:11 final size:11
Alignment explanation
Indices: 8156381--8156436 Score: 69
Period size: 11 Copynumber: 5.2 Consensus size: 11
8156371 GAGAGAAATT
*
8156381 TTGA-AGGAAT
1 TTGAGAGGAAA
*
8156391 TTGAGAGCAAA
1 TTGAGAGGAAA
8156402 TTGAGAGGAAA
1 TTGAGAGGAAA
* *
8156413 TTTAGAAGAAA
1 TTGAGAGGAAA
8156424 TTGAGAGGAAA
1 TTGAGAGGAAA
8156435 TT
1 TT
8156437 TTAGATAAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
10 4 0.11
11 34 0.89
ACGTcount: A:0.45, C:0.02, G:0.29, T:0.25
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:8156408 original size:33 final size:33
Alignment explanation
Indices: 8156371--8156436 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
8156361 ATATGGATTC
* *
8156371 GAGA-GAAATTTTGAAGGAATTTGAGAGCAAATT
1 GAGAGGAAATTTAGAA-GAAATTGAGAGCAAATT
*
8156404 GAGAGGAAATTTAGAAGAAATTGAGAGGAAATT
1 GAGAGGAAATTTAGAAGAAATTGAGAGCAAATT
8156437 TTAGATAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 19 0.66
34 10 0.34
ACGTcount: A:0.45, C:0.02, G:0.29, T:0.24
Consensus pattern (33 bp):
GAGAGGAAATTTAGAAGAAATTGAGAGCAAATT
Found at i:8158057 original size:40 final size:40
Alignment explanation
Indices: 8157988--8158141 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
8157978 AAACAGGCTT
* * *
8157988 TTAGCGGCG-TTTGGACAAAAAATGCCGCTAAAAATCAAGCA
1 TTAGCGGCGCTTT-TAC-AAAAACGCCGCTAAAAATCGAGCA
* * *
8158029 TTAGCGGTGC-TTTACGTAAAACGCCGCTAAAGATCGAGCA
1 TTAGCGGCGCTTTTAC-AAAAACGCCGCTAAAAATCGAGCA
*
8158069 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAAAT-GAGCA
1 TTAGCGGCGCTTTTACAAAAACGCCGCTAAAAATCGAGCA
* * ** *
8158108 TTAGTGGCGATTTTTGGAAAAACGCCGCAAAAAA
1 TTAGCGGCG-CTTTTACAAAAACGCCGCTAAAAA
8158142 CCCTAAGCCC
Statistics
Matches: 94, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 13 0.14
40 67 0.71
41 14 0.15
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (40 bp):
TTAGCGGCGCTTTTACAAAAACGCCGCTAAAAATCGAGCA
Found at i:8158122 original size:39 final size:41
Alignment explanation
Indices: 8158005--8158141 Score: 145
Period size: 40 Copynumber: 3.4 Consensus size: 41
8157995 CGTTTGGACA
* * * * **
8158005 AAAAATGCCGCTAAAAATCAAGCATTAGCGGTGCTTTACG-
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGATTTTTGC
* * *
8158045 TAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTT-C
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGATTTTTGC
* *
8158085 AAAAACGCCGCTAAAAAT-GAGCATTAGTGGCGATTTTTGG
1 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGATTTTTGC
*
8158125 AAAAACGCCGCAAAAAA
1 AAAAACGCCGCTAAAAA
8158142 CCCTAAGCCC
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 18 0.22
40 64 0.78
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (41 bp):
AAAAACGCCGCTAAAAATCGAGCATTAGCGGCGATTTTTGC
Found at i:8158242 original size:41 final size:41
Alignment explanation
Indices: 8158179--8158493 Score: 452
Period size: 41 Copynumber: 7.7 Consensus size: 41
8158169 CCTTTCGAGG
**
8158179 CTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
8158220 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* * *
8158261 CTTTAGCGGCGTTTATGGAGAAGCGCCGCTAATGCTCAAAT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* * * *
8158302 CTTTAGCGGCATTTTTGGAGAAGCGCCACTAATGCTCAGTT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* *
8158343 CTTTAGCGGCGTTTTTGTAAAAGCGCCGCTAATGCTCAGTT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* *
8158384 CTTTAGCGGC-TTTTTGTAAAAGCGCCGCTAATGCTCAGTT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* * * *
8158424 CTTTAACGGCGTTTTTGTAACAGCGCCGCTAATACTCAGAT
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
* *
8158465 CTTTGGCGGCGTTTTTGAAAAAGCGCCGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGC
8158494 AAGAACATTT
Statistics
Matches: 251, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 39 0.16
41 212 0.84
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGAT
Found at i:8158662 original size:88 final size:89
Alignment explanation
Indices: 8158526--8158691 Score: 307
Period size: 88 Copynumber: 1.9 Consensus size: 89
8158516 TACTATTTAA
*
8158526 TTTATTTATATTAATTAAAATTCAATTTATTTTTAATTTAATATTTGTT-AAAATAGATAAATTT
1 TTTATTTATATTAATTAAAATTCAATTTATTTTTAATTGAATATTTGTTAAAAATAGATAAATTT
8158590 GAAATAATGACACTATTTAATTTG
66 GAAATAATGACACTATTTAATTTG
*
8158614 TTTATTTATATTAATTAAAATTCAATTTATTTTTAATTGAATATTTGTTAAAAATGGATAAATTT
1 TTTATTTATATTAATTAAAATTCAATTTATTTTTAATTGAATATTTGTTAAAAATAGATAAATTT
8158679 GAAATAATGACAC
66 GAAATAATGACAC
8158692 GTAGAAATAA
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
88 48 0.64
89 27 0.36
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.48
Consensus pattern (89 bp):
TTTATTTATATTAATTAAAATTCAATTTATTTTTAATTGAATATTTGTTAAAAATAGATAAATTT
GAAATAATGACACTATTTAATTTG
Found at i:8159011 original size:14 final size:15
Alignment explanation
Indices: 8158983--8159015 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
8158973 AAGGTTTATA
8158983 GATTATGGAATTAGG
1 GATTATGGAATTAGG
8158998 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
8159012 GATT
1 GATT
8159016 CTGATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:8160256 original size:19 final size:20
Alignment explanation
Indices: 8160234--8160276 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
8160224 ATTATAAGAA
*
8160234 AAAAATAAAATACAAAAA-T
1 AAAAATAAAATAAAAAAACT
*
8160253 AAAAATGAAATAAAAAAACT
1 AAAAATAAAATAAAAAAACT
8160273 AAAA
1 AAAA
8160277 TTTATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (20 bp):
AAAAATAAAATAAAAAAACT
Found at i:8165665 original size:43 final size:43
Alignment explanation
Indices: 8165567--8165668 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
8165557 TTTTTGTGAG
* *
8165567 AAGCGCCGCTAAAGGTATCGAGCTATAACAGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTATAGAGCTATAACAGCGTTTGTGGAAA
* * *
8165610 AAGTGCCACTAAAGGTATAGAGCTATAGC-GACGTTTGTGGAAA
1 AAGCGCCGCTAAAGGTATAGAGCTATAACAG-CGTTTGTGGAAA
*
8165653 AAGCGTCGCTAAAGGT
1 AAGCGCCGCTAAAGGT
8165669 CAATGTCTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
42 1 0.02
43 49 0.98
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTATAGAGCTATAACAGCGTTTGTGGAAA
Found at i:8166147 original size:19 final size:19
Alignment explanation
Indices: 8166119--8166155 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8166109 TTTTGGAGAA
8166119 TAAAAGTTT-GAGGGAAAG
1 TAAAAGTTTGGAGGGAAAG
8166137 TAAATAGTTTGGAGGGAAA
1 TAAA-AGTTTGGAGGGAAA
8166156 ATATTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.24
Consensus pattern (19 bp):
TAAAAGTTTGGAGGGAAAG
Found at i:8166498 original size:9 final size:9
Alignment explanation
