Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 30 of 214
Found at i:8310137 original size:12 final size:12
Alignment explanation
Indices: 8310120--8310147 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8310110 TTTTTTATCC
8310120 AAACGCCGCTAA
1 AAACGCCGCTAA
8310132 AAACGCCGCTAA
1 AAACGCCGCTAA
8310144 AAAC
1 AAAC
8310148 CTGTGTAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.32, G:0.14, T:0.07
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:8312065 original size:20 final size:20
Alignment explanation
Indices: 8312040--8312102 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
8312030 AAAATAAAAG
8312040 TTTAAAATATTTTTAAAATT
1 TTTAAAATATTTTTAAAATT
**
8312060 TTTAAAA-AAATTTAAAATCT
1 TTTAAAATATTTTTAAAAT-T
8312080 TTTAAAAT-TCATTTTAAAATT
1 TTTAAAATAT--TTTTAAAATT
8312101 TT
1 TT
8312103 AAATCACGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
19 9 0.26
20 15 0.43
21 3 0.09
22 8 0.23
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTAAAATATTTTTAAAATT
Found at i:8312087 original size:10 final size:10
Alignment explanation
Indices: 8312040--8312099 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
8312030 AAAATAAAAG
*
8312040 TTTAAAATATT
1 TTTAAAAT-CT
8312051 TTTAAAAT-T
1 TTTAAAATCT
***
8312060 TTTAAAAAAA
1 TTTAAAATCT
8312070 TTTAAAATCT
1 TTTAAAATCT
8312080 TTTAAAATTCAT
1 TTTAAAA-TC-T
8312092 TTTAAAAT
1 TTTAAAAT
8312100 TTTAAATCAC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
9 8 0.20
10 14 0.34
11 11 0.27
12 8 0.20
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (10 bp):
TTTAAAATCT
Found at i:8312104 original size:30 final size:30
Alignment explanation
Indices: 8312033--8312105 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
8312023 TATTATAAAA
* *
8312033 ATAAAAGTTTAAAATATTTTTAAAATTTTT
1 ATAAAAATTTAAAATACTTTTAAAATTTTT
*
8312063 AAAAAAATTTAAAAT-CTTTTAAAATTCATTT
1 ATAAAAATTTAAAATACTTTTAAAATT--TTT
*
8312094 -TAAAATTTTAAA
1 ATAAAAATTTAAA
8312106 TCACGAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 10 0.28
30 23 0.64
31 3 0.08
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (30 bp):
ATAAAAATTTAAAATACTTTTAAAATTTTT
Found at i:8312547 original size:7 final size:7
Alignment explanation
Indices: 8312498--8312553 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
8312488 CACTAAAATG
*
8312498 TAAACTC
1 TAAACCC
*
8312505 TAAACCT
1 TAAACCC
8312512 TAAACCC
1 TAAACCC
* *
8312519 CAATCCC
1 TAAACCC
* *
8312526 CAAGCCC
1 TAAACCC
8312533 TAAA-CC
1 TAAACCC
8312539 TAAACCC
1 TAAACCC
8312546 TAAACCC
1 TAAACCC
8312553 T
1 T
8312554 GAACTCAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
6 6 0.15
7 34 0.85
ACGTcount: A:0.39, C:0.41, G:0.02, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:8313677 original size:41 final size:41
Alignment explanation
Indices: 8313617--8313935 Score: 496
Period size: 41 Copynumber: 7.8 Consensus size: 41
8313607 AGATTTTATT
* * ***
8313617 ATTAGTGGCGCTTTTTCAAAAACGCCGCTAAAGGTACGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
8313658 ATTAGCGGCGCTTTCTC-AAAACGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
8313698 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
* *
8313739 ATTAGAGGCGCTTTCTCAAAAACGCTGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
* **
8313780 ATTAGCGGTGCTTTCTCAAAAACTACGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
* * *
8313821 ATTAGCGACGTTTTCTCAAAAAACGCCGCTAAAGCCCTGAGC
1 ATTAGCGGCGCTTTCTC-AAAAACGCCGCTAAAGCCCCGAGC
*
8313863 ATTAGCGACGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
8313904 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
8313936 ACCCTATTTT
Statistics
Matches: 255, Mismatches: 21, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
40 37 0.15
41 181 0.71
42 37 0.15
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (41 bp):
ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
Found at i:8315321 original size:30 final size:31
Alignment explanation
Indices: 8315285--8315367 Score: 143
Period size: 30 Copynumber: 2.7 Consensus size: 31
8315275 TAACTTGGTG
8315285 TAATTTTAGCTTGTGTGAGCAACCCTAG-TA
1 TAATTTTAGCTTGTGTGAGCAACCCTAGATA
*
8315315 TAATTTTAGCTTGTGTGAGCAA-CCTTGATA
1 TAATTTTAGCTTGTGTGAGCAACCCTAGATA
8315345 TAATTTTAGCTTGTGTGAGCAAC
1 TAATTTTAGCTTGTGTGAGCAAC
8315368 TTAGCCACCT
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
29 4 0.08
30 46 0.92
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (31 bp):
TAATTTTAGCTTGTGTGAGCAACCCTAGATA
Found at i:8316382 original size:95 final size:95
Alignment explanation
Indices: 8316219--8316403 Score: 316
Period size: 95 Copynumber: 1.9 Consensus size: 95
8316209 AATTGAACAA
* * * *
8316219 GCTTGAATGATGAATGACTGAATTGTATGATATTGAATGGTTGGTTTAGATGGTTATATGCTTGA
1 GCTTGAATGATGAATGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGTTATATACTTGA
*
8316284 ATTGGTTGATATTGGCATTGTATAAAGCAT
66 ATTGGTTGATATTGGCATGGTATAAAGCAT
*
8316314 GCTTGGATGATGAATGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGTTATATACTTGA
1 GCTTGAATGATGAATGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGTTATATACTTGA
8316379 ATTGGTTGATATTGGCATGGTATAA
66 ATTGGTTGATATTGGCATGGTATAA
8316404 TAACATATGG
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 84 1.00
ACGTcount: A:0.30, C:0.05, G:0.26, T:0.39
Consensus pattern (95 bp):
GCTTGAATGATGAATGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGTTATATACTTGA
ATTGGTTGATATTGGCATGGTATAAAGCAT
Found at i:8321658 original size:27 final size:27
Alignment explanation
Indices: 8321628--8321682 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
8321618 AAGCAGAAGT
8321628 TAGTTCGAGTTGCTCTTGCAACGAATG
1 TAGTTCGAGTTGCTCTTGCAACGAATG
8321655 TAGTTCGAGTTGCTCTTGCAACGAATG
1 TAGTTCGAGTTGCTCTTGCAACGAATG
8321682 T
1 T
8321683 GGTGTTTCGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (27 bp):
TAGTTCGAGTTGCTCTTGCAACGAATG
Found at i:8327692 original size:18 final size:19
Alignment explanation
Indices: 8327649--8327692 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
8327639 TATATTATTT
*
8327649 AATTTTCTTTAAATGCGTA
1 AATTTTTTTTAAATGCGTA
* *
8327668 TATTTTTTTTATATGC-TA
1 AATTTTTTTTAAATGCGTA
8327686 AATTTTT
1 AATTTTT
8327693 GCACATGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.59
Consensus pattern (19 bp):
AATTTTTTTTAAATGCGTA
Found at i:8327886 original size:18 final size:18
Alignment explanation
Indices: 8327865--8327923 Score: 100
Period size: 18 Copynumber: 3.3 Consensus size: 18
8327855 TCAATTCGGT
8327865 TAATTCGGTTAATTTGGG
1 TAATTCGGTTAATTTGGG
*
8327883 TAATTCGGTTAATTAGGG
1 TAATTCGGTTAATTTGGG
*
8327901 TAATTCGGTTAATTTGGT
1 TAATTCGGTTAATTTGGG
8327919 TAATT
1 TAATT
8327924 TTTAACCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.25, C:0.05, G:0.24, T:0.46
Consensus pattern (18 bp):
TAATTCGGTTAATTTGGG
Found at i:8327924 original size:9 final size:9
Alignment explanation
Indices: 8327857--8327923 Score: 89
Period size: 9 Copynumber: 7.4 Consensus size: 9
8327847 GTAGTGATTC
8327857 AATTCGGTT
1 AATTCGGTT
8327866 AATTCGGTT
1 AATTCGGTT
* *
8327875 AATTTGGGT
1 AATTCGGTT
8327884 AATTCGGTT
1 AATTCGGTT
* *
8327893 AATTAGGGT
1 AATTCGGTT
8327902 AATTCGGTT
1 AATTCGGTT
*
8327911 AATTTGGTT
1 AATTCGGTT
8327920 AATT
1 AATT
8327924 TTTAACCAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 49 1.00
ACGTcount: A:0.25, C:0.06, G:0.24, T:0.45
Consensus pattern (9 bp):
AATTCGGTT
Found at i:8330686 original size:42 final size:43
Alignment explanation
Indices: 8330587--8330691 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 43
8330577 GAAGCTCATG
*
8330587 AGAGCTAAACAGAAACCCATAAGGGTTGAACAAAAGCTCGTAA
1 AGAGCTAAACAGAAACCCATAAGGGTTAAACAAAAGCTCGTAA
* ** *
8330630 A-AGCTGAATGGAAACCCATAAGGGTTAAACAAAAGCTTG-AA
1 AGAGCTAAACAGAAACCCATAAGGGTTAAACAAAAGCTCGTAA
* *
8330671 AGAGTTAAACAGAAACTCATA
1 AGAGCTAAACAGAAACCCATA
8330692 TAAGTTAAAC
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
41 3 0.06
42 47 0.92
43 1 0.02
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.16
Consensus pattern (43 bp):
AGAGCTAAACAGAAACCCATAAGGGTTAAACAAAAGCTCGTAA
Found at i:8338814 original size:51 final size:50
Alignment explanation
Indices: 8338738--8338930 Score: 217
Period size: 51 Copynumber: 3.8 Consensus size: 50
8338728 TGAGAACTCG
* * * * ***
8338738 TGTGTAGTACTATGTGTATGCTACTATGAGTATAAGATAGTTATGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGTT-TGGTCACA
8338789 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGCTTTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAG-TTTGGTCACA
* * * * *
8338840 TGTGTAGTACTATA-TGCTGGCTATTACGTGTACCGGATGGTGTTGATCACA
1 TGTGTAGTACTA-AGTGCAGGCTACTATGTGTACCGGATAGT-TTGGTCACA
* *
8338891 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGAATAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAG
8338931 CATTGATCAT
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
50 2 0.02
51 115 0.96
52 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.34
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGTTTGGTCACA
Found at i:8344500 original size:46 final size:46
Alignment explanation
Indices: 8344426--8344706 Score: 318
Period size: 46 Copynumber: 6.6 Consensus size: 46
8344416 TACGTATGAT
* *
8344426 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
8344470 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
8344516 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
8344562 CACTTATCACTTTGTCTCTTGATCAGAT-A-CGT-G-T--AG-T--
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
8344599 -ACTTATCACTTTGTCACTTGATCAAATAA--GT-G-T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
8344634 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAACTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
** *
8344680 CACTTATCACTTTACCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8344707 AGTACTCAAA
Statistics
Matches: 210, Mismatches: 13, Indels: 26
0.84 0.05 0.10
Matches are distributed among these distances:
36 59 0.28
37 1 0.00
38 2 0.01
39 1 0.00
40 3 0.01
42 3 0.01
43 1 0.00
44 12 0.06
45 6 0.03
46 122 0.58
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:8344604 original size:36 final size:36
Alignment explanation
Indices: 8344562--8344668 Score: 178
Period size: 36 Copynumber: 3.0 Consensus size: 36
8344552 CTAAAGCTAC
* *
8344562 CACTTATCACTTTGTCTCTTGATCAGATACGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
* *
8344598 TACTTATCACTTTGTCACTTGATCAAATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
8344634 CACTTATCACTTTGTCACTTGATCAGATAAGTGTA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTA
