Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 49 of 214
Found at i:13403184 original size:129 final size:129
Alignment explanation
Indices: 13402954--13403188 Score: 407
Period size: 129 Copynumber: 1.8 Consensus size: 129
13402944 AGAACAAAGG
* *
13402954 TATTCAAATTTCAATTCCCTTTTTCTTCTCTTGGAACAATTCCATGGAAAATTTTAGATCCAAAT
1 TATTCAAATGTCAATTCCCTTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATCCAAAT
13403019 CATGTAGGGAAGGAAAGACTCAACAAATAGAGAGCAAGAATGACATAAATGGCATGCAAGATCT
66 CATGTAGGGAAGGAAAGACTCAACAAATAGAGAGCAAGAATGACATAAATGGCATGCAAGATCT
* * * *
13403083 TATTCAAATGTCAATTCCTTTTTTCTTCTTTTAGAACAATTCCATGGAAACTTTTAGATTCAAAT
1 TATTCAAATGTCAATTCCCTTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATCCAAAT
*
13403148 CATGTAGGGAAGGAAAGGCTCAACAAATAGAGAGCAAGAAT
66 CATGTAGGGAAGGAAAGACTCAACAAATAGAGAGCAAGAAT
13403189 AGCATCAATG
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
129 99 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.30
Consensus pattern (129 bp):
TATTCAAATGTCAATTCCCTTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATCCAAAT
CATGTAGGGAAGGAAAGACTCAACAAATAGAGAGCAAGAATGACATAAATGGCATGCAAGATCT
Found at i:13411107 original size:487 final size:485
Alignment explanation
Indices: 13410076--13411350 Score: 1930
Period size: 487 Copynumber: 2.6 Consensus size: 485
13410066 GATTCGGGTG
* *
13410076 ATTTCTCAAAATCATTCGAAATTGGATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
1 ATTTCTCGAAATCATTCAAAATT-GATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
* * * *
13410141 AATGAGTCCCAAGATTGCAATATCGGTTTTAATTACAAATATTCGTAGTCAGTTCAATTACACAT
65 AATGAGTCCCAAGATTGCTATATCGGTTTTAATTACAAATATTCGTAGCCAGTTCGATTACACGT
* * * * * * *
13410206 CGTTATACCGCACGGCATGGATCACAAAACATAAAGTATTTGAGAAGATGCATAATGGGTGGGAT
130 CGTCATA-CGTAAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGGAT
*
13410271 GCGTCATACAATGATTTGTGGCAGTGGTGTCAGGTACTGGAGAAGTACATTCCAGATTGCGTAAA
194 GCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACATTCCAGATTGCGTAAA
* * * *
13410336 CTTCCACATTGTTAAATCTTAGTCTGGTAAGTTCAAGG-AAAAATGTGCAATGCGAGACAACAGA
259 CTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAAGTGCAATGCAAGACAACAAA
* *
13410400 TGTGCATGGAAAATCATGGCTTTTATTTAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTTAC
324 TGTGCATGGAAAATCATGGCTTCTATTAAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTTAC
* * *
13410465 CGCTCTGAATATGTGTGTTGCCGTGGGTACTGTTTCAAGATCGTATTATATTTGGGTGTTGAATT
389 CGCTCTGAATACGTGTGTTGCCGTGAGTACTATTTCAAGATCGTATTATATTTGGGTGTTGAATT
13410530 CCTAACTTTAACATACTCGTATTGTTGCAAGT
454 CCTAACTTTAACATACTCGTATTGTTGCAAGT
* * *
13410562 ATTTCTCGAAATCATTCATAATTGAATTCAGAGATGATCGCAAATATAATAATACCTATGGTGAA
1 ATTTCTCGAAATCATTCAAAATTG-ATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
* * * *
13410627 AATGAGT-CCAAGGATAGCTATTTCGGTTTAAATTACAAATATTCGTAGCCAGTTTGATTACACG
65 AATGAGTCCCAA-GATTGCTATATCGGTTTTAATTACAAATATTCGTAGCCAGTTCGATTACACG
* * *
13410691 TTGTCGTATCGTAAGGCGTGGATCACAAAGCATAACA-CATTGGAGAAGATACATAATGGGTGGG
129 TCGTCATA-CGTAAGGCGTGGATCACAAAGCATAA-AGCATTGGAGAAGATGCATAATGGGTGGG
* *
13410755 ATGCGTCATAAAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACGTTCCAGATTGCGTA
192 ATGCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACATTCCAGATTGCGTA
13410820 AACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAAGTGCAATGCAAGACAACA
257 AACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAAGTGCAATGCAAGACAACA
* *
13410885 AATGTGCATGGAAAATCATGGCTTCTGTTAAGAAGAAGATAGGGTTGTGGACCATAAAAAAATTT
322 AATGTGCATGGAAAATCATGGCTTCTATTAAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTT
* * *
13410950 ATCGTTCTGAATACGTGTGTTGTCGTGAGTACTATTTCAAGA-CTGTATTATATTTGGGTGTTGA
387 ACCGCTCTGAATACGTGTGTTGCCGTGAGTACTATTTCAAGATC-GTATTATATTTGGGTGTTGA
*
13411014 ATTCCTAACTTTAACGTACTCGTATTGTTGCAAGT
451 ATTCCTAACTTTAACATACTCGTATTGTTGCAAGT
* *
13411049 ATTAT-TTGAAATCATTCAAAATTAGATTCGGAGATGATCGCAAATATAATACTACCTATAGTGA
1 ATT-TCTCGAAATCATTCAAAATT-GATTCGGAGATGATCGCAAATATAATACTACCTATGGTGA
* * * *
13411113 AAATGAGTCCCAAGATTGCTATGTCGATTTTAATGACAAATATTCGTAGCCAGTTCGATTGCACG
64 AAATGAGTCCCAAGATTGCTATATCGGTTTTAATTACAAATATTCGTAGCCAGTTCGATTACACG
* *
13411178 TCGTCATACCTCAAGGCGTGGATCACAAAGCATAAAGCATTGGAGATGATGCATAATGGGTGGGA
129 TCGTCATACGT-AAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGGA
* * * *
13411243 TGCGTCATACAATAATTTGTGGCAGTGGTGTTAGGTACTGAAGAGGTACATTCCAGATTGCCTAA
193 TGCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACATTCCAGATTGCGTAA
* *
13411308 ACTTTCACATTTTTAAATCTTAGTCTGATAAGTTCAAGGAAAA
258 ACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAA
13411351 TCAAGGCTTC
Statistics
Matches: 712, Mismatches: 67, Indels: 19
0.89 0.08 0.02
Matches are distributed among these distances:
485 5 0.01
486 265 0.37
487 436 0.61
488 6 0.01
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (485 bp):
ATTTCTCGAAATCATTCAAAATTGATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAAA
ATGAGTCCCAAGATTGCTATATCGGTTTTAATTACAAATATTCGTAGCCAGTTCGATTACACGTC
GTCATACGTAAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGGATGC
GTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACATTCCAGATTGCGTAAACT
TCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAAGTGCAATGCAAGACAACAAATG
TGCATGGAAAATCATGGCTTCTATTAAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTTACCG
CTCTGAATACGTGTGTTGCCGTGAGTACTATTTCAAGATCGTATTATATTTGGGTGTTGAATTCC
TAACTTTAACATACTCGTATTGTTGCAAGT
Found at i:13418698 original size:18 final size:18
Alignment explanation
Indices: 13418663--13418701 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
13418653 TTATATAAAT
* **
13418663 AATTATTTAAAATTATTA
1 AATTATGTAAAAAAATTA
13418681 AATTATGTAAAAAAATTA
1 AATTATGTAAAAAAATTA
13418699 AAT
1 AAT
13418702 ATAAGGATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
AATTATGTAAAAAAATTA
Found at i:13419450 original size:25 final size:25
Alignment explanation
Indices: 13419422--13419482 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
13419412 ATTATATGTT
*
13419422 AAATATTTATTTTTTATTTTTAATC
1 AAATATATATTTTTTATTTTTAATC
13419447 AAATATATATTTTTTATTTTTAATC
1 AAATATATATTTTTTATTTTTAATC
13419472 AAATATATATT
1 AAATATATATT
13419483 AAATATATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (25 bp):
AAATATATATTTTTTATTTTTAATC
Found at i:13431509 original size:31 final size:31
Alignment explanation
Indices: 13431474--13431678 Score: 259
Period size: 31 Copynumber: 6.6 Consensus size: 31
13431464 GTATATGTTT
*
13431474 TATACATTGCCAAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
13431505 TATACATTGCCGAATTTGAATTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * *
13431536 TATACATTGTCGAATTTGAATTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * * *
13431567 TATACATTGTCAAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
13431598 TATACATTGCCGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
** * * * *
13431629 TATACATTGTTGAA-TCGATTTATGTGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
13431659 TATACATTGCCGAATTTGAT
1 TATACATTGCCGAATTTGAT
13431679 CCGTATATGG
Statistics
Matches: 151, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
30 23 0.15
31 128 0.85
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.43
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:13431613 original size:93 final size:92
Alignment explanation
Indices: 13431474--13431688 Score: 295
Period size: 93 Copynumber: 2.3 Consensus size: 92
13431464 GTATATGTTT
*
13431474 TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGAATTGTATATAGATAT
1 TATACATTGCCAAATTTGATTTGTATATGGATATACATTGCCGAATTTGAATTGTATATAGATAT
* * *
13431539 ACATTGTCGAATTTGAATTGTTTATAGA
66 ACATTGTCGAA-TCGAATTATGTATAGA
* * * *
13431567 TATACATTGTCAAATTTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATAT
1 TATACATTGCCAAATTTGATTTGTATATGGATATACATTGCCGAATTTGAATTGTATATAGATAT
* * *
13431632 ACATTGTTGAATCGATTTATGTGTAGA
66 ACATTGTCGAATCGAATTATGTATAGA
* **
13431659 TATACATTGCCGAATTTGATCCGTATATGG
1 TATACATTGCCAAATTTGATTTGTATATGG
13431689 GTATTATTGT
Statistics
Matches: 107, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
92 37 0.35
93 70 0.65
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.42
Consensus pattern (92 bp):
TATACATTGCCAAATTTGATTTGTATATGGATATACATTGCCGAATTTGAATTGTATATAGATAT
ACATTGTCGAATCGAATTATGTATAGA
Found at i:13432047 original size:43 final size:43
Alignment explanation
Indices: 13431828--13432038 Score: 341
Period size: 43 Copynumber: 4.9 Consensus size: 43
13431818 TTCGAGGTGT
* *
13431828 GATTTCGTGTAAGACCATAGCTGGGCTATTTGCATCAATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
13431871 GATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
* * * *
13431914 GATTTCGTGTAAGACTATAGTTGGGCTATTAGAATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
13431957 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
* *
13432000 GATTTTGTGTAAGACCATAGCTGGGCTATTGGTATCGAT
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGAT
13432039 ACAAGATTTC
Statistics
Matches: 154, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 154 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.35
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
Found at i:13435326 original size:12 final size:13
Alignment explanation
Indices: 13435302--13435330 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
13435292 GGGCTATAAC
13435302 TATTACATTTATT
1 TATTACATTTATT
13435315 TATTAC-TTTATT
1 TATTACATTTATT
13435327 TATT
1 TATT
13435331 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTACATTTATT
Found at i:13443215 original size:31 final size:31
Alignment explanation
Indices: 13443180--13443240 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
13443170 TAGACAAAAG
*
13443180 GAAAGCCTTGACCAAGTGGAATATGTAAGGT
1 GAAAGCCTTGACCAAGTGGAATATGCAAGGT
**
13443211 GAAAGTGTTGACCAAGTGGAATATGCAAGG
1 GAAAGCCTTGACCAAGTGGAATATGCAAGG
13443241 GTCGTAGGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.31, T:0.21
Consensus pattern (31 bp):
GAAAGCCTTGACCAAGTGGAATATGCAAGGT
Found at i:13460652 original size:21 final size:20
Alignment explanation
Indices: 13460626--13460672 Score: 76
Period size: 21 Copynumber: 2.3 Consensus size: 20
13460616 AAAACGTTTG
13460626 ATAAATACCAAATTAAAAAA
1 ATAAATACCAAATTAAAAAA
*
13460646 ATTAAATACTAAATTAAAAAA
1 A-TAAATACCAAATTAAAAAA
13460667 ATAAAT
1 ATAAAT
13460673 TTAAGTACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (20 bp):
ATAAATACCAAATTAAAAAA
Found at i:13460681 original size:26 final size:24
Alignment explanation
Indices: 13460640--13460694 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 24
13460630 ATACCAAATT
13460640 AAAAAAATTAAATACTAAATTAAA
1 AAAAAAATTAAATACTAAATTAAA
* *
13460664 AAAATAAATTTAAGTACTAATTTAAA
1 AAAA-AAA-TTAAATACTAAATTAAA
13460690 AAAAA
1 AAAAA
13460695 TGTGTACCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 4 0.15
25 4 0.15
26 19 0.70
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (24 bp):
AAAAAAATTAAATACTAAATTAAA
Found at i:13462677 original size:16 final size:17
Alignment explanation
Indices: 13462646--13462683 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
13462636 GTTTCATAGT
*
13462646 AAATACATGTACGTCTC
1 AAATTCATGTACGTCTC
13462663 AAATTCATG-ACGTCTC
1 AAATTCATGTACGTCTC
13462679 AAATT
1 AAATT
13462684 GACCACAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (17 bp):
AAATTCATGTACGTCTC
Found at i:13464779 original size:613 final size:612
Alignment explanation
Indices: 13463609--13465623 Score: 3105
Period size: 613 Copynumber: 3.3 Consensus size: 612
13463599 CTTCACTTCT
* * * * *
13463609 CCTTTAAGCTCCCTACTTTCTCCCTT-AACCTCCCATCATCATATTTCTTATCCTTTTCATTGTT
1 CCTTCAAGCTCCCTTCTTTCTTCCTTCAA-CTCTCATCATCATATTTCTCATCCTTTTCATTGTT
* * ** * * *
13463673 TACTTGTTTTCGACTCTAAAATGTTTGGAATAAAAACGATTGCATGGTTAGCCCTTTTTATATCT
65 TACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACC
* ** * * * *
13463738 GCTTATATAGTGATTTTGTACCTTCTCGCACATTCTGCTTTAGGAGAAAAATTGTTTAAAGTCAT
130 GCTTATACAGCAATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAATTGTTTAAAGTCAT
13463803 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCATCTCTTGTT
195 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCATCTCTTGTT
13463868 ATTTGTTCCCTGCTAATGTTTACACATTTTTGAGAAAATATGGTATTATAGTAAAGACATATACG
260 ATTTGTTCCCTGCTAATGTTTACACATTTTTGAGAAAATATGGTATTATAGTAAAGACATATACG
13463933 TCTCAAATTCATTACATCTCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTCTCT
325 TCTCAAATTCATTACATCTCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTCTCT
13463998 TATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAAAA
390 TATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAAAA
*
13464063 CAATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATA
455 CCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATA
* * *
13464128 TAATTTTTCTTGTTTATTTAAAATAAGACAAAATCATAATAATCTAAAAATTACACCTATGAAAA
520 TAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAA
* *
13464193 TTACACAAAAATAACAAGACTACACTTAG
585 TTACACAAAAATCACAAGACTGC-CTTAG
*
13464222 CCTTCAAGCTCCCTTCTTTCTTCCTTCAAATCTCATCATCATATTTCTCATCCTTTTCATTGTTT
1 CCTTCAAGCTCCCTTCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * *
