Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 51 of 214
Found at i:13975196 original size:46 final size:43
Alignment explanation
Indices: 13975112--13975196 Score: 109
Period size: 46 Copynumber: 1.9 Consensus size: 43
13975102 TACTATGTGA
*
13975112 ACCGGTATCATTAATTATAAGGTGGTTTCTTCGTGCTGATCCC
1 ACCGGTATCATTAATTATAAGGTGGTTGCTTCGTGCTGATCCC
*
13975155 ACCGGATATCATTGATTATAAAGGGTGGTTGCTGT-GTGCTGA
1 ACCGG-TATCATTAATTAT-AA-GGTGGTTGCT-TCGTGCTGA
13975197 ATCCACTATG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
43 5 0.14
44 12 0.33
45 2 0.06
46 16 0.44
47 1 0.03
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.35
Consensus pattern (43 bp):
ACCGGTATCATTAATTATAAGGTGGTTGCTTCGTGCTGATCCC
Found at i:13975369 original size:15 final size:16
Alignment explanation
Indices: 13975335--13975370 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
13975325 TGATTGAAAG
*
13975335 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
13975351 TGAAAAAGTAAAATT-
1 TGAAAAAGTAAAATTA
13975366 TGAAA
1 TGAAA
13975371 CAGAATAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.58, C:0.00, G:0.17, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:13996102 original size:9 final size:9
Alignment explanation
Indices: 13996088--13996118 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
13996078 GTTAAACGAA
13996088 TCGAGTTAT
1 TCGAGTTAT
*
13996097 TCGAGTTAA
1 TCGAGTTAT
13996106 TCGAGTTAT
1 TCGAGTTAT
13996115 TCGA
1 TCGA
13996119 ATCAACTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:13996200 original size:9 final size:9
Alignment explanation
Indices: 13996171--13996207 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
13996161 TGAGTTTTCA
13996171 AATTCGAAT
1 AATTCGAAT
*
13996180 AACTCGAAT
1 AATTCGAAT
13996189 AATTCGAAT
1 AATTCGAAT
*
13996198 AATTAGAAT
1 AATTCGAAT
13996207 A
1 A
13996208 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14015792 original size:50 final size:49
Alignment explanation
Indices: 14015667--14015797 Score: 138
Period size: 49 Copynumber: 2.7 Consensus size: 49
14015657 CTGATAATAC
* * * * *
14015667 ATGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTTCTATA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATGTTCTCTATA
* * *
14015716 ATGCCAATGTCATATCCCAGAGATGGTCTTACATGAGA-GTTCTCATACTA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATGTTCTC-TA-TA
* * *
14015766 GTGCCCATGCCATGTCCCAGACATGGTTTTAC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTAC
14015798 GCGGACCTCT
Statistics
Matches: 66, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
48 5 0.08
49 33 0.50
50 28 0.42
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (49 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGAGATGTTCTCTATA
Found at i:14015897 original size:50 final size:50
Alignment explanation
Indices: 14015730--14015898 Score: 166
Period size: 50 Copynumber: 3.4 Consensus size: 50
14015720 CAATGTCATA
* * ** * *
14015730 TCCCAGAGATGGTCTTACATGAGAGTTCTCATACT-AGTGCCCA-TGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCAT-CTCGGTGCCAACT-CCATG
* *
14015780 TCCCAGACATGGTTTTAC--GCGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATG-GGACCTCTCATCTCGGTGCCAACTCCATG
* * ** *
14015829 TCCTAGATATGGAATTACATGGGACCTCTCATCTCGGTGCCAACTCCTTG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACTCCATG
14015879 TCCCAGACATGGTCTTACAT
1 TCCCAGACATGGTCTTACAT
14015899 AGGATCTCAT
Statistics
Matches: 96, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
48 3 0.03
49 33 0.34
50 59 0.61
51 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACTCCATG
Found at i:14020079 original size:50 final size:49
Alignment explanation
Indices: 14019952--14020081 Score: 176
Period size: 48 Copynumber: 2.7 Consensus size: 49
14019942 GAAGTTAGTA
* *
14019952 GCAGTTTACCTGCAAATCAGTGGTGGCTT-TCCACAAAGTGTTTTAGTG
1 GCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTCAGTG
* * * *
14020000 GTAGTATATCTGCATAT--GTGGTGGCTTGTCCACAATGTGTTATCAGTG
1 GCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTT-TCAGTG
14020048 GCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCA
1 GCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCA
14020082 TAAATGGTGG
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 10 0.14
47 12 0.17
48 32 0.46
50 15 0.22
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.35
Consensus pattern (49 bp):
GCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCACAAAGTGTTTCAGTG
Found at i:14031833 original size:17 final size:18
Alignment explanation
Indices: 14031794--14031834 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
14031784 TTTTATAAGT
14031794 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGATA
14031812 TGTGAATTA-ATATTGA-A
1 TGTGAATTATAT-TTGATA
14031829 TGTGAA
1 TGTGAA
14031835 AGGAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.44
Consensus pattern (18 bp):
TGTGAATTATATTTGATA
Found at i:14032084 original size:23 final size:23
Alignment explanation
Indices: 14032058--14032110 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
14032048 AGTGTTATTG
14032058 ATCAGTGGTAGCTAT-GACTACAT
1 ATCAGTGGTAGCT-TCGACTACAT
*
14032081 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGACTACAT
14032104 ATCAGTG
1 ATCAGTG
14032111 TGGCACTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 1 0.04
23 27 0.96
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGACTACAT
Found at i:14041384 original size:21 final size:20
Alignment explanation
Indices: 14041355--14041402 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
14041345 TATTCCTTAG
14041355 AATTTTTTTAAAAAAAATTTA
1 AATTTTTTTAAAAAAAA-TTA
*
14041376 TAATTTTTTTTAAAAAAATTA
1 -AATTTTTTTAAAAAAAATTA
14041397 AATTTT
1 AATTTT
14041403 AAGTTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 6 0.24
21 3 0.12
22 16 0.64
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
AATTTTTTTAAAAAAAATTA
Found at i:14045794 original size:14 final size:14
Alignment explanation
Indices: 14045761--14045811 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
14045751 AGAAATAATG
* *
14045761 AATTTCTAAATCATA
1 AATTTCAAAATTA-A
14045776 AATTTCAAAATTAA
1 AATTTCAAAATTAA
* *
14045790 AATTTTAAAATTCA
1 AATTTCAAAATTAA
14045804 AATTTCAA
1 AATTTCAA
14045812 TTCCCAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
14 20 0.65
15 11 0.35
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTTCAAAATTAA
Found at i:14063545 original size:29 final size:29
Alignment explanation
Indices: 14063488--14063545 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
14063478 TCAATCTAGG
* *
14063488 TTATGTTAGGTTCGAATTATGGTTGAATT
1 TTATGTTAGGCTCGAATTATGGTAGAATT
14063517 TTATGTTTAGGCTCG-ATTA-GGTAGCAATT
1 TTATG-TTAGGCTCGAATTATGGTAG-AATT
14063546 GGACAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 4 0.16
29 13 0.52
30 8 0.32
ACGTcount: A:0.24, C:0.07, G:0.24, T:0.45
Consensus pattern (29 bp):
TTATGTTAGGCTCGAATTATGGTAGAATT
Found at i:14063646 original size:2 final size:2
Alignment explanation
Indices: 14063639--14063663 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14063629 AAATTTTTAA
14063639 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14063664 AACAGGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14065691 original size:18 final size:16
Alignment explanation
Indices: 14065667--14065746 Score: 58
Period size: 16 Copynumber: 5.1 Consensus size: 16
14065657 ATTATTGTTA
14065667 AATTTTATTATTAAAAT
1 AATTTTATTATT-AAAT
*
14065684 ACATTTTAATATTAAAT
1 A-ATTTTATTATTAAAT
14065701 AA-TTTATTA-T-AAT
1 AATTTTATTATTAAAT
* * *
14065714 AATATTATTAATAATT
1 AATTTTATTATTAAAT
* * *
14065730 TATTATATTATCAAAT
1 AATTTTATTATTAAAT
14065746 A
1 A
14065747 TAAATAAGTT
Statistics
Matches: 48, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
13 5 0.10
14 7 0.15
15 7 0.15
16 13 0.27
17 6 0.12
18 10 0.21
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTTTATTATTAAAT
Found at i:14065723 original size:14 final size:13
Alignment explanation
Indices: 14065693--14065736 Score: 58
Period size: 12 Copynumber: 3.5 Consensus size: 13
14065683 TACATTTTAA
14065693 TATTA-AATAATT
1 TATTATAATAATT
14065705 TATTATAATAA--
1 TATTATAATAATT
14065716 TATTATTAATAATT
1 TATTA-TAATAATT
14065730 TATTATA
1 TATTATA
14065737 TTATCAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
11 5 0.18
12 11 0.39
13 7 0.25
14 5 0.18
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTATAATAATT
Found at i:14065730 original size:25 final size:23
Alignment explanation
Indices: 14065690--14065736 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 23
14065680 AAATACATTT
14065690 TAATATTAAATAATTTATTATAA
1 TAATATTAAATAATTTATTATAA
14065713 TAATATTATTAATAATTTATTATA
1 TAATATTA--AATAATTTATTATA
14065737 TTATCAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.36
25 14 0.64
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TAATATTAAATAATTTATTATAA
Found at i:14066749 original size:5 final size:5
Alignment explanation
Indices: 14066739--14066763 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14066729 TAAGTGATTC
14066739 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
14066764 ATTTCAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:14068166 original size:18 final size:19
Alignment explanation
Indices: 14068143--14068178 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
14068133 TCTTTTTCAC
14068143 GTTTTTCTTTTC-TCTTTA
1 GTTTTTCTTTTCTTCTTTA
14068161 GTTTTTCTTTTCTTCTTT
1 GTTTTTCTTTTCTTCTTT
14068179 CTTTGTTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.03, C:0.17, G:0.06, T:0.75
Consensus pattern (19 bp):
GTTTTTCTTTTCTTCTTTA
Found at i:14068406 original size:34 final size:34
Alignment explanation
Indices: 14068368--14068438 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
14068358 TCGTTCAAGT
* *
14068368 TGAGATCATGTATTA-TTTGTTTTGTTTGAATTTG
1 TGAGATCATGTA-GAGTTTGTTTTGTTCGAATTTG
*
14068402 TGAGATCGTGTAGAGTTTGTTTTGTTCGAATTTG
1 TGAGATCATGTAGAGTTTGTTTTGTTCGAATTTG
14068436 TGA
1 TGA
14068439 TTATTGTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 1 0.03
34 32 0.97
ACGTcount: A:0.20, C:0.04, G:0.25, T:0.51
Consensus pattern (34 bp):
TGAGATCATGTAGAGTTTGTTTTGTTCGAATTTG
Found at i:14069522 original size:15 final size:15
Alignment explanation
Indices: 14069502--14069531 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14069492 ACGATCCAAC
*
14069502 ATGATATGTTATGAT