8344669 ACTAAAGCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 65 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
Found at i:8354870 original size:229 final size:228
Alignment explanation
Indices: 8354463--8354928 Score: 628
Period size: 229 Copynumber: 2.0 Consensus size: 228
8354453 GTACTACTTT
*
8354463 AGTGTATTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTACCAT
1 AGTGTGTTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTA-CAT
* ** * ** * *
8354528 ATTTTTTGTAAAATGCATTGCATTCATGCTAATTACTGTTTTGATTTTTTTTTGTTGCATGGTAA
65 ATTTTTTGTAAAATGCATTGCACTCATGCTAATTACCATTTAGATCGTCTTTTGTTGCATAGTAA
* * *
8354593 AATGGCCCATCAAAATTATAACCATTGCTTTTCTATTTAAGTTGACGTGATGTTACACTTGCATG
130 AACGGCCCATCAAAATTATAACCATTGCTTTTCTATTTAAGTTGACGTGATGTCACACTTGCAGG
* * * *
8354658 GCTGCCTAAATGACACCATCTTAGTACTGGCTGG
195 GCAGCCTAAAAGACACCATCTTACTACAGGCTGG
* * * * *
8354692 AGTGTGTTAATTTTCCTCAACTGGTTGTTTTGTGTTTTTTAGTTGAGGGAACCCTAGTTGTA-TT
1 AGTGTGTTAATTTTCCTCAACTGGTCGTTTTCTG-CTTGTAGTTGAGGGAACCCTAGTTGTACAT
* * * *
8354756 GTCTTTTTGTGAACTGCATTGCACTCATGTTAATTACCATTTAGATCGTCTTTTGTTGCATAGTA
65 AT-TTTTTGTAAAATGCATTGCACTCATGCTAATTACCATTTAGATCGTCTTTTGTTGCATAGTA
* ** *
8354821 ATACGGCCCATCAAAATTATAACTGTTGTTTTTCTATTTAAGTTGACGTGATGTCACACTTGCAG
129 AAACGGCCCATCAAAATTATAACCATTGCTTTTCTATTTAAGTTGACGTGATGTCACACTTGCAG
*
8354886 GGCAGCCTAAAAGACACCTTCTTACTACAGGCTGG
194 GGCAGCCTAAAAGACACCATCTTACTACAGGCTGG
8354921 AGTGTGTT
1 AGTGTGTT
8354929 TGTTAGTGCC
Statistics
Matches: 205, Mismatches: 30, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
228 2 0.01
229 178 0.87
230 25 0.12
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (228 bp):
AGTGTGTTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTACATA
TTTTTTGTAAAATGCATTGCACTCATGCTAATTACCATTTAGATCGTCTTTTGTTGCATAGTAAA
ACGGCCCATCAAAATTATAACCATTGCTTTTCTATTTAAGTTGACGTGATGTCACACTTGCAGGG
CAGCCTAAAAGACACCATCTTACTACAGGCTGG
Found at i:8356168 original size:387 final size:387
Alignment explanation
Indices: 8355454--8356229 Score: 1410
Period size: 387 Copynumber: 2.0 Consensus size: 387
8355444 CACGTGTTTC
8355454 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
1 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
8355519 CTTAGCGGTTTATTAAGTATTTCTTTGGTGGTTTATCTCGTGTGATTATTAGCATTTGTTTATAT
66 CTTAGCGGTTTATTAAGTATTTCTTTGGTGGTTTATCTCGTGTGATTATTAGCATTTGTTTATAT
*
8355584 AATCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTTTGACTCGCTTG
131 AATCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTG
8355649 TGAGCTCATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGAATTTGTCCAAAAGTAAG
196 TGAGCTCATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGAATTTGTCCAAAAGTAAG
* *
8355714 AATATGTTTTGACATATCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATTTGAGAGCTTAG
261 AATATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAG
8355779 ATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
326 ATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
8355841 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
1 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
* * *
8355906 CTTAGTGGTTCT-TTAAGTATTTCTTTGGTGGTTTATCTTGTGTGATTATTAGCATTTGTTTATC
66 CTTAGCGGTT-TATTAAGTATTTCTTTGGTGGTTTATCTCGTGTGATTATTAGCATTTGTTTATA
*
8355970 TAATCATGTTCTTGAAAGCCATCTATGTTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTT
130 TAATCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTT
* * * *
8356035 GTGATCTTATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGTATTTGTCCAGAAGTAA
195 GTGAGCTCATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGAATTTGTCCAAAAGTAA
*
8356100 GAATATTTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTA
260 GAATATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTA
* *
8356165 GATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACGTACACAATTAAAAGTATAAT
325 GATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
8356228 AG
1 AG
8356230 CTGCTTTACT
Statistics
Matches: 374, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
387 373 1.00
388 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (387 bp):
AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
CTTAGCGGTTTATTAAGTATTTCTTTGGTGGTTTATCTCGTGTGATTATTAGCATTTGTTTATAT
AATCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTG
TGAGCTCATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGAATTTGTCCAAAAGTAAG
AATATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAG
ATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
Found at i:8369010 original size:52 final size:50
Alignment explanation
Indices: 8368949--8369052 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 50
8368939 TGAAGAACTT
* *
8368949 AACCGGATTTTAAATGCACTGTAATCCGTTCTATATGAGATATTCTTATGAA
1 AACCGGATTTTAAATGCACTGTAATCCATTATATATGAG--ATTCTTATGAA
* *
8369001 AACCGGATTTTAATTGCATTGTAATCCATTATATATGAGATTCTTATGAA
1 AACCGGATTTTAAATGCACTGTAATCCATTATATATGAGATTCTTATGAA
8369051 AA
1 AA
8369053 AGGGCATACT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
50 13 0.27
52 35 0.73
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (50 bp):
AACCGGATTTTAAATGCACTGTAATCCATTATATATGAGATTCTTATGAA
Found at i:8382942 original size:44 final size:44
Alignment explanation
Indices: 8382879--8383078 Score: 210
Period size: 44 Copynumber: 4.6 Consensus size: 44
8382869 TACCATAGCG
* * * * *
8382879 AATCTTATTTCCCTGAAGTTACAGTAGAGCAGATTGAAGCTTCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* * *
8382923 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG---CG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* *
8382964 AATCTTACCTCTCTGATA-TTGCAGTGGAGCAGATTAAAGCTACA
1 AATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTAAAGCTACA
** * *
8383008 AATCTTATCTCTTTGAAGTTGCAGTGGAGCAAATTAAAGGTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
* **
8383052 AATCTTATCTCTCAAAAGTTGCAGTGG
1 AATCTTATCTCCCTGAAGTTGCAGTGG
8383079 GGCAAGATGA
Statistics
Matches: 134, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
41 34 0.25
42 1 0.01
43 1 0.01
44 98 0.73
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA
Found at i:8391171 original size:11 final size:11
Alignment explanation
Indices: 8391157--8391190 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
8391147 TTTTTTTACC
8391157 GTTGTTTTGTT
1 GTTGTTTTGTT
8391168 GTTGTTTTGTT
1 GTTGTTTTGTT
*
8391179 ATTG-TTTGTT
1 GTTGTTTTGTT
8391189 GT
1 GT
8391191 CATTTTGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.03, C:0.00, G:0.26, T:0.71
Consensus pattern (11 bp):
GTTGTTTTGTT
Found at i:8391188 original size:21 final size:21
Alignment explanation
Indices: 8391162--8391202 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8391152 TTACCGTTGT
**
8391162 TTTGTTGTTGTTTTGTTATTG
1 TTTGTTGTCATTTTGTTATTG
8391183 TTTGTTGTCATTTTGTTATT
1 TTTGTTGTCATTTTGTTATT
8391203 ATATTGTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.07, C:0.02, G:0.20, T:0.71
Consensus pattern (21 bp):
TTTGTTGTCATTTTGTTATTG
Found at i:8391726 original size:3 final size:3
Alignment explanation
Indices: 8391718--8391742 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8391708 GCAGCTGAAC
8391718 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
8391743 TAAGTACTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8391879 original size:2 final size:2
Alignment explanation
Indices: 8391872--8391924 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
8391862 GCTATTGGGA
8391872 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8391914 CT CT CT CT CT C
1 CT CT CT CT CT C
8391925 ATTTGTGTGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:8397882 original size:31 final size:31
Alignment explanation
Indices: 8397844--8397904 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
8397834 GGCCCATTTT
8397844 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAG
1 TATTTTAAAAATATTT-AAAAATTAAAAAAAG
*
8397875 TATTTTAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTAAAAATTAAAAAAA
8397905 TTTAAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (31 bp):
TATTTTAAAAATATTTAAAAATTAAAAAAAG
Found at i:8397884 original size:11 final size:11
Alignment explanation
Indices: 8397844--8397895 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 11
8397834 GGCCCATTTT
8397844 TATTTT-AAAA
1 TATTTTAAAAA
8397854 -ATTTTAAAAA
1 TATTTTAAAAA
**
8397864 -ATTAAAAAAA
1 TATTTTAAAAA
8397874 GTATTTTAAAAA
1 -TATTTTAAAAA
8397886 TATTTTAAAA
1 TATTTTAAAA
8397896 TTAAAAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 5 0.14
10 12 0.34
11 10 0.29
12 8 0.23
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:8397890 original size:42 final size:43
Alignment explanation
Indices: 8397844--8397945 Score: 131
Period size: 42 Copynumber: 2.4 Consensus size: 43
8397834 GGCCCATTTT
* * *
8397844 TATTTTAAAAATTTTAAAAAA-TT-AAAAAAAGTATTTTAAAAA
1 TATTTTAAAAA-TTAAAAAAATTTAAAAAAAAGTATGTAAAAAA
8397886 TATTTT-AAAATTAAAAAAATTTAAAAAAAAGTATGTAAAAAA
1 TATTTTAAAAATTAAAAAAATTTAAAAAAAAGTATGTAAAAAA
*
8397928 TATTTT-AAAGTTAAAAAA
1 TATTTTAAAAATTAAAAAA
8397946 TAAATATATT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 8 0.15
41 6 0.11
42 40 0.74
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (43 bp):
TATTTTAAAAATTAAAAAAATTTAAAAAAAAGTATGTAAAAAA
Found at i:8397912 original size:17 final size:17
Alignment explanation
Indices: 8397879--8397912 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8397869 AAAAAGTATT
* *
8397879 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTAAAAA
8397896 TTAAAAAAATTTAAAAA
1 TTAAAAAAATTTAAAAA
8397913 AAAGTATGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAAAATTTAAAAA
Found at i:8402248 original size:18 final size:18
Alignment explanation
Indices: 8402212--8402259 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
8402202 TAGACTGAAG
*
8402212 AAAAAGAAGAAAATTAAAA
1 AAAAAGAAGAAAA-GAAAA
8402231 AAAAA-AAGAAAAGAAAA
1 AAAAAGAAGAAAAGAAAA
*
8402248 AGAAAGAAGAAA
1 AAAAAGAAGAAA
8402260 CACAATCAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 8 0.31
18 13 0.50
19 5 0.19
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAAGAAGAAAAGAAAA
Found at i:8402409 original size:2 final size:2
Alignment explanation
Indices: 8402402--8402452 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
8402392 CAGCGCTCCT
8402402 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8402444 TC TC TC TC T
1 TC TC TC TC T
8402453 GTTCACTTAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8403561 original size:57 final size:57
Alignment explanation
Indices: 8403468--8403590 Score: 228
Period size: 57 Copynumber: 2.2 Consensus size: 57
8403458 TATTAGATTG
* *
8403468 AAGGATGACCGAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