13464287 ACTTATTTTCGACTCTAAAATGTTTTGAATAGAAACTCTTGCATTGTCAGCCCTTTTTATAGCCA
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
* *
13464352 CTTATACTA-CAATTCTCTACCTTCTTGCACATTCTAATTTAGGAGAAAAACCT-TTTAAAGTCA
131 CTTATAC-AGCAATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAA-TTGTTTAAAGTCA
*
13464415 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTGTCATCTCTTGT
194 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCATCTCTTGT
* *
13464480 TATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGATATATAC
259 TATTTGTTCCCTGCTAATGTTTACACATTTTTGAGAAAATATGGTATTATAGTAAAGACATATAC
13464545 GTCTCAAATTCATTACATCTCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTCTC
324 GTCTCAAATTCATTACATCTCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTCTC
*
13464610 TTATCAGAAAAATTGGATCCAAATACTATAATAGTACGATCAAATATGGTGATTAGTAATATAAA
389 TTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAAA
13464675 ACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAAT
454 ACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAAT
* *
13464740 AAAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAA
519 ATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAA
*
13464805 ATTACACAAAAATCACAAGACTGCTTTCAG
584 ATTACACAAAAATCACAAGACTGCCTT-AG
* * * *
13464835 CCTTAAAGCTCTCTCCATTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATCT-TT
1 CCTTCAAGCTCCCTTCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCAT-TGTT
* *
13464899 TACTTA-TTTCTGACTCTAAAAAGTTTGGAATTGAAACTCTTGCATGGTCAGCCCTTTTTATAAC
65 TACTTATTTTC-GACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAAC
* * * * * * * * *
13464963 CGTTTATACATCAATTTTTTAACTTTTTGCACATTCTGATCTAGGAGAAAAGTTGTTTAAAGTCT
129 CGCTTATACAGCAATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAATTGTTTAAAGTCA
* *
13465028 TTATGAGTCCATGGTATTGTGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCT-TTGG
194 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCATCTCTT-G
* * * * *
13465092 TTATTTGTTCCCAGCTAATGTTTACA-ATTTTTTGGGGAAATATGGTATTATAGTAATGACATGT
258 TTATTTGTTCCCTGCTAATGTTTACACA-TTTTTGAGAAAATATGGTATTATAGTAAAGACATAT
* * * *
13465156 ACGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTACAACGCCACCTTCAAAAAAGTC
322 ACGTCTCAAATTCATTACATCTCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTC
* *
13465221 TCTTATCGGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATCAGTAATATA
387 TCTTATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATA
13465286 AAACCATAA-AACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTA
452 AAACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTA
*
13465350 ATATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGA
517 ATATAATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGA
* * *
13465415 AAATTACA-AAAAATCACATGATTGCCTTTAA
582 AAATTACACAAAAATCACAAGACTGCC-TTAG
* * * *
13465446 CCTTCAAGCTCCCTTCTTTTTTCCTTCAACTCTCATCATCATATTTCCCTTCCTTCTCATTGTTT
1 CCTTCAAGCTCCCTTCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
* * * * * *
13465511 ACTTCTTTTAGACTCTAAAATGTTTGGAATTGAAGCTTTTGCATGGTCAGACCTTTTTATAACCG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
** *
13465576 CTTATACAGTGATTCTC-ACACTTTTTGCACATTCTGATTTAGGAGAAA
131 CTTATACAGCAATTCTCTAC-CTTCTTGCACATTCTGATTTAGGAGAAA
13465624 TATGGTATTA
Statistics
Matches: 1283, Mismatches: 105, Indels: 30
0.90 0.07 0.02
Matches are distributed among these distances:
610 2 0.00
611 164 0.13
612 140 0.11
613 972 0.76
614 5 0.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.38
Consensus pattern (612 bp):
CCTTCAAGCTCCCTTCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGTTT
ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
CTTATACAGCAATTCTCTACCTTCTTGCACATTCTGATTTAGGAGAAAAATTGTTTAAAGTCATT
ATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCATCTCTTGTTA
TTTGTTCCCTGCTAATGTTTACACATTTTTGAGAAAATATGGTATTATAGTAAAGACATATACGT
CTCAAATTCATTACATCTCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTCTCTT
ATCAGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAAAAC
CATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATAT
AATTTTTCTTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAAT
TACACAAAAATCACAAGACTGCCTTAG
Found at i:13470577 original size:671 final size:667
Alignment explanation
Indices: 13469265--13471067 Score: 2321
Period size: 671 Copynumber: 2.7 Consensus size: 667
13469255 TTATGTAGTT
** *
13469265 ATTCTCTACCTTCTCGCACATTCTATTTTAGGAGAAAAGCTGTTTAAAGTCTTTATGAGTCCATG
1 ATTCTCTACCTTCTCGCACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTCCATG
* * *
13469330 GTATTAT-AGTCCTTTTATGTTCTTTATTTGGTAGTTGATTCTCC-TTTGGTTATTTGTTCCCTG
66 GTATTATGA-TCCTATTATGTTCCTTATTTGGTAGTTGATTCTCCTTTTGGTTATTTATTCCCTG
* * * * *
13469393 CTAATGTTTACACGGTTTTCGGGAAATATGGGATTATAGTAAAGAGATGTACGTCTCAAATTCAG
130 CTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACAAGTACGTCT-AAATTCA-
* * * * * *
13469458 TACATCTAAAATTGAT-AACAATAACCTGTAATGCCATCTCCAACAAAGTCTCTTATTGAAAAAA
193 TACGTCTCAAATTGATCAA-AATAACATGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAA
***
13469522 TTGAAGATAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACA
257 TTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACA
* * * * * *
13469587 ATTAACATTTTCAATATAAAAAATGGTTAG-ATTGTGGTTTTACTCTCGCTAATATAATTTTTC-
322 GTTAGCATTTTCAATATAAAAAATGGTT-GTATTGTCGTTTTAGTCCCACTAATATAATTTTTCA
* * *
13469650 TTTTT-TTTAAATAAGACAAAA-TAGCAATAATCTGAAAATTACACCTATGAAAATTACACAAAA
386 TTTTTATTTAAATAAGACAAAATTA-TAAAAATCTGAAAATTACACCTATGAAAATTACAAAAAA
* * *
13469713 ATCACAAGACTGCCTTTAGCCTTCAGGCTCCCTTCTTTCTTCTTCCAACCTTCAAACTCCCTCAT
450 ATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCCTTTCTTCTTCCAACCTTCAAACTCCATCAT
* ** * *
13469778 TTCTTCACTCTTCCTTAAAGCTCCCTAATTTCTTCCTTAACCTCTCATCATCGTATTTGTCATCG
515 TTCTACACTCTTCCTTAAAGCTCCCTAATTTCTTCCTTAACCTCTCATCATCAAATTTCTCATCC
*
13469843 TTTTCATTGTTTACTTATTTTTGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCCC
580 TTTTCATTGTTTACTTATTTTGGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCCC
* * *
13469908 TTTTTAAAACCACTTACACAGCG
645 TTTCTAAAACCACTTACACAACA
* *
13469931 ATTCTCTA-TTGTCTCGCACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTTCAT
1 ATTCTCTACCT-TCTCGCACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTCCAT
*
13469995 GGTATTATGATCCTATTATATTCCTTATTTGGTAGTTGATTCTCCTATTTGGTTATTTATTCCCT
65 GGTATTATGATCCTATTATGTTCCTTATTTGGTAGTTGATTCTCCT-TTTGGTTATTTATTCCC-
** * *
13470060 TG-TAATGTTTACACGTTTTTGGGGAAATATAATATTACAGCAAAGACAAGTACGTCTTAAATTC
128 TGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACAAGTACGTC-TAAATTC
* * * *
13470124 ATTACGTCTCAAATTGGTCATAAAT-ACATGCAATACTAGCTCCAACAAAGTCTCTTATCGAAAA
192 A-TACGTCTCAAATTGATCA-AAATAACATGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAA
13470188 AATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAA
255 AATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAA
* * *
13470253 CAGTTAGCATTTTCAATATAAAAAATGGATGTATTGTCATTTTAGTCCCTCTAATATAATTTTTC
320 CAGTTAGCATTTTCAATATAAAAAATGGTTGTATTGTCGTTTTAGTCCCACTAATATAATTTTTC
* * * *
13470318 ATTTTTAGTTAAAATAAGACAAAATTATAAAAATTTGAAAATTACACCAATGAAAATTACATAAA
385 ATTTTTA-TTTAAATAAGACAAAATTATAAAAATCTGAAAATTACACCTATGAAAATTACAAAAA
* * * *
13470383 AATCACAAGACTGCCTTTAGCCTTCAAGTTCCCTCCTTTCTTCTTTCATCCTTCATACTCCATCA
449 AATCACAAGACTGCCTTTAGCCTTCAAGCTCCCTCCTTTCTTCTTCCAACCTTCAAACTCCATCA
* **
13470448 TTTCTACACTCTTCCTTCAAGCTCCCTGTTTTAC-TCCTTCAA-CTCTCATCATCAAATTTCTCA
514 TTTCTACACTCTTCCTTAAAGCTCCCTAATTT-CTTCCTT-AACCTCTCATCATCAAATTTCTCA
* * *
13470511 TCCTTTTCATTGTTTACTTATTTTGGACTCTATAATGTTTGGAATATAAACTCTTGCATGGTCAG
577 TCCTTTTCATTGTTTACTTATTTTGGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAG
** * * *
13470576 CCCTTTCTATTACCGCTTATATAACA
642 CCCTTTCTAAAACCACTTACACAACA
* * * ** *
13470602 ATTTTGTACCTTCCCATACATTCTGCTTTAGGAGAAAAGTTGTTTAAAGTCTTTATGAGTCCATG
1 ATTCTCTACCTTCTCGCACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTCCATG
* * * * *
13470667 GCATTATGATCCTATTATGTTCCCTATTTGGCAATTGATTCCCCTCTCTT-GTTATTTATTCCCT
66 GTATTATGATCCTATTATGTTCCTTATTTGGTAGTTGATTCTCCT-T-TTGGTTATTTATTCCCT
* ***
13470731 GCTAATGTTTACAAGTTTTTGAAAAAATATGGTATTATAGTAAAGAC-A-T--G----------T
129 GCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACAAGTACGTCTAAATTCAT
* * *
13470782 ACGTCTCAAATTGATCACAATAACTTGCAATGCCACCT-CAAAAAAGTCTCTTATCGAAAAAATT
194 ACGTCTCAAATTGATCAAAATAACATGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAATT
* *
13470846 GGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGTAATATAAAACCATAACAACAGT
259 GAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAGT
* * * *
13470911 TAGCATTTTCAATATAAAAAATGGTTATGTTGTTGTTTTAGTCCCACTAATATAATTTTTAATTT
324 TAGCATTTTCAATATAAAAAATGGTTGTATTGTCGTTTTAGTCCCACTAATATAATTTTTCATTT
* *
13470976 TTATTTTAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAAAATTACAAAAAAATC
389 TTA-TTTAAATAAGACAAAATTATAAAAATCTGAAAATTACACCTATGAAAATTACAAAAAAATC
* * *
13471041 ACAAGATTGCCTATAACCTTCAAGCTC
453 ACAAGACTGCCTTTAGCCTTCAAGCTC
13471068 TATCCTTTTT
Statistics
Matches: 996, Mismatches: 122, Indels: 50
0.85 0.10 0.04
Matches are distributed among these distances:
654 230 0.23
655 29 0.03
665 1 0.00
666 97 0.10
667 3 0.00
668 231 0.23
669 13 0.01
670 4 0.00
671 380 0.38
672 8 0.01
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (667 bp):
ATTCTCTACCTTCTCGCACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTCCATG
GTATTATGATCCTATTATGTTCCTTATTTGGTAGTTGATTCTCCTTTTGGTTATTTATTCCCTGC
TAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACAAGTACGTCTAAATTCATAC
GTCTCAAATTGATCAAAATAACATGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAATTGA
ATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAGTTA
GCATTTTCAATATAAAAAATGGTTGTATTGTCGTTTTAGTCCCACTAATATAATTTTTCATTTTT
ATTTAAATAAGACAAAATTATAAAAATCTGAAAATTACACCTATGAAAATTACAAAAAAATCACA
AGACTGCCTTTAGCCTTCAAGCTCCCTCCTTTCTTCTTCCAACCTTCAAACTCCATCATTTCTAC
ACTCTTCCTTAAAGCTCCCTAATTTCTTCCTTAACCTCTCATCATCAAATTTCTCATCCTTTTCA
TTGTTTACTTATTTTGGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCCCTTTCTA
AAACCACTTACACAACA
Found at i:13471572 original size:611 final size:586
Alignment explanation
Indices: 13470486--13471655 Score: 1376
Period size: 596 Copynumber: 2.0 Consensus size: 586
13470476 TTTTACTCCT
* *
13470486 TCAACTCTCATCATCAAATTTCTCATCCTTTTCATTGTTTACTTATTTTGGACTCTATAATGTTT
1 TCAACTCTCATCATCAAATTGCTCATCCTTTTCATTGTTTACTTATTTTGGACTCTAAAATGTTT
* * * * * *
13470551 GGAATATAAACTCTTGCATGGTCAGCCCTTTCTATTACCGCTTATATAACAATTTTGTACCTTCC
66 GAAATAGAAACTCTTGCATGGTCAGCCCTTTCTATAACCGCTTATACAACAATTCTCTACCTTCC
* ** * *
13470616 CATACATTCTGCTTTAGGAGAAAAGTTGTTTAAAGTCTTTATGAGTCCATGGCATTATGATCCTA
131 CACACATTCTAATTTAGAAGAAAAGTTGTTTAAAGTC--TATGAGGCCATGGCATTATGATCCTA
*
13470681 TTATGTTCCCTATTTGGCAATTGATTCCCCTCTCTTGTTATTTATTCCCTGCTAATGTTTACAAG
194 TTATGTTCCCTATTTGGCAATTGATTCCCCTCTCTTGTTATTTATTCCCTGCTAATATTTACAAG
** ***
13470746 TTTTTGAAAAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTGATCACAATAACTTGCA
259 TTTTTGAAAAAATATGGTATTATAACAAAGACATGTACGTCTCAAATTGATCACAATAACCCACA
* * *
13470811 ATGCCACCTCAAAAAAGTCTCTTATCGAAAAAATTGGATCCAAATACTATAATAATACGATCAAA
324 ATCCCACCTCAAAAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAA
* * ** * *
13470876 TATGGTGATTAGTAATATAAAACCATAACAACAGTTAGCATTTTCAATATAAAAAATGGTTATGT
389 TATGATAATTAGTAATATAAAACCATAACAACAGTTAAAATTTTCAATATAAAAAATAGTTATAT
* * *
13470941 TGTTGTTTTAGTCCCACTAATATAATTTTTAATTTTTATTTTAAATAAGACAAAATCATAAGAAT
454 TGTGGTTTTAGTCCCACT-A-AT-A----TAATTTTT-TGTTAAATAAGACAAAATCATAAAAAT
* * * *
13471006 CTGAAAATTACACCTATGAAAATTACAAAAAAATCACAAGATTGCCTATAACCTTCAAGCTCTAT
511 CTAAAAATTACACCTACGAAAATTACAAAAAAACCACAAGACTGCCTATAACCTTCAAGCTCTAT
13471071 CCTTTTTTCCC
576 CCTTTTTTCCC
* * ** *
13471082 TCAACTCTCATCATCATATTGCTCATCCTTTTCATTGTTTACTTTTTTTTTACTTTAAAATGTTT
1 TCAACTCTCATCATCAAATTGCTCATCCTTTTCATTGTTTACTTATTTTGGACTCTAAAATGTTT
* * *** * *
13471147 GAAATAGAAACTTTTGCATGGTCAGCCCTTTTTATAACCGCTTATACAGTGATTCTCTAGCTTCT
66 GAAATAGAAACTCTTGCATGGTCAGCCCTTTCTATAACCGCTTATACAACAATTCTCTACCTTCC
** * ** *
13471212 TGCACATTCTAATTTAGAAGAAAA-TCTTTTTAAAGTC-ATGAGGCCATGGTTTTATGGTCCTAT
131 CACACATTCTAATTTAGAAGAAAAGT-TGTTTAAAGTCTATGAGGCCATGGCATTATGATCCTAT
** * *
13471275 TATGTTCCCTATTTGG-AAGTTGATTCTTCTCT-TTGGTTATTTGTTCCCTGCTAATATTTACAT
195 TATGTTCCCTATTTGGCAA-TTGATTCCCCTCTCTT-GTTATTTATTCCCTGCTAATATTTACAA
*** *
13471338 GTTTTTGGGGGAAATATGGTATTATAACAAAGACAAGTACGTCTCAAATTTATTCCGTCTCGAAT
258 GTTTTT-GAAAAAATATGGTATTATAACAAAGAC-A-T--G---------TA---CGTCTCAAAT
* ** *
13471403 TGATCACAATAACCCACAATCCCACCTCCAACAATTTCTCTTATCGAAAAAGTTGAATCCAAATA
306 TGATCACAATAACCCACAATCCCACCT-CAAAAAAGTCTCTTATCGAAAAAATTGAATCCAAATA
* * * *
13471468 CTATAATAATAGGAGCAAATATGATAATTAGTACTATAAAACCATAACAAGAGTTAAAATTTTTA
370 CTATAATAATACGAGCAAATATGATAATTAGTAATATAAAACCATAACAACAGTTAAAATTTTCA
* *
13471533 ATATAAAAAATAGTTATATTGTGGTTTTAGTCCCACTAATATGATTTTTTGTTGAATAAGACAAA
435 ATATAAAAAATAGTTATATTGTGGTTTTAGTCCCACTAATATAATTTTTTGTTAAATAAGACAAA
* *
13471598 ATCATAAAAATCTAAAAATTACACGTACGAAAATTACACAAAAACCACAAGACTGCCT
500 ATCATAAAAATCTAAAAATTACACCTACGAAAATTACAAAAAAACCACAAGACTGCCT
13471656 TTAGTCTTTA
Statistics
Matches: 480, Mismatches: 73, Indels: 35