1 ATGATAAGTTATGAT
14069517 ATGATAAGTTATGAT
1 ATGATAAGTTATGAT
14069532 CCATATGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (15 bp):
ATGATAAGTTATGAT
Found at i:14077633 original size:40 final size:40
Alignment explanation
Indices: 14077565--14077833 Score: 297
Period size: 40 Copynumber: 6.7 Consensus size: 40
14077555 AAGAAAATAT
* * * *
14077565 CCCCTGAATGCACATACGTACGCTTGTTTGTACTTCGGTA
1 CCCCCGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * *
14077605 CCCCCAAATGCACATACGTGCCCCTGTTTCTACTTTGGTA
1 CCCCCGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
14077645 CCCCCGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
1 CCCCCGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * *
14077685 CCCCCGAATGCACATATGTGCCCCTATTTTTACTTCGGTA
1 CCCCCGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * * * * * **
14077725 CCCCTGAATACACATACATTCCCTTGTTTATACTTCAATA
1 CCCCCGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * * *
14077765 CTCCTGAATGCACATACGTGCCCCTGTATGTACTTCAGTA
1 CCCCCGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * *
14077805 -CTCCTACTTGCACATACGTGCCCCTGTTT
1 CCCCCGA-ATGCACATACGTGCCCCTGTTT
14077834 ATATTTTGGT
Statistics
Matches: 191, Mismatches: 37, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.32
Consensus pattern (40 bp):
CCCCCGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
Found at i:14079518 original size:9 final size:9
Alignment explanation
Indices: 14079506--14079544 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
14079496 ATATTTATAG
14079506 AGTCATTAT
1 AGTCATTAT
14079515 AGTCATTAT
1 AGTCATTAT
14079524 AGTCATTAT
1 AGTCATTAT
*
14079533 AGACATTAT
1 AGTCATTAT
14079542 AGT
1 AGT
14079545 TAATTAAGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (9 bp):
AGTCATTAT
Found at i:14087882 original size:20 final size:20
Alignment explanation
Indices: 14087855--14087900 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
14087845 AGTGGATGGG
* *
14087855 GATATGATTTGATTTGTTAT
1 GATATGATTCGATTTGATAT
*
14087875 GCTATGATTCGATTTGATAT
1 GATATGATTCGATTTGATAT
14087895 GATATG
1 GATATG
14087901 TTATGATACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.04, G:0.22, T:0.48
Consensus pattern (20 bp):
GATATGATTCGATTTGATAT
Found at i:14087900 original size:25 final size:25
Alignment explanation
Indices: 14087855--14087933 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
14087845 AGTGGATGGG
* * *
14087855 GATATGATTTGATTTGTTATGCTAT
1 GATACGATTTGATATGATATGCTAT
* *
14087880 GATTCGATTTGATATGATATGTTAT
1 GATACGATTTGATATGATATGCTAT
* *
14087905 GATACGATCT-AGCATGATATGCTAT
1 GATACGATTTGA-TATGATATGCTAT
14087930 GATA
1 GATA
14087934 TGATAAGTTA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.02
25 43 0.98
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (25 bp):
GATACGATTTGATATGATATGCTAT
Found at i:14087946 original size:25 final size:25
Alignment explanation
Indices: 14087892--14087946 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
14087882 TTCGATTTGA
* *
14087892 TATGATATGTTATGATACGATCTAG
1 TATGATATGCTATGATACGATCAAG
* *
14087917 CATGATATGCTATGATATGAT-AAG
1 TATGATATGCTATGATACGATCAAG
14087941 TTATGA
1 -TATGA
14087947 CTCATATGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (25 bp):
TATGATATGCTATGATACGATCAAG
Found at i:14097193 original size:265 final size:265
Alignment explanation
Indices: 14096720--14097254 Score: 912
Period size: 265 Copynumber: 2.0 Consensus size: 265
14096710 TCAGATTTCC
* * * *
14096720 TCTTTGGAAGGGAAGGTGGTACTTCTATCTTTTGCTTTTGGTGTTGATTCAACTTTTGAATTTGC
1 TCTTTGGAAGGGAAAGTGGAACTTCCATCTTTTGCTTTCGGTGTTGATTCAACTTTTGAATTTGC
14096785 TTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTATG
66 TTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTATG
14096850 GAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTACGACATAAATCTGTGACCTAGTGTGGAA
131 GAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTACGACATAAATCTGTGACCTAGTGTGGAA
* *
14096915 AATATATACAAACTTTACCTCTAGAAACACATTTACACATATATTTGTGAACCCATTTCCCTAAA
196 AATATATACAAACTTTACCTCCAGAAACACAGTTACACATATATTTGTGAACCCATTTCCCTAAA
14096980 AAAAT
261 AAAAT
* *
14096985 TCTTTGGAAGGGAAAGTGGAACTTCCATCTTTTGCTTTCGGTGTTGGTTTC-CCTTTTGAATTTG
1 TCTTTGGAAGGGAAAGTGGAACTTCCATCTTTTGCTTTCGGTGTT-GATTCAACTTTTGAATTTG
* **
14097049 CTTCATTTGCAATTATCAATATTGTCCAAGAATGGTATCACCAATAATGCTTTTTGTGGGTTTAT
65 CTTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTAT
*
14097114 GGAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTACTG-CATAAATTTGTGACCTAGTGTGG
130 GGAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTAC-GACATAAATCTGTGACCTAGTGTGG
*
14097178 AAAATATATACAAACTTTACCTCCAGAAACACAGTTACACATATATTTGTGAATCCATTTCCCTA
194 AAAATATATACAAACTTTACCTCCAGAAACACAGTTACACATATATTTGTGAACCCATTTCCCTA
*
14097243 AGAAAAT
259 AAAAAAT
14097250 TCTTT
1 TCTTT
14097255 TTTTTCTGAG
Statistics
Matches: 254, Mismatches: 14, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
265 249 0.98
266 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (265 bp):
TCTTTGGAAGGGAAAGTGGAACTTCCATCTTTTGCTTTCGGTGTTGATTCAACTTTTGAATTTGC
TTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTATG
GAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTACGACATAAATCTGTGACCTAGTGTGGAA
AATATATACAAACTTTACCTCCAGAAACACAGTTACACATATATTTGTGAACCCATTTCCCTAAA
AAAAT
Found at i:14110661 original size:23 final size:23
Alignment explanation
Indices: 14110603--14110663 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
14110593 ATTATATTTT
* *
14110603 TATATTATTATAAATTTAAAATA
1 TATATTATTTTATATTTAAAATA
** *
14110626 TATAAAATCTTATATTTATAAA-A
1 TATATTATTTTATATTTA-AAATA
14110649 TATATTATTTTATAT
1 TATATTATTTTATAT
14110664 CAAGATTTTA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
23 26 0.90
24 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
TATATTATTTTATATTTAAAATA
Found at i:14110699 original size:23 final size:25
Alignment explanation
Indices: 14110672--14110727 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
14110662 ATCAAGATTT
*
14110672 TATAAAATAT-ATTT-TTCCAAATA
1 TATAAAATATAATTTATACCAAATA
14110695 TATAAAATATAATTTATACCAAATA
1 TATAAAATATAATTTATACCAAATA
14110720 TATAAAAT
1 TATAAAAT
14110728 CTAAAATGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 10 0.33
24 4 0.13
25 16 0.53
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (25 bp):
TATAAAATATAATTTATACCAAATA
Found at i:14110756 original size:17 final size:18
Alignment explanation
Indices: 14110736--14110770 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14110726 ATCTAAAATG
*
14110736 TATAAAA-ATCATATTTT
1 TATAAAATATCAAATTTT
14110753 TATAAAATATCAAATTTT
1 TATAAAATATCAAATTTT
14110771 ATGTATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (18 bp):
TATAAAATATCAAATTTT
Found at i:14113551 original size:17 final size:17
Alignment explanation
Indices: 14113521--14113553 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14113511 TATTTAAAAT
14113521 TTAATTTAATCATAATA
1 TTAATTTAATCATAATA
14113538 TTAACTTTAA-CATAAT
1 TTAA-TTTAATCATAAT
14113554 TTTTATGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAATTTAATCATAATA
Found at i:14118104 original size:85 final size:84
Alignment explanation
Indices: 14117973--14118139 Score: 201
Period size: 85 Copynumber: 2.0 Consensus size: 84
14117963 AGTTTCTCTA
* * ** *
14117973 TTTTTTTTACTCAATTGAGCACTTAAATTTTCAAAACATATTAAAAAGTCCTCAAACCTCTTCAA
1 TTTTTTTCACTCAATTGAGCACTTAAATTTTCAAAACATAATAAAAAACCCTCAAAACTCTTCAA
14118038 AAAATACAATTAAGCCCCAG
66 AAAA-ACAATTAAGCCCCAG
* * * * *
14118058 TTTTTTTCACTCAATTGGGTACTTGAATTTTCAAAATGCATAA-AAAAAACCCTCAAAATTGTTC
1 TTTTTTTCACTCAATTGAGCACTTAAATTTTCAAAA--CATAATAAAAAACCCTCAAAACTCTTC
*
14118122 AAAAAAGCAATTAAGCCC
64 AAAAAAACAATTAAGCCC
14118140 TACTCTTATT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 43 0.62
86 22 0.32
87 4 0.06
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (84 bp):
TTTTTTTCACTCAATTGAGCACTTAAATTTTCAAAACATAATAAAAAACCCTCAAAACTCTTCAA
AAAAACAATTAAGCCCCAG
Found at i:14118193 original size:28 final size:27
Alignment explanation
Indices: 14118147--14118211 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
14118137 CCCTACTCTT
*
14118147 ATTAAAAATTAGAAAAAATTTTGAAAAA
1 ATTAAAAATTAGAAAAAA-TTAGAAAAA
*
14118175 ATTAAAATTTATG-AAAAATTAGAAAAAA
1 ATTAAAAATTA-GAAAAAATTAG-AAAAA
14118203 ATTATAAAA
1 ATTA-AAAA
14118212 ATCGTAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 3 0.10
28 24 0.77
29 4 0.13
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (27 bp):
ATTAAAAATTAGAAAAAATTAGAAAAA
Found at i:14118229 original size:37 final size:37
Alignment explanation
Indices: 14118188--14118261 Score: 103
Period size: 37 Copynumber: 2.0 Consensus size: 37
14118178 AAAATTTATG
*
14118188 AAAAATTAGAAAAAAATTATAAAAATCGTAAAAAAATA
1 AAAAATT-GAAAAAAATTATAAAAATCATAAAAAAATA
* **
14118226 AAAAATTGTAAAATTTTATAAAAATCATAAAAAAAT
1 AAAAATTGAAAAAAATTATAAAAATCATAAAAAAAT
14118262 TAACAACCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 25 0.78
38 7 0.22
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.26
Consensus pattern (37 bp):
AAAAATTGAAAAAAATTATAAAAATCATAAAAAAATA
Found at i:14118476 original size:29 final size:28
Alignment explanation
Indices: 14118440--14118534 Score: 84
Period size: 28 Copynumber: 3.3 Consensus size: 28
14118430 TTATATTTTA
*
14118440 TATAATTTTCTTACAATTTTATAAAATTT
1 TATAATTTTTTTA-AATTTTATAAAATTT
* * *
14118469 TATAATTTTTTTATATTTCTAT-ATATCT
1 TATAATTTTTTTAAATTT-TATAAAATTT
* *
14118497 TATGATTTTTTTATGATTTTTATAAAATTT
1 TATAATTTTTTTA--AATTTTATAAAATTT
*
14118527 TACAATTT
1 TATAATTT
14118535 ATATATATTT
Statistics
Matches: 51, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
28 20 0.39
29 18 0.35
30 13 0.25
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (28 bp):
TATAATTTTTTTAAATTTTATAAAATTT
Found at i:14118655 original size:27 final size:27
Alignment explanation
Indices: 14118551--14118659 Score: 98
Period size: 25 Copynumber: 4.0 Consensus size: 27
14118541 ATTTACGATT
* *
14118551 TTTATATTTTTTTTCTAATTTTTAATA
1 TTTATAGTTTTTTTATAATTTTTAATA
* *
14118578 TTTGAATA-TTTTTATTAAAATTTAATAATA
1 TTT--ATAGTTTTT-TTATAATTT-TTAATA
* * *
14118608 TTTATAGCTTTTAT-TGA-TTTTAATA
1 TTTATAGTTTTTTTATAATTTTTAATA
14118633 TTTATAGTTTTTTTATAATTTTTAATA
1 TTTATAGTTTTTTTATAATTTTTAATA
14118660 AAAGCAGGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
25 17 0.27
26 4 0.06
27 12 0.19
28 9 0.14
29 14 0.22
