Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 53 of 214
Found at i:14768085 original size:54 final size:54
Alignment explanation
Indices: 14768002--14768363 Score: 227
Period size: 54 Copynumber: 6.7 Consensus size: 54
14767992 ACAGACAAAT
* ** * *
14768002 CAATCA-TTTACCCT-CGAGGGGTAAAACAGTCATTTTACCCT-TTGAGGGTACTA
1 CAATCATTTTACCCTAC-AGAGGTATTACAGTTATTTTACCCTATAG-GGGTACTA
* * * *
14768055 CAATTATTTTATCCTACA-AGGGTATTACAGTTATTTTACCCTATAGGGGTATTG
1 CAATCATTTTACCCTACAGA-GGTATTACAGTTATTTTACCCTATAGGGGTACTA
* * * *
14768109 CAGTCATTTTACCCTACAGAGGTATTACTGTTATTTTACCCTACAGGGGAACTA
1 CAATCATTTTACCCTACAGAGGTATTACAGTTATTTTACCCTATAGGGGTACTA
*** * * * * * * *
14768163 TGGTCATTTTACCCTACAG-GAGCATTAC-GATCACTTTACCCTACAAGGGCATTA
1 CAATCATTTTACCCTACAGAG-GTATTACAG-TTATTTTACCCTATAGGGGTACTA
* * * * * * *
14768217 CGATCATTTTACCCTACAGGGGCATTACGGTCACTTTACCCTATAGGGGTATTA
1 CAATCATTTTACCCTACAGAGGTATTACAGTTATTTTACCCTATAGGGGTACTA
*** * ** ** * *
14768271 TGGTCATTTTACCCTATA-AGGGTATTATGGTCGTTTTACCCTACAGGGGTATTA
1 CAATCATTTTACCCTACAGA-GGTATTACAGTTATTTTACCCTATAGGGGTACTA
** *
14768325 TGATCATTTTACCCTACAG-GGTATTACGGTTATTTTACC
1 CAATCATTTTACCCTACAGAGGTATTACAGTTATTTTACC
14768364 TTACAGGGTA
Statistics
Matches: 254, Mismatches: 44, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
53 24 0.09
54 224 0.88
55 6 0.02
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (54 bp):
CAATCATTTTACCCTACAGAGGTATTACAGTTATTTTACCCTATAGGGGTACTA
Found at i:14768239 original size:27 final size:27
Alignment explanation
Indices: 14768060--14768391 Score: 355
Period size: 27 Copynumber: 12.4 Consensus size: 27
14768050 TACTACAATT
* * * *
14768060 ATTTTATCCTACAAGGGTATTACAGTT
1 ATTTTACCCTACAGGGGTATTACGGTC
* * *
14768087 ATTTTACCCTATAGGGGTATTGCAGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
* * *
14768114 ATTTTACCCTACAGAGGTATTACTGTT
1 ATTTTACCCTACAGGGGTATTACGGTC
* * *
14768141 ATTTTACCCTACAGGGGAACTATGGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
* * *
14768168 ATTTTACCCTACAGGAGCATTACGATC
1 ATTTTACCCTACAGGGGTATTACGGTC
* * * *
14768195 ACTTTACCCTACAAGGGCATTACGATC
1 ATTTTACCCTACAGGGGTATTACGGTC
*
14768222 ATTTTACCCTACAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
* * *
14768249 ACTTTACCCTATAGGGGTATTATGGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
* * *
14768276 ATTTTACCCTATAAGGGTATTATGGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
* * *
14768303 GTTTTACCCTACAGGGGTATTATGATC
1 ATTTTACCCTACAGGGGTATTACGGTC
*
14768330 ATTTTACCCTACA-GGGTATTACGGTT
1 ATTTTACCCTACAGGGGTATTACGGTC
*
14768356 ATTTTACCTTACA-GGGTATTACGGTC
1 ATTTTACCCTACAGGGGTATTACGGTC
14768382 A-TTTACCCTA
1 ATTTTACCCTA
14768392 TGGGGGTCTT
Statistics
Matches: 261, Mismatches: 44, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
25 8 0.03
26 35 0.13
27 218 0.84
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
ATTTTACCCTACAGGGGTATTACGGTC
Found at i:14770757 original size:37 final size:37
Alignment explanation
Indices: 14770714--14770930 Score: 208
Period size: 37 Copynumber: 5.9 Consensus size: 37
14770704 ATGCCAATTT
*
14770714 CTCATAAGAGCTAATCCACTCGATAACACGCCAAACA
1 CTCATAAGAGCTAATCCACTCGATAACACGCCAAACG
* ** *
14770751 CCCATAA-ATGCTAATCCACTATATAACACACCAAACG
1 CTCATAAGA-GCTAATCCACTCGATAACACGCCAAACG
* *
14770788 CTCATAAGAGCCAATCCAAC-CGATAACATGCCAAACG
1 CTCATAAGAGCTAATCC-ACTCGATAACACGCCAAACG
* * * *
14770825 CTCATAAGAGCTAATTCAACT-GATAACATGCTAAACA
1 CTCATAAGAGCTAA-TCCACTCGATAACACGCCAAACG
* * *
14770862 CTCATAAGAGTTAATCCAATCGA-AACACGCCAATCG
1 CTCATAAGAGCTAATCCACTCGATAACACGCCAAACG
* * * * *
14770898 TTCATAAGATCTAATCCAATTGATAGCACGCCA
1 CTCATAAGAGCTAATCCACTCGATAACACGCCA
14770931 TGGCACTAAG
Statistics
Matches: 146, Mismatches: 27, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
36 33 0.23
37 108 0.74
38 5 0.03
ACGTcount: A:0.41, C:0.29, G:0.11, T:0.20
Consensus pattern (37 bp):
CTCATAAGAGCTAATCCACTCGATAACACGCCAAACG
Found at i:14773559 original size:6 final size:6
Alignment explanation
Indices: 14773548--14773582 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
14773538 GCAAATAGAT
14773548 CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
14773583 TTGGGAGCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.31, G:0.00, T:0.51
Consensus pattern (6 bp):
CATTTC
Found at i:14774189 original size:16 final size:16
Alignment explanation
Indices: 14774168--14774198 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14774158 ACAACTTGGG
14774168 TCAAGGAAAAGCTAGC
1 TCAAGGAAAAGCTAGC
14774184 TCAAGGAAAAGCTAG
1 TCAAGGAAAAGCTAG
14774199 ATTGCTCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.16, G:0.26, T:0.13
Consensus pattern (16 bp):
TCAAGGAAAAGCTAGC
Found at i:14780717 original size:2 final size:2
Alignment explanation
Indices: 14780710--14780753 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
14780700 CTTGGTCGCT
14780710 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
14780752 TC
1 TC
14780754 CTCGCAAATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:14781483 original size:14 final size:14
Alignment explanation
Indices: 14781464--14781490 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14781454 AGCCATTAAA
14781464 AGGCATGAAAAGGG
1 AGGCATGAAAAGGG
14781478 AGGCATGAAAAGG
1 AGGCATGAAAAGG
14781491 AAGCCATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.41, T:0.07
Consensus pattern (14 bp):
AGGCATGAAAAGGG
Found at i:14787279 original size:49 final size:50
Alignment explanation
Indices: 14787211--14787547 Score: 340
Period size: 51 Copynumber: 6.7 Consensus size: 50
14787201 TCATTCGATA
* *
14787211 CACGTAGTAGCCTTCACATAGTACTACACACGTCATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
* * *
14787261 CAC-TAGTAGCCTTTACATAGTACTACACACATGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
* * *
14787310 CACGTAGTAGCCTTCACATAGTATTACACACGTGACCAAAGCTTTT-TGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTACGGTT
* * * *** *
14787361 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTT
* * * *
14787412 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAATCTTATCGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTT
** * * * * *
14787463 CATATTGTAGCCTTCACTTAGTACTACACATGTGACC-A-TTATTGATCGATA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTT-TT-A-CGGTT
*
14787514 CACGTAGTAGCCTTCACACAGTACTACACACGTG
1 CACGTAGTAGCCTTCACATAGTACTACACACGTG
14787548 TTCATCGATA
Statistics
Matches: 237, Mismatches: 43, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
49 50 0.21
50 36 0.15
51 147 0.62
52 4 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
Found at i:14787440 original size:102 final size:102
Alignment explanation
Indices: 14787205--14787547 Score: 433
Period size: 102 Copynumber: 3.4 Consensus size: 102
14787195 CTTTTATCAT
* * * *
14787205 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTCATC-AAG-TTTTACGGTTCAC-TAG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAG
* * ** * ***
14787267 TAGCCTTTACATAGTACTACACACATGATCAAGTTTTA
65 TAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * * *
14787305 -CGGTTCACGTAGTAGCCTTCACATAGTATTACACACGTGACCAAAGCTTTTTGGTACACATAGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
14787369 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * * *
14787406 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAATCTTATCGGTACATATTGT
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
* *
14787471 AGCCTTCACTTAGTACTACACATGTGACCATTATTGA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
14787508 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
14787548 TTCATCGATA
Statistics
Matches: 213, Mismatches: 26, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
99 37 0.17
100 9 0.04
101 37 0.17
102 130 0.61
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (102 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:14787516 original size:153 final size:149
Alignment explanation
Indices: 14787205--14787546 Score: 380
Period size: 153 Copynumber: 2.3 Consensus size: 149
14787195 CTTTTATCAT
* ** *
14787205 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTCATCAAGTTTTACGGTTCACTAGTAG
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTCACCAACATTTACGATTCACTAGTAG
* * * * * * * *
14787270 CCTTTACATAGTACTACACACATGATCAAGTTTTACGGTTCACGTAGTAGCCTTCACATAGTATT
66 CCTTCACACAGTACTACACACATGACCAAATCTTACGGTACACATAGTAGCCTTCACATAGTACT
*
14787335 ACACACGTGACCAAAGCTTT
131 ACACACGTGACCAAA-CTTA
* * * * * * *
14787355 TTGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGT
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTCACCAACATTTA-CGATTCAC-TAGT
* * * *
14787420 AGCCTTCACACAGTACTACACACGTGACCAAATCTTATCGGTACATATTGTAGCCTTCACTTAGT
64 AGCCTTCACACAGTACTACACACATGACCAAATCTTA-CGGTACACATAGTAGCCTTCACATAGT
* *
14787485 ACTACACATGTGACCATTA-TTGA
128 ACTACACACGTGACCA-AACTT-A
*
14787508 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGT
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGT
14787547 GTTCATCGAT
Statistics
Matches: 155, Mismatches: 32, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
150 41 0.26
151 7 0.05
152 37 0.24
153 69 0.45
154 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (149 bp):
TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTCACCAACATTTACGATTCACTAGTAG
CCTTCACACAGTACTACACACATGACCAAATCTTACGGTACACATAGTAGCCTTCACATAGTACT
ACACACGTGACCAAACTTA
Found at i:14794474 original size:51 final size:50
Alignment explanation
Indices: 14794311--14794595 Score: 272
Period size: 51 Copynumber: 5.7 Consensus size: 50
14794301 TCATTCGATA
* * *
14794311 CACGTAGTAGCCTTCACATAGTACTACACACGTCATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAATTTTACGGTT
* * * * **
14794361 CACGTAGTAGCCTTTACATAGTACTACACACATGATCAAGTTTTACATTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAATTTTACGGTT
* * ** *
14794411 CACATAGTAGCCTTCACATCGTACTACACACGTGACCAAATCTTTTTGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAT-TTTACGGTT
* * * * *
14794462 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCA-TTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AATTTTA-CGGTT
* * * * *
14794513 CACGTAGTAGCCTTCACACAGTACTACACATGTGACCATTAATTAT-CGATA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCA--AATTTTACGGTT
*
14794564 GACGTAGTAGCCTTCAC--AGTACTACACACGTG
1 CACGTAGTAGCCTTCACATAGTACTACACACGTG
14794596 TTCATTGATA
Statistics
Matches: 198, Mismatches: 32, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
49 14 0.07
50 83 0.42
51 96 0.48
52 3 0.02
53 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAATTTTACGGTT
Found at i:14813944 original size:29 final size:29
Alignment explanation
Indices: 14813918--14814039 Score: 208
Period size: 29 Copynumber: 4.2 Consensus size: 29
14813908 CCCCGTTTGA
14813918 ACCATCGAATATGAAAAGGGATGGTTTCG
1 ACCATCGAATATGAAAAGGGATGGTTTCG
*
14813947 ACCATCGAATATGAAAAAGGATGGTTTCG
1 ACCATCGAATATGAAAAGGGATGGTTTCG
* *
14813976 ACCATCAAATATGAAAAGGGATGGTTTTG
1 ACCATCGAATATGAAAAGGGATGGTTTCG
*
14814005 ACCATCGAATAAGAAAAGGGATGGTTTCG
1 ACCATCGAATATGAAAAGGGATGGTTTCG
14814034 ACCATC
1 ACCATC
14814040 ACTTAGCACA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 86 1.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.24
Consensus pattern (29 bp):
ACCATCGAATATGAAAAGGGATGGTTTCG
Found at i:14815798 original size:8 final size:8
Alignment explanation
Indices: 14815785--14815811 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
14815775 GATTTTTAAA
14815785 TATTATTT
1 TATTATTT
14815793 TATTATTT
1 TATTATTT
14815801 TATTATTT
1 TATTATTT
14815809 TAT
1 TAT
14815812 GTTTAGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TATTATTT
Found at i:14824778 original size:57 final size:60
Alignment explanation
Indices: 14824663--14824779 Score: 141
Period size: 57 Copynumber: 2.0 Consensus size: 60
14824653 TTTAGTATTC