0.82 0.12 0.06
Matches are distributed among these distances:
592 4 0.01
593 80 0.17
594 22 0.05
595 2 0.00
596 139 0.29
598 1 0.00
603 65 0.14
604 7 0.01
607 2 0.00
608 1 0.00
609 2 0.00
610 33 0.07
611 122 0.25
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.37
Consensus pattern (586 bp):
TCAACTCTCATCATCAAATTGCTCATCCTTTTCATTGTTTACTTATTTTGGACTCTAAAATGTTT
GAAATAGAAACTCTTGCATGGTCAGCCCTTTCTATAACCGCTTATACAACAATTCTCTACCTTCC
CACACATTCTAATTTAGAAGAAAAGTTGTTTAAAGTCTATGAGGCCATGGCATTATGATCCTATT
ATGTTCCCTATTTGGCAATTGATTCCCCTCTCTTGTTATTTATTCCCTGCTAATATTTACAAGTT
TTTGAAAAAATATGGTATTATAACAAAGACATGTACGTCTCAAATTGATCACAATAACCCACAAT
CCCACCTCAAAAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATA
TGATAATTAGTAATATAAAACCATAACAACAGTTAAAATTTTCAATATAAAAAATAGTTATATTG
TGGTTTTAGTCCCACTAATATAATTTTTTGTTAAATAAGACAAAATCATAAAAATCTAAAAATTA
CACCTACGAAAATTACAAAAAAACCACAAGACTGCCTATAACCTTCAAGCTCTATCCTTTTTTCC
C
Found at i:13472033 original size:81 final size:81
Alignment explanation
Indices: 13471923--13472084 Score: 261
Period size: 81 Copynumber: 2.0 Consensus size: 81
13471913 ATGTGACCAT
* * *
13471923 GGTATTATGGTCCTATTTTGTTCCCTATTTGGCTGTTGATTCTCCACTTTGGTTATTTGTTCCCT
1 GGTATTATAGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTATGGTTATTTGTTCCCT
13471988 TGTAATGTTTACACAG
66 TGTAATGTTTACACAG
* * *
13472004 GGTATTCTAGTCCTATTTTGTTCCTTATTTGGCAGTTGATTCTTCACTATGGTTATTTGTTCCCT
1 GGTATTATAGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTATGGTTATTTGTTCCCT
*
13472069 TGTAATGTTTGCACAG
66 TGTAATGTTTACACAG
13472085 TTTTGGGGAA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.15, C:0.18, G:0.19, T:0.48
Consensus pattern (81 bp):
GGTATTATAGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTATGGTTATTTGTTCCCT
TGTAATGTTTACACAG
Found at i:13474908 original size:13 final size:13
Alignment explanation
Indices: 13474890--13474915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13474880 ATATGTGATT
13474890 ATTCATCTACAAA
1 ATTCATCTACAAA
13474903 ATTCATCTACAAA
1 ATTCATCTACAAA
13474916 TTGTTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
ATTCATCTACAAA
Found at i:13477064 original size:42 final size:42
Alignment explanation
Indices: 13476974--13477084 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 42
13476964 CCTCATAAAC
* * * * *
13476974 AACTTCTAAACCATCTCCAACATCCTATAAACCTTCACCAGT
1 AACTTTTAAACCATCTCTAACACCCCATAAACCTTCACCAGA
* *
13477016 AGCTTTTAAACCATCTCTAACACCCCATAAACCTTCATC-GAA
1 AACTTTTAAACCATCTCTAACACCCCATAAACCTTCACCAG-A
13477058 AACTTTT-AACCTATCTCTGTAACACCC
1 AACTTTTAAACC-ATCTC--TAACACCC
13477085 TTAACCTATC
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
41 5 0.09
42 44 0.77
44 8 0.14
ACGTcount: A:0.34, C:0.34, G:0.04, T:0.28
Consensus pattern (42 bp):
AACTTTTAAACCATCTCTAACACCCCATAAACCTTCACCAGA
Found at i:13480883 original size:25 final size:25
Alignment explanation
Indices: 13480855--13480949 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
13480845 TTGTACATGT
* *
13480855 ATGCTCACACGAGTTGTGAATCAGA
1 ATGCTCACACGAGCTGTGAATTAGA
*
13480880 ATGCTCACACGAGCAGTGAATTAGA
1 ATGCTCACACGAGCTGTGAATTAGA
13480905 ATGCTCACACGAGCTGTGAATTAGA
1 ATGCTCACACGAGCTGTGAATTAGA
* *
13480930 ATGCTCATACAAGCTGTGAA
1 ATGCTCACACGAGCTGTGAA
13480950 AATGGGCCTG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (25 bp):
ATGCTCACACGAGCTGTGAATTAGA
Found at i:13481704 original size:20 final size:22
Alignment explanation
Indices: 13481676--13481719 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
13481666 AATATTAATC
*
13481676 AACACTCTAAAATTAT-GATTT
1 AACACTCTAAAATCATAGATTT
13481697 AACA-TCTAAAATCATAGATTT
1 AACACTCTAAAATCATAGATTT
13481718 AA
1 AA
13481720 TCAATTGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.34
Consensus pattern (22 bp):
AACACTCTAAAATCATAGATTT
Found at i:13492497 original size:17 final size:17
Alignment explanation
Indices: 13492475--13492509 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
13492465 GTGCACATTA
13492475 TCATTGCATCTTT-ATTT
1 TCATTGCAT-TTTAATTT
13492492 TCATTGCATTTTAATTT
1 TCATTGCATTTTAATTT
13492509 T
1 T
13492510 AGTGCATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.20, C:0.14, G:0.06, T:0.60
Consensus pattern (17 bp):
TCATTGCATTTTAATTT
Found at i:13493063 original size:11 final size:11
Alignment explanation
Indices: 13493047--13493072 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13493037 CCTTATTCAC
13493047 AAAAAAAAGAA
1 AAAAAAAAGAA
13493058 AAAAAAAAGAA
1 AAAAAAAAGAA
13493069 AAAA
1 AAAA
13493073 GGAGACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:13494531 original size:626 final size:626
Alignment explanation
Indices: 13493340--13494591 Score: 2416
Period size: 626 Copynumber: 2.0 Consensus size: 626
13493330 CTTGAGGACA
13493340 AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
1 AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
13493405 TTGGTTAATTTGTCCCCATTTAGTTATCTTTAGCACATATTTTAGCAGTTTTAGTTCAGTAAATT
66 TTGGTTAATTTGTCCCCATTTAGTTATCTTTAGCACATATTTTAGCAGTTTTAGTTCAGTAAATT
13493470 GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATCGACA
131 GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATCGACA
* * * *
13493535 TCGTTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCGCACCTGATAGTTGTCTGAATAA
196 TCATTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCCCACCTGATAGTTGTCCGAACAA
*
13493600 GAAGAGAAATGTATGAGCTGTCTAGTTTGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
261 GAAGAGAAATGTATGAGCTGTCTAGTATGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
13493665 CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
326 CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
13493730 AGGCTTTTTAGGAAGTATTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
391 AGGCTTTTTAGGAAGTATTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
*
13493795 AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCTAGCAAAGAGCCCTAAGTG
456 AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCTAGAAAAGAGCCCTAAGTG
*
13493860 CGACACAGGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTTT
521 CGACACAAGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTTT
13493925 CGTTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
586 CGTTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
13493966 AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
1 AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
*
13494031 TTGGTTAATTTGTCCCCATTTAGTTATCTTTAGCACATATTTTAGCAGTTTTAGTTTAGTAAATT
66 TTGGTTAATTTGTCCCCATTTAGTTATCTTTAGCACATATTTTAGCAGTTTTAGTTCAGTAAATT
13494096 GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATCGACA
131 GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATCGACA
13494161 TCATTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCCCACCTGATAGTTGTCCGAACAA
196 TCATTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCCCACCTGATAGTTGTCCGAACAA
13494226 GAAGAGAAATGTATGAGCTGTCTAGTATGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
261 GAAGAGAAATGTATGAGCTGTCTAGTATGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
13494291 CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
326 CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
13494356 AGGCTTTTTAGGAAGTATTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
391 AGGCTTTTTAGGAAGTATTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
13494421 AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCT-GAAAAAGAGCCCTAAGT
456 AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCTAG-AAAAGAGCCCTAAGT
13494485 GCGACACAAGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTT
520 GCGACACAAGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTT
13494550 TCGTTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
585 TCGTTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
13494592 TTCATGTTTG
Statistics
Matches: 617, Mismatches: 8, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
625 1 0.00
626 616 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (626 bp):
AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
TTGGTTAATTTGTCCCCATTTAGTTATCTTTAGCACATATTTTAGCAGTTTTAGTTCAGTAAATT
GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATCGACA
TCATTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCCCACCTGATAGTTGTCCGAACAA
GAAGAGAAATGTATGAGCTGTCTAGTATGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
AGGCTTTTTAGGAAGTATTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCTAGAAAAGAGCCCTAAGTG
CGACACAAGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTTT
CGTTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
Found at i:13501170 original size:9 final size:10
Alignment explanation
Indices: 13501156--13501198 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
13501146 ATTAGTATAC
13501156 AAAT-AAGTA
1 AAATAAAGTA
*
13501165 AAATAAAATA
1 AAATAAAGTA
13501175 AAATAAAGTAA
1 AAATAAAGT-A
13501186 TAAATAAAGTA
1 -AAATAAAGTA
13501197 AA
1 AA
13501199 GAAAAAACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 14 0.48
11 2 0.07
12 9 0.31
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
AAATAAAGTA
Found at i:13502945 original size:13 final size:13
Alignment explanation
Indices: 13502927--13502952 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13502917 CGAGGCATAA
13502927 CGTATGACATGTG
1 CGTATGACATGTG
13502940 CGTATGACATGTG
1 CGTATGACATGTG
13502953 GTTCTTTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (13 bp):
CGTATGACATGTG
Found at i:13515063 original size:28 final size:28
Alignment explanation
Indices: 13515032--13515260 Score: 171
Period size: 28 Copynumber: 8.2 Consensus size: 28
13515022 AAAAAATGCT
* *
13515032 TTTGTGGTGAACCTATGAAGGGAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* * **
13515060 TTTGTGGCGAACCTCT-AGAAGGATAGAT
1 TTTGTGGTGAACCTCTGA-AAGGAAAGCC
* ** * * * *
13515088 TTTATGGCAAACCTTTGAAAGAAAATCT
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
13515116 TTTGTGGTGAA-CTCCT-AGAAGG-AAGCC
1 TTTGTGGTGAACCT-CTGA-AAGGAAAGCC
* *
13515143 TTTGTGGCGAACCTCTAAAAGGAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* ** *
13515171 TTTGTAGAAAACTTCTGAAAGGAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* *
13515199 TTTGTGGTGAACCTTTGAAAGGAAAGAC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* * *
13515227 TTTATGGTAAACCTCTTAAA-GAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
*
13515254 CTTGTGG
1 TTTGTGG
13515261 CAATCTTAAT
Statistics
Matches: 155, Mismatches: 39, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
27 34 0.22
28 120 0.77
29 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (28 bp):
TTTGTGGTGAACCTCTGAAAGGAAAGCC
Found at i:13515190 original size:83 final size:85
Alignment explanation
Indices: 13515019--13515251 Score: 230
Period size: 83 Copynumber: 2.8 Consensus size: 85
13515009 GAACATACTA
*
13515019 TGAAA-AAAATGCTTTTGTGGTGAA-CCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAGAAGG
1 TGAAAGAAAAT-CTTTTGTGGTGAACCCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGG
* * * *
13515082 ATAGATTTTATGGCAAACCTT
65 AAAGACTTTATAGCAAAACTT
13515103 TGAAAGAAAATCTTTTGTGGTGAACTCCTA-GAA-GG-AAGCCTTTGTGGCGAACCTCTAAAAGG
1 TGAAAGAAAATCTTTTGTGGTGAAC-CCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGG
* *
13515165 AAAGCCTTTGTAG-AAAACTT
65 AAAGACTTTATAGCAAAACTT
* * * * * * * ** *
13515185 CTGAAAGGAAAGCCTTTGTGGTGAA-CCTTTGAAAGGAAAGACTTTATGGTAAACCTCTTAAA-G
1 -TGAAAGAAAATCTTTTGTGGTGAACCCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGG
13515248 AAAG
65 AAAG
13515252 CCCTTGTGGC
Statistics
Matches: 126, Mismatches: 16, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
81 3 0.02
82 9 0.07
83 62 0.49
84 40 0.32
85 8 0.06
86 4 0.03
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (85 bp):
TGAAAGAAAATCTTTTGTGGTGAACCCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGA
AAGACTTTATAGCAAAACTT
Found at i:13515273 original size:27 final size:27
Alignment explanation
Indices: 13515243--13515306 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
13515233 GTAAACCTCT
13515243 TAAAGAAAGCCCTTGTGGCAATCTT-AA
1 TAAAGAAAGCCCTTGTGGCAAT-TTGAA
*
13515270 TAAATAAAGCCCTTGTGGCAATTTGAA
1 TAAAGAAAGCCCTTGTGGCAATTTGAA
*
13515297 TAAAGGAAGC
1 TAAAGAAAGC
13515307 TTTGTGGTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 2 0.06
27 31 0.94
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (27 bp):
TAAAGAAAGCCCTTGTGGCAATTTGAA
Found at i:13517004 original size:31 final size:31
Alignment explanation
Indices: 13516966--13517024 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
13516956 TTCGTCATAA
13516966 TTAATATTTGATTTT-ACAGACCAAAAAATCC
1 TTAATATTTGATTTTGA-AGACCAAAAAATCC
13516997 TTAATATTTGATTTTGAAGACCAAAAAA
1 TTAATATTTGATTTTGAAGACCAAAAAA
13517025 ATCCCTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36
Consensus pattern (31 bp):
TTAATATTTGATTTTGAAGACCAAAAAATCC
Found at i:13526933 original size:28 final size:28
Alignment explanation
Indices: 13526901--13527036 Score: 107
Period size: 28 Copynumber: 4.9 Consensus size: 28
13526891 AAAATAAAGT
*
13526901 CTTTGTGGTAAACCTCTAAAAGGAAAAC
1 CTTTGTGGTAAACCTCTGAAAGGAAAAC
*
13526929 CTTTGTGGTGAAATC-CTGAAAGG-AAAC
1 CTTTGTGGT-AAACCTCTGAAAGGAAAAC