30 8 0.12
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (27 bp):
TTTATAGTTTTTTTATAATTTTTAATA
Found at i:14118840 original size:88 final size:90
Alignment explanation
Indices: 14118667--14118840 Score: 264
Period size: 88 Copynumber: 2.0 Consensus size: 90
14118657 ATAAAAGCAG
*
14118667 GGGCTTAATTGATTTTCTTGAAAAAGTTTGAGGGTCTTTTTGATGCATTTTAAAAGTTCAAGTAC
1 GGGCTTAATTGATTTTCTTGAAAAAGTTTGAGGGACTTTTTGATGCATTTTAAAAGTTCAAGTAC
* * * *
14118732 CCAATTGAGTGCAAAGAAAAATAGA
66 CCAAATGAATGAAAAAAAAAATAGA
*
14118757 GGGCTTAATTGCA-TTT-TTGAAAAGGTTTGA-GGACTTTTTGATGCATTTTAAAAGTTCAAGTA
1 GGGCTTAATTG-ATTTTCTTGAAAAAGTTTGAGGGACTTTTTGATGCATTTTAAAAGTTCAAGTA
14118819 CCCAAATGAATGAAAAAAAAAA
65 CCCAAATGAATGAAAAAAAAAA
14118841 GTGACTTAAT
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
88 49 0.64
89 13 0.17
90 14 0.18
91 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (90 bp):
GGGCTTAATTGATTTTCTTGAAAAAGTTTGAGGGACTTTTTGATGCATTTTAAAAGTTCAAGTAC
CCAAATGAATGAAAAAAAAAATAGA
Found at i:14121117 original size:36 final size:36
Alignment explanation
Indices: 14121074--14121142 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
14121064 ATTAGAGTGG
* *
14121074 GAAAGAAAGAGATATGCGAA-AAAGATAGAGAAACAA
1 GAAAGAAAGAGACATG-GAAGAAACATAGAGAAACAA
*
14121110 GAAAGAAATAGACATGGAAGAAACATAGAGAAA
1 GAAAGAAAGAGACATGGAAGAAACATAGAGAAA
14121143 TGAGAGAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 3 0.10
36 26 0.90
ACGTcount: A:0.61, C:0.06, G:0.25, T:0.09
Consensus pattern (36 bp):
GAAAGAAAGAGACATGGAAGAAACATAGAGAAACAA
Found at i:14129046 original size:27 final size:27
Alignment explanation
Indices: 14129016--14129146 Score: 131
Period size: 27 Copynumber: 4.9 Consensus size: 27
14129006 CTATTATTTT
* * * *
14129016 ATATTATGCCACAAAGGCATTCCTTTA
1 ATATTACGCCACAAAGGCTTTTCTTTC
14129043 ATATTACGCCACAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* * *
14129070 ATTTTGCGCCATAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* * * *
14129097 ATATTATG-C-CATATGCTTTTCTTTT
1 ATATTACGCCACAAAGGCTTTTCTTTC
* *
14129122 ATATTACACCACAAAGGTTTTTCTT
1 ATATTACGCCACAAAGGCTTTTCTT
14129147 ATCTGATGTG
Statistics
Matches: 83, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
25 18 0.22
26 2 0.02
27 63 0.76
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (27 bp):
ATATTACGCCACAAAGGCTTTTCTTTC
Found at i:14129138 original size:52 final size:54
Alignment explanation
Indices: 14129012--14129146 Score: 139
Period size: 52 Copynumber: 2.5 Consensus size: 54
14129002 AATTCTATTA
* * *
14129012 TTTTATATTATGCCACAAAGGCATTCCTTTAATATTACGCCACAAAGGCTTTTC
1 TTTTATATTACGCCACAAAGGCTTTTCTTTAATATTACGCCACAAAGGCTTTTC
* * * * * * * *
14129066 TTTCATTTTGCGCCATAAAGGCTTTTCTTTCATATTATG-C-CATATGCTTTTC
1 TTTTATATTACGCCACAAAGGCTTTTCTTTAATATTACGCCACAAAGGCTTTTC
* *
14129118 TTTTATATTACACCACAAAGGTTTTTCTT
1 TTTTATATTACGCCACAAAGGCTTTTCTT
14129147 ATCTGATGTG
Statistics
Matches: 64, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
52 33 0.52
53 1 0.02
54 30 0.47
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.44
Consensus pattern (54 bp):
TTTTATATTACGCCACAAAGGCTTTTCTTTAATATTACGCCACAAAGGCTTTTC
Found at i:14135943 original size:13 final size:13
Alignment explanation
Indices: 14135910--14135955 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
14135900 CCTGCTTTAA
14135910 ATTTTGTTA-TTT
1 ATTTTGTTATTTT
14135922 A--TT-TTATTTT
1 ATTTTGTTATTTT
14135932 ATTTTGTTATTTT
1 ATTTTGTTATTTT
*
14135945 ATTTTATTATT
1 ATTTTGTTATT
14135956 AATTTTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
9 3 0.10
10 6 0.21
12 3 0.10
13 17 0.59
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (13 bp):
ATTTTGTTATTTT
Found at i:14143546 original size:20 final size:20
Alignment explanation
Indices: 14143518--14143571 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
14143508 AATACTATGA
* *
14143518 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
14143538 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
14143558 TCCATTTCATTTAC
1 ACCATTCCATTTAC
14143572 CTAGCATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.46
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:14146769 original size:18 final size:19
Alignment explanation
Indices: 14146714--14146758 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
14146704 TACAAAAAAA
*
14146714 AAAAAT-CAAAATATTTTT
1 AAAAATCCAAAATATTTAT
14146732 AAAAATCCAAAATATTTAT
1 AAAAATCCAAAATATTTAT
14146751 AAAAATCC
1 AAAAATCC
14146759 CATAATTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATCCAAAATATTTAT
Found at i:14146819 original size:20 final size:21
Alignment explanation
Indices: 14146774--14146832 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
14146764 TTTATATTTT
*
14146774 TAAAAAATTATAAAAATTTCA
1 TAAAAAATTATAAAAATATCA
*
14146795 -AAAAAAATATAAATAATAT-A
1 TAAAAAATTATAAA-AATATCA
14146815 TAAAAAAGTTA-AAAAATA
1 TAAAAAA-TTATAAAAATA
14146833 AAAATTTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
20 17 0.53
21 13 0.41
22 2 0.06
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
TAAAAAATTATAAAAATATCA
Found at i:14146867 original size:17 final size:16
Alignment explanation
Indices: 14146829--14146861 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14146819 AAAGTTAAAA
*
14146829 AATAAAAATTTTCTAG
1 AATAAAAATTTTATAG
14146845 AATAAAAATTTTATAG
1 AATAAAAATTTTATAG
14146861 A
1 A
14146862 CTTAAATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (16 bp):
AATAAAAATTTTATAG
Found at i:14147399 original size:27 final size:27
Alignment explanation
Indices: 14147369--14147447 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
14147359 ATTCCATCCG
* * *
14147369 GAGTACGCCACAAAGGCTATTCTTTTA
1 GAGTTCGCCACAAAGGCTTTTCTTTCA
* * *
14147396 GAGTTTGCCACAAAGGATTTTCTTCCA
1 GAGTTCGCCACAAAGGCTTTTCTTTCA
* *
14147423 TAGTTCGCCACAATGGCTTTTCTTT
1 GAGTTCGCCACAAAGGCTTTTCTTT
14147448 ACCGACATGT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
GAGTTCGCCACAAAGGCTTTTCTTTCA
Found at i:14149188 original size:27 final size:27
Alignment explanation
Indices: 14149153--14149231 Score: 92
Period size: 26 Copynumber: 2.9 Consensus size: 27
14149143 CCTTCATGAT
14149153 TCACACACAAAGACGTTCCTTTCATAATG
1 TCAC-CACAAAGACGTTCCTTTCATAA-G
14149182 T-ACCACAAATGA-GTTCCTTTCAT-AG
1 TCACCACAAA-GACGTTCCTTTCATAAG
* *
14149207 TCACCACAAAGGCTTTCCTTTCATA
1 TCACCACAAAGACGTTCCTTTCATA
14149232 TTGCTCTACA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
25 3 0.07
26 19 0.43
27 17 0.39
28 4 0.09
29 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (27 bp):
TCACCACAAAGACGTTCCTTTCATAAG
Found at i:14149227 original size:53 final size:52
Alignment explanation
Indices: 14149153--14149280 Score: 132
Period size: 53 Copynumber: 2.4 Consensus size: 52
14149143 CCTTCATGAT
* *
14149153 TCACACACAAAGACGTTCCTTTCATAATG-TACCACAAATGAGTTCCTTTCATAG
1 TCAC-CACAAAGGC-TTCCTTTCATAATGCT-CCACAAAGGAGTTCCTTTCATAG
* * * * *
14149207 TCACCACAAAGGCTTTCCTTTCATATTGCTCTACAAAGGATTTTCTTTCATAT
1 TCACCACAAAGGC-TTCCTTTCATAATGCTCCACAAAGGAGTTCCTTTCATAG
*
14149260 TGCGCCACAAAGGCTTCCTTT
1 T-CACCACAAAGGCTTCCTTT
14149281 ATCTATCGTG
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
53 47 0.75
54 16 0.25
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.34
Consensus pattern (52 bp):
TCACCACAAAGGCTTCCTTTCATAATGCTCCACAAAGGAGTTCCTTTCATAG
Found at i:14149254 original size:27 final size:27
Alignment explanation
Indices: 14149168--14149280 Score: 104
Period size: 27 Copynumber: 4.3 Consensus size: 27
14149158 CACAAAGACG
* ** * *
14149168 TTCCTTTCATAATGTACCACAAATGAG
1 TTCCTTTCATATTGCGCCACAAAGGAT
* * *
14149195 TTCCTTTCATAGT-CACCACAAAGGCT
1 TTCCTTTCATATTGCGCCACAAAGGAT
* *
14149221 TTCCTTTCATATTGCTCTACAAAGGAT
1 TTCCTTTCATATTGCGCCACAAAGGAT
* *
14149248 TTTCTTTCATATTGCGCCACAAAGG-C
1 TTCCTTTCATATTGCGCCACAAAGGAT
14149274 TTCCTTT
1 TTCCTTT
14149281 ATCTATCGTG
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
26 27 0.38
27 44 0.62
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.37
Consensus pattern (27 bp):
TTCCTTTCATATTGCGCCACAAAGGAT
Found at i:14150673 original size:55 final size:58
Alignment explanation
Indices: 14150609--14150756 Score: 160
Period size: 57 Copynumber: 2.6 Consensus size: 58
14150599 ACAAAAACAT
* * *
14150609 CCTTTTAATAAAGATAGCCACAAAGGCTTCC-TTTAACA-TAGTAGCCAC-AAGGCTG
1 CCTTTTAATAGAGATAGCCACAAAGGCTTCCTTTTAACAGAAATAGCCACAAAGGCTG
* * * * * *
14150664 CCTTTTAATAGAGATAGCTAAAAAGGTTTCCTTTTAACAGAAATAGGCACAAATGCTT
1 CCTTTTAATAGAGATAGCCACAAAGGCTTCCTTTTAACAGAAATAGCCACAAAGGCTG
* * *
14150722 CC-TTTAACAGAGATAGCCACAAAGGATTCTTTTTA
1 CCTTTTAATAGAGATAGCCACAAAGGCTTCCTTTTA
14150757 TAGAGATCAC
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
55 27 0.36
56 7 0.09
57 35 0.46
58 7 0.09
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (58 bp):
CCTTTTAATAGAGATAGCCACAAAGGCTTCCTTTTAACAGAAATAGCCACAAAGGCTG
Found at i:14150696 original size:84 final size:85
Alignment explanation
Indices: 14150608--14150816 Score: 239
Period size: 84 Copynumber: 2.5 Consensus size: 85
14150598 CACAAAAACA
* * *
14150608 TCCTTTTAATAAAGATAGCCACAAAGGCTTCCTTTAACATAG-TAGCCAC-AAGGCTGCCTTTTA
1 TCCTTTTAACAAAGATAGCCACAAAGGCTTCCTTTAACAGAGATAGCCACAAAGGAT-CCTTTTA
*
14150671 ATAGAGAT-AGCTAAAAAGGTT
65 ATAGAGATCA-CCAAAAAGGTT
* * * *
14150692 TCCTTTTAACAGAA-ATAGGCACAAATGCTTCCTTTAACAGAGATAGCCACAAAGGATTCTTTTT
1 TCCTTTTAACA-AAGATAGCCACAAAGGCTTCCTTTAACAGAGATAGCCACAAAGGATCCTTTTA
* *
14150756 ATAGAGATCACCATAAAGTTT
65 ATAGAGATCACCAAAAAGGTT
** *
14150777 TCC-TTTAACAAAGATAGCCATGAAGGCTTCCTTTTACAGA
1 TCCTTTTAACAAAGATAGCCACAAAGGCTTCCTTTAACAGA
14150817 ATCTGCCATA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
83 2 0.02
84 64 0.61
85 33 0.31
86 6 0.06
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (85 bp):
TCCTTTTAACAAAGATAGCCACAAAGGCTTCCTTTAACAGAGATAGCCACAAAGGATCCTTTTAA
TAGAGATCACCAAAAAGGTT
Found at i:14150737 original size:28 final size:29
Alignment explanation
Indices: 14150608--14150816 Score: 173
Period size: 28 Copynumber: 7.4 Consensus size: 29
14150598 CACAAAAACA
* *
14150608 TCCTTTTAATAAAGATAGCCACAAAGGCT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
*
14150637 TCC-TTTAACATAG-TAGCCAC-AAGGCT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
* * * * *
14150663 GCCTTTTAATAGAGATAGCTAAAAAGGTT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
* * *
14150692 TCCTTTTAACAGAAATAGGCACAAATGCT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