* *
14824663 TTAATATGATGTATTTATATGTTTAAATTTCATTTTACTTACAATTTGATATAATTTTTTG
1 TTAATATGATGTATTTATATGTTTAAATTT-ATTTTACTCACAATTTAATATAATTTTTTG
* * * * *
14824724 TTAATCTGATGTA-TT-TGTGTTTAACTTT-TTTTACTCACGATTTAATCTAATTTTTT
1 TTAATATGATGTATTTATATGTTTAAATTTATTTTACTCACAATTTAATATAATTTTTT
14824780 ATTTTAATAT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
57 24 0.49
59 11 0.22
60 2 0.04
61 12 0.24
ACGTcount: A:0.27, C:0.08, G:0.09, T:0.56
Consensus pattern (60 bp):
TTAATATGATGTATTTATATGTTTAAATTTATTTTACTCACAATTTAATATAATTTTTTG
Found at i:14829600 original size:21 final size:20
Alignment explanation
Indices: 14829569--14829617 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
14829559 TCAAAAACAT
14829569 TAAAAATTATTAAATAATTA
1 TAAAAATTATTAAATAATTA
*
14829589 TAAAAATATATTAAATGATTA
1 TAAAAAT-TATTAAATAATTA
14829610 TAGAAAAT
1 TA-AAAAT
14829618 CATAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 7 0.27
21 14 0.54
22 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (20 bp):
TAAAAATTATTAAATAATTA
Found at i:14829602 original size:31 final size:31
Alignment explanation
Indices: 14829567--14829630 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
14829557 ATTCAAAAAC
*
14829567 ATTAAA-AATTATTA-AATAATTATAAAAATAT
1 ATTAAATAATTA-TAGAA-AATCATAAAAATAT
*
14829598 ATTAAATGATTATAGAAAATCATAAAAATAT
1 ATTAAATAATTATAGAAAATCATAAAAATAT
14829629 AT
1 AT
14829631 GTCTTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 23 0.79
32 6 0.21
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (31 bp):
ATTAAATAATTATAGAAAATCATAAAAATAT
Found at i:14829816 original size:19 final size:18
Alignment explanation
Indices: 14829726--14829825 Score: 73
Period size: 19 Copynumber: 5.5 Consensus size: 18
14829716 TTATATAAGT
14829726 TATAGAAAAATTTTAAAAA
1 TATAGAAAAA-TTTAAAAA
* * *
14829745 CATTA-ATAAATTT-TAAA
1 TA-TAGAAAAATTTAAAAA
* *
14829762 TATATATAAATTATGAAAAA
1 TATAGAAAAATT-T-AAAAA
14829782 T-TA-AAAAATTTAAAAA
1 TATAGAAAAATTTAAAAA
*
14829798 TATAGAAAAATGTTTAAAA
1 TATAGAAAAAT-TTAAAAA
14829817 TATAGAAAA
1 TATAGAAAA
14829826 TTATTAAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
16 8 0.12
17 14 0.21
18 16 0.24
19 22 0.33
20 6 0.09
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (18 bp):
TATAGAAAAATTTAAAAA
Found at i:14829826 original size:18 final size:19
Alignment explanation
Indices: 14829726--14829836 Score: 69
Period size: 18 Copynumber: 6.1 Consensus size: 19
14829716 TTATATAAGT
14829726 TATAGAAAAATT-TTAAAAA
1 TATAGAAAAATTATT-AAAA
* *
14829745 CATTA-ATAAATT-TT-AAA
1 TA-TAGAAAAATTATTAAAA
* * *
14829762 TATATATAAATTATGAAAA
1 TATAGAAAAATTATTAAAA
*
14829781 -ATTA-AAAAATT-TAAAAA
1 TA-TAGAAAAATTATTAAAA
14829798 TATAGAAAAATGT-TTAAAA
1 TATAGAAAAAT-TATTAAAA
14829817 TATAG-AAAATTATTAAAA
1 TATAGAAAAATTATTAAAA
14829835 TA
1 TA
14829837 GAAAATTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 19
0.75 0.07 0.19
Matches are distributed among these distances:
16 2 0.03
17 19 0.25
18 28 0.37
19 25 0.33
20 2 0.03
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (19 bp):
TATAGAAAAATTATTAAAA
Found at i:14829931 original size:18 final size:17
Alignment explanation
Indices: 14829908--14829948 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
14829898 TTCAAAAATT
14829908 AATATAAAAAATTAAAAA
1 AATATAAAAAA-TAAAAA
*
14829926 AATATAAAATATAAAAA
1 AATATAAAAAATAAAAA
14829943 AGATAT
1 A-ATAT
14829949 TTACATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (17 bp):
AATATAAAAAATAAAAA
Found at i:14830345 original size:33 final size:35
Alignment explanation
Indices: 14830249--14830345 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
14830239 TTAATATTTT
*
14830249 AATATATGAAATATAAATTTTAAATATTT--TTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATTAAGC
* *
14830284 AATAAATATTAATTAT-TTATAAAT-TTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
14830317 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
14830346 ATATAACCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 7 0.14
33 11 0.22
34 9 0.18
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:14831027 original size:16 final size:16
Alignment explanation
Indices: 14830986--14831028 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
14830976 TATTTTCATG
*
14830986 ATTTATATTTTTTATA
1 ATTTATATTTTTAATA
*
14831002 ATATATATTTTTAATA
1 ATTTATATTTTTAATA
14831018 TATTTA-ATTTT
1 -ATTTATATTTT
14831029 ATATTTTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATATTTTTAATA
Found at i:14831177 original size:11 final size:11
Alignment explanation
Indices: 14831161--14831186 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14831151 AGTTTCTATG
14831161 ATTTTTTTATA
1 ATTTTTTTATA
14831172 ATTTTTTTATA
1 ATTTTTTTATA
14831183 ATTT
1 ATTT
14831187 GTAATGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
ATTTTTTTATA
Found at i:14831897 original size:3 final size:3
Alignment explanation
Indices: 14831889--14831927 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
14831879 TTATGAAATT
14831889 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14831928 TACTAGGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14833514 original size:15 final size:15
Alignment explanation
Indices: 14833496--14833529 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14833486 TTAATTAAAA
* *
14833496 TAAACTATGTTTAAT
1 TAAACTAAGATTAAT
14833511 TAAACTAAGATTAAT
1 TAAACTAAGATTAAT
14833526 TAAA
1 TAAA
14833530 ACTTAATCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (15 bp):
TAAACTAAGATTAAT
Found at i:14836703 original size:23 final size:23
Alignment explanation
Indices: 14836672--14836722 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
14836662 ACCTATTTTC
*
14836672 TTACTGTAGTAATTTTCAGGG-TA
1 TTACAGTAGTAATTTTC-GGGATA
14836695 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
14836718 TTACA
1 TTACA