1 AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
8403525 AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
1 AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
8403582 AAGGCTGAC
1 AAGGCTGAC
8403591 GAGTCTGAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 64 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (57 bp):
AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
Found at i:8404823 original size:19 final size:19
Alignment explanation
Indices: 8404784--8404824 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8404774 TTTTTAGTTA
* **
8404784 TTTTATATATTTATACTTT
1 TTTTATAAATTTATAAATT
8404803 TTTTATAAATTTATAAATT
1 TTTTATAAATTTATAAATT
8404822 TTT
1 TTT
8404825 AGTCCTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTATAAATTTATAAATT
Found at i:8407665 original size:22 final size:23
Alignment explanation
Indices: 8407632--8407690 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
8407622 AGAATGATAC
* *
8407632 ATGA-AAACTTAAAATAAT-TAT
1 ATGATAAATTTAAAACAATATAT
8407653 ATGATAAATTTAAAACAATAATAT
1 ATGATAAATTTAAAACAAT-ATAT
*
8407677 GTGATAAATTTAAA
1 ATGATAAATTTAAA
8407691 CAACATTCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.12
22 12 0.38
24 16 0.50
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.34
Consensus pattern (23 bp):
ATGATAAATTTAAAACAATATAT
Found at i:8407686 original size:24 final size:25
Alignment explanation
Indices: 8407644--8407690 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
8407634 GAAAACTTAA
8407644 AATAATTATATGATAAATTTAAAAC
1 AATAATTATATGATAAATTTAAAAC
*
8407669 AATAA-TATGTGATAAATTTAAA
1 AATAATTATATGATAAATTTAAA
8407691 CAACATTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.36
Consensus pattern (25 bp):
AATAATTATATGATAAATTTAAAAC
Found at i:8411400 original size:28 final size:28
Alignment explanation
Indices: 8411369--8411429 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 28
8411359 AAAAGCCCTT
8411369 TTTTTTAA-AATTTACCGAAATGGGCCGA
1 TTTTTTAATAATTTACCGAAATGGGCC-A
* * *
8411397 TTTTTTAATTATTTACCGGAATGGTCCA
1 TTTTTTAATAATTTACCGAAATGGGCCA
8411425 TTTTT
1 TTTTT
8411430 CAGGAAATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 14 0.48
29 15 0.52
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (28 bp):
TTTTTTAATAATTTACCGAAATGGGCCA
Found at i:8411822 original size:126 final size:126
Alignment explanation
Indices: 8411592--8411945 Score: 586
Period size: 126 Copynumber: 2.8 Consensus size: 126
8411582 TTATTTCCAA
8411592 TTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
8411656 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT-
65 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTG
* * * *
8411717 TCTGATGTTTCTGAGCAAATAGTATAAAATCGTTTCTACGAGAATGCTATTTGAGAAGAAATTGT
1 T-TGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
* * * *
8411782 GAAATCACACCCTCGTGGACACGATTTTTCTACAGTAGGTCATGTAAGAAATAATTTTTTTG
65 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTG
* *
8411844 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTAATTGAGAAAAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
8411909 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
8411946 CAAGTTTGGG
Statistics
Matches: 208, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
125 1 0.00
126 205 0.99
127 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (126 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTG
Found at i:8415075 original size:10 final size:10
Alignment explanation
Indices: 8415060--8415084 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8415050 CAAATCTAAC
8415060 ATTATGTAAA
1 ATTATGTAAA
8415070 ATTATGTAAA
1 ATTATGTAAA
8415080 ATTAT
1 ATTAT
8415085 TAAGCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:8415164 original size:56 final size:56
Alignment explanation
Indices: 8415076--8415350 Score: 405
Period size: 56 Copynumber: 4.9 Consensus size: 56
8415066 TAAAATTATG
8415076 TAAAATTATTAAG-CCAAAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
1 TAAAATTATTAAGTCC--AAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
* * **
8415133 TAAAATTATTAAGTCCAGAAATTATGTTAATGGTTAGTAAAA-TTATCAAA-ATATG
1 TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATA-AAC
* * *
8415188 TAATATTATTAAG-CCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAAC
1 TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
* *
8415243 TAAAATTATTAAGTCCAGAAATTGTGTTAATGGTTAGTAAAATTTATGAAATAAAC
1 TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
*
8415299 TAAAATTATTAAGTCCAAAAATTGTGTTAATAGTTAGTAAAATTTATCAAAT
1 TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAAT
8415351 TAAGTTAGGT
Statistics
Matches: 196, Mismatches: 17, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
54 26 0.13
55 41 0.21
56 114 0.58
57 13 0.07
58 2 0.01
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.36
Consensus pattern (56 bp):
TAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
Found at i:8415271 original size:110 final size:110
Alignment explanation
Indices: 8415066--8415350 Score: 437
Period size: 110 Copynumber: 2.5 Consensus size: 110
8415056 TAACATTATG
8415066 TAAAATTATGTAAAATTATTAAGCCAAAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAA
1 TAAAA-TATGTAAAATTATTAAGCC--AAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAA
8415131 ACTAAAATTATTAAGTCCAGAAATTATGTTAATGGTTAGTAAAA-TTA
63 ACTAAAATTATTAAGTCCAGAAATTATGTTAATGGTTAGTAAAATTTA
* * *
8415178 TCAAAATATGTAATATTATTAAGCCAAAAATTGTATTAATGGTTAGTAAAATTTATGAAATAAAC
1 T-AAAATATGTAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAAC
*
8415243 TAAAATTATTAAGTCCAGAAATTGTGTTAATGGTTAGTAAAATTTA
65 TAAAATTATTAAGTCCAGAAATTATGTTAATGGTTAGTAAAATTTA
* ** *
8415289 TGAAATAAACTAAAATTATTAAGTCCAAAAATTGTGTTAATAGTTAGTAAAATTTATCAAAT
1 TAAAAT-ATGTAAAATTATTAAG-CCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAAT
8415351 TAAGTTAGGT
Statistics
Matches: 158, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
110 83 0.53
111 17 0.11
112 54 0.34
113 4 0.03
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.36
Consensus pattern (110 bp):
TAAAATATGTAAAATTATTAAGCCAAAAATTGTGTTAATGGTTAGTAAAATTTATCAAATAAACT
AAAATTATTAAGTCCAGAAATTATGTTAATGGTTAGTAAAATTTA
Found at i:8415369 original size:6 final size:6
Alignment explanation
Indices: 8415354--8415402 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
8415344 ATCAAATTAA
*
8415354 GTTA-G GTTAGG GTTAGG GTTAGG GTTTA-A GTTA-G GTTAGG GTTAGG
1 GTTAGG GTTAGG GTTAGG GTTAGG G-TTAGG GTTAGG GTTAGG GTTAGG
8415400 GTT
1 GTT
8415403 TTTCATTAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
5 11 0.28
6 25 0.64
7 3 0.08
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.39
Consensus pattern (6 bp):
GTTAGG
Found at i:8415383 original size:29 final size:29
Alignment explanation
Indices: 8415350--8416120 Score: 719
Period size: 29 Copynumber: 25.6 Consensus size: 29
8415340 ATTTATCAAA
*
8415350 TTAAGTTAGGTTAGGGTTAGGG--TTAGGG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTA-AG
*
8415378 TTTAAGTTAGGTTAGGGTTAGGGTTTTTCA-
1 -TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
8415408 TTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAG
1 TTAAGTTAGGTTAGGGTTAGGG---TT--TTAAG
* *
8415442 TTAGGTTAGGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTA-GGTTAGGGTTAGGGTTTTAAG
* * *
8415472 TTAATTTAGGTTAAGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
* *
8415501 TTAATTTAGGTTAGGGTTAGAGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAG-GGTTTTAAG
8415530 TTAAGTTAGGTTAGGGTTAAGGTTAGGGTTTTAA-
1 TTAAGTTAGGTTA--G----GGTTAGGGTTTTAAG
*
8415564 TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
*
8415593 TTATGTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
* *
8415622 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
* *
8415651 TTAATTTAGGTTAGGGTTAGGGTTAGGGTTAGGG
1 TTAAGTTAGGTTAGGGTTAGGGTT----TTA-AG
* *
8415685 TTTTTAA-TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
1 ---TTAAGTTAGGTTA-----GGGTTAGGGTTTTAAG
8415721 TTAAGTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
* * *
8415750 TTAATTTAGGTTAGGGCTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
*
8415779 TTAATTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
* *
8415808 TTAAGTTAGGTTAGGGTT--TGTAATTAAG
1 TTAAGTTAGGTTAGGGTTAGGGT-TTTAAG
* *
8415836 TTAGGTTAGGGTTAGGGTTAAGGTTTT-AG
1 TTAAGTTA-GGTTAGGGTTAGGGTTTTAAG
* *
8415865 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
8415894 TTAATTTAGGTTAGGGTTAGGGTTAGGGTTTTTAA-
1 TT-A---A-GTTA-GGTTAGGGTTAGGG-TTTTAAG
* *
8415929 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
* *
8415958 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
* *
8415987 TTAATTTAGGTTAGGGTTAGGGTTTTTAG
1 TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
*
8416016 TTAATTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
*
8416045 TTAATTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
8416074 TTAAGTTAGGTTAGGGTTAGGGTTTTTAA-
1 TTAAGTTAGGTTAGGGTTAGGG-TTTTAAG
8416103 TTAAGTTAGGTTAGGGTT
1 TTAAGTTAGGTTAGGGTT
8416121 TTCAATTAAA
Statistics
Matches: 645, Mismatches: 46, Indels: 102
0.81 0.06 0.13
Matches are distributed among these distances:
26 1 0.00
27 5 0.01
28 52 0.08
29 418 0.65
30 42 0.07
31 7 0.01
32 5 0.01
33 10 0.02
34 39 0.06
35 36 0.06
36 13 0.02
37 6 0.01
41 11 0.02
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.46
Consensus pattern (29 bp):
TTAAGTTAGGTTAGGGTTAGGGTTTTAAG
Found at i:8415445 original size:87 final size:87
Alignment explanation
Indices: 8415348--8416120 Score: 847
Period size: 87 Copynumber: 8.6 Consensus size: 87
8415338 AAATTTATCA
8415348 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTCA-TTAA
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTT-AGTTAA
*
8415412 GTTAGGTTAGGGTTAGGGTTTTT
65 TTTAGGTTAGGGTTAGGGTTTTT
* *
8415435 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTAAGGTTAGGGTTTTTA
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGG----T--TTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
8415500 GTTAATTTAGGTTAGGGTTAGAGTTTTT
60 GTTAATTTAGGTTAGGGTTAGGGTTTTT
*
8415528 AATTAAGTTAGGTTAGGGTTAAGGTTAGGGTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTTAG
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGG---T--TTAAGTTAGGTTAGGGTTAGGGTTTTTAG
8415593 TT-ATGTTAGGTTAGGGTTAGGGTTTTT
61 TTAAT-TTAGGTTAGGGTTAGGGTTTTT
* **
8415620 AATTAATTTAGGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTAGGGTTAGGGTTAGGGTTAGGG
1 AATTAAGTTAGGTTAGGGTTAGGG---TTAG--GGTTTA----A--GTTA-GGTTAGGGTTAGGG
* *
8415685 TTTTTAATTAAGTTAGGTTAGGGTTAGGGTTTTT
54 TTTTTAGTTAATTTAGGTTAGGGTTAGGGTTTTT