*
14150721 TCC-TTTAACAGAGATAGCCACAAAGGAT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
* * * **
14150749 T-CTTTTTATAGAGATCA-CCATAAAGTTT
1 TCCTTTTAACAGAGAT-AGCCACAAAGGCT
* **
14150777 TCC-TTTAACAAAGATAGCCATGAAGGCT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
14150805 TCCTTTT-ACAGA
1 TCCTTTTAACAGA
14150817 ATCTGCCATA
Statistics
Matches: 140, Mismatches: 32, Indels: 17
0.74 0.17 0.09
Matches are distributed among these distances:
26 8 0.06
27 17 0.12
28 78 0.56
29 37 0.26
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (29 bp):
TCCTTTTAACAGAGATAGCCACAAAGGCT
Found at i:14150812 original size:56 final size:56
Alignment explanation
Indices: 14150720--14150829 Score: 141
Period size: 56 Copynumber: 2.0 Consensus size: 56
14150710 GCACAAATGC
* * *
14150720 TTCCTTTAACAGAGATAGCCACAAAGGATTCTTTTTATAGAGATC-ACCATAAAGTT
1 TTCCTTTAACAAAGATAGCCACAAAGGATTCCTTTTACAGA-ATCTACCATAAAGTT
** * *
14150776 TTCCTTTAACAAAGATAGCCATGAAGGCTTCCTTTTACAGAATCTGCCATAAAG
1 TTCCTTTAACAAAGATAGCCACAAAGGATTCCTTTTACAGAATCTACCATAAAG
14150830 GCACTTATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
55 3 0.07
56 43 0.93
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (56 bp):
TTCCTTTAACAAAGATAGCCACAAAGGATTCCTTTTACAGAATCTACCATAAAGTT
Found at i:14159653 original size:51 final size:51
Alignment explanation
Indices: 14159484--14159683 Score: 219
Period size: 51 Copynumber: 3.9 Consensus size: 51
14159474 TGAAAGTGAA
*
14159484 AGTGATGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAA-
1 AGTGATGATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAAT
* * * * *
14159535 A--GATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGAT-GATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
* * * *
14159585 AGCT-TTGATCACGTGTGTAGTACTATGTGCAGGCAACTACGTGTATCGAAT
1 AG-TGATGATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
* * * *
14159636 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACTATGTGAACCG
1 AGTGATGATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
14159684 GTATCATTAA
Statistics
Matches: 120, Mismatches: 23, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
49 5 0.04
50 38 0.32
51 76 0.63
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (51 bp):
AGTGATGATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
Found at i:14159715 original size:101 final size:101
Alignment explanation
Indices: 14159498--14159694 Score: 247
Period size: 101 Copynumber: 2.0 Consensus size: 101
14159488 ATGATCACGT
* *
14159498 GTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGATAGGTCGCATGTGTAGTACTATGTG
1 GTGTAGTACTATGTGCAGGCAACTACGTGTACCAGAAAGATAGGTCACATGTGTAGTACTATGTG
* * * **
14159563 CAGGCTACTATGCGTACCGGATAGCTTTGATCACGT
66 CAGGCTACTATGCGAACCGGATAGCATTAATCACAA
*
14159599 GTGTAGTACTATGTGCAGGCAACTACGTGTATC-GAATAG-TGATGGTCACATGTGTAGTACTAT
1 GTGTAGTACTATGTGCAGGCAACTACGTGTACCAGAA-AGAT-A-GGTCACATGTGTAGTACTAT
* * *
14159662 GTGTAGGCTACTATGTGAACCGG-TATCATTAAT
63 GTGCAGGCTACTATGCGAACCGGATAGCATTAAT
14159695 TATAAGGTGG
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
100 4 0.05
101 41 0.49
102 39 0.46
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (101 bp):
GTGTAGTACTATGTGCAGGCAACTACGTGTACCAGAAAGATAGGTCACATGTGTAGTACTATGTG
CAGGCTACTATGCGAACCGGATAGCATTAATCACAA
Found at i:14159948 original size:37 final size:38
Alignment explanation
Indices: 14159879--14159951 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
14159869 ATGTGTGGAA
* **
14159879 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
14159917 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
14159952 ATTACGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 16 0.52
38 15 0.48
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:14165075 original size:51 final size:50
Alignment explanation
Indices: 14164956--14165076 Score: 134
Period size: 50 Copynumber: 2.4 Consensus size: 50
14164946 AAAGTGATGG
* * *
14164956 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGATAGG
1 TCACGTGTGTAGTACTATGTACAGGCTACTACGCGTACCAGAAAGATAGA
* * * * * * * *
14165006 TCGCATGTGTAGTACTATGTACCGGCTACTATGCGTACCGGATAGCTTTGA
1 TCACGTGTGTAGTACTATGTACAGGCTACTACGCGTACCAGAAAG-ATAGA
14165057 TCACGTGTGTAGTACTATGT
1 TCACGTGTGTAGTACTATGT
14165077 GTAGGCAACT
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
50 37 0.65
51 20 0.35
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTACAGGCTACTACGCGTACCAGAAAGATAGA
Found at i:14165148 original size:102 final size:101
Alignment explanation
Indices: 14164956--14165148 Score: 255
Period size: 101 Copynumber: 1.9 Consensus size: 101
14164946 AAAGTGATGG
* * *
14164956 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCAACTACGTGAACCAGAAAGATAGGTCACATGTGTAGTAC
* *
14165021 TATGTACCGGCTACTATGCGTACCGGATAGCTTTGA
66 TATGTACAGGCTACTATGCGAACCGGATAGCTTTGA
* *
14165057 TCACGTGTGTAGTACTATGTGTAGGCAACTACGTGAATC-GAATAG-TGACGGTCACATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGCAACTACGTGAACCAGAA-AGAT-A-GGTCACATGTGTAG
** *
14165120 TACTATGTGTAGGCTACTATGTGAACCGG
63 TACTATGTACAGGCTACTATGCGAACCGG
14165149 TATCATTAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
100 4 0.05
101 38 0.48
102 37 0.47
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCAACTACGTGAACCAGAAAGATAGGTCACATGTGTAGTAC
TATGTACAGGCTACTATGCGAACCGGATAGCTTTGA
Found at i:14165411 original size:37 final size:38
Alignment explanation
Indices: 14165342--14165414 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
14165332 ATGTGTGGAA
* **
14165342 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
14165380 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
14165415 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 16 0.52
38 15 0.48
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:14171059 original size:26 final size:26
Alignment explanation
Indices: 14171027--14171084 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
14171017 TATTTTATAA
14171027 ATTTCATTATTGAAATGGTATATTAT
1 ATTTCATTATTGAAATGGTATATTAT
14171053 ATTTCATTATTGAAATGGTATATTAT
1 ATTTCATTATTGAAATGGTATATTAT
*
14171079 GTTTCA
1 ATTTCA
14171085 AATTATCGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (26 bp):
ATTTCATTATTGAAATGGTATATTAT
Found at i:14172048 original size:10 final size:10
Alignment explanation
Indices: 14172033--14172079 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
14172023 TAACATGTTG
14172033 AATTTTAATT
1 AATTTTAATT
14172043 AATTTTATAATT
1 AA-TTT-TAATT
*
14172055 AATTTTGATT
1 AATTTTAATT
*
14172065 AATTTTGATT
1 AATTTTAATT
14172075 -ATTTT
1 AATTTT
14172080 CGACAGATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
9 5 0.15
10 16 0.47
11 6 0.18
12 7 0.21
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (10 bp):
AATTTTAATT
Found at i:14172224 original size:22 final size:22
Alignment explanation
Indices: 14172198--14172242 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
14172188 ATTACGTGTA
*
14172198 TTAATTCATAATATAAT-TAATT
1 TTAATT-ATAATACAATCTAATT
*
14172220 TTAATTTTAATACAATCTAATT
1 TTAATTATAATACAATCTAATT
14172242 T
1 T
14172243 GGGTTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATTATAATACAATCTAATT
Found at i:14178777 original size:229 final size:229
Alignment explanation
Indices: 14178376--14178830 Score: 784
Period size: 229 Copynumber: 2.0 Consensus size: 229
14178366 CTAGTGTTTG
14178376 CCAACATCAATGCGTCATAGGCGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATA
1 CCAACATCAATGCGTCATAGGCGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATA
* * *
14178441 CATATTCAAAACTTATCTCGTTTGTCTTATTTCCCTAAATAGTATCTAGACACCAAAGCTTCATC
66 CATATTCAAAACTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCTAGACACCAAAGCTTCATC
* *
14178506 GGGCGAGGTGTTACAATAGCATAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAA
131 GGACGAGGTGTTACAACAGCATAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAA
* *
14178571 CCATCATACTATACTTTTCTAGCTTTGGCATTTT
196 CCAACATACTATAATTTTCTAGCTTTGGCATTTT
* * *
14178605 CCAACATCAATGCGTCATAGGCGTGCTCAGAGGGTTTTTATACTTAGTCTAGTTCTAACACTATA
1 CCAACATCAATGCGTCATAGGCGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATA
* *
14178670 CATATTCAAAAGTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCTAGACACTAAAGCTTCATC
66 CATATTCAAAACTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCTAGACACCAAAGCTTCATC
* *
14178735 GGACGGGGTGTTACAACAGCATAACACGCATTCTATTTTCAACATTCACTCATACAGTTACATAA
131 GGACGAGGTGTTACAACAGCATAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAA
14178800 CCAACATACTATAATTTTCTAGCTTTGGCAT
196 CCAACATACTATAATTTTCTAGCTTTGGCAT
14178831 CATTATTCAA
Statistics
Matches: 212, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
229 212 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (229 bp):
CCAACATCAATGCGTCATAGGCGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATA
CATATTCAAAACTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCTAGACACCAAAGCTTCATC
GGACGAGGTGTTACAACAGCATAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAA
CCAACATACTATAATTTTCTAGCTTTGGCATTTT
Found at i:14185250 original size:13 final size:15
Alignment explanation
Indices: 14185231--14185271 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 15
14185221 CCTATAGGGG
14185231 ACACATGGCTGTG-T
1 ACACATGGCTGTGTT
14185245 -CACATGGCCGTGTGTT
1 ACACATGG-C-TGTGTT
14185261 ACACATGGCTG
1 ACACATGGCTG
14185272 GGACAAACGC
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
13 7 0.30
14 1 0.04
15 6 0.26
16 2 0.09
17 7 0.30
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (15 bp):
ACACATGGCTGTGTT
Found at i:14188536 original size:25 final size:25
Alignment explanation
Indices: 14188508--14188563 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
14188498 AAGTATTATA
*
14188508 CAGAGAACATAAATGTGCTAATAAT
1 CAGAGAACACAAATGTGCTAATAAT
* **
14188533 CAGAGAGCACCGATGTGCTAATAAT
1 CAGAGAACACAAATGTGCTAATAAT
14188558 CAGAGA
1 CAGAGA
14188564 GCACGCTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (25 bp):
CAGAGAACACAAATGTGCTAATAAT
Found at i:14188564 original size:25 final size:25
Alignment explanation
Indices: 14188520--14188567 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
14188510 GAGAACATAA
14188520 ATGTGCTAATAATCAGAGAGCACCG
1 ATGTGCTAATAATCAGAGAGCACCG
14188545 ATGTGCTAATAATCAGAGAGCAC
1 ATGTGCTAATAATCAGAGAGCAC
14188568 GCTAAACTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (25 bp):