Indices: 8166481--8166517 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
8166471 TATAGTTTGA
8166481 TATTCGAAT
1 TATTCGAAT
*
8166490 TATTTGAAT
1 TATTCGAAT
*
8166499 TATTCGAGT
1 TATTCGAAT
8166508 TATTCGAAT
1 TATTCGAAT
8166517 T
1 T
8166518 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:8166585 original size:9 final size:9
Alignment explanation
Indices: 8166568--8166598 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8166558 TCGAGTTGAT
8166568 TCGAATAAC
1 TCGAATAAC
*
8166577 TCGATTAAC
1 TCGAATAAC
8166586 TCGAATAAC
1 TCGAATAAC
8166595 TCGA
1 TCGA
8166599 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:8174395 original size:13 final size:13
Alignment explanation
Indices: 8174379--8174442 Score: 67
Period size: 13 Copynumber: 4.9 Consensus size: 13
8174369 TTTAAACCAA
8174379 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
8174392 ACTTCTCAAAATC
1 ACTTTTCAAAAGC
*
8174405 ACTTTTCCACAA-C
1 ACTTTT-CAAAAGC
*
8174418 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
8174431 ACTTCTCAAAAG
1 ACTTTTCAAAAG
8174443 TATTGCCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
12 4 0.10
13 34 0.81
14 4 0.10
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:8176285 original size:4 final size:4
Alignment explanation
Indices: 8176276--8176301 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8176266 ATACTAGTGT
8176276 TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TA
8176302 CCCATCCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:8180653 original size:21 final size:22
Alignment explanation
Indices: 8180619--8180664 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
8180609 GTGCTCTTAT
*
8180619 TTTTCTGCTGTTTTTGTTGTTA
1 TTTTCTGCTATTTTTGTTGTTA
*
8180641 TTTT-TGCTATTTTTTTTGTTA
1 TTTTCTGCTATTTTTGTTGTTA
8180662 TTT
1 TTT
8180665 ATACTGGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.07, C:0.07, G:0.13, T:0.74
Consensus pattern (22 bp):
TTTTCTGCTATTTTTGTTGTTA
Found at i:8182629 original size:12 final size:12
Alignment explanation
Indices: 8182612--8182637 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8182602 CAACACAGGC
8182612 TTTTAGCGGCGT
1 TTTTAGCGGCGT
8182624 TTTTAGCGGCGT
1 TTTTAGCGGCGT
8182636 TT
1 TT
8182638 ATTTTCCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:8182944 original size:72 final size:73
Alignment explanation
Indices: 8182818--8183208 Score: 428
Period size: 73 Copynumber: 5.4 Consensus size: 73
8182808 AGATCAGGGC
* * * *
8182818 TTTAGCGGCGTTTTTGAGAAAGCGCCACATACAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCT
8182883 TTTGGGGA
66 TTTGGGGA
* *
8182891 TTTAGCGGCG-TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAATGATGCCGTTTTTTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCT
* *
8182955 TTCGTGGA
66 TTTGGGGA
* * * * * ** * * *
8182963 TATAGTGGTGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAACCCAATTACGTCGTTTTCTGATCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCT
8183028 TTTGGGGA
66 TTTGGGGA
* * * ** * *
8183036 TTTAGCGGCGTTTTTGGGAAAGCGCCGC-TAAAAACCTAAACGAAACGATGTCGTTTTTTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCT
* *
8183100 TTCGTGGA
66 TTTGGGGA
** ** * * *
8183108 TACAGCGGCGTTTTTG-GAAAAGCGCCGCAAAAAAACCTAAGCATAACGGTGCCATTTTCTGATC
1 TTTAGCGGCGTTTTTGAG-AAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGC
*
8183172 TTTTGGGGC
65 TTTTGGGGA
*
8183181 TTTAGCGGCGTTTTTGGGAAAGCGCCGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGC
8183209 TAATGCTCAA
Statistics
Matches: 263, Mismatches: 51, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
71 1 0.00
72 119 0.45
73 142 0.54
74 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (73 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCT
TTTGGGGA
Found at i:8183091 original size:145 final size:144
Alignment explanation
Indices: 8182821--8183211 Score: 484
Period size: 145 Copynumber: 2.7 Consensus size: 144
8182811 TCAGGGCTTT
* * * * ** * *
8182821 AGCGGCGTTTTTGAGAAAGCGCCACATACAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTT
1 AGCGGCGTTTTT-AGAAAGCGCCGCAAAAAAACCTAAACCCAATAACGTCGTTTTCTGATCTTTT
* * * * *
8182886 GGGGATTTAGCGGCG-TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAATGATGCCGTTTTTT
65 GGGGATTTAGCGGCGTTTTTGGGAAAGCGCCGC-TAAAAACCTAAACCAAACGATGCCGTTTTTT
*
8182950 GAGCTTTCGTGGATAT
129 GAGCTTTCGTGGATAC
* * *
8182966 AGTGGTGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAACCCAATTACGTCGTTTTCTGATCTTTT
1 AGCGGCGTTTTT-AGAAAGCGCCGCAAAAAAACCTAAACCCAATAACGTCGTTTTCTGATCTTTT
* *
8183031 GGGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAAACCTAAACGAAACGATGTCGTTTTTTG
65 GGGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAAACCTAAACCAAACGATGCCGTTTTTTG
8183096 AGCTTTCGTGGATAC
130 AGCTTTCGTGGATAC
* * *
8183111 AGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCT-AA-GC-ATAACGGTGCCATTTTCTGATCT
1 AGCGGCGTTTTTAG-AAAGCGCCGCAAAAAAACCTAAACCCAATAAC-GT--CGTTTTCTGATCT
*
8183173 TTTGGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAA
62 TTTGGGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCTAA
8183212 TGCTCAAATA
Statistics
Matches: 215, Mismatches: 26, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
142 4 0.02
143 3 0.01
144 3 0.01
145 189 0.88
146 16 0.07
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (144 bp):
AGCGGCGTTTTTAGAAAGCGCCGCAAAAAAACCTAAACCCAATAACGTCGTTTTCTGATCTTTTG
GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAAACCTAAACCAAACGATGCCGTTTTTTGA
GCTTTCGTGGATAC
Found at i:8183232 original size:10 final size:10
Alignment explanation
Indices: 8183217--8183241 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8183207 GCTAATGCTC
8183217 AAATAGTTTA
1 AAATAGTTTA
8183227 AAATAGTTTA
1 AAATAGTTTA
8183237 AAATA
1 AAATA
8183242 TTTGTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (10 bp):
AAATAGTTTA
Found at i:8183446 original size:22 final size:21
Alignment explanation
Indices: 8183421--8183488 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
8183411 TCTAGTGTAA
8183421 GGGTTAGGAGCTTATGGTTTAG
1 GGGTTAGG-GCTTATGGTTTAG
* * *
8183443 GGGTTATGGGCTTAGGGTCTAT
1 GGGTTA-GGGCTTATGGTTTAG
*
8183465 GGGTTAATGGCTTATGGTTTAG
1 GGGTT-AGGGCTTATGGTTTAG
8183487 GG
1 GG
8183489 TTTAATCAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
22 34 0.92
23 3 0.08
ACGTcount: A:0.16, C:0.06, G:0.41, T:0.37
Consensus pattern (21 bp):
GGGTTAGGGCTTATGGTTTAG
Found at i:8183534 original size:15 final size:15
Alignment explanation
Indices: 8183508--8183576 Score: 77
Period size: 15 Copynumber: 4.6 Consensus size: 15