* ***** * *
8415719 AGTTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGCTAGGGTTTTTAGTTAAT
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAAT
8415784 TTAGGTTAGGGTTAGGGTTTTT
66 TTAGGTTAGGGTTAGGGTTTTT
* ** * * *
8415806 AATTAAGTTAGGTTAGGGTTTGTAATTA-AG-TTAGGTTAGGGTTAGGGTTAAGG-TTTTAGTTA
1 AATTAAGTTAGGTTAGGGTTAG-GGTTAGGGTTTAAGTTA-GGTTAGGGTTAGGGTTTTTAGTTA
8415868 ATTTAGGTTAGGGTTAGGGTTTTT
64 ATTTAGGTTAGGGTTAGGGTTTTT
* * *
8415892 AGTTAATTTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGGGTTTTTA
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGG----T--TTAAGTTAGGTTAGGGTTAGGGTTTTTA
8415957 GTTAATTTAGGTTAGGGTTAGGGTTTTT
60 GTTAATTTAGGTTAGGGTTAGGGTTTTT
* * *** * *
8415985 AGTTAATTTAGGTTAGGGTTAGGGTTTTTAG-TTAATTTAGGTTAGGGTTAGGGTTTTTAATTAA
1 AATTAAGTTAGGTTAGGGTTAGGG-TTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAA
8416049 TTTAGGTTAGGGTTAGGGTTTTT
65 TTTAGGTTAGGGTTAGGGTTTTT
*****
8416072 AATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTT
1 AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTT
8416121 TTCAATTAAA
Statistics
Matches: 598, Mismatches: 54, Indels: 68
0.83 0.08 0.09
Matches are distributed among these distances:
85 3 0.01
86 63 0.11
87 201 0.34
88 5 0.01
90 1 0.00
91 3 0.01
92 94 0.16
93 142 0.24
94 8 0.01
95 4 0.01
96 3 0.01
98 4 0.01
99 66 0.11
100 1 0.00
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.45
Consensus pattern (87 bp):
AATTAAGTTAGGTTAGGGTTAGGGTTAGGGTTTAAGTTAGGTTAGGGTTAGGGTTTTTAGTTAAT
TTAGGTTAGGGTTAGGGTTTTT
Found at i:8415670 original size:6 final size:6
Alignment explanation
Indices: 8415659--8415686 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8415649 AGTTAATTTA
8415659 GGTTAG GGTTAG GGTTAG GGTTAG GGTT
1 GGTTAG GGTTAG GGTTAG GGTTAG GGTT
8415687 TTTAATTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.50, T:0.36
Consensus pattern (6 bp):
GGTTAG
Found at i:8415681 original size:41 final size:41
Alignment explanation
Indices: 8415630--8415715 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
8415620 AATTAATTTA
* *
8415630 GGTTAGGGTTAGGGTTTTTAGTTAATTTAGGTTAGGGTTAG
1 GGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAG
8415671 GGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAG
1 GGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAG
8415712 GGTT
1 GGTT
8415716 TTTAGTTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.43
Consensus pattern (41 bp):
GGTTAGGGTTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAG
Found at i:8416127 original size:23 final size:23
Alignment explanation
Indices: 8416083--8416135 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
8416073 ATTAAGTTAG
*
8416083 GTTAGGGTTAGGGTTTTTAATTAA
1 GTTA-GGTTAGGGTTTTCAATTAA
8416107 GTTAGGTTAGGGTTTTCAATTAA
1 GTTAGGTTAGGGTTTTCAATTAA
*
8416130 ATTAGG
1 GTTAGG
8416136 GTTTTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.26, C:0.02, G:0.28, T:0.43
Consensus pattern (23 bp):
GTTAGGTTAGGGTTTTCAATTAA
Found at i:8416214 original size:26 final size:25
Alignment explanation
Indices: 8416184--8416232 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
8416174 CTTCAAAAAT
8416184 TTCTATGCATATTACATCAAATAAAC
1 TTCTAT-CATATTACATCAAATAAAC
**
8416210 TTCTATTTTATTACATCAAATAA
1 TTCTATCATATTACATCAAATAA
8416233 TAAATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (25 bp):
TTCTATCATATTACATCAAATAAAC
Found at i:8417329 original size:7 final size:7
Alignment explanation
Indices: 8417319--8417343 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8417309 TTATATACAT
8417319 AATACTA
1 AATACTA
8417326 AATACTA
1 AATACTA
8417333 AATACTA
1 AATACTA
8417340 AATA
1 AATA
8417344 TCAATCAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:8417888 original size:23 final size:23
Alignment explanation
Indices: 8417858--8417910 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
8417848 TATCGGATTC
8417858 TTTGGATTTCGGTTGAATTTGCA
1 TTTGGATTTCGGTTGAATTTGCA
8417881 TTTGGATTTCGGTTGAATTTGCA
1 TTTGGATTTCGGTTGAATTTGCA
*
8417904 TTCGGAT
1 TTTGGAT
8417911 CGAGCATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.47
Consensus pattern (23 bp):
TTTGGATTTCGGTTGAATTTGCA
Found at i:8422603 original size:31 final size:31
Alignment explanation
Indices: 8422561--8423166 Score: 206
Period size: 31 Copynumber: 19.8 Consensus size: 31
8422551 ATCCAATGCT
*
8422561 CAAATC-AATTCAACAATATATATTCATATA
1 CAAATCAAATTCAACAATATATAATCATATA
* * *
8422591 CGAATCAAATTCAGCAATGTATAATCATATA
1 CAAATCAAATTCAACAATATATAATCATATA
*** * *
8422622 CAAATC-AATTTGGCAATGTATAACCATATA
1 CAAATCAAATTCAACAATATATAATCATATA
** * ** *
8422652 TGAATCAAGTTCGGCAATTTTATAATCATATA
1 CAAATCAAATTCAACAA-TATATAATCATATA
* **
8422684 CAAAT-TAATTCGGCAACT-TAT-ATCCATATA
1 CAAATCAAATTCAACAA-TATATAAT-CATATA
* * * * *
8422714 CAATTCAATTTCAACAATGTAAAACCATATA
1 CAAATCAAATTCAACAATATATAATCATATA
* * *
8422745 CAAATTAATTTCAGCAA-AGTATAATCATATA
1 CAAATCAAATTCAACAATA-TATAATCATATA
** ** *
8422776 TGAATC-AATTCGTCAACT-TATATTCATATA
1 CAAATCAAATTCAACAA-TATATAATCATATA
* * * * * *
8422806 CAAATCAATTTCGATAATGTATAACCCTATA
1 CAAATCAAATTCAACAATATATAATCATATA
** * * *
8422837 CAAAT-AAATTTCAGTAATGTACAACCATATA
1 CAAATCAAA-TTCAACAATATATAATCATATA
* * *
8422868 CGAAT-TAATTCAGCAACT-TAT-ATCCATATA
1 CAAATCAAATTCAACAA-TATATAAT-CATATA
* * * *
8422898 CAATTCAATTTCAACAATGTATAACCATATA
1 CAAATCAAATTCAACAATATATAATCATATA
* * * * *
8422929 CAAATTAATTTCAGCAATGTATAATTATATA
1 CAAATCAAATTCAACAATATATAATCATATA
* * ** **
8422960 CGAAT-TAATTCGGCAACT-TATCTTCATATA
1 CAAATCAAATTCAACAA-TATATAATCATATA
* * * * *
8422990 CAAATCAATTTCGATAATGTATAACCATATA
1 CAAATCAAATTCAACAATATATAATCATATA
* * * *
8423021 CAAAT-AAATTTCAGCAATGTACAACCATATA
1 CAAATCAAA-TTCAACAATATATAATCATATA
* * *
8423052 CGAAT-TAATTCAGCAACT-TAT-ATCCATATA
1 CAAATCAAATTCAACAA-TATATAAT-CATATA
* * * * *
8423082 CAATTCAATTTCAACAATGTATAACCATCTA
1 CAAATCAAATTCAACAATATATAATCATATA
* * * * *
8423113 CAAATTAATTTCAGCAATGTATAATTATATA
1 CAAATCAAATTCAACAATATATAATCATATA
* **
8423144 CAAAT-TAATTCGGCAATATATAA
1 CAAATCAAATTCAACAATATATAA
8423167 AACAATCAAA
Statistics
Matches: 440, Mismatches: 109, Indels: 54
0.73 0.18 0.09
Matches are distributed among these distances:
29 4 0.01
30 146 0.33
31 272 0.62
32 18 0.04
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.33
Consensus pattern (31 bp):
CAAATCAAATTCAACAATATATAATCATATA
Found at i:8422837 original size:123 final size:123
Alignment explanation
Indices: 8422561--8423136 Score: 383
Period size: 123 Copynumber: 4.7 Consensus size: 123
8422551 ATCCAATGCT
* ** * * *
8422561 CAAATCAATTCAACAA-TATATATTCATATACGAATCAAATTCAGCAATGTATAATCATATACAA
1 CAAATCAATTCGACAACT-TATAACCATATAC-AATCAATTTCAGCAATGTAAAACCATATACAA
* * * *
8422625 ATCAATTT-GGCAATGTATAACCATATATGAATCAAGTTCGGCAATTTTATAATCATATA
64 ATTAATTTCAGCAAAGTATAACCATATATGAATCAAGTTCGGCAATCTTATAATCATATA
* * * *
8422684 CAAATTAATTCGGCAACTTATATCCATATACAATTCAATTTCAACAATGTAAAACCATATACAAA
1 CAAATCAATTCGACAACTTATAACCATATACAA-TCAATTTCAGCAATGTAAAACCATATACAAA
* * *
8422749 TTAATTTCAGCAAAGTATAATCATATATGAATCAA-TTCGTCAA-CTTATATTCATATA
65 TTAATTTCAGCAAAGTATAACCATATATGAATCAAGTTCGGCAATCTTATAATCATATA
* * * * * *
8422806 CAAATCAATTTCGATAA-TGTATAACCCTATACAAATAAATTTCAGTAATGTACAACCATATACG
1 CAAATCAA-TTCGACAACT-TATAACCATATAC-AATCAATTTCAGCAATGTAAAACCATATACA
** * * * ** * *
8422870 AATTAA-TTCAGCAACTTATATCCATATA-CAATTCAATTTCAACAAT-GTATAACCATATA
63 AATTAATTTCAGCAAAGTATAACCATATATGAA-TCAAGTTCGGCAATCTTATAATCATATA
* ** * * ****
8422929 CAAATTAATTTC-AGCAA-TGTATAATTATATACGAATTAA-TTCGGCAACT-TATCTTCATATA
1 CAAATCAA-TTCGA-CAACT-TATAACCATATAC-AATCAATTTCAGCAA-TGTAAAACCATATA
* ** * * * * * *
8422990 CAAATCAATTTC-G-ATAATGTATAACCATATACAAATAAATTTCAGCAAT-GTACAACCATATA
61 CAAATTAATTTCAGCA-AA-GTATAACCATATATGAATCAAGTTCGGCAATCTTATAATCATATA
* * * * * *
8423052 CGAATTAATTC-AGCAACTTATATCCATATACAATTCAATTTCAACAATGTATAACCATCTACAA
1 CAAATCAATTCGA-CAACTTATAACCATATACAA-TCAATTTCAGCAATGTAAAACCATATACAA
*
8423116 ATTAATTTCAGCAATGTATAA
64 ATTAATTTCAGCAAAGTATAA
8423137 TTATATACAA
Statistics
Matches: 362, Mismatches: 70, Indels: 42
0.76 0.15 0.09
Matches are distributed among these distances:
121 5 0.01
122 89 0.25
123 236 0.65
124 31 0.09
125 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (123 bp):
CAAATCAATTCGACAACTTATAACCATATACAATCAATTTCAGCAATGTAAAACCATATACAAAT
TAATTTCAGCAAAGTATAACCATATATGAATCAAGTTCGGCAATCTTATAATCATATA
Found at i:8423156 original size:184 final size:184
Alignment explanation
Indices: 8422577--8423159 Score: 873
Period size: 184 Copynumber: 3.2 Consensus size: 184
8422567 AATTCAACAA
* * * **
8422577 TATATATTCATATACGAATCAAATTCAGCAA-TGTATAATCATATACAAATCAATTT-GGCAATG
1 TATA-ATT-ATATACGAAT-TAATTCGGCAACT-TATATTCATATACAAATCAATTTCGATAATG
** * * * * * * * *
8422640 TATAACCATATATGAATCAAGTTCGGCAATTTTATAATCATATACAAATTAATTCGGCAACTTAT
62 TATAACCATATACAAATAAATTTCAGCAA-TGTACAACCATATACGAATTAATTCAGCAACTTAT
* *
8422705 ATCCATATACAATTCAATTTCAACAATGTAAAACCATATACAAATTAATTTCAGCAAAG
126 ATCCATATACAATTCAATTTCAACAATGTATAACCATATACAAATTAATTTCAGCAATG
* * * *
8422764 TATAATCATATATGAATCAATTCGTCAACTTATATTCATATACAAATCAATTTCGATAATGTATA
1 TATAATTATATACGAATTAATTCGGCAACTTATATTCATATACAAATCAATTTCGATAATGTATA
* *
8422829 ACCCTATACAAATAAATTTCAGTAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCA
66 ACCATATACAAATAAATTTCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCA
8422894 TATACAATTCAATTTCAACAATGTATAACCATATACAAATTAATTTCAGCAATG
131 TATACAATTCAATTTCAACAATGTATAACCATATACAAATTAATTTCAGCAATG
*
8422948 TATAATTATATACGAATTAATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATGTATA
1 TATAATTATATACGAATTAATTCGGCAACTTATATTCATATACAAATCAATTTCGATAATGTATA
8423013 ACCATATACAAATAAATTTCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCA
66 ACCATATACAAATAAATTTCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCA
*
8423078 TATACAATTCAATTTCAACAATGTATAACCATCTACAAATTAATTTCAGCAATG
131 TATACAATTCAATTTCAACAATGTATAACCATATACAAATTAATTTCAGCAATG
*
8423132 TATAATTATATACAAATTAATTCGGCAA
1 TATAATTATATACGAATTAATTCGGCAA
8423160 TATATAAAAC
Statistics
Matches: 363, Mismatches: 31, Indels: 7
0.91 0.08 0.02
Matches are distributed among these distances:
184 320 0.88
185 37 0.10
186 2 0.01
187 4 0.01
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (184 bp):
TATAATTATATACGAATTAATTCGGCAACTTATATTCATATACAAATCAATTTCGATAATGTATA
ACCATATACAAATAAATTTCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCA
TATACAATTCAATTTCAACAATGTATAACCATATACAAATTAATTTCAGCAATG
Found at i:8423179 original size:92 final size:92
Alignment explanation
Indices: 8422561--8423159 Score: 738
Period size: 92 Copynumber: 6.5 Consensus size: 92
8422551 ATCCAATGCT