ATGTGCTAATAATCAGAGAGCACCG
Found at i:14189615 original size:50 final size:49
Alignment explanation
Indices: 14189522--14189716 Score: 210
Period size: 50 Copynumber: 3.9 Consensus size: 49
14189512 TTTCCTGTAC
* * * * * ** *
14189522 TGCCAATGCCATATCCCAGATATGGTTTTACATGAGAGTTCTCATATCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACA-GGGACCTCTCATATCGG
* * * * *
14189572 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTAC-AGGGACCTCTCATATCGG
* *
14189622 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACA-GGGACCTCTCATATCGG
* *
14189672 TGCCAACGCTATGTCCCAGACATGGTCTTACATGGACCTCTCATA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGACCTCTCATA
14189717 ATTTTAATAA
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 11 0.09
50 112 0.91
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (49 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGACCTCTCATATCGG
Found at i:14189655 original size:100 final size:99
Alignment explanation
Indices: 14189522--14189715 Score: 262
Period size: 100 Copynumber: 1.9 Consensus size: 99
14189512 TTTCCTGTAC
* * * ** * *
14189522 TGCCAATGCCATATCCCAGATATGGTTTTACATGAGAGTTCTCATATCAGTGCCCATGCCATGTC
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATCAGTGCCAACGCCATGTC
*
14189587 CCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
66 CCAGACATGGTCTTAC-AGGGACCTCTCATCTTGG
* * * *
14189622 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCTATGTC
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATCAGTGCCAACGCCATGTC
*
14189687 CCAGACATGGTCTTACATGGACCTCTCAT
66 CCAGACATGGTCTTACAGGGACCTCTCAT
14189716 AATTTTAATA
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
99 11 0.14
100 70 0.86
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (99 bp):
TGCCAACGCCATATCCCAGACATGGTCTTACATGAGACCTCTCATATCAGTGCCAACGCCATGTC
CCAGACATGGTCTTACAGGGACCTCTCATCTTGG
Found at i:14189840 original size:41 final size:41
Alignment explanation
Indices: 14189769--14189856 Score: 117
Period size: 41 Copynumber: 2.2 Consensus size: 41
14189759 CTGCTCACAT
* * *
14189769 ATCA-ATGTCGATGCATGTCCAGACATGGTCTTATAC-GAG
1 ATCACATGCCGATGCATATCCAGACATGGTCTTATACGGAA
*
14189808 ATCACATGCCGATGACATATCCAGATATGGTCTTATACGGAA
1 ATCACATGCCGATG-CATATCCAGACATGGTCTTATACGGAA
14189850 ATCACAT
1 ATCACAT
14189857 ATCACATGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 4 0.10
40 8 0.19
41 21 0.50
42 9 0.21
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (41 bp):
ATCACATGCCGATGCATATCCAGACATGGTCTTATACGGAA
Found at i:14201099 original size:40 final size:40
Alignment explanation
Indices: 14201042--14201233 Score: 230
Period size: 40 Copynumber: 4.8 Consensus size: 40
14201032 ATTTGAATGA
* *
14201042 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTGATTT
*
14201082 GATCCGGGCTAA-ATCCCGAAGGCATTTGTGCTAGTGATTT
1 GATCCGGGCTAAGA-CCCGAAGGCATTCGTGCTAGTGATTT
* *
14201122 GATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTCGTGCTAG-TGATTT
* * *
14201163 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTCGTGCTAG-TGATTT
* *
14201203 G-CCCGGGTTAAGACCCGAAGGCAATT-GTGCT
1 GATCCGGGCTAAGACCCGAAGGC-ATTCGTGCT
14201234 TATGGTAATA
Statistics
Matches: 139, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
40 130 0.94
41 9 0.06
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
GATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTGATTT
Found at i:14203753 original size:27 final size:29
Alignment explanation
Indices: 14203726--14203782 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
14203716 TTGTAAATAG
* *
14203726 AAACTA-ATCTCAGTTACTGATTCTTAGA
1 AAACTAGATATCAATTACTGATTCTTAGA
*
14203754 AAATTAGGATATCAATTACTGATTCTTAG
1 AAACTA-GATATCAATTACTGATTCTTAG
14203783 GAATTAGGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 5 0.21
30 19 0.79
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (29 bp):
AAACTAGATATCAATTACTGATTCTTAGA
Found at i:14208310 original size:56 final size:51
Alignment explanation
Indices: 14208214--14208388 Score: 174
Period size: 50 Copynumber: 3.4 Consensus size: 51
14208204 ATTTGGGTAA
* * * * **
14208214 AGAGATCCCATGTAAGACCATGTCTAGGACATCTCATTGGCATTATTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATCGCGTTGGCA--ACCGAG---ATG
*
14208270 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGC-ACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATCGCGTTGGCAACCGAGATG
* * *
14208320 AGAGGTCCCATGCAAGACCATGTTTGGGACATTGCGTTGGC-ACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATCGCGTTGGCAACCGAGATG
* * *
14208370 AAAGGTCTCATCTAAGACC
1 AGAGGTCCCATGTAAGACC
14208389 GCACCGAGAT
Statistics
Matches: 105, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
50 65 0.62
53 4 0.04
56 36 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (51 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATCGCGTTGGCAACCGAGATG
Found at i:14208325 original size:50 final size:50
Alignment explanation
Indices: 14208267--14208388 Score: 190
Period size: 50 Copynumber: 2.4 Consensus size: 50
14208257 TATTGAGATC
14208267 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* * *
14208317 ATGAGAGGTCCCATGCAAGACCATGTTTGGGACATTGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* * *
14208367 ATGAAAGGTCTCATCTAAGACC
1 ATGAGAGGTCCCATGTAAGACC
14208389 GCACCGAGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 65 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
Found at i:14208395 original size:30 final size:30
Alignment explanation
Indices: 14208359--14208418 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
14208349 CATTGCGTTG
*
14208359 GCACCGAGATGAAAGGTCTCATCTAAGACC
1 GCACCGAGATGAAAGGTCCCATCTAAGACC
* *
14208389 GCACCGAGATGAGAGGTCCCATGTAAGACC
1 GCACCGAGATGAAAGGTCCCATCTAAGACC
14208419 ATTTCTTGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.15
Consensus pattern (30 bp):
GCACCGAGATGAAAGGTCCCATCTAAGACC
Found at i:14208442 original size:80 final size:80
Alignment explanation
Indices: 14208309--14208468 Score: 232
Period size: 80 Copynumber: 2.0 Consensus size: 80
14208299 CATGGCGTTG
*
14208309 GCACCGAGATGAGAGGTCCCATGCAAGACCATGTTTGGGACATTGCGTTGGCACCGAGATGAAAG
1 GCACCGAGATGAGAGGTCCCATGCAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAAAG
* *
14208374 GTCTCATCTAAGACC
66 ATCACATCTAAGACC
* * * *
14208389 GCACCGAGATGAGAGGTCCCATGTAAGACCAT-TTCTTGGACATGGTGTTGGCACCGAGATGAGA
1 GCACCGAGATGAGAGGTCCCATGCAAGACCATGTT-TGGGACATGGCGTTGGCACCGAGATGAAA
*
14208453 GATCACATGTAAGACC
65 GATCACATCTAAGACC
14208469 CTGTTTGGGA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 2 0.03
80 69 0.97
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.21
Consensus pattern (80 bp):
GCACCGAGATGAGAGGTCCCATGCAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAAAG
ATCACATCTAAGACC
Found at i:14208464 original size:50 final size:50
Alignment explanation
Indices: 14208389--14208588 Score: 201
Period size: 50 Copynumber: 4.0 Consensus size: 50
14208379 ATCTAAGACC
* * **
14208389 GCACCGAGATGAGAGGTCCCATGTAAGACCATTTCTTGGACATGGTGTTG
1 GCACCGAGATGAGAGATCCCATGTAAGACCATTTCTAGGACATGGCATTG
* * *
14208439 GCACCGAGATGAGAGATCACATGTAAGACCCTGTT-TGGGACATGGCATTG
1 GCACCGAGATGAGAGATCCCATGTAAGACCAT-TTCTAGGACATGGCATTG
** * *
14208489 GCACC-AGATGAGACG-TCCCCCGTAAGACCATGTCTAGGACATGGCATGG
1 GCACCGAGATGAGA-GATCCCATGTAAGACCATTTCTAGGACATGGCATTG
* * * * *
14208538 GCACCTATATGAGA-ACTCTCATGTAAGACCATATCTAGGATATGGCATTG
1 GCACCGAGATGAGAGA-TCCCATGTAAGACCATTTCTAGGACATGGCATTG
14208588 G
1 G
14208589 ATGTACAAGA
Statistics
Matches: 124, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
48 1 0.01
49 38 0.31
50 83 0.67
51 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
GCACCGAGATGAGAGATCCCATGTAAGACCATTTCTAGGACATGGCATTG
Found at i:14208583 original size:99 final size:100
Alignment explanation
Indices: 14208389--14208588 Score: 233
Period size: 99 Copynumber: 2.0 Consensus size: 100
14208379 ATCTAAGACC
* * * * ** *
14208389 GCACCGAGATGAGAGGTCCCATGTAAGACCATTTCTTGGACATGGTGTTGGCACCGAGATGAGAG
1 GCACCGAGATGAGACGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATGAGAG
* * * *
14208454 ATCACATGTAAGACCCTGTTTGGGACATGGCATTG
66 ATCACATGTAAGACCATATCTAGGACATGGCATTG
* * *
14208489 GCACC-AGATGAGACGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCTATATGAGA-
1 GCACCGAGATGAGACGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATGAGAG
* *
14208552 ACTCTCATGTAAGACCATATCTAGGATATGGCATTG
66 A-TCACATGTAAGACCATATCTAGGACATGGCATTG
14208588 G
1 G
14208589 ATGTACAAGA
Statistics
Matches: 83, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
98 1 0.01
99 77 0.93
100 5 0.06
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (100 bp):
GCACCGAGATGAGACGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGATGAGAG
ATCACATGTAAGACCATATCTAGGACATGGCATTG
Found at i:14214918 original size:50 final size:50
Alignment explanation
Indices: 14214819--14215055 Score: 294
Period size: 50 Copynumber: 4.6 Consensus size: 50
14214809 AAAGAGATCC
* *
14214819 CATGTAAAACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGGTCT
* *
14214875 CATGTAAGACAATGTTTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
*
14214925 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
** * * **
14214975 CCCGTAAGACCATGTCTGGGACATGGCATTGGCACCTATATGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
* * *
14215025 CATGTAAGACCATATTTGGGATATGGCATTG
1 CATGTAAGACCATGTCTGGGACATGGCATTG
14215056 ATAGTACAAG
Statistics
Matches: 162, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
50 127 0.78
53 3 0.02
55 1 0.01
56 31 0.19
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
Found at i:14235138 original size:12 final size:12
Alignment explanation
Indices: 14235121--14235161 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
14235111 TCAGGCTATT
14235121 ACACGATCTAGC
1 ACACGATCTAGC
*
14235133 ACACGATCTAAC
1 ACACGATCTAGC
*
14235145 ACACGACCTAGC
1 ACACGATCTAGC
14235157 ACACG
1 ACACG
14235162 GGTGTGTGCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.37, C:0.37, G:0.15, T:0.12
Consensus pattern (12 bp):
ACACGATCTAGC
Found at i:14243771 original size:19 final size:19
Alignment explanation
Indices: 14243749--14243786 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
14243739 TCAATCATCC
14243749 CTCATCCCATCATT-TCTCA
1 CTCAT-CCATCATTCTCTCA
*
14243768 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
14243787 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:14245955 original size:20 final size:20