14836723 CATATTATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:14838400 original size:5 final size:5
Alignment explanation
Indices: 14838386--14838432 Score: 62
Period size: 5 Copynumber: 9.8 Consensus size: 5
14838376 GGGTGAGTAT
* *
14838386 TTGA- TTGAG TTGAG TTGAG TTGAG TTGAA TTGAG TT-AG TCGAG TTGA
1 TTGAG TTGAG TTGAG TTGAG TTGAG TTGAG TTGAG TTGAG TTGAG TTGA
14838433 TGAATTATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
4 7 0.19
5 30 0.81
ACGTcount: A:0.23, C:0.02, G:0.34, T:0.40
Consensus pattern (5 bp):
TTGAG
Found at i:14843760 original size:9 final size:9
Alignment explanation
Indices: 14843746--14843897 Score: 70
Period size: 9 Copynumber: 16.6 Consensus size: 9
14843736 AAATAATTTT
14843746 TTTTTATAA
1 TTTTTATAA
14843755 -TTTT-TAA
1 TTTTTATAA
*
14843762 TTTTTCTAA
1 TTTTTATAA
14843771 TTTTTAATAA
1 TTTTT-ATAA
14843781 -TTTTATAA
1 TTTTTATAA
*
14843789 TTTATTA-GA
1 TTT-TTATAA
14843798 TTTTTAT--
1 TTTTTATAA
*
14843805 TATTTATAA
1 TTTTTATAA
14843814 GTTTTTATAA
1 -TTTTTATAA
**
14843824 GATTTA-AA
1 TTTTTATAA
14843832 TATTTTA-AA
1 T-TTTTATAA
14843841 TATGCTTTATTAA
1 T-T--TTTA-TAA
14843854 TTTTTTTTATAA
1 ---TTTTTATAA
*
14843866 TTTATTAGAA
1 TTT-TTATAA
14843876 -TTTTATAA
1 TTTTTATAA
*
14843884 ATTTTATAA
1 TTTTTATAA
14843893 TTTTT
1 TTTTT
14843898 TGAGTAAACT
Statistics
Matches: 113, Mismatches: 11, Indels: 38
0.70 0.07 0.23
Matches are distributed among these distances:
7 9 0.08
8 22 0.19
9 48 0.42
10 19 0.17
11 4 0.04
12 3 0.03
13 6 0.05
15 1 0.01
16 1 0.01
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:14843801 original size:26 final size:26
Alignment explanation
Indices: 14843745--14843803 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
14843735 TAAATAATTT
* *
14843745 TTTTTTATAATTTTTAATTTTTCTAA
1 TTTTTAATAATTTTTAATTTATCTAA
14843771 TTTTTAATAATTTTATAATTTAT-TAGA
1 TTTTTAATAATTTT-TAATTTATCTA-A
14843798 TTTTTA
1 TTTTTA
14843804 TTATTTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 15 0.52
27 14 0.48
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTTTAATAATTTTTAATTTATCTAA
Found at i:14843802 original size:18 final size:16
Alignment explanation
Indices: 14843746--14843823 Score: 84
Period size: 18 Copynumber: 4.6 Consensus size: 16
14843736 AAATAATTTT
14843746 TTTTTATAATTTTTAA
1 TTTTTATAATTTTTAA
*
14843762 TTTTTCTAATTTTTAA
1 TTTTTATAATTTTTAA
14843778 TAATTTTATAATTTATTAGA
1 T--TTTTATAATTT-TTA-A
* *
14843798 TTTTTATTATTTATAA
1 TTTTTATAATTTTTAA
14843814 GTTTTTATAA
1 -TTTTTATAA
14843824 GATTTAAATA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
16 17 0.33
17 10 0.19
18 20 0.38
19 3 0.06
20 2 0.04
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (16 bp):
TTTTTATAATTTTTAA
Found at i:14844010 original size:31 final size:29
Alignment explanation
Indices: 14843942--14844013 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
14843932 CTTAGGTTAT
*
14843942 ATTTTAGTCACTTATGTTTGAAATGTTAC
1 ATTTTAGTCACTTATGTTTGAAATGTAAC
* ***
14843971 GTTTTAGTCACTTATGTTATCGCGTTGTAAC
1 ATTTTAGTCACTTATGTT-T-GAAATGTAAC
14844002 ATTTTAGTCACT
1 ATTTTAGTCACT
14844014 GAGCCGTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 17 0.49
30 1 0.03
31 17 0.49
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.47
Consensus pattern (29 bp):
ATTTTAGTCACTTATGTTTGAAATGTAAC
Found at i:14857273 original size:22 final size:22
Alignment explanation
Indices: 14857232--14857273 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14857222 AGATAGGGAA
* * *
14857232 TTAAAAGGTGATAGATTAAAAT
1 TTAAAAGCTGAAAGAGTAAAAT
14857254 TTAAAAGCTGAAAGAGTAAA
1 TTAAAAGCTGAAAGAGTAAA
14857274 GGGGTTGAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.02, G:0.19, T:0.26
Consensus pattern (22 bp):
TTAAAAGCTGAAAGAGTAAAAT
Found at i:14858120 original size:20 final size:21
Alignment explanation
Indices: 14858092--14858144 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 21
14858082 AAAGTATAAA
*
14858092 TTTGGAATTTTTATAAA-TAT
1 TTTGAAATTTTTATAAATTAT
14858112 TTTGAAA-TTTTA-AAATTAT
1 TTTGAAATTTTTATAAATTAT
*
14858131 TTTGTAATTTTTAT
1 TTTGAAATTTTTAT
14858145 TGAGAGAGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 3 0.11
19 14 0.50
20 11 0.39
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (21 bp):
TTTGAAATTTTTATAAATTAT
Found at i:14862291 original size:22 final size:22
Alignment explanation
Indices: 14862250--14862291 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14862240 AGATAGGGAA
* * *
14862250 TTAAAAGGTGATAGATTAAAAT
1 TTAAAAGCTGAAAGAGTAAAAT
14862272 TTAAAAGCTGAAAGAGTAAA
1 TTAAAAGCTGAAAGAGTAAA
14862292 GGGGTTGGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.02, G:0.19, T:0.26
Consensus pattern (22 bp):
TTAAAAGCTGAAAGAGTAAAAT
Found at i:14879067 original size:18 final size:18
Alignment explanation
Indices: 14879029--14879064 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14879019 TTATTATTTT
*
14879029 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
14879047 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
14879065 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:14879076 original size:31 final size:29
Alignment explanation
Indices: 14879039--14879104 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
14879029 TAAAATTTAC
*
14879039 TATTAAAATAA-AATTTAAATATTAAATAATT
1 TATTAAAATAATAAATT--ATATT-AATAATT
14879070 TATTAAAAATAATAAATTATATTAATAATT
1 TATT-AAAATAATAAATTATATTAATAATT
14879100 TATTA
1 TATTA
14879105 TATGACTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 1 0.03
30 11 0.34
31 9 0.28
32 7 0.22
33 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (29 bp):
TATTAAAATAATAAATTATATTAATAATT
Found at i:14879200 original size:10 final size:9
Alignment explanation
Indices: 14879171--14879196 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14879161 AGTTTCTATT
14879171 AATATTTTA
1 AATATTTTA
14879180 AATATTTTA
1 AATATTTTA
14879189 AATATTTT
1 AATATTTT