* * * * * *
8422561 CAAATCAA-TTCAACAATATATATTCATATACGAATCAAATTCAGCAA-TGTATAAT-CATATAC
1 CAAATTAATTTCAGCAATGTATAATCATATACGAAT-TAATTCGGCAACT-TAT-ATCCATATAC
* **
8422623 AAATCAATTT-GGCAATGTATAACCATATA
63 AATTCAATTTCAACAATGTATAACCATATA
** * * * * *
8422652 TGAATCAAGTTCGGCAATTTTATAATCATATACAAATTAATTCGGCAACTTATATCCATATACAA
1 CAAATTAATTTCAGCAA-TGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAA
*
8422717 TTCAATTTCAACAATGTAAAACCATATA
65 TTCAATTTCAACAATGTATAACCATATA
* * * * * *
8422745 CAAATTAATTTCAGCAAAGTATAATCATATATGAATCAATTCGTCAACTTATATTCATATACAAA
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
* * *
8422810 TCAATTTCGATAATGTATAACCCTATA
66 TCAATTTCAACAATGTATAACCATATA
* * * * *
8422837 CAAATAAATTTCAGTAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAAT
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
8422902 TCAATTTCAACAATGTATAACCATATA
66 TCAATTTCAACAATGTATAACCATATA
* * * *
8422929 CAAATTAATTTCAGCAATGTATAATTATATACGAATTAATTCGGCAACTTATCTTCATATACAAA
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
* *
8422994 TCAATTTCGATAATGTATAACCATATA
66 TCAATTTCAACAATGTATAACCATATA
* * * *
8423021 CAAATAAATTTCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAAT
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
*
8423086 TCAATTTCAACAATGTATAACCATCTA
66 TCAATTTCAACAATGTATAACCATATA
* *
8423113 CAAATTAATTTCAGCAATGTATAATTATATACAAATTAATTCGGCAA
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAA
8423160 TATATAAAAC
Statistics
Matches: 431, Mismatches: 72, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
91 8 0.02
92 378 0.88
93 45 0.10
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (92 bp):
CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
TCAATTTCAACAATGTATAACCATATA
Found at i:8429538 original size:13 final size:12
Alignment explanation
Indices: 8429507--8429540 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
8429497 AAAGAATTAC
8429507 TATAGAAATTCT
1 TATAGAAATTCT
8429519 T-TAGAAATTCTT
1 TATAGAAATTC-T
8429531 TATAGAAATT
1 TATAGAAATT
8429541 GATATCCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 9 0.45
12 3 0.15
13 8 0.40
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (12 bp):
TATAGAAATTCT
Found at i:8429981 original size:10 final size:10
Alignment explanation
Indices: 8429968--8430008 Score: 55
Period size: 10 Copynumber: 3.8 Consensus size: 10
8429958 TTTAAAAAAG
8429968 TTTTAAAATT
1 TTTTAAAATT
8429978 TTTTAAATATAT
1 TTTTAAA-AT-T
8429990 TTGTTAAAATT
1 TT-TTAAAATT
8430001 TTTTAAAA
1 TTTTAAAA
8430009 AATTCTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 13 0.46
11 5 0.18
12 5 0.18
13 5 0.18
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:8435573 original size:22 final size:24
Alignment explanation
Indices: 8435545--8435588 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
8435535 ATTTTGTTCA
8435545 ACTTTAACTT-TTAT-TCAAAAAC
1 ACTTTAACTTGTTATATCAAAAAC
*
8435567 ACTTTAATTTGTTATATCAAAA
1 ACTTTAACTTGTTATATCAAAA
8435589 CATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTGTTATATCAAAAAC
Found at i:8438970 original size:25 final size:25
Alignment explanation
Indices: 8438910--8438980 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
8438900 AATTGGATCG
*
8438910 CAAGAGCTTCCCGTTATATGGCTCA
1 CAAGAGCTTCCCGTTACATGGCTCA
* * *
8438935 CATGAGGTTCCCGTTACATGGGTCGA
1 CAAGAGCTTCCCGTTACATGGCTC-A
*
8438961 -AAGAGCTTCCTGATTACATG
1 CAAGAGCTTCCCG-TTACATG
8438981 CTCGTATGGG
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 29 0.78
26 8 0.22
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (25 bp):
CAAGAGCTTCCCGTTACATGGCTCA
Found at i:8449209 original size:30 final size:30
Alignment explanation
Indices: 8449164--8449227 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 30
8449154 GATTTTTGTC
8449164 TTTTTTTTTCTTTTTTGACAGTT-AAGTTTT
1 TTTTTTTTTCTTTTTTGACAGTTCAA-TTTT
*
8449194 TTTTTCTTTTC-TTTTTGGCAGTTCAATTTT
1 TTTTT-TTTTCTTTTTTGACAGTTCAATTTT
8449224 TTTT
1 TTTT
8449228 ATAAATCAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 24 0.77
31 7 0.23
ACGTcount: A:0.11, C:0.09, G:0.09, T:0.70
Consensus pattern (30 bp):
TTTTTTTTTCTTTTTTGACAGTTCAATTTT
Found at i:8450213 original size:18 final size:18
Alignment explanation
Indices: 8450190--8450229 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
8450180 TTAAAAATTC
*
8450190 AAAAAATAATAATAGTATA
1 AAAAAATAAAAATA-TATA
8450209 AAAAAATAAAAATATATA
1 AAAAAATAAAAATATATA
8450227 AAA
1 AAA
8450230 CTAAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
AAAAAATAAAAATATATA
Found at i:8450224 original size:16 final size:16
Alignment explanation
Indices: 8450181--8450236 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
8450171 AAAACATATT
*
8450181 TAAAAAT-TCAAAAAA
1 TAAAAATATAAAAAAA
8450196 TAATAATAGTATAAAAAAA
1 TAA-AA-A-TATAAAAAAA
* *
8450215 TAAAAATATATAAAAC
1 TAAAAATATAAAAAAA
8450231 TAAAAA
1 TAAAAA
8450237 AATCTTTCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 3 0.09
16 16 0.47
17 2 0.06
18 3 0.09
19 10 0.29
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (16 bp):
TAAAAATATAAAAAAA
Found at i:8451414 original size:33 final size:29
Alignment explanation
Indices: 8451377--8451437 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 29
8451367 TAAGGTAAGA
8451377 AAAAGAAAAGGAAAAAAATAAAGGAAAAGAGGG
1 AAAAGAAAA--AAAAAAATAAA--AAAAGAGGG
*
8451410 AAAAGAAAAATAAAAATAAAAAAAGAGG
1 AAAAGAAAAAAAAAAATAAAAAAAGAGG
8451438 TACAAATAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 8 0.30
31 10 0.37
33 9 0.33
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (29 bp):
AAAAGAAAAAAAAAAATAAAAAAAGAGGG
Found at i:8455296 original size:96 final size:97
Alignment explanation
Indices: 8455124--8455306 Score: 314
Period size: 96 Copynumber: 1.9 Consensus size: 97
8455114 TATAGAAATA
**
8455124 ATTAACAAATGGACTTAATTGGTTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
1 ATTAACAAATGGACTTAATTGAATTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
*
8455189 CAAATGGCTTAATTGATTTTTTTAATTTCTTC
66 CAAATGACTTAATTGATTTTTTTAATTTCTTC
*
8455221 ATTAACGAATGGACTTAATT-AATTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
1 ATTAACAAATGGACTTAATTGAATTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
*
8455285 CAAGTGACTTAATTGATTTTTT
66 CAAATGACTTAATTGATTTTTT
8455307 AAAAATTTCT
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
96 62 0.77
97 19 0.23
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.40
Consensus pattern (97 bp):
ATTAACAAATGGACTTAATTGAATTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
CAAATGACTTAATTGATTTTTTTAATTTCTTC
Found at i:8458691 original size:21 final size:21
Alignment explanation
Indices: 8458665--8458705 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8458655 TTTAAGAAAA
*
8458665 CTGAAAAACTATTCTAATTGC
1 CTGAAAAACTAGTCTAATTGC
8458686 CTGAAAAACTAGTCTAATTG
1 CTGAAAAACTAGTCTAATTG
8458706 TTGATAAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (21 bp):
CTGAAAAACTAGTCTAATTGC
Found at i:8461283 original size:83 final size:84
Alignment explanation
Indices: 8461176--8461343 Score: 266
Period size: 84 Copynumber: 2.0 Consensus size: 84
8461166 GAAAAATAAT
* *
8461176 TCCTTCAAACTAGGAAAAAACAAACTCATCATCTTTTCCA-CCCAAGGTACCATCAAACATGTCA
1 TCCTTCAAACTAGGAAAAAACAAACTCATCATATTCTCCACCCCAAGGTACCATCAAACATGTCA
* *
8461240 TATTTTCTCATACTAAACC
66 TACTGTCTCATACTAAACC
* *
8461259 TCCTTCAAACTAGGAAAAAACAAACTCATCATATTCTCCACCCCAAGGTACCGTCAAATATGTCA
1 TCCTTCAAACTAGGAAAAAACAAACTCATCATATTCTCCACCCCAAGGTACCATCAAACATGTCA
*
8461324 TACTGTCTCATACTGAACC
66 TACTGTCTCATACTAAACC
8461343 T
1 T
8461344 ATTTCAATCC
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
83 38 0.49
84 39 0.51
ACGTcount: A:0.36, C:0.29, G:0.08, T:0.27
Consensus pattern (84 bp):
TCCTTCAAACTAGGAAAAAACAAACTCATCATATTCTCCACCCCAAGGTACCATCAAACATGTCA
TACTGTCTCATACTAAACC
Found at i:8463214 original size:2 final size:2
Alignment explanation
Indices: 8463202--8463240 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
8463192 TCTTAACCAG
*
8463202 GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8463241 TTACCATCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8466430 original size:24 final size:26
Alignment explanation
Indices: 8466377--8466446 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 26
8466367 ATAATCCCTG
8466377 AAAT-TAATTAAATCCTC-TAAAATAATA
1 AAATATAATTAAAT-CTCATAAAA-AA-A
*
8466404 AAAAATTAATTAAATCTCATAAAAAAA
1 AAATA-TAATTAAATCTCATAAAAAAA
8466431 AAATAATAATTAAATC
1 AAAT-ATAATTAAATC
8466447 CTTCATTAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
27 17 0.46
28 6 0.16
29 14 0.38
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (26 bp):
AAATATAATTAAATCTCATAAAAAAA
Found at i:8466452 original size:29 final size:30
Alignment explanation
Indices: 8466377--8466448 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
8466367 ATAATCCCTG
8466377 AAATTAATTAAATCCTC-TAAAATAATAAA
1 AAATTAATTAAATCCTCATAAAATAATAAA
8466406 AAATTAATTAAAT-CTCATAAAA-AA-AAA
1 AAATTAATTAAATCCTCATAAAATAATAAA
8466433 ATAA-TAATTAAATCCT
1 A-AATTAATTAAATCCT
8466449 TCATTAACAT
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
27 13 0.32
28 9 0.22
29 18 0.45
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (30 bp):
AAATTAATTAAATCCTCATAAAATAATAAA
Found at i:8466782 original size:16 final size:14
Alignment explanation
Indices: 8466752--8466785 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
8466742 TCTACGTATA
8466752 ATATATTATATTTC
1 ATATATTATATTTC
8466766 ATATGATTATAATTTC
1 ATAT-ATTAT-ATTTC
8466782 ATAT
1 ATAT
8466786 TATAAACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 5 0.28
16 9 0.50
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (14 bp):
ATATATTATATTTC
Found at i:8478803 original size:10 final size:11
Alignment explanation
Indices: 8478779--8478807 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8478769 TAGATTTATG
8478779 GTCCTAAAAAT
1 GTCCTAAAAAT
8478790 GTCCTAAAAA-
1 GTCCTAAAAAT
8478800 GTCCTAAA
1 GTCCTAAA
8478808 GAAAAGGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.24
Consensus pattern (11 bp):
GTCCTAAAAAT
Found at i:8483882 original size:31 final size:31
Alignment explanation
Indices: 8483836--8483901 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 31
8483826 GATTTTTGTC
8483836 TTTTTTTTTCTTTTTTGACAGTT-AAGTTTTT
1 TTTTTTTTTCTTTTTTGACAGTTCAA-TTTTT
*
8483867 TTTTTCTTTTC-TTTTTGGCAGTTCAATTTTT
1 TTTTT-TTTTCTTTTTTGACAGTTCAATTTTT
8483898 TTTT
1 TTTT
8483902 ATAAATCAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 25 0.78
32 7 0.22
ACGTcount: A:0.11, C:0.09, G:0.09, T:0.71
Consensus pattern (31 bp):