* * *
13526956 CTTTGTGGTGAACCTTTGAAAGGAAAGC
1 CTTTGTGGTAAACCTCTGAAAGGAAAAC
* ** ** * * *
13526984 CTCTACGACAAACTTTTGAAAGGAAAGC
1 CTTTGTGGTAAACCTCTGAAAGGAAAAC
*
13527012 CTTTGTGG-AGAACCTTTGAAAGGAA
1 CTTTGTGGTA-AACCTCTGAAAGGAA
13527037 TGCCCCTGTA
Statistics
Matches: 86, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
26 3 0.03
27 21 0.24
28 58 0.67
29 4 0.05
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.26
Consensus pattern (28 bp):
CTTTGTGGTAAACCTCTGAAAGGAAAAC
Found at i:13526963 original size:27 final size:29
Alignment explanation
Indices: 13526901--13526981 Score: 98
Period size: 27 Copynumber: 2.9 Consensus size: 29
13526891 AAAATAAAGT
13526901 CTTTGTGGT-AAACCTCTAAAAGGAAAAC
1 CTTTGTGGTGAAACCTCTAAAAGGAAAAC
* *
13526929 CTTTGTGGTGAAATC-CTGAAAGG-AAAC
1 CTTTGTGGTGAAACCTCTAAAAGGAAAAC
* *
13526956 CTTTGTGGTG-AACCTTTGAAAGGAAA
1 CTTTGTGGTGAAACCTCTAAAAGGAAA
13526982 GCCTCTACGA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.07
27 21 0.46
28 18 0.39
29 4 0.09
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (29 bp):
CTTTGTGGTGAAACCTCTAAAAGGAAAAC
Found at i:13527052 original size:28 final size:28
Alignment explanation
Indices: 13526998--13527068 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
13526988 ACGACAAACT
** * *
13526998 TTTGAAAGGAAAGCCTTTGTGGAGAACC
1 TTTGAAAGGAAAGCCCCTGTAGAGAACA
* *
13527026 TTTGAAAGGAATGCCCCTGTAGCGAACA
1 TTTGAAAGGAAAGCCCCTGTAGAGAACA
*
13527054 TTTGAATGGAAAGCC
1 TTTGAAAGGAAAGCC
13527069 TCTTTTCATA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (28 bp):
TTTGAAAGGAAAGCCCCTGTAGAGAACA
Found at i:13534091 original size:18 final size:18
Alignment explanation
Indices: 13534036--13534091 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
13534026 TTTAAAATGG
13534036 TAAATGATTAATTACACT
1 TAAATGATTAATTACACT
* * *
13534054 TAAAT--TAAATAAAAC-
1 TAAATGATTAATTACACT
*
13534069 AAAATGATTAATTACACT
1 TAAATGATTAATTACACT
13534087 TAAAT
1 TAAAT
13534092 TAATTTTCTT
Statistics
Matches: 27, Mismatches: 8, Indels: 6
0.66 0.20 0.15
Matches are distributed among these distances:
15 4 0.15
16 7 0.26
17 7 0.26
18 9 0.33
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.34
Consensus pattern (18 bp):
TAAATGATTAATTACACT
Found at i:13544816 original size:47 final size:49
Alignment explanation
Indices: 13544693--13544858 Score: 153
Period size: 47 Copynumber: 3.4 Consensus size: 49
13544683 ACTCATATTT
* * * * *
13544693 TTTTTATATATTTTATAA--TTTATATACATATCTATATATATACATATA
1 TTTTTATAT-TTTTATAATTTTTATATACACATATATATACATATATATC
* * * * * * *
13544741 TTTTTTTCTTCTCACGAATATATATATACACATACT-TATACATATATAT-
1 TTTTTATATTTTTA-TAATTTTTATATACACATA-TATATACATATATATC
*
13544790 TTTTTATA-TTTTATAATTTTTATATACATATATATATACATATATATC
1 TTTTTATATTTTTATAATTTTTATATACACATATATATACATATATATC
13544838 TTTTTATATTTTTATAATTTT
1 TTTTTATATTTTTATAATTTT
13544859 ATTCATTTTC
Statistics
Matches: 93, Mismatches: 18, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
46 1 0.01
47 31 0.33
48 20 0.22
49 18 0.19
50 22 0.24
51 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.01, T:0.55
Consensus pattern (49 bp):
TTTTTATATTTTTATAATTTTTATATACACATATATATACATATATATC
Found at i:13546694 original size:13 final size:14
Alignment explanation
Indices: 13546654--13546698 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
13546644 AAATATATCT
*
13546654 TAATTAAAAATAGAA
1 TAATTATAAATA-AA
13546669 TAA--ATAAATAAA
1 TAATTATAAATAAA
13546681 TAATTATAAA-AAA
1 TAATTATAAATAAA
13546694 TAATT
1 TAATT
13546699 TCGAGTTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 5 0.19
13 14 0.52
14 5 0.19
15 3 0.11
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (14 bp):
TAATTATAAATAAA
Found at i:13547455 original size:21 final size:21
Alignment explanation
Indices: 13547434--13547479 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
13547424 GCAAATCTTA
13547434 TATATATTACTAAAATATTTAT
1 TATATATTA-TAAAATATTTAT
* * *
13547456 TTTATTTTATAAAATATTAAT
1 TATATATTATAAAATATTTAT
13547477 TAT
1 TAT
13547480 TGAATATTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
TATATATTATAAAATATTTAT
Found at i:13547547 original size:14 final size:15
Alignment explanation
Indices: 13547521--13547549 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
13547511 TACGAAAATA
13547521 TTAATATAAATATTT
1 TTAATATAAATATTT
13547536 TTAATA-AAATATTT
1 TTAATATAAATATTT
13547550 AAAATATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAATATAAATATTT
Found at i:13548383 original size:19 final size:19
Alignment explanation
Indices: 13548359--13548399 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
13548349 CGTATACTTG
13548359 AATAAACAAGATGGAATAC
1 AATAAACAAGATGGAATAC
* *
13548378 AATAAAGAAGGTGGAATAC
1 AATAAACAAGATGGAATAC
13548397 AAT
1 AAT
13548400 TGATATTGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.56, C:0.07, G:0.20, T:0.17
Consensus pattern (19 bp):
AATAAACAAGATGGAATAC
Found at i:13550518 original size:26 final size:26
Alignment explanation
Indices: 13550489--13550548 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
13550479 TTCTTCATTT
13550489 GCCACACA-ACCTCCATTTCTTAAATC
1 GCCACA-AGACCTCCATTTCTTAAATC
* * *
13550515 GCCACTAAGGCTTCCATTTCTTATATC
1 GCCAC-AAGACCTCCATTTCTTAAATC
13550542 GCCACAA
1 GCCACAA
13550549 AGGCTTCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.28, C:0.35, G:0.08, T:0.28
Consensus pattern (26 bp):
GCCACAAGACCTCCATTTCTTAAATC
Found at i:13550535 original size:27 final size:27
Alignment explanation
Indices: 13550500--13550564 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
13550490 CCACACAACC
*
13550500 TCCATTTCTTAAATCGCCACTAAGGCT
1 TCCATTTCTTAAATCGCCACAAAGGCT
*
13550527 TCCATTTCTTATATCGCCACAAAGGCT
1 TCCATTTCTTAAATCGCCACAAAGGCT
*
13550554 TCAATTTCTTA
1 TCCATTTCTTA
13550565 GATCACCATA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (27 bp):
TCCATTTCTTAAATCGCCACAAAGGCT
Found at i:13561862 original size:22 final size:22
Alignment explanation
Indices: 13561834--13561888 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
13561824 TATGCACTAT
*
13561834 TAAACAGAGAGCACTAAAGTGC
1 TAAACAGAGAGCACGAAAGTGC
* *
13561856 TATACAGAGAGCACGAATGTGC
1 TAAACAGAGAGCACGAAAGTGC
13561878 TAAACAGAGAG
1 TAAACAGAGAG
13561889 TGTGCTAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.44, C:0.16, G:0.25, T:0.15
Consensus pattern (22 bp):
TAAACAGAGAGCACGAAAGTGC
Found at i:13561925 original size:25 final size:25
Alignment explanation
Indices: 13561890--13562010 Score: 206
Period size: 25 Copynumber: 4.8 Consensus size: 25
13561880 AACAGAGAGT
13561890 GTGCTAGTAATCAGAGAGCACTGAC
1 GTGCTAGTAATCAGAGAGCACTGAC
* *
13561915 GTGCTAATAATCAGAGAGCACTTAC
1 GTGCTAGTAATCAGAGAGCACTGAC
*
13561940 GTGCTTGTAATCAGAGAGCACTGAC
1 GTGCTAGTAATCAGAGAGCACTGAC
*
13561965 GTGCTAGTAATCAGAGAGCACTTAC
1 GTGCTAGTAATCAGAGAGCACTGAC
13561990 GTGCTAGTAATCAGAGAGCAC
1 GTGCTAGTAATCAGAGAGCAC
13562011 GCTAAACTCC
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 89 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (25 bp):
GTGCTAGTAATCAGAGAGCACTGAC
Found at i:13569376 original size:57 final size:56
Alignment explanation
Indices: 13569314--13569436 Score: 158
Period size: 57 Copynumber: 2.2 Consensus size: 56
13569304 GATAGTTAAA
* *
13569314 ATTTTTTTGT-ATCACTGTGCTATATGGTGGCACCGATGTCAGATAGTTAAAAAAGTT
1 ATTTTTTTGTGCT-ACTATGCTATATGGTGGCACCGATGTCAGATAGTTAAAAAA-TT
* * * *
13569371 ATTTTTTTGTGCTACTATGTTGTCTGGTGGCACTGATGTCAGATAGTTAAAAAATT
1 ATTTTTTTGTGCTACTATGCTATATGGTGGCACCGATGTCAGATAGTTAAAAAATT
13569427 ATTCTTTTTG
1 ATT-TTTTTG
13569437 GGTGTCGCCG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
56 5 0.09
57 52 0.90
58 1 0.02
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.43
Consensus pattern (56 bp):
ATTTTTTTGTGCTACTATGCTATATGGTGGCACCGATGTCAGATAGTTAAAAAATT
Found at i:13572685 original size:11 final size:12
Alignment explanation
Indices: 13572664--13572712 Score: 50
Period size: 11 Copynumber: 4.3 Consensus size: 12
13572654 TTAAATTTCC
13572664 TTTCTCTTATTT
1 TTTCTCTTATTT
13572676 TTTC-CTTATTT
1 TTTCTCTTATTT
* *
13572687 TTTTTCTT-GTT
1 TTTCTCTTATTT
*
13572698 TTTCT-TTCTTT
1 TTTCTCTTATTT
13572709 TTTC
1 TTTC
13572713 CCCCCGATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 2 0.06
11 22 0.71
12 7 0.23
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (12 bp):
TTTCTCTTATTT
Found at i:13573944 original size:45 final size:41
Alignment explanation
Indices: 13573885--13573994 Score: 107
Period size: 45 Copynumber: 2.6 Consensus size: 41
13573875 TTTGGTTCGC
* *
13573885 TGTATTGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
13573927 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
13573970 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
13573995 TAATGGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 21 0.38
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:13574161 original size:18 final size:17
Alignment explanation
Indices: 13574140--13574174 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13574130 TTATTATTAA
*
13574140 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
13574158 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13574175 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13574433 original size:90 final size:90
Alignment explanation
Indices: 13574311--13574517 Score: 299
Period size: 90 Copynumber: 2.3 Consensus size: 90
13574301 TAATTATAAC
* * * * *
13574311 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
13574375 TAATATATAATTTCATAAAATTCTTGA
64 TAATATATAATTTCATAAAATTCTTAA
* *
13574402 TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGTG
1 TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
13574467 ATATATAATTTCATAAAATTCTTAA
66 ATATATAATTTCATAAAATTCTTAA
13574492 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
13574518 CTAAAATCAA
Statistics
Matches: 105, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
90 73 0.70
91 16 0.15
92 16 0.15
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:13574492 original size:47 final size:46
Alignment explanation
Indices: 13574361--13574498 Score: 126
Period size: 47 Copynumber: 3.0 Consensus size: 46
13574351 TAATTATTAC
* *
13574361 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAAT-ATGATATATAATTTCATAAAATTCTTAATAATAA
* * ** *
13574408 AT-T--TCTT-ATATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAAT-TTAATATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
13574451 ATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATA-TGATATATAATTTCATAAAATTCTTAATAATAA
13574498 A
1 A
13574499 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 12, Indels: 20
0.68 0.12 0.20
Matches are distributed among these distances:
43 18 0.26
44 10 0.14
45 10 0.14
46 11 0.16
47 20 0.29
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.43
Consensus pattern (46 bp):
ATATAATTTAATATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:13577600 original size:18 final size:18
Alignment explanation
Indices: 13577577--13577618 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
13577567 GACCTAAAAT
13577577 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
13577595 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
13577613 TAATTG
1 TAATTG
13577619 ACCTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (18 bp):
TAATTGTTGGTGTATGTA
Found at i:13577748 original size:37 final size:37
Alignment explanation
Indices: 13577693--13577779 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
13577683 GTATAAATAT
* * *
13577693 ATTGATTAGTTCATTAAAGCATGTTCAAAGTCCT-CAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGT-CTGAAC
*
13577730 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTCTGAAC
13577767 ATTGATTAGTTTA
1 ATTGATTAGTTTA
13577780 TTTATTTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.02
37 44 0.98
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.39
Consensus pattern (37 bp):
ATTGATTAGTTTAATAAAGCATGTTCAAAGTCTGAAC
Found at i:13579035 original size:71 final size:69
Alignment explanation
Indices: 13578898--13579038 Score: 194
Period size: 71 Copynumber: 2.0 Consensus size: 69
13578888 ATAAAGATCT
* *
13578898 AGTTTCATATTCTACTGACTAACAAATCAAGAACAATTTCCAGCAGACAATCAAAACAACTGCCA
1 AGTTTCATATTCTACTCACTAACAAATAAAGAACAATTTCCAGCAGACAATCAAAACAACTGCCA
13578963 GAAC
66 GAAC
* * * *
13578967 AGTTTCATCTTCTACTCACTAACAAATTAAAATAACATTTTCCAGCAGACTATCAAAACAA-TGT
1 AGTTTCATATTCTACTCACTAACAAA-T-AAAGAACAATTTCCAGCAGACAATCAAAACAACTG-
13579031 CCAGAAC
63 CCAGAAC
13579038 A
1 A
13579039 AACCAACAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
69 24 0.38
70 3 0.05
71 36 0.57
ACGTcount: A:0.43, C:0.24, G:0.09, T:0.25
Consensus pattern (69 bp):
AGTTTCATATTCTACTCACTAACAAATAAAGAACAATTTCCAGCAGACAATCAAAACAACTGCCA
GAAC
Found at i:13580144 original size:36 final size:37
Alignment explanation
Indices: 13580051--13580182 Score: 160
Period size: 36 Copynumber: 3.6 Consensus size: 37
13580041 GCAAATCGAC
* *
13580051 AGAAAC-TGTGAGCAAATCGGCCGAAAAAGAAAAGAAA
1 AGAAACATGGGAGCAAATCGGCAG-AAAAGAAAAGAAA
* *
13580088 AGAAACGAGGGGAGCAAATCGGTAGAAAAGAAAAGAAA
1 AGAAAC-ATGGGAGCAAATCGGCAGAAAAGAAAAGAAA
* *
13580126 ATAAAC-TGGGAGCAAATCGGCAGAAAAGAAAAGCAA