14879197 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
AATATTTTA
Found at i:14886023 original size:68 final size:68
Alignment explanation
Indices: 14885903--14886090 Score: 241
Period size: 68 Copynumber: 2.8 Consensus size: 68
14885893 GTCATAGGTG
* * * * *
14885903 CATGGCACCATAATGTGTAAGACCATAGTTGGGCTATGGTAACATATAAAGTCTACTAAGACAGT
1 CATGGGACCATAATGTGTAAGACCATAGTTGGGCTATGGCAACATATGAAGTCCACCAAGACAGT
14885968 AAA
66 AAA
* * * * *
14885971 GATGGGACCATAGTGTGTAAGATCATAGTTGGGCTATGGCAACATATGAAGTCCACCAGGATAGT
1 CATGGGACCATAATGTGTAAGACCATAGTTGGGCTATGGCAACATATGAAGTCCACCAAGACAGT
14886036 AAA
66 AAA
* * ** *
14886039 CATGAGATCATAATGTGTAAGACCATAGCAGGGCTATGGCCACATATGAAGT
1 CATGGGACCATAATGTGTAAGACCATAGTTGGGCTATGGCAACATATGAAGT
14886091 TCGTAAGTAC
Statistics
Matches: 102, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 102 1.00
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (68 bp):
CATGGGACCATAATGTGTAAGACCATAGTTGGGCTATGGCAACATATGAAGTCCACCAAGACAGT
AAA
Found at i:14888912 original size:27 final size:27
Alignment explanation
Indices: 14888874--14889080 Score: 229
Period size: 27 Copynumber: 7.7 Consensus size: 27
14888864 AGGTTGATAT
* *
14888874 ATGACCGAAATACCCCTATAGGGTAGA
1 ATGACTGAAATACCCCTATAGGGTAAA
* **
14888901 ATGACTGAAATACCCCCATAAAGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
*
14888928 ATGACCGAAATACCCCTATAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* * *
14888955 ATAACTGAAATACCCCCATATGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* *
14888982 ATAACTGAAATA-CCCTCATAGGATAAA
1 ATGACTGAAATACCCCT-ATAGGGTAAA
* * *
14889009 ATGACTAAAATACCCCCATAGGGTAGA
1 ATGACTGAAATACCCCTATAGGGTAAA
14889036 ATGA-TCGAAATACCCCTATAGGGTAAA
1 ATGACT-GAAATACCCCTATAGGGTAAA
* **
14889063 ATGGCTGTTATACCCCTA
1 ATGACTGAAATACCCCTA
14889081 GGAGATGAAA
Statistics
Matches: 149, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.03
27 141 0.95
28 4 0.03
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (27 bp):
ATGACTGAAATACCCCTATAGGGTAAA
Found at i:14889078 original size:54 final size:54
Alignment explanation
Indices: 14888874--14889065 Score: 269
Period size: 54 Copynumber: 3.6 Consensus size: 54
14888864 AGGTTGATAT
* *
14888874 ATGACCGAAATACCCCTATAGGGTAGAATGACTGAAATACCCCCATAAAGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCCCATAAGGTAAA
* *
14888928 ATGACCGAAATACCCCTATAGGGTAAAATAACTGAAATACCCCCATATGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCCCATAAGGTAAA
* * * * * *
14888982 ATAACTGAAATA-CCCTCATAGGATAAAATGACTAAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCT-ATAGGGTAAAATGACTGAAATACCCCCATAAGGTAAA
*
14889036 ATGATCGAAATACCCCTATAGGGTAAAATG
1 ATGACCGAAATACCCCTATAGGGTAAAATG
14889066 GCTGTTATAC
Statistics
Matches: 121, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 4 0.03
54 113 0.93
55 4 0.03
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (54 bp):
ATGACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCCCATAAGGTAAA
Found at i:14896129 original size:7 final size:7
Alignment explanation
Indices: 14896117--14896163 Score: 57
Period size: 7 Copynumber: 7.3 Consensus size: 7
14896107 AAACAAAAGT
14896117 AAAGACA
1 AAAGACA
14896124 AAAGACA
1 AAAGACA
*
14896131 AAAGAAA
1 AAAGACA
14896138 AAAGAC-
1 AAAGACA
14896144 AAA-ACA
1 AAAGACA
14896150 AAA-ACA
1 AAAGACA
14896156 AAA-ACA
1 AAAGACA
14896162 AA
1 AA
14896164 TAAAATATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
5 2 0.05
6 17 0.46
7 18 0.49
ACGTcount: A:0.79, C:0.13, G:0.09, T:0.00
Consensus pattern (7 bp):
AAAGACA
Found at i:14896153 original size:6 final size:6
Alignment explanation
Indices: 14896090--14896163 Score: 55
Period size: 6 Copynumber: 12.3 Consensus size: 6
14896080 AAAATAAAAT
* ** *
14896090 AAAAC- AAAA-A AAAACA GAAACA AAAGTA AAGACA AAAGACA AAAGA-A
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA AAA-ACA AAA-ACA
*
14896137 AAAAGA CAAAACA AAAACA AAAACA AA
1 AAAACA -AAAACA AAAACA AAAACA AA
14896164 TAAAATATAA
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
5 9 0.16
6 33 0.60
7 13 0.24
ACGTcount: A:0.78, C:0.12, G:0.08, T:0.01
Consensus pattern (6 bp):
AAAACA
Found at i:14896742 original size:19 final size:20
Alignment explanation
Indices: 14896705--14896744 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14896695 TTTTTTTTTC
* *
14896705 AAAATAACATGAAAGTAAAA
1 AAAATAACATAAAAATAAAA
14896725 AAAATAA-ATAAAAATAAAA
1 AAAATAACATAAAAATAAAA
14896744 A
1 A
14896745 CACTTGGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAATAACATAAAAATAAAA
Found at i:14900159 original size:21 final size:21
Alignment explanation
Indices: 14900135--14900174 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
14900125 ATTTTGTAAT
14900135 TTAATAGAAA-ATTAAAACAAA
1 TTAA-AGAAAGATTAAAACAAA
14900156 TTAAAGAAAGATTAAAACA
1 TTAAAGAAAGATTAAAACA
14900175 TTTTTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (21 bp):
TTAAAGAAAGATTAAAACAAA
Found at i:14901211 original size:37 final size:37
Alignment explanation
Indices: 14901092--14901199 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
14901082 CTACATGTTT
* * * *
14901092 TGGCGTGTTTTCAGTTGGACTAGCTCTAATGAGCATC
1 TGGCGTGTTATCAGGTGGATTAGCTCTTATGAGCATC
14901129 TGGCGTGTTATC-GAGTGGATTAGCTCTTATGAGCATC
1 TGGCGTGTTATCAG-GTGGATTAGCTCTTATGAGCATC
*
14901166 TGGCGTGTTATCAGGTGGATTAGCTCTTACGAGC
1 TGGCGTGTTATCAGGTGGATTAGCTCTTATGAGC
14901200 GATTGACGTG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.02
37 62 0.97
38 1 0.02
ACGTcount: A:0.19, C:0.18, G:0.30, T:0.34
Consensus pattern (37 bp):
TGGCGTGTTATCAGGTGGATTAGCTCTTATGAGCATC
Found at i:14913635 original size:17 final size:17
Alignment explanation
Indices: 14913610--14913648 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
14913600 CATCAATCTC
* *
14913610 TCTTATTTTCCTTTGTT
1 TCTTTTTTTCCTTTCTT
*
14913627 TCTTTTTTTTCTTTCTT
1 TCTTTTTTTCCTTTCTT
14913644 TCTTT
1 TCTTT
14913649 CTTCATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.77