TTTTTTTTTCTTTTTTGACAGTTCAATTTTT
Found at i:8484902 original size:17 final size:18
Alignment explanation
Indices: 8484867--8484904 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8484857 TAAAAATTCA
*
8484867 AAAAAATAATAATAGTAT
1 AAAAAATAAAAATAGTAT
8484885 AAAAAATAAAAATA-TAT
1 AAAAAATAAAAATAGTAT
8484902 AAA
1 AAA
8484905 CTAAAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (18 bp):
AAAAAATAAAAATAGTAT
Found at i:8486092 original size:33 final size:29
Alignment explanation
Indices: 8486055--8486115 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 29
8486045 TAAGGTAAGA
8486055 AAAAGAAAAGGAAAAAAATAAAGGAAAAGAGGG
1 AAAAGAAAA--AAAAAAATAAA--AAAAGAGGG
*
8486088 AAAAGAAAAATAAAAATAAAAAAAGAGG
1 AAAAGAAAAAAAAAAATAAAAAAAGAGG
8486116 TACAAATAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 8 0.30
31 10 0.37
33 9 0.33
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (29 bp):
AAAAGAAAAAAAAAAATAAAAAAAGAGGG
Found at i:8489963 original size:98 final size:98
Alignment explanation
Indices: 8489812--8489996 Score: 325
Period size: 98 Copynumber: 1.9 Consensus size: 98
8489802 TATAGAAATA
**
8489812 ATTAACAAATGGACTTAATTGGTTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
1 ATTAACAAATGGACTTAATTAATTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
*
8489877 CAAATGGCTTAATTGATTTTTTTTAATTTCTTC
66 CAAATGACTTAATTGATTTTTTTTAATTTCTTC
*
8489910 ATTAACGAATGGACTTAATTAATTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
1 ATTAACAAATGGACTTAATTAATTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
*
8489975 CAAGTGACTTAATTGATTTTTT
66 CAAATGACTTAATTGATTTTTT
8489997 AAAAAATTTC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 82 1.00
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.41
Consensus pattern (98 bp):
ATTAACAAATGGACTTAATTAATTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
CAAATGACTTAATTGATTTTTTTTAATTTCTTC
Found at i:8495903 original size:82 final size:80
Alignment explanation
Indices: 8495779--8495941 Score: 229
Period size: 82 Copynumber: 2.0 Consensus size: 80
8495769 AGAAAAATAA
* * *
8495779 TCCTTCAACTAGGAAAACAAACTCATCATCTTTTCCACCCAAGGTACCATCAAACATGTCATATT
1 TCCTTCAACTAGGAAAACAAACTCATCATCATCTCCACCCAAGGTACCATCAAACATGTCATACT
*
8495844 TTCTCATACTAAACC
66 GTCTCATACTAAACC
* *
8495859 TCCTTCAACTAGGAAAAAACAAACTCATCAT-ATCTCCACCCCAAGGTACCGTCAAATATGTCAT
1 TCCTTCAACTAGG--AAAACAAACTCATCATCATCTCCA-CCCAAGGTACCATCAAACATGTCAT
*
8495923 ACTGTCTCATACTGAACC
63 ACTGTCTCATACTAAACC
8495941 T
1 T
8495942 ATTTCAATCC
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 13 0.18
81 5 0.07
82 55 0.75
ACGTcount: A:0.35, C:0.30, G:0.08, T:0.27
Consensus pattern (80 bp):
TCCTTCAACTAGGAAAACAAACTCATCATCATCTCCACCCAAGGTACCATCAAACATGTCATACT
GTCTCATACTAAACC
Found at i:8497515 original size:2 final size:2
Alignment explanation
Indices: 8497508--8497535 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8497498 ATTAATAACC
8497508 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8497536 TTACCATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8500571 original size:18 final size:19
Alignment explanation
Indices: 8500548--8500585 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
8500538 TAAAATCTTT
*
8500548 TAAAATTATT-TTTTTTAA
1 TAAAATTATTATTTTATAA
8500566 TAAAATTATTATTTTATAA
1 TAAAATTATTATTTTATAA
8500585 T
1 T
8500586 TTTTTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TAAAATTATTATTTTATAA
Found at i:8501034 original size:16 final size:14
Alignment explanation
Indices: 8501004--8501037 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
8500994 CTACGTTATA
8501004 ATATATTATATTTC
1 ATATATTATATTTC
8501018 ATATGATTATAATTTC
1 ATAT-ATTAT-ATTTC
8501034 ATAT
1 ATAT
8501038 TATAAACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 5 0.28
16 9 0.50
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (14 bp):
ATATATTATATTTC
Found at i:8515177 original size:10 final size:11
Alignment explanation
Indices: 8515153--8515181 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8515143 TAGATTTATG
8515153 GTCCTAAAAAT
1 GTCCTAAAAAT
8515164 GTCCTAAAAA-
1 GTCCTAAAAAT
8515174 GTCCTAAA
1 GTCCTAAA
8515182 GAAAAGGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.24
Consensus pattern (11 bp):
GTCCTAAAAAT
Found at i:8520095 original size:29 final size:28
Alignment explanation
Indices: 8520056--8520116 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
8520046 TGATTTTGTC
8520056 TTTTTTTTCTTTTTGACAGTT-AAGTTTT
1 TTTTTTTTCTTTTTGACAGTTCAA-TTTT
*
8520084 TTTTCTTTTCTTTTTGGCAGTTCAATTTT
1 TTTT-TTTTCTTTTTGACAGTTCAATTTT
8520113 TTTT
1 TTTT
8520117 ATAAATCAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 4 0.13
29 24 0.80
30 2 0.07
ACGTcount: A:0.11, C:0.10, G:0.10, T:0.69
Consensus pattern (28 bp):
TTTTTTTTCTTTTTGACAGTTCAATTTT
Found at i:8521085 original size:17 final size:18
Alignment explanation
Indices: 8521050--8521088 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
8521040 TTTAAAATTC
*
8521050 AAAAAATAATAATAGTAT
1 AAAAAATAAAAATAGTAT
8521068 AAAAAATAAAAATA-TAT
1 AAAAAATAAAAATAGTAT
8521085 AAAA
1 AAAA
8521089 CTAAAAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
AAAAAATAAAAATAGTAT
Found at i:8526102 original size:98 final size:98
Alignment explanation
Indices: 8525951--8526135 Score: 325
Period size: 98 Copynumber: 1.9 Consensus size: 98
8525941 TATAGAAATA
**
8525951 ATTAACAAATGGACTTAATTGGTTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
1 ATTAACAAATGGACTTAATTAATTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
*
8526016 CAAATGGCTTAATTGATTTTTTTTAATTTCTTC
66 CAAATGACTTAATTGATTTTTTTTAATTTCTTC
*
8526049 ATTAACGAATGGACTTAATTAATTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
1 ATTAACAAATGGACTTAATTAATTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
*
8526114 CAAGTGACTTAATTGATTTTTT
66 CAAATGACTTAATTGATTTTTT
8526136 AAAAAATTTC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 82 1.00
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.41
Consensus pattern (98 bp):
ATTAACAAATGGACTTAATTAATTTTTAGTTAACAAACAAGAGCTAAATTGAGTGTGAATTATAT
CAAATGACTTAATTGATTTTTTTTAATTTCTTC
Found at i:8529521 original size:21 final size:21
Alignment explanation
Indices: 8529495--8529535 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8529485 TTTAAGAAAA
*
8529495 CTGAAAAACTATTCTAATTGC
1 CTGAAAAACTAGTCTAATTGC
8529516 CTGAAAAACTAGTCTAATTG
1 CTGAAAAACTAGTCTAATTG
8529536 TTGATAAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (21 bp):
CTGAAAAACTAGTCTAATTGC
Found at i:8532119 original size:83 final size:84
Alignment explanation
Indices: 8532012--8532179 Score: 266
Period size: 84 Copynumber: 2.0 Consensus size: 84
8532002 GAAAAATAAT
* *
8532012 TCCTTCAAACTAGGAAAAAACAAACTCATCATCTTTTCCA-CCCAAGGTACCATCAAACATGTCA
1 TCCTTCAAACTAGGAAAAAACAAACTCATCATATTCTCCACCCCAAGGTACCATCAAACATGTCA
* *
8532076 TATTTTCTCATACTAAACC
66 TACTGTCTCATACTAAACC
* *
8532095 TCCTTCAAACTAGGAAAAAACAAACTCATCATATTCTCCACCCCAAGGTACCGTCAAATATGTCA
1 TCCTTCAAACTAGGAAAAAACAAACTCATCATATTCTCCACCCCAAGGTACCATCAAACATGTCA
*
8532160 TACTGTCTCATACTGAACC
66 TACTGTCTCATACTAAACC
8532179 T
1 T
8532180 ATTTCAATCC
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
83 38 0.49
84 39 0.51
ACGTcount: A:0.36, C:0.29, G:0.08, T:0.27
Consensus pattern (84 bp):
TCCTTCAAACTAGGAAAAAACAAACTCATCATATTCTCCACCCCAAGGTACCATCAAACATGTCA
TACTGTCTCATACTAAACC
Found at i:8534048 original size:2 final size:2
Alignment explanation
Indices: 8534036--8534074 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
8534026 TCTTAACCAG
*
8534036 GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8534075 TTACCATCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8537260 original size:31 final size:30
Alignment explanation
Indices: 8537225--8537304 Score: 112
Period size: 31 Copynumber: 2.7 Consensus size: 30
8537215 ATAATCCCTG
8537225 AAATTAATTAAATCCTTC-TAAAATAATTAAA
1 AAATTAATTAAATCCTTCATAAAATAA--AAA
8537256 AAATTAATTAAAT-CTTCATAAAATAAAAA
1 AAATTAATTAAATCCTTCATAAAATAAAAA
8537285 ATAA-TAATTAAATCCTTCAT
1 A-AATTAATTAAATCCTTCAT
8537305 TAACATTTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
29 13 0.28
30 12 0.26
31 21 0.46
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (30 bp):
AAATTAATTAAATCCTTCATAAAATAAAAA
Found at i:8537654 original size:16 final size:14
Alignment explanation
Indices: 8537624--8537657 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
8537614 CTACGTTATA
8537624 ATATATTATATTTC
1 ATATATTATATTTC
8537638 ATATGATTATAATTTC
1 ATAT-ATTAT-ATTTC
8537654 ATAT
1 ATAT
8537658 TATAAACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 5 0.28
16 9 0.50
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (14 bp):
ATATATTATATTTC
Found at i:8542043 original size:114 final size:114
Alignment explanation
Indices: 8541732--8542168 Score: 305
Period size: 114 Copynumber: 3.9 Consensus size: 114
8541722 AGCTTCAAAG
* * * * * * *
8541732 ACATTAGTGGCGCTTCA-AACAAAACACCGCAAAAGTCAAA-CATTAGCGGTGCTTTTACAAAAG
1 ACATTAGTGGCGCTTTACAA-AAAACGCCGCAAAAGTCAAAGCATTAGCAGCGCATTAACGAAAG
* * * * * * * ** * ** *
8541795 CACCGCAAAACTGTTAAACAGACGATGTCGTTTTAT-TTTAGGTTTAGAG
65 CGCCACAAAAGTTTTAAGCAAACGACGTCGTTTCCTGTTGAGCATTAGAC
* * * * * * * ** *
8541844 ACATTAGCGGCG-TTTATAAGGAAACGCCGCAAAAGATCATA-TATTAGCGGCGCTTTCTCCAAA
1 ACATTAGTGGCGCTTTACAA-AAAACGCCGCAAAAG-TCAAAGCATTAGCAGCGCATTAACGAAA
* **
8541907 GCGCCACAAAAGTTTT-ATCAAACGACGTCGTTTCCATGTTGAGGTTTAGAC
64 GCGCCACAAAAGTTTTAAGCAAACGACGTCGTTTCC-TGTTGAGCATTAGAC
* * ** * *
8541958 ACATTAGTGGCGCTTTACATAAAACGCTGCGTAAGTCAAA-CATTAGCGGCG-ATTAAGGAAAGC
1 ACATTAGTGGCGCTTTACAAAAAACGCCGCAAAAGTCAAAGCATTAGCAGCGCATTAACGAAAGC
* * *
8542021 GCCACAAAAAGTTTTAAGCAAACGGCGTCGTTTTTCTGTTGAGCATTAGAG
66 GCCAC-AAAAGTTTTAAGCAAACGACGTCG-TTTCCTGTTGAGCATTAGAC
* * * ** *
8542072 ACATTAGTGGCGCTTTGCAAAAAATGCCGCAAAAGTCAAAGCATTAGCAGCGCTTTCTCGAAAGT
1 ACATTAGTGGCGCTTTACAAAAAACGCCGCAAAAGTCAAAGCATTAGCAGCGCATTAACGAAAGC
* * *
8542137 GCCACAATAGTTTTAGGCAAACGACGACGTTT
66 GCCACAAAAGTTTTAAGCAAACGACGTCGTTT
8542169 TTTTTTAAAT
Statistics
Matches: 257, Mismatches: 58, Indels: 18
0.77 0.17 0.05
Matches are distributed among these distances:
111 3 0.01
112 52 0.20
113 57 0.22
114 94 0.37
115 39 0.15
116 12 0.05
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.25
Consensus pattern (114 bp):
ACATTAGTGGCGCTTTACAAAAAACGCCGCAAAAGTCAAAGCATTAGCAGCGCATTAACGAAAGC
GCCACAAAAGTTTTAAGCAAACGACGTCGTTTCCTGTTGAGCATTAGAC
Found at i:8542264 original size:113 final size:113
Alignment explanation
Indices: 8542016--8542282 Score: 277
Period size: 113 Copynumber: 2.3 Consensus size: 113
8542006 GCGATTAAGG