Alignment explanation
Indices: 14245932--14245978 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
14245922 GGGTTAAGAT
*
14245932 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
14245952 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
14245972 TGAGCTG
1 TGAGCTG
14245979 GAAACAAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:14247697 original size:48 final size:48
Alignment explanation
Indices: 14247642--14247745 Score: 133
Period size: 48 Copynumber: 2.2 Consensus size: 48
14247632 TTGTCTTTTC
*
14247642 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
14247690 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
14247738 TTTCTTTT
1 TTTCTTTT
14247746 CCATGACACT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 38 0.76
49 8 0.16
50 4 0.08
ACGTcount: A:0.14, C:0.24, G:0.02, T:0.60
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:14248826 original size:29 final size:27
Alignment explanation
Indices: 14248793--14248859 Score: 82
Period size: 29 Copynumber: 2.4 Consensus size: 27
14248783 TTTAACTTGA
**
14248793 TTTTTTTTTTGCTC-ACCTTTTTTTTCTT
1 TTTTTTTTTTGCTCGA--TTTTTTTTCAC
14248821 TCTTTTTTTTTGCTCGATTTTTTTTCAC
1 T-TTTTTTTTTGCTCGATTTTTTTTCAC
14248849 TTTTTTTTTTG
1 TTTTTTTTTTG
14248860 AATTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 10 0.29
28 11 0.31
29 13 0.37
30 1 0.03
ACGTcount: A:0.04, C:0.15, G:0.06, T:0.75
Consensus pattern (27 bp):
TTTTTTTTTTGCTCGATTTTTTTTCAC
Found at i:14258713 original size:20 final size:20
Alignment explanation
Indices: 14258690--14258755 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
14258680 TGTCGAAGTA
14258690 CAAACAGGGGCACGTACGTG
1 CAAACAGGGGCACGTACGTG
* * * *
14258710 CAAATAGGGGTACCG-AAGTA
1 CAAACAGGGGCA-CGTACGTG
*
14258730 CAAATAGGGGCACGTATC-TG
1 CAAACAGGGGCACGTA-CGTG
14258750 CAAACA
1 CAAACA
14258756 TTCAATAATT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
19 2 0.06
20 31 0.89
21 2 0.06
ACGTcount: A:0.36, C:0.21, G:0.29, T:0.14
Consensus pattern (20 bp):
CAAACAGGGGCACGTACGTG
Found at i:14262652 original size:27 final size:27
Alignment explanation
Indices: 14262622--14262798 Score: 169
Period size: 27 Copynumber: 6.5 Consensus size: 27
14262612 ATATTGAGCC
* *
14262622 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
14262649 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
14262676 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
14262704 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
14262731 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
14262758 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
14262785 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14262799 CGCACAATTT
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:14262761 original size:82 final size:81
Alignment explanation
Indices: 14262643--14262802 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 81
14262633 TGCTATATAA
* * *
14262643 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
14262708 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
14262725 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
14262789 CACTTAGTGCCGCA
65 CACTTAGTGCCGCA
14262803 CAATTTAATC
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
81 23 0.33
82 47 0.67
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:14290920 original size:14 final size:14
Alignment explanation
Indices: 14290901--14290934 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
14290891 TTGCCATTTC
14290901 ATTATTATATTGTT
1 ATTATTATATTGTT
14290915 ATTATTATATTGTT
1 ATTATTATATTGTT
14290929 ATTATT
1 ATTATT
14290935 TGGATATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
ATTATTATATTGTT
Found at i:14299733 original size:20 final size:20
Alignment explanation
Indices: 14299708--14299747 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
14299698 TTCTCAATAT
14299708 TCTCCATTATCTTTGATTGA
1 TCTCCATTATCTTTGATTGA
14299728 TCTCCATTATCTTTGATTGA
1 TCTCCATTATCTTTGATTGA
14299748 GAATAATCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (20 bp):
TCTCCATTATCTTTGATTGA
Found at i:14308317 original size:40 final size:40
Alignment explanation
Indices: 14308219--14308521 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
14308209 TCCTCGTTCA
* * * * *
14308219 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
14308258 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14308298 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14308338 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14308378 AATGCCTTCGGGACTTAACCCGGATATAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
14308418 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
14308458 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
14308498 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14308522 CAGCATTCAA
Statistics
Matches: 236, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.16
40 191 0.81
41 8 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:14325059 original size:3 final size:3
Alignment explanation
Indices: 14325051--14325076 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14325041 TTCAGAAGCT
14325051 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
14325077 TAGCCAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14328660 original size:30 final size:30
Alignment explanation
Indices: 14328626--14328714 Score: 126
Period size: 30 Copynumber: 3.0 Consensus size: 30
14328616 TCGTACTTCC
* *
14328626 TTTTTCATTTTTTAATAAATGATTCAATTT
1 TTTTTCATTTTTTAATAAATGACTCAATAT
14328656 TTTTTCATTTTTTAATAAATGACTCAATAT
1 TTTTTCATTTTTTAATAAATGACTCAATAT
* **
14328686 TTTTAC-TTTTTGCATAAATGACTCAATAT
1 TTTTTCATTTTTTAATAAATGACTCAATAT
14328715 GTTTATGCTT
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
29 21 0.39
30 33 0.61
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (30 bp):
TTTTTCATTTTTTAATAAATGACTCAATAT
Found at i:14328688 original size:29 final size:29
Alignment explanation
Indices: 14328626--14328714 Score: 117
Period size: 29 Copynumber: 3.0 Consensus size: 29
14328616 TCGTACTTCC
* *
14328626 TTTTTCATTTTTTAATAAATGATTCAATTT
1 TTTTTCATTTTTTAATAAATGACTCAA-TA
14328656 TTTTTCATTTTTTAATAAATGACTCAATA
1 TTTTTCATTTTTTAATAAATGACTCAATA
**
14328685 TTTTT-ACTTTTTGCATAAATGACTCAATA
1 TTTTTCA-TTTTTTAATAAATGACTCAATA
14328714 T
1 T
14328715 GTTTATGCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
28 1 0.02
29 27 0.50
30 26 0.48
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (29 bp):
TTTTTCATTTTTTAATAAATGACTCAATA
Found at i:14330427 original size:3 final size:3
Alignment explanation
Indices: 14330419--14330472 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
14330409 CTAGAAGTTT
14330419 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14330467 TAA TAA
1 TAA TAA
14330473 ATAAGCAATA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14333885 original size:40 final size:40
Alignment explanation
Indices: 14333782--14333925 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
14333772 TACTCGAATG
*
14333782 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * * *
14333823 ACATCCAGACTATGAT-CC-AAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
14333862 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
14333902 ATATACGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
14333926 CTTGTGCGAG
Statistics
Matches: 85, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 19 0.22
40 52 0.61
41 12 0.14
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:14341759 original size:40 final size:40
Alignment explanation
Indices: 14341661--14342006 Score: 423
Period size: 40 Copynumber: 8.6 Consensus size: 40
14341651 TCCTCGTTCA
* * * * *
14341661 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
14341700 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14341740 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14341780 AATGCCTTCGGGACTTAACCCGGATTTAATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAA--T---AACTCGCACG
14341825 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14341865 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
14341905 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
14341944 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
*
14341984 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14342007 CAGCATTCAA
Statistics
Matches: 279, Mismatches: 19, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
39 88 0.32
40 146 0.52
41 5 0.02
43 1 0.00
45 39 0.14
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:14341835 original size:85 final size:85
Alignment explanation
Indices: 14341661--14341954 Score: 405
Period size: 85 Copynumber: 3.6 Consensus size: 85
14341651 TCCTCGTTCA
* * * * * *
14341661 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG--
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
14341723 ---ATTTAACAACTCGCACG
66 TTAATTTAACAACTCGCACG
*
14341740 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
14341805 TTAATTTAACAACTCGCACG
66 TTAATTTAACAACTCGCACG
14341825 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
14341890 TTAA--T---AACTCGCACG
66 TTAATTTAACAACTCGCACG
* * * *
14341905 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGG
14341955 ATCTTAGTCC
Statistics
Matches: 197, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
79 70 0.36
80 41 0.21
83 1 0.01
85 85 0.43
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (85 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
TTAATTTAACAACTCGCACG
Found at i:14341850 original size:125 final size:123
Alignment explanation
Indices: 14341691--14341931 Score: 428
Period size: 125 Copynumber: 1.9 Consensus size: 123
14341681 CGGTTTTAGT
14341691 AACTCACACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCACACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
14341756 AACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATTTAAC
66 AACCCGGATTTAACAACTCGCACGAATGCCTTC-GGACTTAACCCGGATTTAATTTAAC
* * *
14341815 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACT
1 AACTCACAC-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACT
*
14341880 TAACCCGGATTTAATAACTCGCACGAATGCCTTCGGACTTAACCCGGATTTA
65 TAACCCGGATTTAACAACTCGCACGAATGCCTTCGGACTTAACCCGGATTTA
14341932 GTATCTCGCA
Statistics
Matches: 112, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
124 26 0.23
125 86 0.77