Consensus pattern (17 bp):
TCTTTTTTTCCTTTCTT
Found at i:14922750 original size:38 final size:38
Alignment explanation
Indices: 14922661--14922755 Score: 109
Period size: 38 Copynumber: 2.5 Consensus size: 38
14922651 GTGGAATGTA
* *
14922661 ATCAGATGGAATAGCTCTTTTGAGCATACTGGCATGTT
1 ATCAGATGGAATAGCTCTTATGAGCATACTGGCATGCT
* * * * **
14922699 ATCGGATGTAATAGCTCTTATGAGGATATTGGTGTGCT
1 ATCAGATGGAATAGCTCTTATGAGCATACTGGCATGCT
*
14922737 ATCAGATGGAATAGGTCTT
1 ATCAGATGGAATAGCTCTT
14922756 CTAAGCAAAC
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (38 bp):
ATCAGATGGAATAGCTCTTATGAGCATACTGGCATGCT
Found at i:14929299 original size:11 final size:12
Alignment explanation
Indices: 14929268--14929314 Score: 53
Period size: 11 Copynumber: 3.9 Consensus size: 12
14929258 ATAACATAAT
14929268 TAAATAATAAGAA
1 TAAATAATAA-AA
*
14929281 TCAA-AATAAAA
1 TAAATAATAAAA
14929292 TAAA-AATAAAA
1 TAAATAATAAAA
14929303 TAGAATAATAAA
1 TA-AATAATAAA
14929315 GTTCAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 14 0.47
12 7 0.23
13 9 0.30
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.21
Consensus pattern (12 bp):
TAAATAATAAAA
Found at i:14932984 original size:27 final size:27
Alignment explanation
Indices: 14932953--14933130 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14932943 TAAATTGTAC
14932953 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14932980 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14933006 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14933034 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14933062 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14933089 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14933116 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14933131 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14933067 original size:82 final size:81
Alignment explanation
Indices: 14932954--14933109 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14932944 AAATTGTACA
* *
14932954 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14933018 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14933035 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14933100 TGCGAGTTGA
65 TGCGAATTGA
14933110 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14933121 original size:82 final size:81
Alignment explanation
Indices: 14932950--14933130 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14932940 GATTAAATTG
* *
14932950 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14933015 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14933031 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14933095 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14933113 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14933131 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14934765 original size:21 final size:21
Alignment explanation
Indices: 14934733--14934773 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14934723 ATTTATATAA
14934733 TCCTTATGTGATATG-TTTTTC
1 TCCTTATGTGAT-TGATTTTTC
14934754 TCCTT-TGTTGATTGATTTTT
1 TCCTTATG-TGATTGATTTTT
14934774 TCGTAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.12, C:0.12, G:0.15, T:0.61
Consensus pattern (21 bp):
TCCTTATGTGATTGATTTTTC
Found at i:14942003 original size:25 final size:25
Alignment explanation
Indices: 14941975--14942031 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
14941965 CTACACCACA
*
14941975 GCTCTTATGAGCATCCCG-TTATACG
1 GCTCTTATGAGCATCCCGATTA-AAG
* *
14942000 GCTCGTTGTGAGCTTCCCGATTAAAG
1 GCTC-TTATGAGCATCCCGATTAAAG
14942026 GCTCTT
1 GCTCTT
14942032 TGTGAGCTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 6 0.22
26 18 0.67
27 3 0.11
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (25 bp):
GCTCTTATGAGCATCCCGATTAAAG
Found at i:14942039 original size:26 final size:27
Alignment explanation
Indices: 14941982--14942046 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 27
14941972 ACAGCTCTTA
* *
14941982 TGAGCATCCCG-TTATACGGCTCGTTG
1 TGAGCTTCCCGATTATAAGGCTCGTTG
*
14942008 TGAGCTTCCCGATTA-AAGGCTCTTTG
1 TGAGCTTCCCGATTATAAGGCTCGTTG
*
14942034 TGAGCTTTCCGAT
1 TGAGCTTCCCGAT
14942047 ATGGCTCGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 31 0.91
27 3 0.09
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.34
Consensus pattern (27 bp):
TGAGCTTCCCGATTATAAGGCTCGTTG
Found at i:14942088 original size:24 final size:24
Alignment explanation
Indices: 14942061--14942110 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
14942051 CTCGCTTGAA
*
14942061 CTTCCCGTTAATGGCTATTCGGAG
1 CTTCCCGTTAATGGCTATTCAGAG
* *
14942085 CTTCCTGTTAATGGCTCTTCAGAG
1 CTTCCCGTTAATGGCTATTCAGAG
14942109 CT
1 CT
14942111 ACCCATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.16, C:0.26, G:0.22, T:0.36
Consensus pattern (24 bp):
CTTCCCGTTAATGGCTATTCAGAG
Found at i:14953438 original size:22 final size:22
Alignment explanation
Indices: 14953410--14953453 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
14953400 ATGGAAGCAC
14953410 CTCTAAGCTTTTGATCATCATA
1 CTCTAAGCTTTTGATCATCATA
14953432 CTCTAAGCTTTTGATCATCATA
1 CTCTAAGCTTTTGATCATCATA
14953454 GTTACTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (22 bp):
CTCTAAGCTTTTGATCATCATA
Found at i:14961730 original size:20 final size:20
Alignment explanation
Indices: 14961648--14961733 Score: 86
Period size: 20 Copynumber: 4.3 Consensus size: 20
14961638 TTGTGCAGGA
14961648 TTGCACTTCGGTGCCTCTATT
1 TTGCACTTCGGTGCCTCT-TT
* *
14961669 CT-CAC-TCTGGTGCCTCTGT
1 TTGCACTTC-GGTGCCTCTTT
* * *
14961688 TTACACTTCGGTGTCTCTAT
1 TTGCACTTCGGTGCCTCTTT
*
14961708 TTGCACTACGGTGCCTCTTT
1 TTGCACTTCGGTGCCTCTTT
14961728 TTGCAC
1 TTGCAC
14961734 AATCGTGCCT
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
19 4 0.08
20 46 0.87
21 3 0.06
ACGTcount: A:0.10, C:0.30, G:0.19, T:0.41