8183498 GAGTTTATGA
*
8183508 TTTAAGGGTTTAGGGG
1 TTTAA-GGTTTAGAGG
* *
8183524 TTTATGCTTTAGAGG
1 TTTAAGGTTTAGAGG
*
8183539 TTTAAGGTTTAAAGG
1 TTTAAGGTTTAGAGG
*
8183554 TTTAAGGTTTAGGGG
1 TTTAAGGTTTAGAGG
8183569 TTT-AGGTT
1 TTTAAGGTT
8183577 ATCATCTTAG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
14 5 0.11
15 36 0.80
16 4 0.09
ACGTcount: A:0.22, C:0.01, G:0.33, T:0.43
Consensus pattern (15 bp):
TTTAAGGTTTAGAGG
Found at i:8183574 original size:8 final size:8
Alignment explanation
Indices: 8183531--8183573 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
8183521 GGGTTTATGC
8183531 TTTAGAGG
1 TTTAGAGG
8183539 TTTA-AGG
1 TTTAGAGG
*
8183546 TTTAAAGG
1 TTTAGAGG
8183554 TTTA-AGG
1 TTTAGAGG
*
8183561 TTTAGGGG
1 TTTAGAGG
8183569 TTTAG
1 TTTAG
8183574 GTTATCATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 14 0.44
8 18 0.56
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.42
Consensus pattern (8 bp):
TTTAGAGG
Found at i:8183745 original size:14 final size:14
Alignment explanation
Indices: 8183666--8183747 Score: 58
Period size: 14 Copynumber: 5.9 Consensus size: 14
8183656 CAGTTTATGA
*
8183666 TTTAGTGTTAAGAG
1 TTTAGTGTTTAGAG
8183680 TTTAGTGTTTATG-G
1 TTTAGTGTTTA-GAG
* * *
8183694 TTTAGGGTGTAGGG
1 TTTAGTGTTTAGAG
* * * *
8183708 TGTAGGGCTTAGGG
1 TTTAGTGTTTAGAG
*
8183722 TTTATTGTTTAGAG
1 TTTAGTGTTTAGAG
*
8183736 TTTAGAGTTTAG
1 TTTAGTGTTTAG
8183748 CTAGTAGCTA
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
13 1 0.02
14 51 0.96
15 1 0.02
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.45
Consensus pattern (14 bp):
TTTAGTGTTTAGAG
Found at i:8183889 original size:103 final size:102
Alignment explanation
Indices: 8183735--8183946 Score: 379
Period size: 103 Copynumber: 2.1 Consensus size: 102
8183725 ATTGTTTAGA
8183735 GTTTAGAGTTTAGCTAGTAGCTAGAGTTTAGGGATTAATACGGGCATAGGGTATATAGGTTAAGA
1 GTTTAGAGTTTAGCTAGTAGCTAGAGTTTAGGGATTAATACGGGCATAGGGTATATAGGTTAAGA
8183800 AGGCATATGGTTTAGGGTTTAAATTTTATATTTTAAG
66 AGGCATATGGTTTAGGGTTTAAATTTTATATTTTAAG
* *
8183837 GTTTAGGGTTTAGCTAGTAGCTTAGAGTTTAGGGATTAATACGGGCATAGGGTATATGGGTTAAG
1 GTTTAGAGTTTAGCTAGTAGC-TAGAGTTTAGGGATTAATACGGGCATAGGGTATATAGGTTAAG
* *
8183902 AGGGCATATGGTTTAGGGTTTAAATTTTATATTTTAGG
65 AAGGCATATGGTTTAGGGTTTAAATTTTATATTTTAAG
8183940 GTTTAGA
1 GTTTAGA
8183947 ATTATGGTAA
Statistics
Matches: 104, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
102 20 0.19
103 84 0.81
ACGTcount: A:0.28, C:0.05, G:0.29, T:0.38
Consensus pattern (102 bp):
GTTTAGAGTTTAGCTAGTAGCTAGAGTTTAGGGATTAATACGGGCATAGGGTATATAGGTTAAGA
AGGCATATGGTTTAGGGTTTAAATTTTATATTTTAAG
Found at i:8183924 original size:24 final size:24
Alignment explanation
Indices: 8183863--8183921 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
8183853 GTAGCTTAGA
*
8183863 GTTTAGGGATTAATACGGGCATAGG
1 GTTTAGGG-TTAAGACGGGCATAGG
* *
8183888 GTATATGGGTTAAGA-GGGCATATG
1 GTTTA-GGGTTAAGACGGGCATAGG
8183912 GTTTAGGGTT
1 GTTTAGGGTT
8183922 TAAATTTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 5 0.17
24 12 0.41
25 9 0.31
26 3 0.10
ACGTcount: A:0.25, C:0.05, G:0.37, T:0.32
Consensus pattern (24 bp):
GTTTAGGGTTAAGACGGGCATAGG
Found at i:8183980 original size:103 final size:102
Alignment explanation
Indices: 8183767--8183970 Score: 250
Period size: 103 Copynumber: 2.0 Consensus size: 102
8183757 AGAGTTTAGG
8183767 GATTAATACGGGCATAGGGTATATAGGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATATT
1 GATTAATACGGGCATAGGGTATATAGGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATATT
** * ** ** **
8183832 TTAAGGTTTAGGGTTTAGCTAGTAGCTTAGAGTTTAGG
66 TTAAGGTTTAGAATTTAGCTAG-AACACAGAGTAAAAA
* *
8183870 GATTAATACGGGCATAGGGTATATGGGTTAAGAGGGCATATGGTTTAGGGTTTAAATTTTATATT
1 GATTAATACGGGCATAGGGTATATAGGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATATT
* * *
8183935 TTAGGGTTTAGAA-TTATGGTA-AACACAGGGTAAAAA
66 TTAAGGTTTAGAATTTA-GCTAGAACACAGAGTAAAAA
8183971 TATGTTAATA
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
101 7 0.08
102 3 0.03
103 76 0.88
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (102 bp):
GATTAATACGGGCATAGGGTATATAGGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATATT
TTAAGGTTTAGAATTTAGCTAGAACACAGAGTAAAAA
Found at i:8184480 original size:116 final size:113
Alignment explanation
Indices: 8184188--8184486 Score: 340
Period size: 116 Copynumber: 2.6 Consensus size: 113
8184178 TTAGTTTCCA
* *
8184188 TTTTAGTGGCGTTTCTTC-ATAAACGCCGCAATTATGTTTTAAGTCTTTGCTAAACACTGTCG-T
1 TTTTAGTGGCGTTT-TTCAATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCTGTCGTT
* * **
8184251 TTTAAATTGCGTTTTAGTGGCGTTTTCTCTTATGCACCGCAAAATTTCAG
65 TTTATATTGCGTTTTAGTGGCATTTTCTCTTATG-ACCGCAAAAGGTCAG
* *
8184301 TTTTTGTGGCGTTTTT-ATGATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCAGTCGT
1 TTTTAGTGGCGTTTTTCA--ATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCTGTCGT
* *
8184365 TTTTATTTTGCGTTATTAGTGGCATTTT-TCGTTAAATG-CCGCAATAGGT-ATG
64 TTTTATATTGCGTT-TTAGTGGCATTTTCTC-TT--ATGACCGCAAAAGGTCA-G
* * * *
8184417 TTTTAGTGGCGTTTTGTCAATAAACGCCGCAAATATGTTTTAAGTGTTTGCTAAACGGTGTCGTA
1 TTTTAGTGGCGTTTT-TCAATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCTGTCGTT
8184482 TTTAT
65 TTTAT
8184487 CTGGCATTTT
Statistics
Matches: 159, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
112 2 0.01
113 13 0.08
114 41 0.26
115 15 0.09
116 83 0.52
117 1 0.01
118 4 0.03
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (113 bp):
TTTTAGTGGCGTTTTTCAATAAACGCCGCAATTATGTTTTAAGTATTTGCTAAACGCTGTCGTTT
TTATATTGCGTTTTAGTGGCATTTTCTCTTATGACCGCAAAAGGTCAG
Found at i:8184657 original size:25 final size:24
Alignment explanation
Indices: 8184605--8184673 Score: 68
Period size: 25 Copynumber: 2.9 Consensus size: 24
8184595 CCCCACTCAG
* * * *
8184605 ATTTCCCCAATCTCATTT-CCCTA
1 ATTTCCCAAATTTTATTTCCCCCA
*
8184628 ATTTCCCAAATATTTCTTTCCCCCA
1 ATTTCCCAAAT-TTTATTTCCCCCA
*
8184653 ATTTCCCCAATTTTATTTCCC
1 ATTTCCCAAATTTTATTTCCC
8184674 GAAATCCCCA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
23 10 0.27
24 13 0.35
25 14 0.38
ACGTcount: A:0.22, C:0.36, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTTCCCAAATTTTATTTCCCCCA
Found at i:8186892 original size:9 final size:9
Alignment explanation
Indices: 8186847--8187142 Score: 227
Period size: 9 Copynumber: 31.4 Consensus size: 9
8186837 TTTATATATA
*
8186847 AACTTGCAT
1 AACTTACAT
8186856 AACTTACTCAGT
1 AACTTA--CA-T
*
8186868 AACATA-AT
1 AACTTACAT
*
8186876 ATCTTACAT
1 AACTTACAT
8186885 AACTTACAT
1 AACTTACAT
*
8186894 AAATTACAT
1 AACTTACAT
* *
8186903 AAATTAAAT
1 AACTTACAT
8186912 AACTTACAT
1 AACTTACAT