1 AGAAACATGGGAGCAAATCGGCAGAAAAGAAAAGAAA
* *
13580162 AGAAACAAGGAAGCAAATCGG
1 AGAAACATGGGAGCAAATCGG
13580183 ATGAAGGTAG
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
36 32 0.40
37 18 0.22
38 18 0.22
39 13 0.16
ACGTcount: A:0.54, C:0.12, G:0.27, T:0.07
Consensus pattern (37 bp):
AGAAACATGGGAGCAAATCGGCAGAAAAGAAAAGAAA
Found at i:13581278 original size:20 final size:19
Alignment explanation
Indices: 13581238--13581282 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
13581228 CAAGAATATC
* *
13581238 AAATAAACAAGAATATGAAA
1 AAATAAACAAAAAAAT-AAA
*
13581258 ACATAAACAAAAAAATAAA
1 AAATAAACAAAAAAATAAA
13581277 AAATAA
1 AAATAA
13581283 GAAAGGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.13
Consensus pattern (19 bp):
AAATAAACAAAAAAATAAA
Found at i:13581668 original size:10 final size:10
Alignment explanation
Indices: 13581622--13581661 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
13581612 GTATATGGAA
13581622 ATAAATATAT
1 ATAAATATAT
13581632 ATAAATATAT
1 ATAAATATAT
* *
13581642 ACATATATAT
1 ATAAATATAT
13581652 ATAAATATAT
1 ATAAATATAT
13581662 GAAAATAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (10 bp):
ATAAATATAT
Found at i:13583303 original size:40 final size:44
Alignment explanation
Indices: 13583148--13583306 Score: 132
Period size: 44 Copynumber: 3.7 Consensus size: 44
13583138 CGGCTTTAAC
* * * * *
13583148 CTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCAT-CTTCAGT
1 CTGCTCCACTGCAACTTCAGGAAGATAAGACTAG-CATGC-TGAGT
* * * * *
13583193 CTAC-CTTACTGCAACTTCAGGAGGATAAGACTTGCTTGCTGAGT
1 CTGCTC-CACTGCAACTTCAGGAAGATAAGACTAGCATGCTGAGT
*
13583237 CTGCTCCACTGCAACTTCAGGGAGATAAGACTAG-ATG-TGA-T
1 CTGCTCCACTGCAACTTCAGGAAGATAAGACTAGCATGCTGAGT
* *
13583278 CTGCT-CTCTGCAACTTCAGAAAGATAAGA
1 CTGCTCCACTGCAACTTCAGGAAGATAAGA
13583307 TCAAAGGTTT
Statistics
Matches: 94, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
40 21 0.22
41 6 0.06
42 3 0.03
43 2 0.02
44 34 0.36
45 28 0.30
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGAAGATAAGACTAGCATGCTGAGT
Found at i:13583513 original size:44 final size:44
Alignment explanation
Indices: 13583373--13583910 Score: 170
Period size: 44 Copynumber: 12.2 Consensus size: 44
13583363 CTGCAACTTC
* * * * ** * *
13583373 AGGGAGATAAGATTTGCCATCTTCAACCTACTCTGCTGCTGCTC
1 AGGGAGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT
** ** * *
13583417 AGGGAGATAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT
1 AGGGAGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTT
* * *
13583461 -GGAAAGATAAGATTTGCCGTCTTTGATCTGCTCAACTACTGCTT
1 AGG-GAGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT
* * ** * * * * * *
13583505 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTC
1 AGGGAGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT
* * * * *
13583549 AGGGAGACAAGGCTTTG-TGGCTTAAATCTGCTTCCCACTA-T-CTT
1 AGGGAGATAA-GATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTT
* * *
13583593 -GGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTT
1 AGG-GAGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT
* * ** * * * ** * *
13583637 AGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTGCTC
1 AGGGAGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT
* ** ** * * *
13583681 AGGGAGATGAGGCTTGGTGGCTTAAATTTGCTTCCCACTA-T-CTT
1 AGGGAGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTT
* * *
13583725 -GGAAAGATAAGATTTTCCGTCTTTGATCTGCTCCACTACTGCTT
1 AGG-GAGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT
* * ** * * * * * *
13583769 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTC
1 AGGGAGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT
* * * *
13583813 AGGGAGACAAGGCTTTG-TGGC-TTATATCTGCTTCCCACTA-T-CTT
1 AGGGAGATAA-GATTTGCCGTCTTTA-ATCTGC-T-CCACTACTGCTT
* * *
13583857 -GGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCTCTACTGCTT
1 AGG-GAGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT
13583901 AGGGAGATAA
1 AGGGAGATAA
13583911 TATCTACAAT
Statistics
Matches: 334, Mismatches: 130, Indels: 60
0.64 0.25 0.11
Matches are distributed among these distances:
42 22 0.07
43 28 0.08
44 246 0.74
45 24 0.07
46 14 0.04
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (44 bp):
AGGGAGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT
Found at i:13583614 original size:132 final size:132
Alignment explanation
Indices: 13583373--13583963 Score: 993
Period size: 132 Copynumber: 4.5 Consensus size: 132
13583363 CTGCAACTTC
* * * * * *
13583373 AGGGAGATAAGATTTGCCATCTTCAACCTACTCTGCTGCTGCTCAGGGAGATAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
*
13583438 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCAACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
13583503 TT
131 TT
*
13583505 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
*
13583570 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
13583635 TT
131 TT
* * **
13583637 AGGGAGATAAGATCTACAATCTTCAACCTACTCTGCTGCTGCTCAGGGAGATGAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
* *
13583702 TTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTTCCGTCTTTGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
13583767 TT
131 TT
*
13583769 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
* *
13583834 TTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCTCTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
13583899 TT
131 TT
* * *
13583901 AGGGAGATAATATCTACAATCTTCAACCTTCTCCACTGCTGCTCAGAGAGACAAGGCTTGGTG
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
13583964 TTTCACCGGT
Statistics
Matches: 429, Mismatches: 30, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 429 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (132 bp):
AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
TT
Found at i:13595934 original size:20 final size:19
Alignment explanation
Indices: 13595894--13595938 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
13595884 CAAGAATATC
* *
13595894 AAATAAACAAGAATATGAAA
1 AAATAAACAAAAAAAT-AAA
*
13595914 ACATAAACAAAAAAATAAA
1 AAATAAACAAAAAAATAAA
13595933 AAATAA
1 AAATAA
13595939 GAAAGGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.13
Consensus pattern (19 bp):
AAATAAACAAAAAAATAAA
Found at i:13600745 original size:45 final size:45
Alignment explanation
Indices: 13600650--13600738 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
13600640 AAAATGGTAG
*
13600650 AGAAAGCTAACCTTTTCTAATGATGTTTCTATGATCGAAAAAACA
1 AGAAAGCTAACCTTTTCTAATGACGTTTCTATGATCGAAAAAACA
*
13600695 AGAAAGCTAACTTTTTCTAATGACGTTTCTATGATCGAAAAAAC
1 AGAAAGCTAACCTTTTCTAATGACGTTTCTATGATCGAAAAAAC
13600739 TTGAAAGTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (45 bp):
AGAAAGCTAACCTTTTCTAATGACGTTTCTATGATCGAAAAAACA
Found at i:13613457 original size:40 final size:40
Alignment explanation
Indices: 13613374--13613676 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
13613364 TTGAATGCTG
* * * * * *
13613374 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
13613414 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
13613454 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
13613494 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
13613534 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
13613574 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
13613614 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
13613653 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
13613677 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:13621431 original size:40 final size:40
Alignment explanation
Indices: 13621348--13621650 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
13621338 TTGAATGCTG
* * * * * *
13621348 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
13621388 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
13621428 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
13621468 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
13621508 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
13621548 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
13621588 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
13621627 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
13621651 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:13632237 original size:11 final size:11
Alignment explanation
Indices: 13632221--13632246 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13632211 ACTTGAACGG
13632221 AAATAAAAATA
1 AAATAAAAATA
13632232 AAATAAAAATA
1 AAATAAAAATA
13632243 AAAT
1 AAAT
13632247 TACATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:13637379 original size:17 final size:18
Alignment explanation
Indices: 13637354--13637387 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
13637344 CTTGGATTAA
*
13637354 ATTATTAAATT-AAAATT
1 ATTAATAAATTGAAAATT
13637371 ATTAATAAATTGAAAAT
1 ATTAATAAATTGAAAAT
13637388 CGCATATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAATAAATTGAAAATT
Found at i:13637447 original size:23 final size:23
Alignment explanation
Indices: 13637418--13637462 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
13637408 GGGTCAGTCA
13637418 AAAAAAGGTAAGTTAATTAATCC
1 AAAAAAGGTAAGTTAATTAATCC
*
13637441 AAAAAAGGTATGTTAATTAATC
1 AAAAAAGGTAAGTTAATTAATC
13637463 AAAGGTCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.29
Consensus pattern (23 bp):
AAAAAAGGTAAGTTAATTAATCC
Found at i:13647899 original size:43 final size:43
Alignment explanation
Indices: 13647785--13647913 Score: 133
Period size: 43 Copynumber: 3.0 Consensus size: 43
13647775 AACTCATACA
*
13647785 ATGCCAACGTCCCAGACGTGGTCTT--ACATGCAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACATG-AA-CACATATCG
* * *
13647828 ATGCC-ACTATCCTAGACAGGGTCTTACACATGAACACA-ACTCG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACATGAACACATA-TCG
*
13647871 ATGCCAACGTCCCCGACATGGTCTTACACGAT-AACACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACAC-ATGAACACATATCG
13647914 GAAATCCTAT
Statistics
Matches: 71, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
42 3 0.04
43 56 0.79
44 7 0.10
45 5 0.07
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACATGAACACATATCG
Found at i:13649818 original size:53 final size:53
Alignment explanation
Indices: 13649752--13649855 Score: 208
Period size: 53 Copynumber: 2.0 Consensus size: 53
13649742 CGCTATTGAC
13649752 AGCGTCGCTAACATTTATGGCGTTTTTTAAAATAAACGTCGCTAAAGGTCAAT
1 AGCGTCGCTAACATTTATGGCGTTTTTTAAAATAAACGTCGCTAAAGGTCAAT
13649805 AGCGTCGCTAACATTTATGGCGTTTTTTAAAATAAACGTCGCTAAAGGTCA
1 AGCGTCGCTAACATTTATGGCGTTTTTTAAAATAAACGTCGCTAAAGGTCA
13649856 TGACCTTTAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (53 bp):
AGCGTCGCTAACATTTATGGCGTTTTTTAAAATAAACGTCGCTAAAGGTCAAT
Found at i:13649926 original size:43 final size:43
Alignment explanation
Indices: 13649838--13650002 Score: 181
Period size: 43 Copynumber: 3.9 Consensus size: 43
13649828 TTTTTAAAAT
* * **
13649838 AAACGTCGCTAAAGGTCATGACCTTTAGCGGCGCTTTCCTTAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTTCCCCAC
* * * *
13649881 AAACACCGCTATAGGCCATAACCTTTAGCGACGCTTTCCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTTCCCCAC
* * * *
13649924 AAACGTCGCTAAAGATCATGACCTTTAGCGACACTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTTCCCCAC
* *
13649967 AAACGCCGCTATAAGAT--TGACTTTTAGCGACGCTTT
1 AAACGCCGCTA-AAGGTCATGACCTTTAGCGACGCTTT
13650003 GTCACAAACG
Statistics
Matches: 102, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
42 17 0.17
43 80 0.78
44 5 0.05
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGACCTTTAGCGACGCTTTCCCCAC
Found at i:13653710 original size:19 final size:18
Alignment explanation
Indices: 13653688--13653732 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
13653678 AATTATAAAA
13653688 TTTAGTTTTT-TATTTCTAT
1 TTTA-TTTTTGTATTT-TAT
13653707 TTTATTTTTGTATTTTATT
1 TTTATTTTTGTATTTTA-T
13653726 TTTATTT
1 TTTATTT
13653733 CTTATAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (18 bp):
TTTATTTTTGTATTTTAT
Found at i:13653720 original size:13 final size:13
Alignment explanation
Indices: 13653704--13653728 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13653694 TTTTTATTTC
13653704 TATTTTATTTTTG
1 TATTTTATTTTTG
13653717 TATTTTATTTTT
1 TATTTTATTTTT
13653729 ATTTCTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (13 bp):
TATTTTATTTTTG
Found at i:13654145 original size:21 final size:23
Alignment explanation
Indices: 13654103--13654147 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
13654093 CCGACCCTTG
*
13654103 ACTCTCTAAACCCTAAATCCCTA
1 ACTCTCTAAACCCTAAACCCCTA
*
13654126 ACTCT-TAACCCCT-AACCCCTA
1 ACTCTCTAAACCCTAAACCCCTA
13654147 A
1 A
13654148 ACCTTAAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 7 0.35
23 5 0.25
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.24
Consensus pattern (23 bp):
ACTCTCTAAACCCTAAACCCCTA
Found at i:13654201 original size:15 final size:15
Alignment explanation
Indices: 13654166--13654212 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
13654156 TCCCAACCCT
*
13654166 TAAAT-CATAATTCC
1 TAAATCCATAATCCC
13654180 T-AATCCATAATCCC
1 TAAATCCATAATCCC
*
13654194 TAAATCCATACTCCC