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (123 bp):
AACTCACACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
AACCCGGATTTAACAACTCGCACGAATGCCTTCGGACTTAACCCGGATTTAATTTAAC
Found at i:14341997 original size:79 final size:80
Alignment explanation
Indices: 14341661--14342006 Score: 407
Period size: 79 Copynumber: 4.3 Consensus size: 80
14341651 TCCTCGTTCA
* * * * * *
14341661 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
14341725 TTA-ACAACTCGCACG
66 TTATTC-ACTCGCACG
*
14341740 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
14341805 TTAATTTAACAACTCGCACG
66 TT-A-TT--C-ACTCGCACG
14341825 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
* *
14341890 TTAATAACTCGCACG
66 TTATTCACTCGCACG
* * * * **
14341905 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA
* *
14341968 TATATTCACTTAGCAC-
65 TTTATTCAC-TCGCACG
*
14341984 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14342007 CAGCATTCAA
Statistics
Matches: 236, Mismatches: 22, Indels: 18
0.86 0.08 0.07
Matches are distributed among these distances:
78 9 0.04
79 98 0.42
80 49 0.21
81 1 0.00
83 1 0.00
84 1 0.00
85 77 0.33
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
TTATTCACTCGCACG
Found at i:14349773 original size:40 final size:40
Alignment explanation
Indices: 14349675--14349977 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
14349665 TCCTCGTTCA
* * * * *
14349675 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
14349714 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14349754 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14349794 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
14349834 AATGCCTTCGGGACTTAACCCGGATATAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
14349874 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
14349914 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
14349954 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14349978 CAGCATTCAA
Statistics
Matches: 236, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.16
40 191 0.81
41 8 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:14358334 original size:43 final size:43
Alignment explanation
Indices: 14358221--14358335 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 43
14358211 TATGATTTCG
14358221 TGTAAGACCACATCTGGGACGTTGGCATCGATTTAAGATTTACA
1 TGTAAGACCACATCTGGGACGTTGGCATCGATTT-AGATTTACA
* *
14358265 TGTAAGACC-CTGTCTAGGACAG-TGGCATCGTTATTT-GA-TTACA
1 TGTAAGACCAC-ATCTGGGAC-GTTGGCATCG--ATTTAGATTTACA
14358308 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
14358336 TGTACGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
42 1 0.02
43 28 0.46
44 27 0.44
45 1 0.02
46 4 0.07
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGATTTAGATTTACA
Found at i:14360665 original size:3 final size:3
Alignment explanation
Indices: 14360657--14360683 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
14360647 ATAACACTTA
14360657 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
14360684 ACTTCTAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14365467 original size:22 final size:20
Alignment explanation
Indices: 14365423--14365498 Score: 79
Period size: 21 Copynumber: 3.9 Consensus size: 20
14365413 TAATAATACC
14365423 AAAAAAAAGAAAGAAAAA-G
1 AAAAAAAAGAAAGAAAAAGG
*
14365442 --AAAAGAGAAAGGAAAATAGG
1 AAAAAAAAGAAA-GAAAA-AGG
*
14365462 AAAAAAAAGAAAGAGAAAGG
1 AAAAAAAAGAAAGAAAAAGG
14365482 AAAAAAAAAGAAA-AAAA
1 -AAAAAAAAGAAAGAAAA
14365499 TAACTTAAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
17 9 0.19
18 5 0.11
19 1 0.02
20 7 0.15
21 16 0.34
22 9 0.19
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.01
Consensus pattern (20 bp):
AAAAAAAAGAAAGAAAAAGG
Found at i:14365495 original size:28 final size:29
Alignment explanation
Indices: 14365425--14365497 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
14365415 ATAATACCAA
14365425 AAAAAAGAAAG-AAAAAGAAAAGAGAAAGG
1 AAAAAA-AAAGAAAAAAGAAAAGAGAAAGG
**
14365454 AAAATAGGAA-AAAAAAG-AAAGAGAAAGG
1 AAAA-AAAAAGAAAAAAGAAAAGAGAAAGG
14365482 AAAAAAAAAGAAAAAA
1 AAAAAAAAAGAAAAAA
14365498 ATAACTTAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
27 3 0.08
28 21 0.57
29 12 0.32
30 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (29 bp):
AAAAAAAAAGAAAAAAGAAAAGAGAAAGG
Found at i:14369762 original size:22 final size:22
Alignment explanation
Indices: 14369732--14369773 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14369722 AGACCAAAAC
*
14369732 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
*
14369754 AGGCCTTTAGTGGCGCTTTT
1 AGGCCTTTAGCGGCGCTTTT
14369774 AAGCGCCGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.43
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:14370003 original size:43 final size:43
Alignment explanation
Indices: 14369871--14370201 Score: 454
Period size: 43 Copynumber: 7.8 Consensus size: 43
14369861 AGAAATAAAT
14369871 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
14369914 GCCGCTAAAAACC----CCTTTAGCGGCGCTTTTCCCTCAATC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * *
14369953 ACTGCTAAAGACAATGACCTTTAGCGGCGGTTTTACCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
*
14369996 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTACCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
** *
14370039 GCCGCTAAAGACCATGACCTTTAGCGGCAATTTTCCCACAAGC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
14370082 GCCGCTAAGGACCATGACCTTTAGCAGTGCTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
14370125 TCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCTACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
14370168 GCCGCTAAAGACCATGACTTTTAGTGGCGTTTTT
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTT
14370202 AAAAAACACC
Statistics
Matches: 250, Mismatches: 34, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
39 33 0.13
43 217 0.87
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:14370418 original size:19 final size:19
Alignment explanation
Indices: 14370394--14370431 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14370384 GCAAAAATGT
*
14370394 TAAAAGTTAAAATGATAAA
1 TAAAAGTCAAAATGATAAA
14370413 TAAAAGTCAAAATGATAAA
1 TAAAAGTCAAAATGATAAA
14370432 AATATTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.24
Consensus pattern (19 bp):
TAAAAGTCAAAATGATAAA
Found at i:14376198 original size:34 final size:34
Alignment explanation
Indices: 14376155--14376276 Score: 147
Period size: 34 Copynumber: 3.6 Consensus size: 34
14376145 AAGTTATTTA
* *
14376155 TGTATTATGTAAGCTATGTAAGCTATGTAAGTGT
1 TGTATTATGTAAGTTATGTAAGTTATGTAAGTGT
* * *
14376189 TGTATTATGTAAGTTATATAAGTTATGTAGACT-A
1 TGTATTATGTAAGTTATGTAAGTTATGTA-AGTGT
* * * *
14376223 TGTATTATGCAAGTTATTTAAGTTGTGCAAGTGT
1 TGTATTATGTAAGTTATGTAAGTTATGTAAGTGT
14376257 TGTATTATGTAAGTTATGTA
1 TGTATTATGTAAGTTATGTA
14376277 TTATATAAGT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
33 2 0.03
34 69 0.95
35 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.44
Consensus pattern (34 bp):
TGTATTATGTAAGTTATGTAAGTTATGTAAGTGT
Found at i:14376293 original size:68 final size:68
Alignment explanation
Indices: 14376122--14376294 Score: 197
Period size: 68 Copynumber: 2.5 Consensus size: 68
14376112 TATTAAGTAA
* * *
14376122 ATTATGTAAGTTATGTATTACATAAGTTATTTATGTATTATGTAAGCTATGTAAGCTATGTAAGT
1 ATTATGTAAGTTATGTATTATATAAG-T-TTTATGTATTATGCAAGCTATGTAAGCTATGCAAGT
14376187 GTTGT
64 GTTGT
* * ** * * * *
14376192 ATTATGTAAGTTATATAAGTTATGT-AG-ACTATGTATTATGCAAGTTATTTAAGTTGTGCAAGT
1 ATTATGTAAGTTATGT-A-TTATATAAGTTTTATGTATTATGCAAGCTATGTAAGCTATGCAAGT
14376255 GTTGT
64 GTTGT
14376260 ATTATGTAAGTTATGTATTATATAAGTTTTATGTA
1 ATTATGTAAGTTATGTATTATATAAGTTTTATGTA
14376295 AAATATGTAA
Statistics
Matches: 84, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
66 5 0.06
67 3 0.04
68 54 0.64
70 15 0.18
71 3 0.04
72 4 0.05
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.46
Consensus pattern (68 bp):
ATTATGTAAGTTATGTATTATATAAGTTTTATGTATTATGCAAGCTATGTAAGCTATGCAAGTGT
TGT
Found at i:14376401 original size:34 final size:35
Alignment explanation
Indices: 14376261--14376612 Score: 163
Period size: 34 Copynumber: 10.3 Consensus size: 35
14376251 AAGTGTTGTA
* * *
14376261 TTATGTAAGT-TATGTATTATATAAGTTTTATGTAAA
1 TTATGTAAGTGTATGTATTATGTAAG--CTATGTAAG
* * * *
14376297 ATATGTAAGTTGTAT-T-TTATGAAAGTTATATAAG
1 TTATGTAAG-TGTATGTATTATGTAAGCTATGTAAG
* * *
14376331 TTATGT-AG-GCTATGTATTATGCAAGTTATTTAAG
1 TTATGTAAGTG-TATGTATTATGTAAGCTATGTAAG
* *
14376365 TTGTGTAAGTGT-TGTATTATGTAAGATATGTAAG
1 TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
* * * *
14376399 -T-TGT-ATTTTATGTAAGTTCTGT-A-CTATGTATG
1 TTATGTAAGTGTATGT-A-TTATGTAAGCTATGTAAG
* **
14376431 TTATGTAAGT-TGTGTAGAATGTAAGCTATGTAAG
1 TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
* *
14376465 TTATGTAAGTG-GTGTATTATGTAAGTTATGTAAG
1 TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
* * *
14376499 TTATGTAAGTTATTATGTAAGTTATGCAAGCTTATATATAAG
1 TTATGTAAG-T-GTATGT-A-TTATGTAAGC---TATGTAAG
* *
14376541 TTATGT-A-T-TATGTTATTATGT-A-TTATGTAAT
1 TTATGTAAGTGTATG-TATTATGTAAGCTATGTAAG
* * *
14376572 TTAT-TATGT-TAT-TA-TATATAAGATATGTAAG
1 TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
14376603 TTATGTAAGT
1 TTATGTAAGT
14376613 TATTATGTAA
Statistics
Matches: 246, Mismatches: 40, Indels: 64
0.70 0.11 0.18
Matches are distributed among these distances:
29 4 0.02
30 4 0.02
31 25 0.10
32 27 0.11
33 9 0.04
34 111 0.45
35 7 0.03
36 21 0.09
37 10 0.04
38 5 0.02
39 9 0.04
41 1 0.00
42 13 0.05
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (35 bp):
TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
Found at i:14376453 original size:41 final size:41
Alignment explanation
Indices: 14376368--14376455 Score: 97
Period size: 41 Copynumber: 2.1 Consensus size: 41
14376358 ATTTAAGTTG
* ***
14376368 TGTAAGTGTTGTATTATGTAAGATATGTAAGTTGTATTTTA
1 TGTAAGTGTTGTACTATGTAAGATATGTAAGTTGTATAGAA
* * *
14376409 TGTAAGT-TCTGTACTATGTATGTTATGTAAGTTGTGTAGAA
1 TGTAAGTGT-TGTACTATGTAAGATATGTAAGTTGTATAGAA
14376450 TGTAAG
1 TGTAAG
14376456 CTATGTAAGT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 1 0.03
41 38 0.97
ACGTcount: A:0.28, C:0.02, G:0.24, T:0.45
Consensus pattern (41 bp):
TGTAAGTGTTGTACTATGTAAGATATGTAAGTTGTATAGAA
Found at i:14376505 original size:25 final size:27
Alignment explanation
Indices: 14376078--14376615 Score: 222