* * ** * *
8542016 AAAGCGCCACAAAAAGTTTTAAGCAAACGGCGTCGTTTTTCTGTTGAGCA-TTAGAGACATTAGT
1 AAAGCACCAC-AAAAGTTTTAAGCAAACGACAACGTTTTT-T-TTTA-AATTTAGAGACATTAGT
* * * * * *
8542080 GGCGCTTTGCAAAAAATGCCGCAAAAGTCAAAGCATTAGCAGCGCTTTCTCG
62 GGAGCATTCCAAAAAATGCCGCAAAAGTCAAAGAATTAGCAGCGCTTTCGCA
** * * *
8542132 AAAGTGCCACAATAGTTTTAGGCAAACGACGACGTTTTTTTTTAAATTTAGAGACATTAGTGGAG
1 AAAGCACCACAAAAGTTTTAAGCAAACGACAACGTTTTTTTTTAAATTTAGAGACATTAGTGGAG
** *
8542197 CATTCCTCAAAATGCCGCAAAAGTC-AAGAATTAGCGGCGCTTTCGCA
66 CATTCCAAAAAATGCCGCAAAAGTCAAAGAATTAGCAGCGCTTTCGCA
**
8542244 AAAGCACCGTAAAAGTTTTTAAGCAAACGACAACGTTTT
1 AAAGCACCACAAAAG-TTTTAAGCAAACGACAACGTTTT
8542283 GTTGTTAAGG
Statistics
Matches: 126, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
112 29 0.23
113 62 0.49
114 1 0.01
115 25 0.20
116 9 0.07
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (113 bp):
AAAGCACCACAAAAGTTTTAAGCAAACGACAACGTTTTTTTTTAAATTTAGAGACATTAGTGGAG
CATTCCAAAAAATGCCGCAAAAGTCAAAGAATTAGCAGCGCTTTCGCA
Found at i:8542603 original size:39 final size:39
Alignment explanation
Indices: 8542551--8542639 Score: 151
Period size: 39 Copynumber: 2.3 Consensus size: 39
8542541 TTTAAGTGTT
*
8542551 AAGGTTTAAGGTTTATAGTTTATATATGTTTTATGATTC
1 AAGGTTTAAGGTTTATAGTTTATATATGTTCTATGATTC
*
8542590 AAGGTTTAGGGTTTATAGTTTATATATGTTCTATGATTC
1 AAGGTTTAAGGTTTATAGTTTATATATGTTCTATGATTC
*
8542629 AGGGTTTAAGG
1 AAGGTTTAAGG
8542640 AATATGGGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.27, C:0.03, G:0.22, T:0.47
Consensus pattern (39 bp):
AAGGTTTAAGGTTTATAGTTTATATATGTTCTATGATTC
Found at i:8543999 original size:29 final size:29
Alignment explanation
Indices: 8543956--8544030 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
8543946 CCTTAAATCC
* * *
8543956 AGTTATTCAAATCTTCATCTCGTCGGTTT
1 AGTTATTCAATTCTTCATCTCATCAGTTT
*
8543985 AGTTATTCATTTCTTCATCTCATCAGTTT
1 AGTTATTCAATTCTTCATCTCATCAGTTT
8544014 AGTTATTCAATTCTTCA
1 AGTTATTCAATTCTTCA
8544031 CAGCATTTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.23, C:0.20, G:0.09, T:0.48
Consensus pattern (29 bp):
AGTTATTCAATTCTTCATCTCATCAGTTT
Found at i:8545006 original size:13 final size:13
Alignment explanation
Indices: 8544988--8545025 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
8544978 GAAGTTCTGC
8544988 TTAATGTTGCTGG
1 TTAATGTTGCTGG
*
8545001 TTAATGTTAG-GGG
1 TTAATGTT-GCTGG
8545014 TTAATGTTGCTG
1 TTAATGTTGCTG
8545026 CAAGTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 1 0.05
13 19 0.90
14 1 0.05
ACGTcount: A:0.18, C:0.05, G:0.32, T:0.45
Consensus pattern (13 bp):
TTAATGTTGCTGG
Found at i:8545442 original size:21 final size:22
Alignment explanation
Indices: 8545413--8545456 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
8545403 ATAAAGGATT
*
8545413 TTAATTGGT-TTTTGCAGCTAA
1 TTAAATGGTATTTTGCAGCTAA
*
8545434 TTAAATGGTACTTTTGCTGCTAA
1 TTAAATGGTA-TTTTGCAGCTAA
8545457 GATGGTACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
23 11 0.58
ACGTcount: A:0.25, C:0.11, G:0.18, T:0.45
Consensus pattern (22 bp):
TTAAATGGTATTTTGCAGCTAA
Found at i:8545830 original size:67 final size:67
Alignment explanation
Indices: 8545688--8545820 Score: 180
Period size: 67 Copynumber: 2.0 Consensus size: 67
8545678 TATATAACAT
* * *
8545688 ATATTAATATGGATATATAACCTATATTTCAATTTTATTAATAATAAATTTTATAATTTTAAAAA
1 ATATAAAT-TGGATATATAACCTATATTCCAAATTTATTAATAATAAATTTTATAATTTTAAAAA
8545753 TAA
65 TAA
* *
8545756 ATGTAAATTGGATATATAACCTATATTCCAAATTTATTAGTAA-ACAATTTT-TAATTTTTAAAA
1 ATATAAATTGGATATATAACCTATATTCCAAATTTATTAATAATA-AATTTTATAA-TTTTAAAA
8545819 AT
64 AT
8545821 GGTTATAAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
66 4 0.07
67 48 0.83
68 6 0.10
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (67 bp):
ATATAAATTGGATATATAACCTATATTCCAAATTTATTAATAATAAATTTTATAATTTTAAAAAT
AA
Found at i:8545841 original size:67 final size:67
Alignment explanation
Indices: 8545699--8545834 Score: 159
Period size: 67 Copynumber: 2.0 Consensus size: 67
8545689 TATTAATATG
* * *
8545699 GATATATAACCTATATTTCAATTTTATTAATAATAAATTTTATAATTTTAAAAATAAATGTAAAT
1 GATATATAACCTATATTCCAAATTTATTAATAATAAATTTTATAATTTTAAAAATAAATATAAAT
**
8545764 TG
66 AA
* ***
8545766 GATATATAACCTATATTCCAAATTTATTAGTAA-ACAATTTT-TAATTTTTAAAAATGGTTATAA
1 GATATATAACCTATATTCCAAATTTATTAATAATA-AATTTTATAA-TTTTAAAAATAAATATAA
8545829 ATAA
64 ATAA
8545833 GA
1 GA
8545835 AGTATAAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
66 4 0.07
67 54 0.93
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (67 bp):
GATATATAACCTATATTCCAAATTTATTAATAATAAATTTTATAATTTTAAAAATAAATATAAAT
AA
Found at i:8545923 original size:7 final size:7
Alignment explanation
Indices: 8545851--8545875 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8545841 AAAGTGATAT
8545851 ATAATAC
1 ATAATAC
8545858 ATAATAC
1 ATAATAC
8545865 ATAATAC
1 ATAATAC
8545872 ATAA
1 ATAA
8545876 ATTTATCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
ATAATAC
Found at i:8546019 original size:9 final size:9
Alignment explanation
Indices: 8546007--8546039 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
8545997 AAACATAGCC
8546007 TACATAACT
1 TACATAACT
8546016 TACATAACT
1 TACATAACT
8546025 TACATAACT
1 TACATAACT
8546034 TACATA
1 TACATA
8546040 CATAATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (9 bp):
TACATAACT
Found at i:8546129 original size:25 final size:25
Alignment explanation
Indices: 8546101--8546154 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
8546091 ATTAATATTA
*
8546101 TACACAACTTACATAATACATTACT
1 TACACAACTTACATAATACATAACT
**
8546126 TACAGTACTTACATAATACATAACT
1 TACACAACTTACATAATACATAACT
8546151 TACA
1 TACA
8546155 TAATTTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.31
Consensus pattern (25 bp):
TACACAACTTACATAATACATAACT
Found at i:8546154 original size:9 final size:9
Alignment explanation
Indices: 8546101--8546157 Score: 52
Period size: 9 Copynumber: 6.8 Consensus size: 9
8546091 ATTAATATTA
*
8546101 TACACAACT
1 TACATAACT
8546110 TACATAA--
1 TACATAACT
*
8546117 TACATTACT
1 TACATAACT
8546126 TACAGT-ACT
1 TACA-TAACT
8546135 TACATAA--
1 TACATAACT
8546142 TACATAACT
1 TACATAACT
8546151 TACATAA
1 TACATAA
8546158 TTTTATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 13 0.32
8 1 0.03
9 25 0.62
10 1 0.03
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.32
Consensus pattern (9 bp):
TACATAACT
Found at i:8558681 original size:21 final size:21
Alignment explanation
Indices: 8558642--8558686 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
8558632 GGAAACAGCG
8558642 CTCTCTATAATAGTCTCATTTGC
1 CTCTCTATAATAG-CTCA-TTGC
*
8558665 CTCTCTATGATAG-TCATTGC
1 CTCTCTATAATAGCTCATTGC
8558685 CT
1 CT
8558687 GTCAAGATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 3 0.14
23 12 0.57
ACGTcount: A:0.20, C:0.27, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCTATAATAGCTCATTGC
Found at i:8560366 original size:13 final size:13
Alignment explanation
Indices: 8560350--8560380 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8560340 TAAACCAAAA
8560350 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
8560363 TTTTAAAAAGCAC
1 TTTTCAAAAGCAC
8560376 TTTTC
1 TTTTC
8560381 CACAGTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.39
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:8569249 original size:56 final size:56
Alignment explanation
Indices: 8569163--8569275 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 56
8569153 TAATTACGAG
* * **
8569163 ATTGAATTATATCTGTCATTGGGTGTGAAATTTTACAGAAGCATTTCAAGTATATT
1 ATTGAATGATATCTGTCATTGGGTATGAAATTGAACAGAAGCATTTCAAGTATATT
* **
8569219 ATTGAATGATATTTGTCATTGGGTATGAAATTGAACAGAAGCATTTTGAGTATATT
1 ATTGAATGATATCTGTCATTGGGTATGAAATTGAACAGAAGCATTTCAAGTATATT
8569275 A
1 A
8569276 GTCGAGATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (56 bp):
ATTGAATGATATCTGTCATTGGGTATGAAATTGAACAGAAGCATTTCAAGTATATT
Found at i:8574662 original size:44 final size:44
Alignment explanation
Indices: 8574574--8574774 Score: 119
Period size: 44 Copynumber: 4.7 Consensus size: 44
8574564 CTTCGATCCA
* *
8574574 CTCCACTACAACTTCAGGGAGATAGGATTATCGAATTCAATCTG
1 CTCCACTATAACTTCAGGGAGATAAGATTATCGAATTCAATCTG
* *** *
8574618 CTCCACTATAACCTCAGGGAGATAAGATT-TGCTTTTTCAGTCTG
1 CTCCACTATAACTTCAGGGAGATAAGATTAT-CGAATTCAATCTG
* * * * ** * * *
8574662 CCCCACTGTGACTTCAGGGGGATAAGA--CCCG-ATACGATTTG
1 CTCCACTATAACTTCAGGGAGATAAGATTATCGAATTCAATCTG
* * * * *
8574703 CTCCTCTACT-GCCT-AGGGAGATAAGATCTATTG-TTTCAATCTG
1 CTCCACTA-TAACTTCAGGGAGATAAGAT-TATCGAATTCAATCTG
* *
8574746 CTCCACTACAACTTCAGGGAGATAGGATT
1 CTCCACTATAACTTCAGGGAGATAAGATT
8574775 GATTTCTTCT
Statistics
Matches: 112, Mismatches: 37, Indels: 17
0.67 0.22 0.10
Matches are distributed among these distances:
40 11 0.10
41 12 0.11
42 2 0.02
43 18 0.16
44 69 0.62
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
CTCCACTATAACTTCAGGGAGATAAGATTATCGAATTCAATCTG
Found at i:8575279 original size:86 final size:86
Alignment explanation
Indices: 8575000--8575437 Score: 608
Period size: 86 Copynumber: 5.1 Consensus size: 86
8574990 ACTTGTAATC
* * * * *
8575000 TTCGACCTGCTTCACTGTTGACGCA-GAAGGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCC
1 TTCGATCTGCTTCGCTGTTAACGCAGGAA-GGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCA
* * *
8575064 ACCGATGAAGACAAGGCTTTGTT
64 ACTGATGGAGGCAAGGCTTTGTT
* * *
8575087 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTTCTATCTTCAACCAGCTCCATTGCAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCAA
*
8575152 CCGATGGAGGCAAGGCTTTGTT
65 CTGATGGAGGCAAGGCTTTGTT
* * *
8575174 TTCGATCTGCTTCGTTGTTAATGCAGGAAGGTAAGATCTGCTTCTTTAACCAGCTCCACTGCAAC
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAAC
* *
8575239 TGATGGAGGCAAGACTTTATT
66 TGATGGAGGCAAGGCTTTGTT
* * ** * *
8575260 TTTGATCTGCTTCGCTGTTAACGTAGGAATACAAGATCTGCTTTTTTAACTAGCTCCACTGCAAC
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAAC
*
8575325 TGATGGAGGCAAGACTTTGTT
66 TGATGGAGGCAAGGCTTTGTT
*
8575346 TTCGATCTGCTTCGTTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAAC
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAAC
*
8575411 TGATGGAGGCAAGGCTTTATT
66 TGATGGAGGCAAGGCTTTGTT
8575432 TTCGAT
1 TTCGAT
8575438 TTTCACTGAC
Statistics
Matches: 312, Mismatches: 38, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
86 198 0.63
87 111 0.36
88 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (86 bp):
TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTTCTTTAACCAGCTCCACTGCAAC
TGATGGAGGCAAGGCTTTGTT
Found at i:8575338 original size:43 final size:43
Alignment explanation
Indices: 8575206--8575423 Score: 121