8186921 AACTTACAT
1 AACTTACAT
* *
8186930 AAATTAAAT
1 AACTTACAT
8186939 AACTTACAT
1 AACTTACAT
8186948 AACTTACAT
1 AACTTACAT
*
8186957 AAATTACAT
1 AACTTACAT
* *
8186966 AAATTAAAT
1 AACTTACAT
8186975 AACTTACAT
1 AACTTACAT
8186984 AACTTACAT
1 AACTTACAT
* *
8186993 AAATTAAAT
1 AACTTACAT
8187002 AACTTACAT
1 AACTTACAT
8187011 AACTTACAT
1 AACTTACAT
* *
8187020 AAATTAAAT
1 AACTTACAT
8187029 AACTTACATATT
1 AACTTAC--A-T
8187041 AACTTACAT
1 AACTTACAT
* *
8187050 AAGTTATCTAC
1 AACTTA-C-AT
*
8187061 AAGCTTATATAT
1 AA-C-T-TACAT
*
8187073 AAACTTGCAT
1 -AACTTACAT
8187083 AACTTACAT
1 AACTTACAT
*
8187092 AA-TAACAT
1 AACTTACAT
8187100 AATATCTTACAT
1 -A-A-CTTACAT
8187112 AACTTACAT
1 AACTTACAT
* *
8187121 AAATTACAC
1 AACTTACAT
* *
8187130 AAATTAAAT
1 AACTTACAT
8187139 AACT
1 AACT
8187143 GGCGTTTTAA
Statistics
Matches: 230, Mismatches: 40, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
8 10 0.04
9 179 0.78
10 7 0.03
11 8 0.03
12 21 0.09
13 3 0.01
14 2 0.01
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.34
Consensus pattern (9 bp):
AACTTACAT
Found at i:8186955 original size:63 final size:63
Alignment explanation
Indices: 8186873--8187142 Score: 328
Period size: 63 Copynumber: 4.1 Consensus size: 63
8186863 TCAGTAACAT
*
8186873 AATATCTTACATAACTTACATAAATTACATAAATTAAATAACTTACATAACTTACATAAATTA
1 AATAACTTACATAACTTACATAAATTACATAAATTAAATAACTTACATAACTTACATAAATTA
8186936 AATAACTTACATAACTTACATAAATTACATAAATTAAATAACTTACATAACTTACATAAATTA
1 AATAACTTACATAACTTACATAAATTACATAAATTAAATAACTTACATAACTTACATAAATTA
* * *
8186999 AATAACTTACATAACTTACATAAATTAAATAACTTACATATTAACTTACATAAGTTATC-TACAA
1 AATAACTTACATAACTTACATAAATTACATAAATTA-A-A-TAACTTACATAACTTA-CATA-AA
8187063 GCTTA
61 --TTA
* * * * *
8187068 TATATAAACTTGCATAACTTACAT-AATAACATAATATCTTACATAACTTACATAAATTACACAA
1 -A-AT-AACTTACATAACTTACATAAATTACATAA-A--TTAAATAACTTACATAACTTACATAA
8187132 ATTA
60 ATTA
8187136 AATAACT
1 AATAACT
8187143 GGCGTTTTAA
Statistics
Matches: 182, Mismatches: 11, Indels: 26
0.83 0.05 0.12
Matches are distributed among these distances:
63 96 0.53
64 1 0.01
65 5 0.03
66 19 0.10
67 4 0.02
68 3 0.02
69 3 0.02
70 4 0.02
71 26 0.14
72 18 0.10
74 3 0.02
ACGTcount: A:0.50, C:0.15, G:0.01, T:0.34
Consensus pattern (63 bp):
AATAACTTACATAACTTACATAAATTACATAAATTAAATAACTTACATAACTTACATAAATTA
Found at i:8187101 original size:27 final size:28
Alignment explanation
Indices: 8186844--8187142 Score: 254
Period size: 27 Copynumber: 10.6 Consensus size: 28
8186834 AAGTTTATAT
* * * *
8186844 ATAAACTTGCATAACTTAC-TCAGTAAC
1 ATAAACTTACATAACTTACATAACTTAC
*
8186871 ATAATATCTTACATAACTTACATAAATTAC
1 ATAA-A-CTTACATAACTTACATAACTTAC
*
8186901 ATAAA-TTAAATAACTTACATAACTTAC
1 ATAAACTTACATAACTTACATAACTTAC
*
8186928 ATAAA-TTAAATAACTTACATAACTTAC
1 ATAAACTTACATAACTTACATAACTTAC
* *
8186955 ATAAA-TTACATAAATTAAATAACTTAC
1 ATAAACTTACATAACTTACATAACTTAC
* *
8186982 AT-AACTTACATAAATTAAATAACTTAC
1 ATAAACTTACATAACTTACATAACTTAC
* *
8187009 AT-AACTTACATAAATTAAATAACTTAC
1 ATAAACTTACATAACTTACATAACTTAC
* * *
8187036 ATATTAACTTACATAAGTTATCTACAAGCTTATAT
1 ATA--AACTTACATAACTTA-C-ATAA-C-T-TAC
* *
8187071 ATAAACTTGCATAACTTACATAA-TAAC
1 ATAAACTTACATAACTTACATAACTTAC
*
8187098 ATAATATCTTACATAACTTACATAAATTAC
1 ATAA-A-CTTACATAACTTACATAACTTAC
* *
8187128 ACAAA-TTAAATAACT
1 ATAAACTTACATAACT
8187143 GGCGTTTTAA
Statistics
Matches: 235, Mismatches: 22, Indels: 30
0.82 0.08 0.10
Matches are distributed among these distances:
26 2 0.01
27 142 0.60
28 3 0.01
29 32 0.14
30 29 0.12
31 3 0.01
32 4 0.02
33 14 0.06
34 1 0.00
35 5 0.02
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.34
Consensus pattern (28 bp):
ATAAACTTACATAACTTACATAACTTAC
Found at i:8192633 original size:21 final size:21
Alignment explanation
Indices: 8192609--8192662 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
8192599 TGCGGTAGCG
8192609 AGGGAAGCAGCA-GCTGCAGCA
1 AGGGAAGCAG-AGGCTGCAGCA
*
8192630 AGGGAAGCAGAGGCTGCAGCG
1 AGGGAAGCAGAGGCTGCAGCA
*
8192651 AGAGAAGCAGAG
1 AGGGAAGCAGAG
8192663 CAAAGCAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 1 0.03
21 29 0.97
ACGTcount: A:0.35, C:0.19, G:0.43, T:0.04
Consensus pattern (21 bp):
AGGGAAGCAGAGGCTGCAGCA
Found at i:8193122 original size:42 final size:42
Alignment explanation
Indices: 8193058--8193158 Score: 168
Period size: 42 Copynumber: 2.4 Consensus size: 42
8193048 TAGCAGCGCA
*
8193058 TCTTTAGCGGCGTTTTTCTCTAAGCGCCGCTAAAGAACATGG
1 TCTTTAGCGGCGTTTTTCTCTAAGCGCCGCTAAAGAAAATGG
*
8193100 TTTTTAGCGGCGTTTCTT-TCTAAGCGCCGCTAAAGAAAATGG
1 TCTTTAGCGGCGTTT-TTCTCTAAGCGCCGCTAAAGAAAATGG
8193142 TCTTTAGCGGCGTTTTT
1 TCTTTAGCGGCGTTTTT
8193159 GTTTGTAAAC
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
41 2 0.04
42 51 0.93
43 2 0.04
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.36
Consensus pattern (42 bp):
TCTTTAGCGGCGTTTTTCTCTAAGCGCCGCTAAAGAAAATGG
Found at i:8193281 original size:22 final size:22
Alignment explanation
Indices: 8193250--8193293 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8193240 TAGTGGCGTT
* *
8193250 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAGACCTA
8193272 AAAAAACGCCGCTAAAGACCTA
1 AAAAAACGCCGCTAAAGACCTA
8193294 TTTTGGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAGACCTA
Found at i:8196407 original size:22 final size:22
Alignment explanation
Indices: 8196380--8196424 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
8196370 TATATATATT
8196380 TTTTA-TATTGTTTTTCATTTGG
1 TTTTATTATT-TTTTTCATTTGG
*
8196402 TTTTATTTATTTTTTTGATTTGG
1 TTTTA-TTATTTTTTTCATTTGG
8196425 GCCCGGGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 5 0.25
23 11 0.55
24 4 0.20
ACGTcount: A:0.13, C:0.02, G:0.13, T:0.71
Consensus pattern (22 bp):
TTTTATTATTTTTTTCATTTGG
Found at i:8196699 original size:44 final size:44
Alignment explanation
Indices: 8196651--8196770 Score: 143
Period size: 44 Copynumber: 2.7 Consensus size: 44
8196641 TCGAATCCAA
* *
8196651 TCTGCTCCACTGCAACCTCAGGGAGATAAGATTTG-CTTCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCTTCTT-AG
* ** * *
8196695 TCTGCCCCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCTTCTTAG
* *
8196739 TCTACTCCGCTGCAACTTCAGGGAGATAAGAC
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAC
8196771 CCGATGTGAT
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
44 57 0.92
45 5 0.08
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.29
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCTTCTTAG
Found at i:8196931 original size:87 final size:87
Alignment explanation
Indices: 8196780--8196940 Score: 193
Period size: 87 Copynumber: 1.9 Consensus size: 87