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTTT
Found at i:14965559 original size:25 final size:25
Alignment explanation
Indices: 14965525--14965732 Score: 143
Period size: 25 Copynumber: 8.3 Consensus size: 25
14965515 AGGCTTCCAA
* *
14965525 AGAGAGTTCGCCACAAAGTCATTTC
1 AGAGAATTCGCCACAAAGGCATTTC
14965550 AGAGAATTCGCCACAAAGGCA-TTC
1 AGAGAATTCGCCACAAAGGCATTTC
* * * *
14965574 TAAAGTATTCGCGACAAAGGCTTTTC
1 -AGAGAATTCGCCACAAAGGCATTTC
* ** * *
14965600 ATAGAATTCGCCACAAACACGTTCC
1 AGAGAATTCGCCACAAAGGCATTTC
* * * * *
14965625 AAAGAATTTGCCACAAATGCGTTTT
1 AGAGAATTCGCCACAAAGGCATTTC
*
14965650 AGAGAATTTGCCACAAAGGCA-TTC
1 AGAGAATTCGCCACAAAGGCATTTC
* * *
14965674 TAGAGAATTCACCACAAAAGG-GTTCC
1 -AGAGAATTCGCCAC-AAAGGCATTTC
* * ** *
14965700 AGAGTATTTGCCACAAAGGTTTTTT
1 AGAGAATTCGCCACAAAGGCATTTC
14965725 AGAGAATT
1 AGAGAATT
14965733 TTGTGTTTAC
Statistics
Matches: 143, Mismatches: 34, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
24 10 0.07
25 123 0.86
26 10 0.07
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (25 bp):
AGAGAATTCGCCACAAAGGCATTTC
Found at i:14965591 original size:50 final size:50
Alignment explanation
Indices: 14965509--14965691 Score: 181
Period size: 50 Copynumber: 3.6 Consensus size: 50
14965499 AAGTAACACA
14965509 CCACAAAGGC-TTCCAAAGAGAGTTCGCCACAAAGTCATTTCAGAGAATTCG
1 CCACAAAGGCATTCCAAAGA-A-TTCGCCACAAAGTCATTTCAGAGAATTCG
* * * * * *
14965560 CCACAAAGGCATTCTAAAGTATTCGCGACAAAGGCTTTTCATAGAATTCG
1 CCACAAAGGCATTCCAAAGAATTCGCCACAAAGTCATTTCAGAGAATTCG
** * * * * *
14965610 CCACAAACACGTTCCAAAGAATTTGCCACAAA-TGCGTTTTAGAGAATTTG
1 CCACAAAGGCATTCCAAAGAATTCGCCACAAAGT-CATTTCAGAGAATTCG
* * *
14965660 CCACAAAGGCATTCTAGAGAATTCACCACAAA
1 CCACAAAGGCATTCCAAAGAATTCGCCACAAA
14965692 AGGGTTCCAG
Statistics
Matches: 105, Mismatches: 25, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
50 87 0.83
51 11 0.10
52 7 0.07
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (50 bp):
CCACAAAGGCATTCCAAAGAATTCGCCACAAAGTCATTTCAGAGAATTCG
Found at i:14965666 original size:75 final size:75
Alignment explanation
Indices: 14965552--14965733 Score: 188
Period size: 75 Copynumber: 2.4 Consensus size: 75
14965542 GTCATTTCAG
* * * * * * * * * *
14965552 AGAATTCGCCACAAAGGCATTCTAAAGTATTCGCGACAAAGGC-TTTTCATAGAATTCGCCACAA
1 AGAATTTGCCACAAAGGCGTTTTAGAGAATTTGCCACAAAGGCATTCT-AGAGAATTCACCACAA
14965616 ACA-CGTTCCAA
65 A-AGCGTTCCAA
*
14965627 AGAATTTGCCACAAATGCGTTTTAGAGAATTTGCCACAAAGGCATTCTAGAGAATTCACCACAAA
1 AGAATTTGCCACAAAGGCGTTTTAGAGAATTTGCCACAAAGGCATTCTAGAGAATTCACCACAAA
* *
14965692 AGGGTTCCAG
66 AGCGTTCCAA
* **
14965702 AGTATTTGCCACAAAGGTTTTTTAGAGAATTT
1 AGAATTTGCCACAAAGGCGTTTTAGAGAATTT
14965734 TGTGTTTACC
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
74 1 0.01
75 84 0.95
76 3 0.03
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (75 bp):
AGAATTTGCCACAAAGGCGTTTTAGAGAATTTGCCACAAAGGCATTCTAGAGAATTCACCACAAA
AGCGTTCCAA
Found at i:14968741 original size:26 final size:27
Alignment explanation
Indices: 14968707--14968758 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
14968697 AGAATGTATG
*
14968707 TATATTTTAGTATTTTCTATAATTTTT
1 TATATTTTAGAATTTTCTATAATTTTT
* *
14968734 TATA-TTTAGAATTTTTTATTATTTT
1 TATATTTTAGAATTTTCTATAATTTT
14968759 AAATTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (27 bp):
TATATTTTAGAATTTTCTATAATTTTT
Found at i:14968756 original size:17 final size:16
Alignment explanation
Indices: 14968727--14968773 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
14968717 TATTTTCTAT
14968727 AATTTTTTATA-TTTA
1 AATTTTTTATATTTTA
14968742 GAATTTTTTATTATTTTA
1 -AATTTTTTA-TATTTTA
14968760 AATTTTTT-TATTTT
1 AATTTTTTATATTTT
14968774 TCCTTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 6 0.21
16 9 0.31
17 10 0.34
18 4 0.14
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (16 bp):
AATTTTTTATATTTTA
Found at i:14968774 original size:16 final size:16
Alignment explanation
Indices: 14968717--14968774 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 16
14968707 TATATTTTAG
*
14968717 TATTTTCTATAATTTTT
1 TATTTT-TAGAATTTTT
*
14968734 TATATTTAGAATTTTT
1 TATTTTTAGAATTTTT
14968750 TATTATTTTA-AATTTTTT
1 TA-T-TTTTAGAA-TTTTT
14968768 TATTTTT
1 TATTTTT
14968775 CCTTTTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
16 15 0.43
17 9 0.26
18 11 0.31
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (16 bp):
TATTTTTAGAATTTTT
Found at i:14968797 original size:16 final size:16
Alignment explanation
Indices: 14968778--14968833 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 16
14968768 TATTTTTCCT
14968778 TTTTATTTTAAATAAA
1 TTTTATTTTAAATAAA
* *
14968794 TTTTATTTTATATAAT
1 TTTTATTTTAAATAAA
14968810 TTATATATTATTATAATAAA
1 TT-T-TATT-TTA-AATAAA
14968830 TTTT
1 TTTT
14968834 CATAAATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
16 16 0.50
17 1 0.03
18 5 0.16
19 4 0.12
20 6 0.19
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTATTTTAAATAAA
Found at i:14973142 original size:2 final size:2
Alignment explanation
Indices: 14973137--14973174 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
14973127 CTGCCTTTTT
14973137 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
14973175 GTAGGAGAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:14976712 original size:30 final size:30
Alignment explanation
Indices: 14976676--14976736 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
14976666 TGGTTGAACC
14976676 TTGGTTCTTCTTTCCATGGTGTTTTGGTGA
1 TTGGTTCTTCTTTCCATGGTGTTTTGGTGA
*
14976706 TTGGTTCTTCTTTTCATGGTGTTTTGGTGA
1 TTGGTTCTTCTTTCCATGGTGTTTTGGTGA
14976736 T
1 T
14976737 GAACAAAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.07, C:0.11, G:0.26, T:0.56
Consensus pattern (30 bp):
TTGGTTCTTCTTTCCATGGTGTTTTGGTGA
Found at i:14978602 original size:27 final size:27
Alignment explanation
Indices: 14978583--14978882 Score: 343
Period size: 27 Copynumber: 11.2 Consensus size: 27