1 TAAATCCATAATCCC
13654209 TAAA
1 TAAA
13654213 CCTTACACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 3 0.10
14 10 0.34
15 16 0.55
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:13654585 original size:19 final size:19
Alignment explanation
Indices: 13654542--13654579 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
13654532 ATTGAATTTT
13654542 AATT-AATATAAATAAACA
1 AATTAAATATAAATAAACA
13654560 AATTAAATAGTAAATAAACA
1 AATTAAATA-TAAATAAACA
13654580 GATAAAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (19 bp):
AATTAAATATAAATAAACA
Found at i:13654587 original size:20 final size:19
Alignment explanation
Indices: 13654546--13654587 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
13654536 AATTTTAATT
*
13654546 AATATAAATAAACAAATTA
1 AATATAAATAAACAAATAA
*
13654565 AATAGTAAATAAACAGATAA
1 AATA-TAAATAAACAAATAA
13654585 AAT
1 AAT
13654588 GTTTTTACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.24
Consensus pattern (19 bp):
AATATAAATAAACAAATAA
Found at i:13654654 original size:41 final size:40
Alignment explanation
Indices: 13654597--13654792 Score: 248
Period size: 41 Copynumber: 4.8 Consensus size: 40
13654587 TGTTTTTACA
* * * *
13654597 GCGCTTTTTCAGAAACGCCGCTAAAGCTCCAAGCATTAGAG
1 GCGC-TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
* *
13654638 GCGCTTTTCCAAAAACGTCGCTAAAGCCCCGAGCATTAGTG
1 GCGCTTTT-CAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
*
13654679 GTGCCTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
1 GCG-CTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
* *
13654720 GCGCCTTTTTAAAAACGCCGCTAAAGCCCCGAGCCTTAGCG
1 GCG-CTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
* *
13654761 GCGCCTTCTCAAAAATGCCGCTAAAGCCCCGA
1 GCG-CTTTTCAAAAACGCCGCTAAAGCCCCGA
13654793 AAGGTCAAAA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
40 4 0.03
41 130 0.94
42 5 0.04
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.20
Consensus pattern (40 bp):
GCGCTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
Found at i:13664770 original size:23 final size:25
Alignment explanation
Indices: 13664718--13664770 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
13664708 TAATATACTT
* * *
13664718 AGCATATCACATATTTACTCAATTC
1 AGCATAACAAATATTTACTCAATTA
13664743 A-CATAACAAATATTTA-TCAA-TA
1 AGCATAACAAATATTTACTCAATTA
13664765 AGCATA
1 AGCATA
13664771 CACCGAACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 2 0.08
23 8 0.33
24 13 0.54
25 1 0.04
ACGTcount: A:0.45, C:0.19, G:0.04, T:0.32
Consensus pattern (25 bp):
AGCATAACAAATATTTACTCAATTA
Found at i:13668681 original size:19 final size:19
Alignment explanation
Indices: 13668657--13668705 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
13668647 GTCGTGTTTC
13668657 CAGCCCGTGTGAAATGGCA
1 CAGCCCGTGTGAAATGGCA
* *
13668676 CAGCCCTTGCGAAATGGCA
1 CAGCCCGTGTGAAATGGCA
13668695 CAGCCCGTGTG
1 CAGCCCGTGTG
13668706 GCTCCTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.16
Consensus pattern (19 bp):
CAGCCCGTGTGAAATGGCA
Found at i:13669974 original size:33 final size:31
Alignment explanation
Indices: 13669846--13669974 Score: 95
Period size: 33 Copynumber: 4.1 Consensus size: 31
13669836 TTAAAATTAA
*
13669846 AAAATTAAAAAA-A-TTAAAAATTTATTTCT
1 AAAATTAAAAAATATTTAAAACTTTATTTCT
* * * *
13669875 AATATTTAAAAGTA-TTAAATATATATTATTTCT
1 AAAATTAAAAAATATTTAAA-A-CT-TTATTTCT
* * *
13669908 AAAATTAAAAACTATTTAAAACTCTATTCCT
1 AAAATTAAAAAATATTTAAAACTTTATTTCT
*
13669939 AAAA-TAAAAAATAATTTTTTAAACTTTATTTCT
1 AAAATTAAAAAAT-A--TTTAAAACTTTATTTCT
13669972 AAA
1 AAA
13669975 CTTATTACCT
Statistics
Matches: 79, Mismatches: 13, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
29 9 0.11
30 13 0.16
31 12 0.15
32 3 0.04
33 37 0.47
34 5 0.06
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.41
Consensus pattern (31 bp):
AAAATTAAAAAATATTTAAAACTTTATTTCT
Found at i:13672082 original size:28 final size:28
Alignment explanation
Indices: 13671984--13672080 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
13671974 AAAAATAAAA
*
13671984 ATTTACCAAAACATTACAACTTTTTTTT
1 ATTTACCAAAATATTACAACTTTTTTTT
13672012 ATTTACCAAAATATTACAA-TTTTTTTT
1 ATTTACCAAAATATTACAACTTTTTTTT
13672039 ATTTACCAAAATATATA-AACTTTTTTTT
1 ATTTACCAAAATAT-TACAACTTTTTTTT
13672067 ATTTACCAAAATAT
1 ATTTACCAAAATAT
13672081 ATCAAAAAAA
Statistics
Matches: 66, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
27 24 0.36
28 42 0.64
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (28 bp):
ATTTACCAAAATATTACAACTTTTTTTT
Found at i:13672673 original size:19 final size:18
Alignment explanation
Indices: 13672649--13672709 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
13672639 TCTAATTAAG
13672649 TAATAATTCTATTTTAATT
1 TAATAA-TCTATTTTAATT
* * *
13672668 TAATAAACTATTCTCATT
1 TAATAATCTATTTTAATT
* *
13672686 TAATAACTATATTTTAAAT
1 TAATAA-TCTATTTTAATT
13672705 TAATA
1 TAATA
13672710 GAAATATCAG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (18 bp):
TAATAATCTATTTTAATT
Found at i:13672678 original size:18 final size:18
Alignment explanation
Indices: 13672657--13672709 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
13672647 AGTAATAATT
13672657 CTATTTTAATTTAATAAA
1 CTATTTTAATTTAATAAA
* *
13672675 CTATTCTCATTTAAT-AA
1 CTATTTTAATTTAATAAA
*
13672692 CTATATTTTAAATTAATA
1 C--TATTTTAATTTAATA
13672710 GAAATATCAG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.11
18 13 0.48
19 11 0.41
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
CTATTTTAATTTAATAAA
Found at i:13673236 original size:27 final size:27
Alignment explanation
Indices: 13673200--13673283 Score: 143
Period size: 27 Copynumber: 3.1 Consensus size: 27
13673190 TTTTAGTCCT
13673200 TTGGCA-CATTGGTGCCGCCAATGGCA
1 TTGGCACCATTGGTGCCGCCAATGGCA
*
13673226 TTGGCACCATTGGTGCTGCCAATGGCA
1 TTGGCACCATTGGTGCCGCCAATGGCA
*
13673253 TTGGCACCTTTGGTGCCGCCAATGGCA
1 TTGGCACCATTGGTGCCGCCAATGGCA
13673280 TTGG
1 TTGG
13673284 GGTGATCAGG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 6 0.11
27 48 0.89
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.26
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATGGCA
Found at i:13673377 original size:29 final size:29
Alignment explanation
Indices: 13673317--13673416 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
13673307 TTTTTTTGAT
13673317 ATATTTTGGTAAAT-AAAAAAAAGTT-TA
1 ATATTTTGGTAAATAAAAAAAAAGTTGTA
*
13673344 TATATTTTAGTAAATAAAAAAAAAGTTGTA
1 -ATATTTTGGTAAATAAAAAAAAAGTTGTA
13673374 ATATTTTGGTAAATAAAAAAAAAGTTGTA
1 ATATTTTGGTAAATAAAAAAAAAGTTGTA
*
13673403 ATGTTTTGGTAAAT
1 ATATTTTGGTAAAT
13673417 TTTTATTTTT
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
28 13 0.19
29 52 0.78
30 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (29 bp):
ATATTTTGGTAAATAAAAAAAAAGTTGTA
Found at i:13676476 original size:28 final size:30
Alignment explanation
Indices: 13676424--13676480 Score: 82
Period size: 28 Copynumber: 1.9 Consensus size: 30
13676414 GGTTTTTTTA
*
13676424 TAAAATCAAAAACTATATTCTAATTAAAAAT
1 TAAAATCAAAAAC-ATATTATAATTAAAAAT
13676455 TAAAA-CAAAAA-ATATTATAATTAAAA
1 TAAAATCAAAAACATATTATAATTAAAA
13676481 GTTTTAGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 14 0.56
30 6 0.24
31 5 0.20
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (30 bp):
TAAAATCAAAAACATATTATAATTAAAAAT
Found at i:13683319 original size:18 final size:20
Alignment explanation
Indices: 13683278--13683324 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
13683268 GTATGTGTAC
13683278 ATATATAAGGTATATAAATA
1 ATATATAAGGTATATAAATA
13683298 ATATATAA-GTATGA-AAATA
1 ATATATAAGGTAT-ATAAATA
13683317 TATATATA
1 -ATATATA
13683325 CAAATAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
ATATATAAGGTATATAAATA
Found at i:13683377 original size:24 final size:23
Alignment explanation
Indices: 13683344--13683389 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
13683334 TTAAAAAAAT
* *
13683344 ATGTACGTATGTATATATGACAAA
1 ATGTAAGTATGTACATAT-ACAAA
13683368 ATGTAAGTATGTACATATACAA
1 ATGTAAGTATGTACATATACAA
13683390 CAAAATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (23 bp):
ATGTAAGTATGTACATATACAAA
Found at i:13685038 original size:127 final size:127
Alignment explanation
Indices: 13684834--13685270 Score: 676
Period size: 127 Copynumber: 3.4 Consensus size: 127
13684824 CTATAACTTC
* * * * * * * *
13684834 AGGGAGATAAGGCTGGATGCGATCTGCTCTACTGCTACTTCAGAGAGATAAGATCTTTGTTTTTA
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGTGGTTTTA
** * *
13684899 ATCCGCTCCACTGTGACTTCAGAGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
65 ATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
*
13684962 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTGGTTTTAA
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
*
13685027 TCCGCTCCACTGCAACTTTAGGGAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
66 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
* * * *
13685089 AGGGAGATAAGACTTGATGTGATCTACTCCACTATTACTTAGGGAGATAAGATCTGTGGTTTTAA
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
13685154 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
66 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
* * *
13685216 AGGGAGATAAGACTTGGTGCGATCTGCTCCACTACTGCTTAAGGAGATAGGATCT
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
13685271 ACCATCTTTG
Statistics
Matches: 282, Mismatches: 27, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
127 248 0.88
128 34 0.12
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.32
Consensus pattern (127 bp):
AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
Found at i:13685053 original size:44 final size:44
Alignment explanation
Indices: 13684999--13685181 Score: 164
Period size: 44 Copynumber: 4.3 Consensus size: 44
13684989 TCCACTACTG
*
13684999 TTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAAC
1 TTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAAC
* ** * **
13685043 TTTAGGGAGATAAGAT-TG-GTTTCTTCTGTCTGCTCCACTACTGC
1 TTTAGGGAGATAAGATCTGTGGTT-TT-AATCCGCTCCACTACAAC
* * * ** **
13685087 -TTAGGGAGATAAGA-CT-T-GATGTGATCTACTCCACTATTAC
1 TTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAAC
*
13685127 -TTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAAC
1 TTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAAC
13685170 TTTAGGGAGATA
1 TTTAGGGAGATA
13685182 GGATTGGTTT
Statistics
Matches: 108, Mismatches: 23, Indels: 16
0.73 0.16 0.11
Matches are distributed among these distances:
40 27 0.25
41 3 0.03
42 5 0.05
43 34 0.31
44 39 0.36
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (44 bp):
TTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTACAAC
Found at i:13685205 original size:44 final size:42
Alignment explanation
Indices: 13684922--13685233 Score: 176
Period size: 43 Copynumber: 7.3 Consensus size: 42
13684912 TGACTTCAGA
* **
13684922 GAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGG
1 GAGATAAGATTGGTTT-TTCTGTCTGCTCCACTACAACTTAGG
* * ***
13684965 GAGATAAGACTT-G--ATGC-GATCTGCTCCACTACTGTTTAGG
1 GAGATAAGA-TTGGTTTTTCTG-TCTGCTCCACTACAACTTAGG
* ** * *
13685005 GAGATAAGATCTGTGGTTTT-AATCCGCTCCACTGCAACTTTAGG
1 GAGATAAGAT-TG-GTTTTTCTGTCTGCTCCACTACAAC-TTAGG
**
13685049 GAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGG
1 GAGATAAGATTGGTTT-TTCTGTCTGCTCCACTACAACTTAGG
* * * **
13685092 GAGATAAGACTT-G---ATGTGATCTACTCCACTATTACTTAGG
1 GAGATAAGA-TTGGTTTTTCTG-TCTGCTCCACTACAACTTAGG
* ** * *
13685132 GAGATAAGATCTGTGGTTTT-AATCCGCTCCACTGCAACTTTAGG
1 GAGATAAGAT-TG-GTTTTTCTGTCTGCTCCACTACAAC-TTAGG
* **
13685176 GAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGG
1 GAGATAAGATTGGTTT-TTCTGTCTGCTCCACTACAACTTAGG
13685219 GAGATAAGACTTGGT
1 GAGATAAGA-TTGGT
13685234 GCGATCTGCT
Statistics
Matches: 205, Mismatches: 41, Indels: 45
0.70 0.14 0.15
Matches are distributed among these distances:
39 6 0.03
40 60 0.29
42 8 0.04
43 67 0.33
44 63 0.31
45 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (42 bp):
GAGATAAGATTGGTTTTTCTGTCTGCTCCACTACAACTTAGG
Found at i:13685397 original size:131 final size:131
Alignment explanation
Indices: 13685171--13686189 Score: 965
Period size: 131 Copynumber: 7.8 Consensus size: 131
13685161 CACTGCAACT
* ** * * *
13685171 TTAGGGAGATAGGATTGGTTTCTTCTG-TCTGCTCCACTACTGCTTAGGGAGATAAGACTT-G--
1 TTAGGGAGATAGGACTGGTGGCTT-AGATCTGCTCCACTACTGCTTAGGAAGATGAGA-TTCGCC
* *
13685232 G--TGCGATCTGCTCCACTACTGCTTAAGGAGATAGGATCTACCATCTTTGACCTGCTCCACTAC
64 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTAC
13685295 TGC
129 TGC
* *
13685298 TTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGT
1 TTAGGGAGATAGGACTGGTGGCTTAGATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGT
13685363 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTG
13685428 C
131 C
* * *
13685429 TTAGGGAGATAGGACTGGTGGCTTAAATCTACTTCACTACTGCTTAGGAAGATGAGATTCGCCGT
1 TTAGGGAGATAGGACTGGTGGCTTAGATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGT
*
13685494 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTACTCCACTACTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTG
13685559 C
131 C
* * ** * * * *
13685560 TTAGGGAGATATGA-T-TTACCATCTCCGACCTGCTCCACTACTGCTTAGGGAGAT-ATGACT-G