8196770 CCCGATGTGA
* * *
8196780 TCTGCTCAACTACTGCTTAGGGAGATAAGATCTATTGTTTTAATCCACTCCACTGCAACTTCAGG
1 TCTGCTCAACTACTGCTTAGGGAGAGAAGATCTAATGTTTTAATCCACTCCACTGCAACGTCAGG
*
8196845 GAGATAGGATTGATTTCTTCTG
66 GACATAGGATTGATTTCTTCTG
* * * **
8196867 TCTGCTCCACTACTGCTTAGGGAGAGAAGACTTGTAAT-TTTTAA-CCTATTCCACTGC-TGGTC
1 TCTGCTCAACTACTGCTTAGGGAGAGAAGA--TCTAATGTTTTAATCC-ACTCCACTGCAACGTC
8196929 AGGGACATAGGA
63 AGGGACATAGGA
8196941 CTTGTAATCT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
87 43 0.69
88 15 0.24
89 4 0.06
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (87 bp):
TCTGCTCAACTACTGCTTAGGGAGAGAAGATCTAATGTTTTAATCCACTCCACTGCAACGTCAGG
GACATAGGATTGATTTCTTCTG
Found at i:8197075 original size:87 final size:87
Alignment explanation
Indices: 8196981--8197392 Score: 608
Period size: 87 Copynumber: 4.7 Consensus size: 87
8196971 CACATGATGA
* * * * * *
8196981 CAAGATCTGTTATCTTTAATCAGCTCCACTGCAAACGATGGAGGCAAGGCTTCGTTTTTGATCTG
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTG
*
8197046 CTTCGTTGTTAACACAGGAAGG
66 CTTCGCTGTTAACACAGGAAGG
* * * * * *
8197068 CAAGATCTGTTTTTTTTAACCAGTTCCACTGCAAACGATGGAGGCAAGGCTTTGTTTTCGATCTG
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTG
8197133 CTTCGCTGTTAACACAGGAAGG
66 CTTCGCTGTTAACACAGGAAGG
*
8197155 CAAGATCTACTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTG
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTG
* * *
8197220 CTTCACTGTTAACGCAGGAAAG
66 CTTCGCTGTTAACACAGGAAGG
* * * *
8197242 CAAGATCTGCTGTCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTCGTTTCCAATCTG
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTG
* * *
8197307 CTTCGCTGCTAACGCAGAAAGG
66 CTTCGCTGTTAACACAGGAAGG
8197329 CAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCT
1 CAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCT
8197393 TCACTGATCT
Statistics
Matches: 295, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 295 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.29
Consensus pattern (87 bp):
CAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTG
CTTCGCTGTTAACACAGGAAGG
Found at i:8197158 original size:43 final size:43
Alignment explanation
Indices: 8197022--8197158 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
8197012 CAAACGATGG
* *
8197022 AGGCAAGGCTTCGTTTTTGATCTGCTTCGTTGTTAACACAGGA
1 AGGCAAGGCTTTGTTTTTGATCTGCTTCGCTGTTAACACAGGA
* * * * * * *
8197065 AGGCAAGATCTGTTTTTTTTAACCAG-TTCCACTG-CAA-ACGATGG-
1 AGGCAAG-GCT-TTGTTTTTGATCTGCTT-CGCTGTTAACAC-A-GGA
*
8197109 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACACAGGA
1 AGGCAAGGCTTTGTTTTTGATCTGCTTCGCTGTTAACACAGGA
8197152 AGGCAAG
1 AGGCAAG
8197159 ATCTACTATC
Statistics
Matches: 68, Mismatches: 17, Indels: 18
0.66 0.17 0.17
Matches are distributed among these distances:
42 15 0.22
43 23 0.34
44 16 0.24
45 14 0.21
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (43 bp):
AGGCAAGGCTTTGTTTTTGATCTGCTTCGCTGTTAACACAGGA
Found at i:8198632 original size:7 final size:7
Alignment explanation
Indices: 8198620--8198657 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
8198610 ATTTTTACTC
8198620 TTTCATT
1 TTTCATT
8198627 TTTCATTT
1 TTTCA-TT
8198635 TTTCA-T
1 TTTCATT
*
8198641 TCTCATT
1 TTTCATT
8198648 TTTCATT
1 TTTCATT
8198655 TTT
1 TTT
8198658 TTTGAAATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 5 0.19
7 15 0.56
8 7 0.26
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTCATT
Found at i:8211825 original size:30 final size:28
Alignment explanation
Indices: 8211791--8211864 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 28
8211781 TTTTGTTATT
*
8211791 ATATTGCTACTATTTTGTTGTTATTGTTTG
1 ATATTGCTACTATTTTGTT-TTATTG-TTC
8211821 ATATTG-TA-TAACTTTTGTTTTATTGTTC
1 ATATTGCTACT-A-TTTTGTTTTATTGTTC
*
8211849 ATTTTGCTACTATTTT
1 ATATTGCTACTATTTT
8211865 AGATGCTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
28 12 0.32
29 12 0.32
30 14 0.37
ACGTcount: A:0.19, C:0.08, G:0.12, T:0.61
Consensus pattern (28 bp):
ATATTGCTACTATTTTGTTTTATTGTTC
Found at i:8213230 original size:13 final size:13
Alignment explanation
Indices: 8213212--8213254 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
8213202 ACTTAGTGTC
*
8213212 ATGCAAGCTCGAT
1 ATGCAAACTCGAT
*
8213225 ATGCAAACTCAAT
1 ATGCAAACTCGAT
* *
8213238 GTGTAAACTCGAT
1 ATGCAAACTCGAT
8213251 ATGC
1 ATGC
8213255 GAGCTCAGTG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (13 bp):
ATGCAAACTCGAT
Found at i:8218543 original size:14 final size:14
Alignment explanation
Indices: 8218520--8218566 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
8218510 TTAAATTTTC
* *
8218520 TTAAGGTTAATTAG
1 TTAAGCTTAATTAA
8218534 TTAAGCTTAAGTTAA
1 TTAAGCTTAA-TTAA
*
8218549 TTAAACTTAATTAA
1 TTAAGCTTAATTAA
8218563 TTAA
1 TTAA
8218567 TCCCTAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.43
Consensus pattern (14 bp):
TTAAGCTTAATTAA
Found at i:8219399 original size:14 final size:14
Alignment explanation
Indices: 8219380--8219419 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
8219370 TTGTTTGCCA
*
8219380 GTAAAATGTTTTCC
1 GTAAAATGATTTCC
*
8219394 GTAAAATGATTTCT
1 GTAAAATGATTTCC
*
8219408 GGAAAATGATTT
1 GTAAAATGATTT
8219420 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (14 bp):
GTAAAATGATTTCC
Found at i:8219428 original size:20 final size:20
Alignment explanation
Indices: 8219403--8219441 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
8219393 CGTAAAATGA
8219403 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
8219423 TTTCTGGAAAATGATTTAC
1 TTTCTGGAAAATGATTTAC
8219442 GAAAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:8220686 original size:10 final size:10
Alignment explanation
Indices: 8220671--8220696 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8220661 TCATTAAGTG
8220671 CTAACAAATA
1 CTAACAAATA
8220681 CTAACAAATA
1 CTAACAAATA
8220691 CTAACA
1 CTAACA
8220697 GATCAGTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.23, G:0.00, T:0.19
Consensus pattern (10 bp):
CTAACAAATA
Found at i:8222132 original size:57 final size:57
Alignment explanation
Indices: 8222025--8222132 Score: 137
Period size: 57 Copynumber: 1.9 Consensus size: 57
8222015 TCGATAAAAT
* * ****
8222025 ATCTGACCCCATATAGAGAAAATACTAAACAAAAAATGGATCGGTGGCAAAAAATGG
1 ATCTGACCCCATACAGAGAAAATACTAAACAAAAAACGGATCAACCGCAAAAAATGG
*
8222082 ATCTGACCCCATACAGAGAAACTACTAAAC-AAAAACGGATCAAACCGCAAA
1 ATCTGACCCCATACAGAGAAAATACTAAACAAAAAACGGATC-AACCGCAAA
8222133 TGAAGAAATC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
56 10 0.23
57 33 0.77
ACGTcount: A:0.48, C:0.21, G:0.16, T:0.15