Period size: 25 Copynumber: 20.9 Consensus size: 27
14376068 AAATTAAATG
* * *
14376078 AGTTATGTAAGTTATGATATGATATAT-
1 AGTTATGTAAGTTATG-TAAGTTATGTA
* * *
14376105 ATTTATGT-A-TTAAGTAAATTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
** *
14376130 AGTTATGT-A-TTACATAAGTTATTTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* * *
14376155 TGTATTATGTAAGCTATGTAAGCTATGTA
1 AG--TTATGTAAGTTATGTAAGTTATGTA
*
14376184 AGTGT-TGT-A-TTATGTAAGTTATATA
1 AGT-TATGTAAGTTATGTAAGTTATGTA
* *
14376209 AGTTATGT-AGACTATGT-A-TTATGCA
1 AGTTATGTAAG-TTATGTAAGTTATGTA
* * *
14376234 AGTTATTTAAGTTGTGCAAGTGT-TGT-
1 AGTTATGTAAGTTATGTAAGT-TATGTA
*
14376260 A-TTATGTAAGTTATGT-A-TTATATA
1 AGTTATGTAAGTTATGTAAGTTATGTA
**
14376284 AGTTTTATGTAAAATATGTAAG-T-TGTA
1 AG--TTATGTAAGTTATGTAAGTTATGTA
** * *
14376311 TTTTATGAAAGTTATATAAGTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* * * *
14376338 GGCTATGT-A-TTATGCAAGTTATTTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
*
14376363 AGTTGTGTAAGTGT-TGT-A-TTATGTA
1 AGTTATGTAAGT-TATGTAAGTTATGTA
* **
14376388 AGATATGTAAG-T-TGTATTTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* * *
14376413 AGTTCTGT-A-CTATGTATGTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* * *
14376438 AGTTGTGT-AG-AATGTAAGCTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
**
14376463 AGTTATGTAAGTGGTGT-A-TTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
14376488 AGTTATGTAAGTTATGTAAGTTATTATGTA
1 AGTTATGTAAGTTATGTAAG---TTATGTA
* *
14376518 AGTTATGCAAGCTTATATATAAGTTATGT-
1 AGTTATGTAAG--T-TATGTAAGTTATGTA
*
14376547 A-TTATGTTA-TTATGT-A-TTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* * *
14376570 ATTTAT-TATGTTAT-T-A--TATATA
1 AGTTATGTAAGTTATGTAAGTTATGTA
*
14376592 AGATATGTAAGTTATGTAAGTTAT
1 AGTTATGTAAGTTATGTAAGTTAT
14376616 TATGTAAGTT
Statistics
Matches: 382, Mismatches: 81, Indels: 96
0.68 0.14 0.17
Matches are distributed among these distances:
22 16 0.04
23 19 0.05
24 24 0.06
25 194 0.51
26 15 0.04
27 58 0.15
28 12 0.03
29 13 0.03
30 23 0.06
32 1 0.00
33 7 0.02
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (27 bp):
AGTTATGTAAGTTATGTAAGTTATGTA
Found at i:14376516 original size:12 final size:12
Alignment explanation
Indices: 14376499--14376627 Score: 60
Period size: 12 Copynumber: 12.1 Consensus size: 12
14376489 GTTATGTAAG
14376499 TTATGTAAGTTA
1 TTATGTAAGTTA
14376511 TTATGTAAG---
1 TTATGTAAGTTA
*
14376520 TTATGCAAGCTTA
1 TTATGTAAG-TTA
*
14376533 -TATATAAGTTA
1 TTATGTAAGTTA
*
14376544 TGTAT-TATGTTA
1 T-TATGTAAGTTA
14376556 TTA--T--G-TA
1 TTATGTAAGTTA
*
14376563 TTATGTAATTTA
1 TTATGTAAGTTA
*
14376575 TTATGTTA-TTA
1 TTATGTAAGTTA
*
14376586 -TATATAAG--A
1 TTATGTAAGTTA
14376595 -TATGTAAG---
1 TTATGTAAGTTA
14376603 TTATGTAAGTTA
1 TTATGTAAGTTA
14376615 TTATGTAAGTTA
1 TTATGTAAGTTA
14376627 T
1 T
14376628 GCAAGCTTAT
Statistics
Matches: 92, Mismatches: 9, Indels: 32
0.69 0.07 0.24
Matches are distributed among these distances:
7 5 0.05
8 1 0.01
9 25 0.27
10 6 0.07
11 8 0.09
12 44 0.48
13 3 0.03
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.50
Consensus pattern (12 bp):
TTATGTAAGTTA
Found at i:14376559 original size:8 final size:7
Alignment explanation
Indices: 14376541--14376586 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
14376531 TATATATAAG
14376541 TTATGTA
1 TTATGTA
14376548 TTATGTTA
1 TTATG-TA
14376556 TTATGTA
1 TTATGTA
14376563 TTATGTA
1 TTATGTA
*
14376570 --ATTTA
1 TTATGTA
14376575 TTATGTTA
1 TTATG-TA
14376583 TTAT
1 TTAT
14376587 ATATAAGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:14376561 original size:15 final size:15
Alignment explanation
Indices: 14376541--14376586 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
14376531 TATATATAAG
14376541 TTATGTATTATGTTA
1 TTATGTATTATGTTA
14376556 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
14376570 --ATTTATTATGTTA
1 TTATGTATTATGTTA
14376583 TTAT
1 TTAT
14376587 ATATAAGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Found at i:14376628 original size:9 final size:9
Alignment explanation
Indices: 14376078--14376615 Score: 222
Period size: 9 Copynumber: 62.7 Consensus size: 9
14376068 AAATTAAATG
14376078 AGTTATGTA
1 AGTTATGTA
14376087 AGTTATGATA
1 AGTTATG-TA
* * *
14376097 TGATATAT-
1 AGTTATGTA
*
14376105 ATTTATGT-
1 AGTTATGTA
*
14376113 A-TTAAGTA
1 AGTTATGTA
*
14376121 AATTATGTA
1 AGTTATGTA
14376130 AGTTATGT-
1 AGTTATGTA
**
14376138 A-TTACATA
1 AGTTATGTA
*
14376146 AGTTATTTA
1 AGTTATGTA
*
14376155 TGTATTATGTA
1 AG--TTATGTA
*
14376166 AGCTATGTA
1 AGTTATGTA
*
14376175 AGCTATGTA
1 AGTTATGTA
14376184 AGTGT-TGT-
1 AGT-TATGTA
14376192 A-TTATGTA
1 AGTTATGTA
*
14376200 AGTTATATA
1 AGTTATGTA
14376209 AGTTATGT-
1 AGTTATGTA
*
14376217 AGACTATGT-
1 AG-TTATGTA
*
14376226 A-TTATGCA
1 AGTTATGTA
*
14376234 AGTTATTTA
1 AGTTATGTA
* *
14376243 AGTTGTGCA
1 AGTTATGTA
14376252 AGTGT-TGT-
1 AGT-TATGTA
14376260 A-TTATGTA
1 AGTTATGTA
14376268 AGTTATGT-
1 AGTTATGTA
*
14376276 A-TTATATA
1 AGTTATGTA
14376284 AGTTTTATGTA
1 AG--TTATGTA
**
14376295 AAATATGTA
1 AGTTATGTA
14376304 AG-T-TGTA
1 AGTTATGTA
** *
14376311 TTTTATGAA
1 AGTTATGTA
*
14376320 AGTTATATA
1 AGTTATGTA
14376329 AGTTATGTA
1 AGTTATGTA
* *
14376338 GGCTATGT-
1 AGTTATGTA
*
14376346 A-TTATGCA
1 AGTTATGTA
*
14376354 AGTTATTTA
1 AGTTATGTA
*
14376363 AGTTGTGTA
1 AGTTATGTA
14376372 AGTGT-TGT-
1 AGT-TATGTA
14376380 A-TTATGTA
1 AGTTATGTA
*
14376388 AGATATGTA
1 AGTTATGTA
14376397 AG-T-TGTA
1 AGTTATGTA
**
14376404 TTTTATGTA
1 AGTTATGTA
*
14376413 AGTTCTGT-
1 AGTTATGTA
*
14376421 A-CTATGTA
1 AGTTATGTA
*
14376429 TGTTATGTA
1 AGTTATGTA
*
14376438 AGTTGTGT-
1 AGTTATGTA
*
14376446 AG-AATGTA
1 AGTTATGTA
*
14376454 AGCTATGTA
1 AGTTATGTA
14376463 AGTTATGTA
1 AGTTATGTA
**
14376472 AGTGGTGT-
1 AGTTATGTA
14376480 A-TTATGTA
1 AGTTATGTA
14376488 AGTTATGTA
1 AGTTATGTA
14376497 AGTTATGTA
1 AGTTATGTA
14376506 AGTTATTATGTA
1 AG---TTATGTA
*
14376518 AGTTATGCA
1 AGTTATGTA
*
14376527 AGCTTATATATA
1 AG--T-TATGTA
14376539 AGTTATGT-
1 AGTTATGTA
*
14376547 A-TTATGTT
1 AGTTATGTA
14376555 A-TTATGT-
1 AGTTATGTA
14376562 A-TTATGTA
1 AGTTATGTA
*
14376570 ATTTAT-TA
1 AGTTATGTA
*
14376578 TGTTAT-T-
1 AGTTATGTA
*
14376585 A--TATATA
1 AGTTATGTA
*
14376592 AGATATGTA
1 AGTTATGTA
14376601 AGTTATGTA
1 AGTTATGTA
14376610 AGTTAT
1 AGTTAT
14376616 TATGTAAGTT
Statistics
Matches: 397, Mismatches: 81, Indels: 102
0.68 0.14 0.18
Matches are distributed among these distances:
5 3 0.01
6 4 0.01
7 67 0.17
8 47 0.12
9 236 0.59
10 10 0.03
11 15 0.04
12 15 0.04
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (9 bp):
AGTTATGTA
Found at i:14376644 original size:21 final size:20
Alignment explanation
Indices: 14376491--14376649 Score: 92
Period size: 21 Copynumber: 7.6 Consensus size: 20
14376481 TTATGTAAGT
*
14376491 TATGTAAGTTATGTAAGTTA
1 TATGTAAGTTATGCAAGTTA
14376511 TTATGTAAGTTATGCAAGCTTA
1 -TATGTAAGTTATGCAAG-TTA
* *
14376533 TATATAAGTTATGTATTATGTTA
1 TATGTAAGTTATGCA--A-GTTA
* *
14376556 TTATGT-A-TTATGTAATTTA
1 -TATGTAAGTTATGCAAGTTA
* * **
14376575 TTATGTTATTATATATAAG--A
1 -TATGTAAGT-TATGCAAGTTA
*
14376595 TATGTAAGTTATGTAAGTTA
1 TATGTAAGTTATGCAAGTTA
14376615 TTATGTAAGTTATGCAAGCTTA
1 -TATGTAAGTTATGCAAG-TTA
*
14376637 TATATAAGCTTAT
1 TATGTAAG-TTAT
14376650 ATATAATTAT
Statistics
Matches: 113, Mismatches: 12, Indels: 25
0.75 0.08 0.17
Matches are distributed among these distances:
18 7 0.06
19 16 0.14
20 4 0.04
21 53 0.47
22 23 0.20
23 5 0.04
24 5 0.04
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (20 bp):
TATGTAAGTTATGCAAGTTA
Found at i:14376645 original size:12 final size:12
Alignment explanation
Indices: 14376630--14376655 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14376620 TAAGTTATGC
14376630 AAGCTTATATAT
1 AAGCTTATATAT
14376642 AAGCTTATATAT
1 AAGCTTATATAT
14376654 AA
1 AA
14376656 TTATTTAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (12 bp):
AAGCTTATATAT
Found at i:14376751 original size:61 final size:61
Alignment explanation
Indices: 14376656--14376877 Score: 258
Period size: 61 Copynumber: 3.7 Consensus size: 61
14376646 TTATATATAA
* * *
14376656 TTATTTAGAAAACTTATAAAATTAATACTAATAAATTTTATTACTAATAAATTTAGAACAC
1 TTATTTAGAAAACTTATAAATTTAATACTAATAAATTTTAATACTAATAAATTTAGAAAAC
*
14376717 TTATTTAGAAAACTTATAAGTTTAATACTAATAAATTTTAATACTAATAAATTTAGAAAAC
1 TTATTTAGAAAACTTATAAATTTAATACTAATAAATTTTAATACTAATAAATTTAGAAAAC
* * * * *
14376778 TTATTTAGAAAACTTATAAATTTAGAAAACTTATATAGATATTAAAAC-AAT--ATTT--ATAA-
1 TTATTTAGAAAACTTATAAATTT--AATAC-TA-ATAAATTTTAATACTAATAAATTTAGAAAAC
* * *
14376837 TTATTTAGAAAACTTATAAATTTTATAGTAATAAGTTTTAA
1 TTATTTAGAAAACTTATAAATTTAATACTAATAAATTTTAA
14376878 ATATAGGTTA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
55 8 0.06
56 2 0.01
57 2 0.01
59 23 0.16
60 3 0.02
61 79 0.56
62 4 0.03
63 4 0.03
64 5 0.04
65 11 0.08
ACGTcount: A:0.49, C:0.06, G:0.05, T:0.41
Consensus pattern (61 bp):
TTATTTAGAAAACTTATAAATTTAATACTAATAAATTTTAATACTAATAAATTTAGAAAAC
Found at i:14376758 original size:16 final size:16
Alignment explanation
Indices: 14376737--14376770 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
14376727 AACTTATAAG
14376737 TTTAATACTAATAAAT
1 TTTAATACTAATAAAT
14376753 TTTAATACTAATAAAT
1 TTTAATACTAATAAAT
14376769 TT
1 TT
14376771 AGAAAACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTAATACTAATAAAT
Found at i:14376785 original size:13 final size:13
Alignment explanation
Indices: 14376767--14376794 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14376757 ATACTAATAA
14376767 ATTTAGAAAACTT
1 ATTTAGAAAACTT
14376780 ATTTAGAAAACTT
1 ATTTAGAAAACTT
14376793 AT
1 AT
14376795 AAATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAGAAAACTT
Found at i:14376797 original size:30 final size:30
Alignment explanation
Indices: 14376702--14376816 Score: 110
Period size: 30 Copynumber: 3.8 Consensus size: 30
14376692 TTTATTACTA
*
14376702 ATAAATTTAGAACACTTATTTAGAAAACTT
1 ATAAATTTAGAAAACTTATTTAGAAAACTT
* * * * *
14376732 ATAAGTTTA-ATACTAA-TAAATTT-TAATACTA
1 ATAAATTTAGA-A--AACT-TATTTAGAAAACTT
14376763 ATAAATTTAGAAAACTTATTTAGAAAACTT
1 ATAAATTTAGAAAACTTATTTAGAAAACTT
*
14376793 ATAAATTTAGAAAACTTATATAGA
1 ATAAATTTAGAAAACTTATTTAGA
14376817 TATTAAAACA
Statistics
Matches: 66, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
29 7 0.11
30 38 0.58
31 15 0.23
32 6 0.09
ACGTcount: A:0.50, C:0.07, G:0.06, T:0.37
Consensus pattern (30 bp):
ATAAATTTAGAAAACTTATTTAGAAAACTT
Done.