Period size: 43 Copynumber: 5.1 Consensus size: 43
8575196 GCAGGAAGGT
* *
8575206 AAGATCTGCTTCTTTAACCAGCTCCACTGCAACTGATGGAGGC
1 AAGATCTGCTTTTTTAACTAGCTCCACTGCAACTGATGGAGGC
* * * * * **
8575249 AAGA-CT-TTATTTTTGATCT-GCTTCGCTGTTAAC-G-TAGGAATAC
1 AAGATCTGCT-TTTTT-AACTAGCTCCACTG-CAACTGAT-GG-AGGC
8575292 AAGATCTGCTTTTTTAACTAGCTCCACTGCAACTGATGGAGGC
1 AAGATCTGCTTTTTTAACTAGCTCCACTGCAACTGATGGAGGC
* ** * * ** *
8575335 AAGACTTTG-TTTTCGATCT-GCTTCGTTGTTAAC-GCA-GGAAGGC
1 AAGA-TCTGCTTTTTTAACTAGCTCCACTG-CAACTG-ATGG-AGGC
* *
8575378 AAGATCTGCTTCTTTAACCAGCTCCACTGCAACTGATGGAGGC
1 AAGATCTGCTTTTTTAACTAGCTCCACTGCAACTGATGGAGGC
8575421 AAG
1 AAG
8575424 GCTTTATTTT
Statistics
Matches: 123, Mismatches: 34, Indels: 36
0.64 0.18 0.19
Matches are distributed among these distances:
41 2 0.02
42 28 0.23
43 62 0.50
44 29 0.24
45 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (43 bp):
AAGATCTGCTTTTTTAACTAGCTCCACTGCAACTGATGGAGGC
Found at i:8579548 original size:20 final size:21
Alignment explanation
Indices: 8579506--8579549 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
8579496 TCCTTTTGCA
8579506 TTTGCTCCAGTTTCTCTAATC
1 TTTGCTCCAGTTTCTCTAATC
* * *
8579527 TTTGGTCCA-TTTCTTTAGTC
1 TTTGCTCCAGTTTCTCTAATC
8579547 TTT
1 TTT
8579550 CGACGAGTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.11, C:0.23, G:0.11, T:0.55
Consensus pattern (21 bp):
TTTGCTCCAGTTTCTCTAATC
Found at i:8583292 original size:18 final size:17
Alignment explanation
Indices: 8583269--8583316 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 17
8583259 ATGGGGCGGG
*
8583269 CGGCCCGACCCGACTCGA
1 CGGCCCG-CCCGACCCGA
8583287 CGGCCCGGCCCGACCCGA
1 CGGCCC-GCCCGACCCGA
8583305 CGGCCCGCCCGA
1 CGGCCCGCCCGA
8583317 AATATGGGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 6 0.21
18 21 0.75
19 1 0.04
ACGTcount: A:0.12, C:0.54, G:0.31, T:0.02
Consensus pattern (17 bp):
CGGCCCGCCCGACCCGA
Found at i:8583380 original size:32 final size:34
Alignment explanation
Indices: 8583311--8583382 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 34
8583301 CCGACGGCCC
* *
8583311 GCCCGAAATATGGGAGGGTTTGGGTAAAAATATAG
1 GCCCGAAATAT-GGAGGCTTTGGGTAAAAATAGAG
8583346 GCCCGAAATAT-G-GGCTTTGGGTAAAAA-ACGAG
1 GCCCGAAATATGGAGGCTTTGGGTAAAAATA-GAG
8583378 GCCCG
1 GCCCG
8583383 TTTAGAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 1 0.03
32 21 0.62
33 1 0.03
35 11 0.32
ACGTcount: A:0.32, C:0.15, G:0.33, T:0.19
Consensus pattern (34 bp):
GCCCGAAATATGGAGGCTTTGGGTAAAAATAGAG
Found at i:8583496 original size:11 final size:11
Alignment explanation
Indices: 8583482--8583588 Score: 72
Period size: 11 Copynumber: 10.4 Consensus size: 11
8583472 ATTTTTTTAA
8583482 TTTTAAAATAT
1 TTTTAAAATAT
8583493 TTTTAAAATAAT
1 TTTTAAAAT-AT
***
8583505 TTTTATTTTAT
1 TTTTAAAATAT
*
8583516 TTTT----TAA
1 TTTTAAAATAT
8583523 TTTTAAAATAT
1 TTTTAAAATAT
8583534 TTTTAAAATACT
1 TTTTAAAATA-T
8583546 TTTT-AAAT-T
1 TTTTAAAATAT
*
8583555 TTTT----TAA
1 TTTTAAAATAT
8583562 TTTTAAAATAT
1 TTTTAAAATAT
8583573 TTTTAAAATACT
1 TTTTAAAATA-T
8583585 TTTT
1 TTTT
8583589 TTAATTTTTA
Statistics
Matches: 77, Mismatches: 7, Indels: 23
0.72 0.07 0.21
Matches are distributed among these distances:
6 1 0.01
7 10 0.13
9 5 0.06
11 43 0.56
12 18 0.23
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:8583549 original size:30 final size:30
Alignment explanation
Indices: 8583493--8583579 Score: 83
Period size: 30 Copynumber: 3.0 Consensus size: 30
8583483 TTTAAAATAT
*** *
8583493 TTTTAAAATAATTTTTATTTTATTTTTTAA
1 TTTTAAAATAATTTTTAAAATATTTTTAAA
8583523 TTTTAAAAT-ATTTTTAAAATACTTTTTAAA
1 TTTTAAAATAATTTTTAAAATA-TTTTTAAA
**
8583553 TTTT--TTTAA-TTTTAAAATATTTTTAAA
1 TTTTAAAATAATTTTTAAAATATTTTTAAA
8583580 ATACTTTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
27 8 0.16
28 11 0.22
29 10 0.20
30 20 0.41
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (30 bp):
TTTTAAAATAATTTTTAAAATATTTTTAAA
Found at i:8583569 original size:39 final size:39
Alignment explanation
Indices: 8583465--8583597 Score: 203
Period size: 39 Copynumber: 3.3 Consensus size: 39
8583455 AATATATTTA
*
8583465 TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATAA
1 TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATAC
**
8583504 TTTTTATTTTATTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTA-AAT-TTTTTTAATTTTAAAATATTTTTAAAATAC
8583545 TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATAC
*
8583584 TTTTTTTAATTTTT
1 -TTTTTAAATTTTT
8583598 AAAATAAATT
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 36 0.42
40 14 0.16
41 35 0.41
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (39 bp):
TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:8583609 original size:21 final size:21
Alignment explanation
Indices: 8583571--8583610 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8583561 ATTTTAAAAT
**
8583571 ATTTTTAAAATACTTTTTTTA
1 ATTTTTAAAATAAATTTTTTA
8583592 ATTTTTAAAATAAATTTTT
1 ATTTTTAAAATAAATTTTT
8583611 GGTGTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTTAAAATAAATTTTTTA
Found at i:8592077 original size:45 final size:43
Alignment explanation
Indices: 8592011--8592140 Score: 143
Period size: 45 Copynumber: 2.9 Consensus size: 43
8592001 GCTATATGCC
**
8592011 TAAAATGATGAAGACCATAGCTGAAAGATGATATTTCATCATGA
1 TAAAATGAT-AAGACCATAGCTGAAAGATGATATGGCATCATGA
* * *
8592055 TATAAATGAGTAAGACCATAGCTGAAAGTTGCTATGGCATCATGG
1 TA-AAATGA-TAAGACCATAGCTGAAAGATGATATGGCATCATGA
* * *
8592100 TAAATATGACTACGACCATAGCTAAAAGACGATATGGCATC
1 TAAA-ATGA-TAAGACCATAGCTGAAAGATGATATGGCATC
8592141 CTAATAGTCC
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
44 4 0.06
45 67 0.93
46 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (43 bp):
TAAAATGATAAGACCATAGCTGAAAGATGATATGGCATCATGA
Found at i:8596136 original size:45 final size:45
Alignment explanation
Indices: 8596057--8596142 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
8596047 TCCTTGACCA
* * * * *
8596057 AGTATAAATAATTAATAGTAAATATTATGTAATTTAGTTAAATTT
1 AGTACAAACAATTAATAATAAATACTATGCAATTTAGTTAAATTT
*
8596102 AGTACAAACAATTTATAATAAATACTATGCAATTTAGTTAA
1 AGTACAAACAATTAATAATAAATACTATGCAATTTAGTTAA
8596143 TTATTTAGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.48, C:0.05, G:0.08, T:0.40
Consensus pattern (45 bp):
AGTACAAACAATTAATAATAAATACTATGCAATTTAGTTAAATTT
Found at i:8597973 original size:23 final size:23
Alignment explanation
Indices: 8597942--8597994 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
8597932 AGTGTTGTTG
8597942 ATCAGTGGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTTCAGCTACAT
* *
8597965 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCAGCTACAT
8597988 ATCAGTG
1 ATCAGTG
8597995 TGGCACTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCAGCTACAT
Found at i:8610738 original size:15 final size:16
Alignment explanation
Indices: 8610708--8610740 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8610698 AGAAAAAGGG
*
8610708 TAAAATCTGGGCAAGT
1 TAAAATCTGCGCAAGT
8610724 TAAAATCT-CGCAAGT
1 TAAAATCTGCGCAAGT
8610739 TA
1 TA
8610741 GGACTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (16 bp):
TAAAATCTGCGCAAGT
Found at i:8612766 original size:38 final size:38
Alignment explanation
Indices: 8612715--8612791 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
8612705 ACAAGCATGC
8612715 TGCGTGCAAATCCACTCACTCCAATTAAAGTAAAAGAA
1 TGCGTGCAAATCCACTCACTCCAATTAAAGTAAAAGAA
*
8612753 TGCGTGCAAATCCATTCACTCCAATTAAAGTAAAAGAA
1 TGCGTGCAAATCCACTCACTCCAATTAAAGTAAAAGAA
8612791 T
1 T
8612792 TTTCACTCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.22, G:0.13, T:0.23
Consensus pattern (38 bp):
TGCGTGCAAATCCACTCACTCCAATTAAAGTAAAAGAA
Found at i:8615211 original size:24 final size:24
Alignment explanation
Indices: 8615179--8615236 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
8615169 TCATGCTCAG
8615179 AATCAGTCATACAAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
* *
8615203 AATCAGTCATACCAATCACAGACA
1 AATCAGTCATACAAATCACAAACA
8615227 AATCAGTCAT
1 AATCAGTCAT
8615237 TTACATCACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.48, C:0.26, G:0.07, T:0.19
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAAACA
Found at i:8615244 original size:24 final size:24
Alignment explanation
Indices: 8615179--8615268 Score: 94
Period size: 24 Copynumber: 3.8 Consensus size: 24
8615169 TCATGCTCAG
** * *
8615179 AATCAGTCATACAAATCACAAACA
1 AATCAGTCATTTACATCACAGACA
8615203 AATCAGTCA--TACCAATCACAGACA
1 AATCAGTCATTTA-C-ATCACAGACA
*
8615227 AATCAGTCATTTACATCACAGATA
1 AATCAGTCATTTACATCACAGACA
*
8615251 AATCAATCATTTACATCA
1 AATCAGTCATTTACATCA
8615269 TGGACCAATC
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
22 1 0.02
24 53 0.93
25 1 0.02
26 2 0.04
ACGTcount: A:0.47, C:0.24, G:0.06, T:0.23
Consensus pattern (24 bp):
AATCAGTCATTTACATCACAGACA
Found at i:8615278 original size:24 final size:24
Alignment explanation
Indices: 8615223--8615314 Score: 94
Period size: 24 Copynumber: 3.8 Consensus size: 24
8615213 ACCAATCACA
* **
8615223 GACAAATCAGTCATTTACATCACA
1 GACAAATCAATCATTTACATCATG
*
8615247 GATAAATCAATCATTTACATCATG
1 GACAAATCAATCATTTACATCATG
* *
8615271 GACCAATCTATCATTTACACTCGATG
1 GACAAATCAATCATTTACA-TC-ATG
* *
8615297 GGCAAAACAATCATTTAC
1 GACAAATCAATCATTTAC
8615315 CCTCTAGGGG
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
24 36 0.65
25 2 0.04
26 17 0.31
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (24 bp):
GACAAATCAATCATTTACATCATG
Found at i:8615424 original size:27 final size:27
Alignment explanation
Indices: 8615330--8615474 Score: 123
Period size: 27 Copynumber: 5.3 Consensus size: 27
8615320 AGGGGCGTTA
* * *
8615330 GGGTCATTACGGTCATTTTATCTTACAG
1 GGGT-ATTACGATCATTTTACCCTACAG
* * * *
8615358 AGGCATTATGGTCATTTTACCCGT-C-G
1 GGGTATTACGATCATTTTACCC-TACAG
* *
8615384 GCGGTATTATGATCATTTTACCCTATAG
1 G-GGTATTACGATCATTTTACCCTACAG
* * *
8615412 GGGTTTTTCGATCATTTTACCCTACAT
1 GGGTATTACGATCATTTTACCCTACAG
* *
8615439 GGGTATTACGGTCATTTTACCTTACAG
1 GGGTATTACGATCATTTTACCCTACAG
8615466 GGGTATTAC
1 GGGTATTAC
8615475 AGTTATTTTA
Statistics
Matches: 94, Mismatches: 19, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
26 2 0.02
27 87 0.93
28 5 0.05
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTACGATCATTTTACCCTACAG
Found at i:8622270 original size:21 final size:21
Alignment explanation
Indices: 8622232--8622271 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8622222 CTAGAAATTA
**
8622232 ATTTAATTTCTTCAAATTATT
1 ATTTAATTAATTCAAATTATT
*
8622253 ATTTAATTAATTCTAATTA
1 ATTTAATTAATTCAAATTA
8622272 AATAATTGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTTAATTAATTCAAATTATT
Done.