1 TTAGGGAGATAGGACTGGTGGC-T-T-AGATCTGCTCCACTACTGCTTAGGAAGATGA-GATTCG
** * ** * * * *
13685621 GTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGAT-GAGAT-TCACCATCTTCGATCTGCTCCA
62 CCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-ACCATCTTTGACCTGCTCCA
13685684 CTACTGC
125 CTACTGC
***** * * * * ** *
13685691 TTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCA
1 TTAGGGAGATAGGA-CTGGTGGCTTAGATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCG
* * ***** ** * *
13685756 TCTTCGACCTGCTCCACTACTACTTAGGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTACT
65 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACT
13685820 GC
130 GC
* * * * * * * *
13685822 TTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT-ATGA-TCTAC
1 TTAGGGAGATAGGACTGGT-GGCTTAGATCTGCTCCACTACTGCTTAGGAAGATGA-GATTC-GC
* * * * ***** ** * *
13685885 CATCTTTGACCTGCTCCACTACTGCTTAAGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTA
63 CGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTA
*
13685949 CTAC
128 CTGC
* * * ** * *
13685953 TTAAGAAGAT-GAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCC
1 TTAGGGAGATAG-GACT-GGTGGCTTAGATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCC
*
13686017 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTAC
64 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTAC
13686082 TGC
129 TGC
* * * * * *
13686085 TTAGGGAGATAGGACTGGTGGCTTAAATTTGCTTCACTACTACTTAGGAAGATAAGATTCGTCGT
1 TTAGGGAGATAGGACTGGTGGCTTAGATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGT
* *
13686150 CTTCAATCTGGTCCACTACTGCTTAGGGAGATAGGATCTA
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTA
13686190 ATATGATGAC
Statistics
Matches: 756, Mismatches: 108, Indels: 52
0.83 0.12 0.06
Matches are distributed among these distances:
126 2 0.00
127 49 0.06
129 3 0.00
130 7 0.01
131 599 0.79
132 90 0.12
133 4 0.01
134 2 0.00
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (131 bp):
TTAGGGAGATAGGACTGGTGGCTTAGATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGT
CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTG
C
Found at i:13685505 original size:175 final size:175
Alignment explanation
Indices: 13685324--13686098 Score: 1108
Period size: 175 Copynumber: 4.4 Consensus size: 175
13685314 GGTGGCTTAA
* * * * * *
13685324 ATCTGCTTCACTACTGCTTAGGAAGAT-GAGAT-TCGCCGTCTTCGATCTGCTCCACTACTGCTT
1 ATCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-ACCATCTTTGACCTGCTCCACTACTGCTT
* *
13685387 AGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCT
64 AGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTACTTAGGGAGATAGGACTGGTGGCT
*
13685452 TAAATCTACTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
129 TAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
*
13685499 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
* * * * *
13685564 GGAGATATGATTTACCATCTCCGACCTGCTCCACTACTGCTTAGGGAGATATGACTGGTGGCTTA
66 GGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTACTTAGGGAGATAGGACTGGTGGCTTA
* *
13685629 AATCTGCTTCACTACTGCTTAGGAAGATGAGATTCACCATCTTCG
131 AATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
13685674 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
* *
13685739 GGAGATAAGATTTACCATCTTCGACCTGCTCCACTACTACTTAGGGAGATAGGACTGGTGGCTTA
66 GGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTACTTAGGGAGATAGGACTGGTGGCTTA
* *
13685804 AATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCG
131 AATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
* *
13685849 ATCTGCTCCACTACTGCTTAGGGAGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAA
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
***** ** * * * * * ** *
13685914 GGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTACTACTTAAGAAGAT-GAGATTCGCCGTCT
66 GGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTACTTAGGGAGATAG-GACT-GGTGGCT
** *
13685977 TCGATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
129 TAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
*
13686024 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
13686089 GGAGATAGGA
66 GGAGATAGGA
13686099 CTGGTGGCTT
Statistics
Matches: 545, Mismatches: 51, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
173 1 0.00
174 30 0.06
175 512 0.94
176 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.30
Consensus pattern (175 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAG
GGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTACTTAGGGAGATAGGACTGGTGGCTTA
AATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
Found at i:13685602 original size:306 final size:305
Alignment explanation
Indices: 13685198--13686189 Score: 1255
Period size: 306 Copynumber: 3.3 Consensus size: 305
13685188 GTTTCTTCTG
* * * * * *
13685198 TCTGCTCCACTACTGCTTAGGGAGATAAGACTT-G---GTGCGATCTGCTCCACTACTGCTTAAG
1 TCTGCTCCACTACTGCTTAGGAAGATAAGA-TTCGCATCTTCGACCTACTCCACTACTGCTTAGG
*
13685259 GAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAA
65 GAGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAA
13685324 ATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
130 ATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
****
13685389 GGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTT
195 GGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGCTT
* * * * * **
13685453 AAATCTACTTCACTACTGCTTAGGAAGAT-GAGATTCGCCGTCTTCGA
260 AAACCTACTCCACTACTACTTAGGAAGATAG-GACT-GCCGGCTTAAA
* * *
13685500 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTAC-CATCTTTGACCTACTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGAAGATAAGAT-T-CGCATCTTCGACCTACTCCACTACTGCTTAG
* ** *
13685564 GGAGATATGATTTACCATCTCCGACCTGCTCCACTACTGCTTAGGGAGATATGACTGGTGGCTTA
64 GGAGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTA
* *
13685629 AATCTGCTTCACTACTGCTTAGGAAGATGAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA
129 AATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * *
13685694 GGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAAGATTTACCATCT
194 GGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGCT
** * * **
13685759 TCGACCTGCTCCACTACTACTTAGGGAGATAGGACTGGTGGCTTAAA
259 TAAACCTACTCCACTACTACTTAGGAAGATAGGACTGCCGGCTTAAA
* * * *
13685806 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGAAGATAAGATTCG-CATCTTCGACCTACTCCACTACTGCTTAGG
*
13685871 GAGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAAGGAGATAGGACTGGTGGCTTAA
65 GAGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAA
* *
13685936 ATCTGCTTCACTACTACTTAAGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
130 ATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
* * * * * *
13686001 GAAGAT-GAGAT-TCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATC
195 GGAGATAG-GATCT-ACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGC
** * * * **
13686064 TTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAA
258 TTAAACCTACTCCACTACTACTTAGGAAGATAGGACTGCCGGCTTAAA
* * * * * * **
13686112 TTTGCTTCACTACTACTTAGGAAGATAAGATTCGTCGTCTTCAATCTGGTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGAAGATAAGATTCG-CATCTTCGACCTACTCCACTACTGCTTAGG
*
13686177 GAGATAGGATCTA
65 GAGATATGATCTA
13686190 ATATGATGAC
Statistics
Matches: 615, Mismatches: 63, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
301 1 0.00
302 30 0.05
304 1 0.00
305 3 0.00
306 550 0.89
307 29 0.05
308 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (305 bp):
TCTGCTCCACTACTGCTTAGGAAGATAAGATTCGCATCTTCGACCTACTCCACTACTGCTTAGGG
AGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAA
TCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGCTTA
AACCTACTCCACTACTACTTAGGAAGATAGGACTGCCGGCTTAAA
Found at i:13686099 original size:175 final size:174
Alignment explanation
Indices: 13685199--13686181 Score: 1034
Period size: 175 Copynumber: 5.6 Consensus size: 174
13685189 TTTCTTCTGT
* * * *
13685199 CTGCTCCACTACTGCTTAGGGAGATAAGACTTGGT-GC---GATCTGCTCCACTACTGCTTAAGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGAC-TGGTAGCTTAGACCTGCTCCACTACTACTTAGGG
** ** ** * * * ** * *
13685260 AGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGAT-AGGACT-GGTGGCTTA
65 AGATAGGA-CTGGCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATGA-GATTCGCCGTCTTC
* * * * * * *
13685323 AATCTGCTTCACTACTGCTTAGGAAGAT-GAGAT-TCGCCGTCTTCGAT
128 GATCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-ACCATCTTTGAC
*** * * *
13685370 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTAGCTTAGACCTGCTCCACTACTACTTAGGG
* * *
13685435 AGATAGGACTGGTGGCTTAAATCTACTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGA
65 AGATAGGACTGGCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGA
13685500 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
130 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* * * * * *
13685545 CTACTCCACTACTGCTTAGGGAGATATGA-T-TTACCATCTCCGACCTGCTCCACTACTGCTTAG
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGC-T-T-AGACCTGCTCCACTACTACTTAG
* * * * *
13685608 GGAGATATGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCACCATCTTC
63 GGAGATAGGACTGGCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTC
13685673 GATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
128 GATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* * *** * *
13685720 CTGCTCCACTACTGCTTAGGGAGATAAGATTTACCATCTTCGACCTGCTCCACTACTACTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTAGCTTAGACCTGCTCCACTACTACTTAGGG
* * * *
13685785 AGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGA
65 AGATAGGACTGGCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGA
*
13685850 TCTGCTCCACTACTGCTTAGGGAGATATGATCTACCATCTTTGAC
130 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* * * * * * *
13685895 CTGCTCCACTACTGCTTAAGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTACTTAAGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTAGACCTGCTCCACTACTACTTAGGGA
* * * **
13685960 GAT-GAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
66 GATAG-GACT-GGCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCG
*
13686024 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGAC
129 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* * ** * *
13686070 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATTTGCTTCACTACTACTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTAGACCTGCTCCACTACTACTTAGGGA
* * * * * * *
13686135 GATAAGATTCGTCGTCTTCAATCTGGTCCACTACTGCTTAGGGAGAT
66 GATAGGACT-GGCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGAT
13686182 AGGATCTAAT
Statistics
Matches: 709, Mismatches: 85, Indels: 32
0.86 0.10 0.04
Matches are distributed among these distances:
171 29 0.04
172 4 0.01
173 3 0.00
174 62 0.09
175 604 0.85
176 3 0.00
177 2 0.00
178 2 0.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (174 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTAGACCTGCTCCACTACTACTTAGGGA
GATAGGACTGGCGGCTTAAATCTGCTCCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTCGAT
CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
Found at i:13692711 original size:18 final size:20
Alignment explanation
Indices: 13692670--13692716 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
13692660 GTATGTGTAC
13692670 ATATATAAGGTATATAAATA
1 ATATATAAGGTATATAAATA
13692690 ATATATAA-GTATGA-AAATA
1 ATATATAAGGTAT-ATAAATA
13692709 TATATATA
1 -ATATATA
13692717 CAAATAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
ATATATAAGGTATATAAATA
Found at i:13692768 original size:24 final size:23
Alignment explanation
Indices: 13692735--13692780 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
13692725 TTAAAAAAAT
* *
13692735 ATGTACGTATGTATATATGACAAA
1 ATGTAAGTATGTACATAT-ACAAA
13692759 ATGTAAGTATGTACATATACAA
1 ATGTAAGTATGTACATATACAA
13692781 CAAAATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (23 bp):
ATGTAAGTATGTACATATACAAA
Found at i:13700746 original size:16 final size:19
Alignment explanation
Indices: 13700710--13700750 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 19
13700700 TTGTCGTAAG
13700710 TAAAATAATATTTTATGTT
1 TAAAATAATATTTTATGTT
13700729 TAAAAT-ATATTTT-T-TT
1 TAAAATAATATTTTATGTT
13700745 TAAAAT
1 TAAAAT
13700751 TATCTAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.36
17 1 0.05
18 7 0.32
19 6 0.27
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TAAAATAATATTTTATGTT
Found at i:13708707 original size:5 final size:5
Alignment explanation
Indices: 13708687--13708721 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
13708677 ATCTCTCTCT
*
13708687 TTCCC -TCCC TTTCC TTCCC TTCCC TTCCC TTCCC T
1 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC T
13708722 CGCTCGCTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (5 bp):
TTCCC
Found at i:13710348 original size:26 final size:26
Alignment explanation
Indices: 13710319--13710371 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
13710309 ATAATTTAAA
13710319 TTAAATGTATGTGTTT-CAA-ATTGTTT
1 TTAAATGTA-GT-TTTACAAGATTGTTT
*
13710345 TTAAATTTAGTTTTACAAGATTGTTT
1 TTAAATGTAGTTTTACAAGATTGTTT
13710371 T
1 T
13710372 AACATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.55
Consensus pattern (26 bp):
TTAAATGTAGTTTTACAAGATTGTTT
Found at i:13711951 original size:18 final size:19