Consensus pattern (57 bp):
ATCTGACCCCATACAGAGAAAATACTAAACAAAAAACGGATCAACCGCAAAAAATGG
Found at i:8225577 original size:34 final size:34
Alignment explanation
Indices: 8225539--8225632 Score: 116
Period size: 34 Copynumber: 2.8 Consensus size: 34
8225529 AACCATTTAG
*
8225539 CACACCAGATACTCGTATGAGCTAATCCATCCAA
1 CACACCAAATACTCGTATGAGCTAATCCATCCAA
* * * * *
8225573 CACACTAAATACTCGTATAACCTAATCCATCTAG
1 CACACCAAATACTCGTATGAGCTAATCCATCCAA
* *
8225607 CACACCAAATGCTCGTATGAGATAAT
1 CACACCAAATACTCGTATGAGCTAAT
8225633 TGATCCAGAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.37, C:0.29, G:0.11, T:0.23
Consensus pattern (34 bp):
CACACCAAATACTCGTATGAGCTAATCCATCCAA
Found at i:8227710 original size:13 final size:13
Alignment explanation
Indices: 8227692--8227721 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
8227682 TAATGATCCC
8227692 ATAACCATTTCAA
1 ATAACCATTTCAA
8227705 ATAACCATTTCAA
1 ATAACCATTTCAA
8227718 ATAA
1 ATAA
8227722 ATCGTCACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAACCATTTCAA
Found at i:8227947 original size:25 final size:25
Alignment explanation
Indices: 8227918--8227965 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8227908 TATAGCCTTT
* *
8227918 ATGAGCTTCCTGTTACATGGCTCAC
1 ATGAGATTCCCGTTACATGGCTCAC
*
8227943 ATGAGATTCCCGTTATATGGCTC
1 ATGAGATTCCCGTTACATGGCTC
8227966 GAGAGAGAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (25 bp):
ATGAGATTCCCGTTACATGGCTCAC
Found at i:8233286 original size:51 final size:51
Alignment explanation
Indices: 8233210--8233404 Score: 241
Period size: 51 Copynumber: 3.8 Consensus size: 51
8233200 CATGAGAACT
* * * ***
8233210 CATGTGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGTTATGGTCA
* *
8233261 CATGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATAGCTT-TGGTTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAG-TTATGGTCA
* * * *
8233312 CGTATGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT-GGTATTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGTTA-TGGTCA
*
8233363 CATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAG
8233405 CATTGATCAT
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 1 0.01
51 117 0.96
52 3 0.02
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGTTATGGTCA
Found at i:8233390 original size:102 final size:102
Alignment explanation
Indices: 8233214--8233405 Score: 296
Period size: 102 Copynumber: 1.9 Consensus size: 102
8233204 AGAACTCATG
* *
8233214 TGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGGTCACATGTGTAGTACTAAGTG
1 TGTAGTACTATGTGCAGGCTACTATGAGTACAAGATAGTTATGGTCACATGTGTAGTACTAAGTG
8233279 CAAGCTACTATGTGTACCGGATAGCTTTGGTTACGTA
66 CAAGCTACTATGTGTACCGGATAGCTTTGGTTACGTA
* ** *
8233316 TGTAGTACTATGTGCAGGCTACTATGTGTACCGGAT-GGTATTGGTCACATGTGTAGTACTAAGT
1 TGTAGTACTATGTGCAGGCTACTATGAGTACAAGATAGTTA-TGGTCACATGTGTAGTACTAAGT
* *
8233380 GTAGGCTACTATGTGTACCGGATAGC
65 GCAAGCTACTATGTGTACCGGATAGC
8233406 ATTGATCATA
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 3 0.04
102 78 0.96
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (102 bp):
TGTAGTACTATGTGCAGGCTACTATGAGTACAAGATAGTTATGGTCACATGTGTAGTACTAAGTG
CAAGCTACTATGTGTACCGGATAGCTTTGGTTACGTA
Found at i:8238432 original size:27 final size:27
Alignment explanation
Indices: 8238402--8238456 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
8238392 CAAATTTTCG
*
8238402 AAGGTTACAAGGCCTAAAATGGTTCAC
1 AAGGTTACAAGGCCTAAAATGGTCCAC
* *
8238429 AAGGTTATAAGTCCTAAAATGGTCCAC
1 AAGGTTACAAGGCCTAAAATGGTCCAC
8238456 A
1 A
8238457 CGGCCTGGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (27 bp):
AAGGTTACAAGGCCTAAAATGGTCCAC
Found at i:8242187 original size:20 final size:20
Alignment explanation
Indices: 8242162--8242207 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
8242152 ATCTTGATCT
8242162 TTACTTCTTTACTTACTCT-C
1 TTACTTCTTTACTTACT-TGC
*
8242182 TTACTTGTTTACTTACTTGC
1 TTACTTCTTTACTTACTTGC
8242202 TTACTT
1 TTACTT
8242208 AAATAACTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.15, C:0.24, G:0.04, T:0.57
Consensus pattern (20 bp):
TTACTTCTTTACTTACTTGC
Found at i:8243945 original size:6 final size:6
Alignment explanation
Indices: 8243879--8243947 Score: 75
Period size: 6 Copynumber: 11.0 Consensus size: 6
8243869 TTTATTTTCC
* * * *
8243879 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
8243927 TTTTAGCT ATTTTAT TTTTAT
1 TTTTA--T -TTTTAT TTTTAT
8243948 GTTCTTAAAC
Statistics
Matches: 59, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
6 52 0.88
7 1 0.02
8 1 0.02
9 5 0.08
ACGTcount: A:0.17, C:0.01, G:0.07, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:8245796 original size:30 final size:30
Alignment explanation
Indices: 8245762--8245825 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
8245752 CGGCAGATTT
* * *
8245762 TGTGAGCCACATAGGCTGGGCACATGCCCA
1 TGTGAGACACATAGGCTGGACACACGCCCA
*
8245792 TGTGAGACACATAGGCTGGACACACGCCCC
1 TGTGAGACACATAGGCTGGACACACGCCCA
8245822 TGTG
1 TGTG
8245826 CCAGCCCGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (30 bp):
TGTGAGACACATAGGCTGGACACACGCCCA
Found at i:8246009 original size:45 final size:45
Alignment explanation
Indices: 8245937--8246032 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
8245927 AGAGACAGGG
* *
8245937 GAGCCATCAGAGCAGATCAAAGAAAACACTCAAGGAACACCATTA
1 GAGCCATCAGAGAAGATCAAAGAAAACACTCAAAGAACACCATTA
* * * *
8245982 GAGCCATCAGATAAGATCGAAGGAAACACTCAAAGAACACCATTG
1 GAGCCATCAGAGAAGATCAAAGAAAACACTCAAAGAACACCATTA
8246027 GAGCCA
1 GAGCCA
8246033 CTTCTGAAGC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.45, C:0.24, G:0.20, T:0.11
Consensus pattern (45 bp):
GAGCCATCAGAGAAGATCAAAGAAAACACTCAAAGAACACCATTA
Found at i:8256432 original size:46 final size:44
Alignment explanation
Indices: 8256373--8256467 Score: 127
Period size: 46 Copynumber: 2.1 Consensus size: 44
8256363 ACCTAATTTG
* *
8256373 TTGTAAATGAGCAAGGTCAAAGGGTTAAAGTTTTTTGAAAGAATT
1 TTGTAAATGAGCAAGGTCAAAGAGTTAAAATTTTTT-AAAGAATT
* * *
8256418 TTGTGAAATTAGCAAGGTGACAGAGTTAAAATTTTTTAAAGAATT
1 TTGT-AAATGAGCAAGGTCAAAGAGTTAAAATTTTTTAAAGAATT
8256463 TTGTA
1 TTGTA
8256468 TGATCAACAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
44 1 0.02
45 16 0.36
46 27 0.61
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.36
Consensus pattern (44 bp):
TTGTAAATGAGCAAGGTCAAAGAGTTAAAATTTTTTAAAGAATT
Found at i:8262502 original size:59 final size:59
Alignment explanation
Indices: 8262439--8262602 Score: 184
Period size: 59 Copynumber: 2.8 Consensus size: 59
8262429 TAGATCAAAT
* * *
8262439 GCAAAGAGTTTGAGTATGTGTTGCTAGGACTTGTGAACAAGTGCTAGAAAAAAATGAGG
1 GCAAAGAGTTTGAGTATGTGTTGCTTGGACTTGGGAACAAGTGCTAGAAAAAAATGAAG
** * * * * *
8262498 GCAAAGAGTTTGAGCCTGTGTTGCTTGGACTAGGGAACAAGTGTTAGAATAGAATGAAT
1 GCAAAGAGTTTGAGTATGTGTTGCTTGGACTTGGGAACAAGTGCTAGAAAAAAATGAAG
* * * ***
8262557 GCATAGGGTTTGAATACAAGTTGCTTGGACTTGGGAACAAGTGCTA
1 GCAAAGAGTTTGAGTATGTGTTGCTTGGACTTGGGAACAAGTGCTA
8262603 TATAGGGGTC
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
59 85 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (59 bp):
GCAAAGAGTTTGAGTATGTGTTGCTTGGACTTGGGAACAAGTGCTAGAAAAAAATGAAG
Found at i:8270225 original size:107 final size:107
Alignment explanation
Indices: 8270091--8270303 Score: 340
Period size: 107 Copynumber: 2.0 Consensus size: 107
8270081 GCATGTAATA
*
8270091 CATCTAAGGTTTACTAAGGGGAAAAAATATTAGCAATTTCATATTTCCATTGCAT-GGGCACTCA
1 CATCTAAGGTTTACTAAGGGGAAAAAATATGAGCAATTTCATATTTCCATTGCATGGGGC-CTCA
8270155 TAACATATGAATCCATAATTCAGAGCAAACTTTCATGCTCAAT
65 TAACATATGAATCCATAATTCAGAGCAAACTTTCATGCTCAAT
*
8270198 CATCTAAGGTTTACTAAGAGGG-GAAAATATGAGCAATTTCATATTTCCATTGCATGGGGCCTCA
1 CATCTAAGGTTTACTAAG-GGGAAAAAATATGAGCAATTTCATATTTCCATTGCATGGGGCCTCA
* * * *
8270262 TAACATATGAATCCATAGTTCAGAGCACACTTTTATGTTCAA
65 TAACATATGAATCCATAATTCAGAGCAAACTTTCATGCTCAA
8270304 CAAGCACTCT
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
107 91 0.93
108 7 0.07
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (107 bp):
CATCTAAGGTTTACTAAGGGGAAAAAATATGAGCAATTTCATATTTCCATTGCATGGGGCCTCAT
AACATATGAATCCATAATTCAGAGCAAACTTTCATGCTCAAT
Found at i:8273912 original size:45 final size:44
Alignment explanation
Indices: 8273856--8273943 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 44
8273846 AGGGAAACCC
** *
8273856 ATGGCAAAGTTGGAAGTTTTCGTAAAAGATTTTAAAGAACCCACA
1 ATGGCAAAGTTGGAAGTTTTAAT-AAAGATGTTAAAGAACCCACA
*
8273901 ATGGCAAAGTTGGAAGTTTTAATGAAGATGTTAAAGAACCCAC
1 ATGGCAAAGTTGGAAGTTTTAATAAAGATGTTAAAGAACCCAC
8273944 GTTAAAGTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 18 0.46
45 21 0.54
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (44 bp):
ATGGCAAAGTTGGAAGTTTTAATAAAGATGTTAAAGAACCCACA
Found at i:8274900 original size:105 final size:105
Alignment explanation
Indices: 8274783--8274994 Score: 397
Period size: 105 Copynumber: 2.0 Consensus size: 105
8274773 AACTCCGAAA
8274783 TACCCTCAAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTATCAAAAATT
1 TACCCTCAAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTATCAAAAATT
8274848 TGCCTCACAAAAATTTGGAATAAAACAAATACTCTATTTT
66 TGCCTCACAAAAATTTGGAATAAAACAAATACTCTATTTT
* *
8274888 TACCCTCGAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTCTCAAAAATT
1 TACCCTCAAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTATCAAAAATT
*
8274953 TGCCTCACACAAATTTGGAATAAAACAAATACTCTATTTT
66 TGCCTCACAAAAATTTGGAATAAAACAAATACTCTATTTT
8274993 TA
1 TA
8274995 TTCGACCTCC
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 104 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26
Consensus pattern (105 bp):
TACCCTCAAAAGTAACAAACTCCAAACTAAATAGTAAGAGAAGAATCACTCTACTATCAAAAATT
TGCCTCACAAAAATTTGGAATAAAACAAATACTCTATTTT
Found at i:8287544 original size:163 final size:161
Alignment explanation
Indices: 8287322--8287648 Score: 496
Period size: 163 Copynumber: 2.0 Consensus size: 161
8287312 ACTAAGTTTG
8287322 ATTAATTAAACTTGAAAAGTTAAATGATTATTTAAAAAAAAATTATTTTCTGACTGTAGGTGACA
1 ATTAATTAAACTTGAAAAGTTAAATGATTATTTAAAAAAAAATTATTTTCTGACTGTAGGTGACA
* * * * *
8287387 TATTAACAAATTATCTTTGTATGCGTTTGCCACACTATTAACCGAATGCCATATAGGAGTTAAGA
66 TATTAACAAATCATATTTGTATGCATTTGCCACACCATTAACCGAATGCCATATAGGAGTTAACA
8287452 ATGCTATTGCTA-ACATTAGCATTTTCCATCCA
131 ATGCTATTGC-AGACATTAGCA-TTTCCATCCA
* *
8287484 ATTAATTAAAACTTGAATAAGTTAAATGATTATTTTAAAAAAAA-TATTTTGTGACTGTAGGTGA
1 ATTAATT-AAACTTGAA-AAGTTAAATGATTATTTAAAAAAAAATTATTTTCTGACTGTAGGTGA
* ** * *
8287548 CATGTTAGGAAATCATATTTGTATGCATTTGCCACACCATTAACTGAATGCCATATGGGAGTTAA
64 CATATTAACAAATCATATTTGTATGCATTTGCCACACCATTAACCGAATGCCATATAGGAGTTAA
8287613 CAATGCTATTGCAGACATTAGCATTTCCATCCA
129 CAATGCTATTGCAGACATTAGCATTTCCATCCA
8287646 ATT
1 ATT
8287649 TGGGTTTTGA
Statistics
Matches: 150, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
162 21 0.14
163 104 0.69
164 25 0.17
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (161 bp):
ATTAATTAAACTTGAAAAGTTAAATGATTATTTAAAAAAAAATTATTTTCTGACTGTAGGTGACA
TATTAACAAATCATATTTGTATGCATTTGCCACACCATTAACCGAATGCCATATAGGAGTTAACA
ATGCTATTGCAGACATTAGCATTTCCATCCA
Found at i:8290910 original size:39 final size:39
Alignment explanation
Indices: 8290838--8290955 Score: 184
Period size: 39 Copynumber: 3.0 Consensus size: 39
8290828 GGCGTAGAGT
** *
8290838 TAGACTTTAGTTTTTTTTTTTATTGGGCT-GGTAATTGGG
1 TAGACTTTAG-TTTTAGTTTTATTGGGTTGGGTAATTGGG
8290877 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
*
8290916 TAGACTTTAGTTTTAGTTTTATTGGGTTGTGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
8290955 T
1 T
8290956 TGAGTTTGAT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
38 15 0.20
39 59 0.80
ACGTcount: A:0.17, C:0.03, G:0.28, T:0.52
Consensus pattern (39 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGG
Found at i:8291617 original size:13 final size:13
Alignment explanation
Indices: 8291599--8291635 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
8291589 CTTTTATAAA
8291599 AGATATTTTATAT
1 AGATATTTTATAT
*
8291612 AGATATTTTTTAT
1 AGATATTTTATAT
8291625 AGATATTTTAT
1 AGATATTTTAT
8291636 TATTTTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (13 bp):
AGATATTTTATAT
Found at i:8291624 original size:15 final size:14
Alignment explanation
Indices: 8291585--8291633 Score: 57
Period size: 13 Copynumber: 3.5 Consensus size: 14
8291575 TATTAATAAA
*
8291585 ATATCTTTTATAAAAG
1 ATAT-TTTTAT-ATAG
8291601 ATA-TTTTATATAG
1 ATATTTTTATATAG
8291614 ATATTTTT-TATAG
1 ATATTTTTATATAG
8291627 ATATTTT
1 ATATTTT
8291634 ATTATTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
13 18 0.58
14 10 0.32
16 3 0.10
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (14 bp):
ATATTTTTATATAG
Found at i:8297332 original size:171 final size:171
Alignment explanation
Indices: 8297041--8297382 Score: 612
Period size: 171 Copynumber: 2.0 Consensus size: 171
8297031 GGAACGTAGT
*
8297041 GAGTTATGAACACAACTTGCCTTTTTAACTTTCATGAAATTCTTCATCTTGGAAAATTGGACTTT
1 GAGTTATGAACACAACTTGCCTTTTTAACTTTCATGAAATTCTTCATCTTGAAAAATTGGACTTT
*
8297106 CATGTATCTCTCTTTGGCGAATACCTTTTCATTTTCAGTTGTACACTTCCATACTTATACGCCTC
66 CATGTATCTCTCTTTGGCGAATACCTTTCCATTTTCAGTTGTACACTTCCATACTTATACGCCTC
8297171 TCATCATGCATACTATATATTCATTCATCCAACTATTTGGC