Alignment explanation
Indices: 13711915--13711952 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
13711905 TTATATGTAA
* *
13711915 TATATATACATTTATATTT
1 TATATATACATATACATTT
13711934 TATA-ATACATATACATTT
1 TATATATACATATACATTT
13711952 T
1 T
13711953 CCTTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (19 bp):
TATATATACATATACATTT
Found at i:13716614 original size:21 final size:21
Alignment explanation
Indices: 13716590--13716635 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
13716580 TGTGGTGCAC
13716590 TTTTAAAAGGAATCTAGGAAT
1 TTTTAAAAGGAATCTAGGAAT
** * *
13716611 TTTTGGAAGGGATCTAGGCAT
1 TTTTAAAAGGAATCTAGGAAT
13716632 TTTT
1 TTTT
13716636 TGTAACACCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.39
Consensus pattern (21 bp):
TTTTAAAAGGAATCTAGGAAT
Found at i:13718900 original size:43 final size:43
Alignment explanation
Indices: 13718835--13718999 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 43
13718825 TACCGTAACA
* * * * * *
13718835 ATGCC-ATATCCCAGATACGGTCTTACATGTAATCTCGTATTG
1 ATGCCAATAGCCCAGACATGGTCTTACACGAAATCTCATATTG
* * *
13718877 ATGCCAATAGCCCAGCCATGGTCTTACACGAAATCACATATCG
1 ATGCCAATAGCCCAGACATGGTCTTACACGAAATCTCATATTG
* *
13718920 ATGCCAAT-GTCCCAAACATGGTCTTACAC-AAATTCTCATGTTG
1 ATGCCAATAG-CCCAGACATGGTCTTACACGAAA-TCTCATATTG
* * *
13718963 ATGCC-ATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCAATAGCCCAGACATGGTCTTACACGAAATCTCA
13719000 GTAACCCGAA
Statistics
Matches: 100, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 33 0.33
43 67 0.67
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATAGCCCAGACATGGTCTTACACGAAATCTCATATTG
Found at i:13721779 original size:44 final size:44
Alignment explanation
Indices: 13721729--13721896 Score: 148
Period size: 44 Copynumber: 3.8 Consensus size: 44
13721719 AGACCAGTTG
13721729 CAAATACAATTTTATCATTAAGTTTGATATTCAAAACTTGAATT
1 CAAATACAATTTTATCATTAAGTTTGATATTCAAAACTTGAATT
* *
13721773 CAAATACAACTTTATCATTAAGTTTGATATTC--AA-TAGAATT
1 CAAATACAATTTTATCATTAAGTTTGATATTCAAAACTTGAATT
* * ** * *
13721814 CTAAT--ATTTATTAGGAGTAGAGTTTATATTATTTATTCAAAACTTGAATT
1 CAAATACAATT-TTATCATTA-AG--T-T-TGA--TATTCAAAACTTGAATT
*
13721864 CAAATACAATTTTATCATTAAGTTTAATATTCA
1 CAAATACAATTTTATCATTAAGTTTGATATTCA
13721897 TTAGAATTCT
Statistics
Matches: 95, Mismatches: 16, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
39 2 0.02
40 6 0.06
41 12 0.13
42 2 0.02
43 1 0.01
44 38 0.40
45 2 0.02
46 2 0.02
47 6 0.06
48 1 0.01
49 2 0.02
50 12 0.13
51 6 0.06
52 3 0.03
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (44 bp):
CAAATACAATTTTATCATTAAGTTTGATATTCAAAACTTGAATT
Found at i:13721960 original size:91 final size:91
Alignment explanation
Indices: 13721756--13721940 Score: 334
Period size: 91 Copynumber: 2.0 Consensus size: 91
13721746 TTAAGTTTGA
*
13721756 TATTCAAAACTTGAATTCAAATACAACTTTATCATTAAGTTTGATATTCAATAGAATTCTAATAT
1 TATTCAAAACTTGAATTCAAATACAACTTTATCATTAAGTTTAATATTCAATAGAATTCTAATAT
13721821 TTATTAGGAGTAGAGTTTATATTATT
66 TTATTAGGAGTAGAGTTTATATTATT
* * *
13721847 TATTCAAAACTTGAATTCAAATACAATTTTATCATTAAGTTTAATATTCATTAGAATTCTACTAT
1 TATTCAAAACTTGAATTCAAATACAACTTTATCATTAAGTTTAATATTCAATAGAATTCTAATAT
13721912 TTATTAGGAGTAGAGTTTATATTATT
66 TTATTAGGAGTAGAGTTTATATTATT
13721938 TAT
1 TAT
13721941 ATTCCTTATA
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (91 bp):
TATTCAAAACTTGAATTCAAATACAACTTTATCATTAAGTTTAATATTCAATAGAATTCTAATAT
TTATTAGGAGTAGAGTTTATATTATT
Found at i:13722882 original size:21 final size:21
Alignment explanation
Indices: 13722858--13722903 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
13722848 TGTGGTGCAC
13722858 TTTTAAAAGGAATCTAGGAAT
1 TTTTAAAAGGAATCTAGGAAT
* *
13722879 TTTTCAAAGGGATCTAGGAAT
1 TTTTAAAAGGAATCTAGGAAT
13722900 TTTT
1 TTTT
13722904 GGGTCAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.39
Consensus pattern (21 bp):
TTTTAAAAGGAATCTAGGAAT
Found at i:13729117 original size:59 final size:63
Alignment explanation
Indices: 13729037--13729173 Score: 158
Period size: 59 Copynumber: 2.2 Consensus size: 63
13729027 TTTTAGTTTA
* *
13729037 TTAGATTTTGAAATTATTATGTCTTGAA-TTTGTTAGATATTG-A-TTA-TA-TTTTAAGCTTG
1 TTAGATATTGAAATTATTATGT-TTGAAGCTTGTTAGATATTGAATTTATTAGTTTTAAGCTTG
* * * *
13729096 TTAGATATTGAATTTATTATGTTTTAAGCTTGTTGGATATTGAATTTATTATGTTTTAAGTTTG
1 TTAGATATTGAAATTATTATGTTTGAAGCTTGTTAGATATTGAATTTATTA-GTTTTAAGCTTG
*
13729160 TTGGATATTGAAAT
1 TTAGATATTGAAAT
13729174 GATTGACAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
58 4 0.06
59 32 0.50
60 1 0.02
61 3 0.05
62 2 0.03
64 22 0.34
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.53
Consensus pattern (63 bp):
TTAGATATTGAAATTATTATGTTTGAAGCTTGTTAGATATTGAATTTATTAGTTTTAAGCTTG
Found at i:13729121 original size:32 final size:32
Alignment explanation
Indices: 13729037--13729171 Score: 156
Period size: 32 Copynumber: 4.4 Consensus size: 32
13729027 TTTTAGTTTA
* * * *
13729037 TTAGATTTTGAAATTATTATGTCTTGAA-TTTG
1 TTAGATATTGAATTTATTATGT-TTTAAGCTTG
13729069 TTAGATATTG-A-TTA-TA--TTTTAAGCTTG
1 TTAGATATTGAATTTATTATGTTTTAAGCTTG
13729096 TTAGATATTGAATTTATTATGTTTTAAGCTTG
1 TTAGATATTGAATTTATTATGTTTTAAGCTTG
* *
13729128 TTGGATATTGAATTTATTATGTTTTAAGTTTG
1 TTAGATATTGAATTTATTATGTTTTAAGCTTG
*
13729160 TTGGATATTGAA
1 TTAGATATTGAA
13729172 ATGATTGACA
Statistics
Matches: 92, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
26 4 0.04
27 14 0.15
28 1 0.01
29 5 0.05
30 5 0.05
31 1 0.01
32 62 0.67
ACGTcount: A:0.28, C:0.02, G:0.17, T:0.53
Consensus pattern (32 bp):
TTAGATATTGAATTTATTATGTTTTAAGCTTG
Found at i:13730449 original size:20 final size:20
Alignment explanation
Indices: 13730424--13730461 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
13730414 ACAATTTAAA
13730424 ATATAAATTTATTAATATGT
1 ATATAAATTTATTAATATGT
13730444 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
13730462 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATAAATTTATTAATATGT
Found at i:13730573 original size:20 final size:19
Alignment explanation
Indices: 13730547--13730590 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
13730537 CTAAACACCA
*
13730547 AAAAAGTAAATTATTTTCC
1 AAAAAGTAAATCATTTTCC
13730566 AGAAAAGTAAATCATTTTCC
1 A-AAAAGTAAATCATTTTCC
13730586 AAAAA
1 AAAAA
13730591 TTATTTTCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (19 bp):
AAAAAGTAAATCATTTTCC
Found at i:13730769 original size:24 final size:24
Alignment explanation
Indices: 13730714--13730761 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
13730704 TCCTAAGGTT
13730714 AAGTTTTTAATATTTTTAGGTTTA
1 AAGTTTTTAATATTTTTAGGTTTA
13730738 AAGTTTTTAATATTTTTAGGTTTA
1 AAGTTTTTAATATTTTTAGGTTTA
13730762 GGGTTTTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.58
Consensus pattern (24 bp):
AAGTTTTTAATATTTTTAGGTTTA
Found at i:13730785 original size:15 final size:15
Alignment explanation
Indices: 13730749--13730785 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
13730739 AGTTTTTAAT
*
13730749 ATTTTTAGGTTTAGG
1 ATTTTTGGGTTTAGG
*
13730764 GTTTTTGGGTTTAGG
1 ATTTTTGGGTTTAGG
13730779 ATTTTTG
1 ATTTTTG
13730786 ACAAAAACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.00, G:0.30, T:0.57
Consensus pattern (15 bp):
ATTTTTGGGTTTAGG
Found at i:13732490 original size:19 final size:19
Alignment explanation
Indices: 13732468--13732508 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
13732458 ATTGCATTTC
13732468 ATTCA-TTGCATTTAGGTTA
1 ATTCATTTGCATTTA-GTTA
13732487 ATTCATTTGCATTTAGTTA
1 ATTCATTTGCATTTAGTTA
13732506 ATT
1 ATT
13732509 AAATTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (19 bp):
ATTCATTTGCATTTAGTTA
Found at i:13735329 original size:23 final size:23
Alignment explanation
Indices: 13735295--13735346 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
13735285 AACTAATATT
*
13735295 TTTA-AACGAGAATATTGA-AAAA
1 TTTAGAACAAGAA-ATTGAGAAAA
*
13735317 TTTAGAACAAGAACTTGAGAAAA
1 TTTAGAACAAGAAATTGAGAAAA
*
13735340 TTGAGAA
1 TTTAGAA
13735347 AGTTGAGAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.52, C:0.06, G:0.17, T:0.25
Consensus pattern (23 bp):
TTTAGAACAAGAAATTGAGAAAA
Found at i:13735415 original size:37 final size:37
Alignment explanation
Indices: 13735371--13735446 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
13735361 GGAAATTAGA
13735371 AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
1 AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
13735408 AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
1 AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
13735445 AA
1 AA
13735447 ATTTGAGGCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21
Consensus pattern (37 bp):
AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
Found at i:13740231 original size:12 final size:12
Alignment explanation
Indices: 13740214--13740254 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
13740204 ACTTAATCAC
13740214 TTTAATATTAAA
1 TTTAATATTAAA
13740226 TTTAATATTAAA
1 TTTAATATTAAA
*
13740238 TCT--TATTAAA
1 TTTAATATTAAA
13740248 -TTAATAT
1 TTTAATAT
13740255 AATATTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
9 1 0.04
10 7 0.28
11 3 0.12
12 14 0.56
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:13740763 original size:9 final size:9
Alignment explanation
Indices: 13740749--13740778 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
13740739 AAAGTATCAT
13740749 ATTAATTTA
1 ATTAATTTA
*
13740758 ATTAATTTG
1 ATTAATTTA
13740767 ATTAATTTA
1 ATTAATTTA
13740776 ATT
1 ATT
13740779 TTATTTGATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (9 bp):
ATTAATTTA
Found at i:13744379 original size:19 final size:19
Alignment explanation
Indices: 13744357--13744397 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
13744347 TATACTGGTG
13744357 CACAAAGCACATCCTAGCA
1 CACAAAGCACATCCTAGCA
** *
13744376 CACAAAGTGCATCTTAGCA
1 CACAAAGCACATCCTAGCA
13744395 CAC
1 CAC
13744398 CAAGTGCATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.39, C:0.34, G:0.12, T:0.15
Consensus pattern (19 bp):
CACAAAGCACATCCTAGCA
Found at i:13744402 original size:19 final size:19
Alignment explanation
Indices: 13744366--13744429 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
13744356 GCACAAAGCA
13744366 CATCCTAGCACACAAAGTG
1 CATCCTAGCACACAAAGTG
* *
13744385 CATCTTAGCACACCAAGTG
1 CATCCTAGCACACAAAGTG
* **
13744404 CATACCTGGCACATGAAGTG
1 CAT-CCTAGCACACAAAGTG
13744424 CATCCT
1 CATCCT
13744430 GGTGCAAGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 23 0.61
20 15 0.39
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (19 bp):
CATCCTAGCACACAAAGTG
Found at i:13749015 original size:41 final size:41
Alignment explanation
Indices: 13748958--13749148 Score: 337
Period size: 41 Copynumber: 4.6 Consensus size: 41
13748948 GACTATACGT
13748958 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
13748999 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
13749040 CTAGCAGGTTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* * *
13749081 CTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
13749122 CTAGCAGGCTAAGTGCCGGTGAATCTG
1 CTAGCAGGCTAAGTGCCGGTG-ATCTG
13749149 TTAAATTAAA
Statistics
Matches: 143, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
41 138 0.97
42 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:13750436 original size:23 final size:23
Alignment explanation
Indices: 13750410--13750483 Score: 89
Period size: 23 Copynumber: 3.2 Consensus size: 23
13750400 AAAATGGTAT
13750410 CAAAATAGCACAAAAAACAACAC
1 CAAAATAGCACAAAAAACAACAC
*
13750433 CAAAACAGCACAAAAAACAACAC
1 CAAAATAGCACAAAAAACAACAC
* *
13750456 C--ACTAGCAACACCAAAACAACAC
1 CAAAATAGC-ACA-AAAAACAACAC
13750479 CAAAA
1 CAAAA
13750484 ACCTGCAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
21 4 0.10
22 3 0.07
23 34 0.81
25 1 0.02
ACGTcount: A:0.62, C:0.31, G:0.04, T:0.03
Consensus pattern (23 bp):
CAAAATAGCACAAAAAACAACAC
Found at i:13750437 original size:12 final size:12
Alignment explanation
Indices: 13750422--13750485 Score: 69
Period size: 12 Copynumber: 5.5 Consensus size: 12
13750412 AAATAGCACA
13750422 AAAAACAACACC
1 AAAAACAACACC
* *
13750434 -AAAACAGCACA
1 AAAAACAACACC
13750445 AAAAACAACACC
1 AAAAACAACACC
** *
13750457 ACTAGCAACACC
1 AAAAACAACACC
13750469 -AAAACAACACC
1 AAAAACAACACC
13750480 AAAAAC
1 AAAAAC
13750486 CTGCAAAATA
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
11 17 0.43
12 23 0.57
ACGTcount: A:0.62, C:0.33, G:0.03, T:0.02
Consensus pattern (12 bp):
AAAAACAACACC
Found at i:13751125 original size:70 final size:70
Alignment explanation
Indices: 13751012--13751151 Score: 235
Period size: 70 Copynumber: 2.0 Consensus size: 70
13751002 AAATAAATGT
* * * *
13751012 CCAACTGTGAATTTTTACTCTTAGTGCTAGATTCATTTAAATACCATTTATAATCATCACTCTCA
1 CCAACTGCGAATTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCA
13751077 TCAAA
66 TCAAA
*
13751082 CCAACTGCGAATTTTCAATCTTAGTGCTAGATTTATTTAAATACCATTTATAATCACCACTCTCA
1 CCAACTGCGAATTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCA
13751147 TCAAA
66 TCAAA
13751152 ATCTCCCCCA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (70 bp):
CCAACTGCGAATTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCA
TCAAA
Done.