131 TCATCATGCATACTATATATTCATTCATCCAACTATTTGGC
*
8297212 GAGTTATGAACACAACTTGCCTTTTTAACTTTCATGAAATTCTTTATCTTGAAAAATTGGACTTT
1 GAGTTATGAACACAACTTGCCTTTTTAACTTTCATGAAATTCTTCATCTTGAAAAATTGGACTTT
* * * *
8297277 CATGTATCTCTCTTTGGCGAATACCTTTCCATTTTCAGTTTTATATTTTCATACTTATACGCCTC
66 CATGTATCTCTCTTTGGCGAATACCTTTCCATTTTCAGTTGTACACTTCCATACTTATACGCCTC
*
8297342 TCATCATGCATGCTATATATTCATTCATCCAACTATTTGGC
131 TCATCATGCATACTATATATTCATTCATCCAACTATTTGGC
8297383 TAGCTCTAGG
Statistics
Matches: 163, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
171 163 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.42
Consensus pattern (171 bp):
GAGTTATGAACACAACTTGCCTTTTTAACTTTCATGAAATTCTTCATCTTGAAAAATTGGACTTT
CATGTATCTCTCTTTGGCGAATACCTTTCCATTTTCAGTTGTACACTTCCATACTTATACGCCTC
TCATCATGCATACTATATATTCATTCATCCAACTATTTGGC
Found at i:8301590 original size:43 final size:43
Alignment explanation
Indices: 8301529--8301704 Score: 221
Period size: 43 Copynumber: 4.1 Consensus size: 43
8301519 GCGTCGTTAA
* *
8301529 CTTTAGCGACGCTTTTCCCATAAACGCCGCTAAAGACCATAAC
1 CTTTAGCGGCGCTTTTCCCATAAACGCCGCTAAAGAACATAAC
* *
8301572 CTTTAGCGGCGCTTTTCCCATAAACGCCGCTAAAGATCATGAC
1 CTTTAGCGGCGCTTTTCCCATAAACGCCGCTAAAGAACATAAC
** *
8301615 CTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGAACA-AAC
1 CTTTAGCGGCGCTTTTCCCATAAACGCCGCTAAAGAACATAAC
* * * * *
8301657 CTTTAGCGGCGATTCTCGCAAAAAATGCCGCTAAA-AACATAAC
1 CTTTAGCGGCGCTTTTC-CCATAAACGCCGCTAAAGAACATAAC
8301700 CTTTA
1 CTTTA
8301705 AACAAATTAT
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
42 20 0.17
43 96 0.83
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCATAAACGCCGCTAAAGAACATAAC
Found at i:8304176 original size:42 final size:42
Alignment explanation
Indices: 8304073--8304213 Score: 183
Period size: 43 Copynumber: 3.3 Consensus size: 42
8304063 ATTTTTAGAA
* * *
8304073 ACAAACGCCGCTATAGAACAAGACCTTTAGCGGCGCTTCTCCC
1 ACAAACGCCGCTATAGATCATGACTTTTAGCGGCGCTT-TCCC
* * *
8304116 ACAAACGCTGCTAAAGATCATGACTTTTAGCGGTGCTTTCCC
1 ACAAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTCCC
* * *
8304158 ACAAACGTCGCTATAGATCATCACTTTTAGCGACGCTTTTCCC
1 ACAAACGCCGCTATAGATCATGACTTTTAGCGGCGC-TTTCCC
8304201 ACAAACGCCGCTA
1 ACAAACGCCGCTA
8304214 AAAATATATC
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 34 0.40
43 50 0.60
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (42 bp):
ACAAACGCCGCTATAGATCATGACTTTTAGCGGCGCTTTCCC
Found at i:8304548 original size:43 final size:43
Alignment explanation
Indices: 8304482--8304568 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
8304472 ACATATGCAA
* * *
8304482 GGTAATAAAACATAAAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAACATAAAATACATTTACTTAATCAAGGAAATCTT
* *
8304525 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAACATAAAATACATTTACTTAATCAAGGAAATCTT
8304568 G
1 G
8304569 TACATCATTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.33
Consensus pattern (43 bp):
GGTAATAAAACATAAAATACATTTACTTAATCAAGGAAATCTT
Found at i:8309229 original size:21 final size:21
Alignment explanation
Indices: 8309203--8309286 Score: 75
Period size: 21 Copynumber: 4.0 Consensus size: 21
8309193 ATCTAACTCT
8309203 TAACCCTTAACCCTTAAATCC
1 TAACCCTTAACCCTTAAATCC
*
8309224 TAACCCTTAGA-CATTAAATCC
1 TAACCCTTA-ACCCTTAAATCC
* * *
8309245 CAACCCTTAAACCAT-AATCCC
1 TAACCCTTAACCCTTAAAT-CC
*
8309266 TAATCCTTAATCCC-TAAATCC
1 TAACCCTTAA-CCCTTAAATCC
8309287 ATATATAATT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
20 4 0.08
21 41 0.80
22 6 0.12
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.27
Consensus pattern (21 bp):
TAACCCTTAACCCTTAAATCC
Found at i:8309372 original size:21 final size:18
Alignment explanation
Indices: 8309330--8309386 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 18
8309320 CAAAACACGC
*
8309330 AAAAAACTGAACTGGATA
1 AAAAAACTGAACCGGATA
8309348 AAAAAACTGAACCGAGCACTA
1 AAAAAACTGAACCG-G-A-TA
*
8309369 AAAATACTGAACCAGGAT
1 AAAAAACTGAACC-GGAT
8309387 GGGATAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
18 13 0.39
19 2 0.06
20 2 0.06
21 15 0.45
22 1 0.03
ACGTcount: A:0.53, C:0.18, G:0.16, T:0.14
Consensus pattern (18 bp):
AAAAAACTGAACCGGATA
Found at i:8309734 original size:13 final size:13
Alignment explanation
Indices: 8309716--8309742 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8309706 CCAAAAACCC
8309716 TATACTCTAACGA
1 TATACTCTAACGA
8309729 TATACTCTAACGA
1 TATACTCTAACGA
8309742 T
1 T
8309743 TATATAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (13 bp):
TATACTCTAACGA
Found at i:8309930 original size:41 final size:40
Alignment explanation
Indices: 8309865--8310081 Score: 195
Period size: 41 Copynumber: 5.3 Consensus size: 40
8309855 TAAATTATTT
* *
8309865 TAAATCCCTGAGCATTAGTGGCGCTTCTTAGAAAACGCCGC
1 TAAAGCCCTGAGCATTAGTGGCGCTTC-TAAAAAACGCCGC
* * * * *
8309906 TAAAGTCTTGAGCATTCGTGGCGCTT-TAACAAAAATGCTGC
1 TAAAGCCCTGAGCATTAGTGGCGCTTCT-A-AAAAACGCCGC
* *
8309947 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGTGGCGC-TTCTAAAAAACGCCGC
* * **
8309988 TACAGCCCTAAGCATTAGCAGCGCTT-TACCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGTGGCGCTTCTA--AAAAACGCCGC
* * **
8310029 TAAAGCCCTGAGCATTAGCGGCTCTTTCCCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGTGGCGC-TTCTAAAAAACGCCGC
*
8310070 TAAATCCCTGAG
1 TAAAGCCCTGAG
8310082 TCTTTTACTT
Statistics
Matches: 143, Mismatches: 25, Indels: 16
0.78 0.14 0.09
Matches are distributed among these distances:
39 2 0.01
40 3 0.02
41 133 0.93
42 4 0.03
43 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
TAAAGCCCTGAGCATTAGTGGCGCTTCTAAAAAACGCCGC
Found at i:8310012 original size:82 final size:82
Alignment explanation
Indices: 8309865--8310078 Score: 268
Period size: 82 Copynumber: 2.6 Consensus size: 82
8309855 TAAATTATTT
* * * * * * * **
8309865 TAAATCCCTGAGCATTAGTGGCGC-TTCTTAGAAAACGCCGCTAAAGTCTTGAGCATTCGTGGCG
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCA-AAAACGCCGCTAAAGCCCTAAGCATTAGCAGCG
* *
8309929 CTTTAACAAAAATGCTGC
65 CTTTAACAAAAACGCCGC
*
8309947 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTACAGCCCTAAGCATTAGCAGCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCAGCGC
*
8310012 TTTACCAAAAACGCCGC
66 TTTAACAAAAACGCCGC
* * *
8310029 TAAAGCCCTGAGCATTAGCGGCTCTTTCCCAAAAACGCCGCTAAATCCCT
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCT
8310079 GAGTCTTTTA
Statistics
Matches: 114, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
82 109 0.96
83 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (82 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCAGCGC
TTTAACAAAAACGCCGC
Done.