14978573 GGGTATAACA
**
14978583 GTCATTTTACCCTATGGGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
14978610 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
14978637 GTCATTTTATCCTAT-GGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
14978663 ATCATTTTACCCTATGAGGGTATTTAG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
14978690 GTCATTCTACCTTTTGGGGGTTTTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
14978717 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
14978744 GTCAATTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
14978771 ATTATTTTATCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
14978798 GTCATTCTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
14978825 ATCATTTTACCCTTTGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * ** *
14978852 ATCA-TTTATCCTATGAAGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
14978878 GTCAT
1 GTCAT
14978883 AACAGTGTAA
Statistics
Matches: 229, Mismatches: 42, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
26 45 0.20
27 184 0.80
ACGTcount: A:0.18, C:0.16, G:0.22, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:14981011 original size:22 final size:24
Alignment explanation
Indices: 14980983--14981026 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
14980973 TATGACAAGA
14980983 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGTTAGAAAAGTAAGTATG
14981005 AATTAAGTTAGAAAAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
14981027 AACTTAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTATG
Found at i:14981626 original size:37 final size:38
Alignment explanation
Indices: 14981525--14981626 Score: 89
Period size: 37 Copynumber: 2.6 Consensus size: 38
14981515 CAACCTTGAG
*
14981525 TCGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGAC
1 TCGATGAGACACTGGGTGTCA--A-CTTTCTTCGGATAGAC
* ** ** * **
14981566 TCGATAAGGTACTGGGTACCAACTTTCTTCGGCTTTAC
1 TCGATGAGACACTGGGTGTCAACTTTCTTCGGATAGAC
14981604 -CGATGAGACACTGGGTGTCAACT
1 TCGATGAGACACTGGGTGTCAACT
14981627 ATTGTTTTGA
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
37 18 0.38
38 12 0.26
39 1 0.02
41 16 0.34
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.30
Consensus pattern (38 bp):
TCGATGAGACACTGGGTGTCAACTTTCTTCGGATAGAC
Found at i:14983580 original size:15 final size:16
Alignment explanation
Indices: 14983556--14983591 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
14983546 ATCATAAGAA
14983556 ATTTTT-TTTATT-TT
1 ATTTTTATTTATTATT
14983570 ATTTTTATTTATTATT
1 ATTTTTATTTATTATT
14983586 -TTTTTA
1 ATTTTTA
14983592 AAACTCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 6 0.30
15 12 0.60
16 2 0.10
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
ATTTTTATTTATTATT
Found at i:14988211 original size:180 final size:180
Alignment explanation
Indices: 14987898--14988256 Score: 592
Period size: 180 Copynumber: 2.0 Consensus size: 180
14987888 GGAGCTTCTA
*
14987898 TATTCTCAAAGATTGACTTAAGGTCAGGTTATTATCAGTTGAAGGTAAAAGAAAGTGATGTACCG
1 TATTCTCAAAGACTGACTTAAGGTCAGGTTATTATCAGTTGAAGGTAAAAGAAAGTGATGTACCG
* * * ** *
14987963 AAGCCAGCTTTCCGTACGAGGTAAAGCCGCTATGAGTTCTTAGTAATGCCATTTGGGTTGATAAA
66 AAGACAGCTTTCCATACGAGGTAAAGCCACTATGAGTTCTTAGTAATGCCATTCAGGTTGACAAA
** *
14988028 TGCCCCAGCCACTTTTATGGATCTTATGAATCTTATTTTTCAGCCGTATG
131 TGCCCCAGCCACTTTTATCAATCTTATGAATCGTATTTTTCAGCCGTATG
*
14988078 TATTCTCGAAGACTGACTTAAGGTCAGGTTATTATCAGTTGAAGGTAAAAGAAAGTGATGTACCG
1 TATTCTCAAAGACTGACTTAAGGTCAGGTTATTATCAGTTGAAGGTAAAAGAAAGTGATGTACCG
**
14988143 AAGACAGCTTTCCATACGAGGTATGGCCACTATGAGTTCTTAGTAATGCCATTCAGGTTGACAAA
66 AAGACAGCTTTCCATACGAGGTAAAGCCACTATGAGTTCTTAGTAATGCCATTCAGGTTGACAAA
*
14988208 TGCCCCAGCCGCTTTTATCAATCTTATGAATCGTATTTTTCAGCCGTAT
131 TGCCCCAGCCACTTTTATCAATCTTATGAATCGTATTTTTCAGCCGTAT
14988257 TTAGACCAGT
Statistics
Matches: 165, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
180 165 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (180 bp):
TATTCTCAAAGACTGACTTAAGGTCAGGTTATTATCAGTTGAAGGTAAAAGAAAGTGATGTACCG
AAGACAGCTTTCCATACGAGGTAAAGCCACTATGAGTTCTTAGTAATGCCATTCAGGTTGACAAA
TGCCCCAGCCACTTTTATCAATCTTATGAATCGTATTTTTCAGCCGTATG
Found at i:14999975 original size:24 final size:23
Alignment explanation
Indices: 14999948--15000021 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 23
14999938 ATCTTGTTTA
14999948 CCATGATGCCATGGCATCTATCAC
1 CCATGATGCCAT-GCATCTATCAC
* *
14999972 CCATGCT-CTTACT-CAT-TATCA-
1 CCATGATGC-CA-TGCATCTATCAC
*
14999993 TCATGATGCCATAGCATCTATCAC
1 CCATGATGCCAT-GCATCTATCAC
15000017 CCATG
1 CCATG
15000022 CTCTTACTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
20 1 0.03
21 6 0.16
22 9 0.24
23 9 0.24
24 11 0.30
25 1 0.03
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (23 bp):
CCATGATGCCATGCATCTATCAC
Found at i:14999992 original size:22 final size:22
Alignment explanation
Indices: 14999966--15000037 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
14999956 CCATGGCATC
14999966 TATCACCCATGCTCTTACTCAT
1 TATCACCCATGCTCTTACTCAT
* * * *
14999988 TATCA-TCATGATGCCATA-GCAT
1 TATCACCCATGCT--CTTACTCAT
15000010 CTATCACCCATGCTCTTACTCAT
1 -TATCACCCATGCTCTTACTCAT
15000033 TATCA
1 TATCA
15000038 TCATGATGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
21 5 0.14
22 16 0.43
23 11 0.30
24 5 0.14
ACGTcount: A:0.26, C:0.32, G:0.07, T:0.35
Consensus pattern (22 bp):
TATCACCCATGCTCTTACTCAT
Found at i:15000078 original size:45 final size:45
Alignment explanation
Indices: 14999949--15000056 Score: 207
Period size: 45 Copynumber: 2.4 Consensus size: 45
14999939 TCTTGTTTAC
*
14999949 CATGATGCCATGGCATCTATCACCCATGCTCTTACTCATTATCAT
1 CATGATGCCATAGCATCTATCACCCATGCTCTTACTCATTATCAT
14999994 CATGATGCCATAGCATCTATCACCCATGCTCTTACTCATTATCAT
1 CATGATGCCATAGCATCTATCACCCATGCTCTTACTCATTATCAT
15000039 CATGATGCCATAGCATCT
1 CATGATGCCATAGCATCT
15000057 TTCAACTATA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (45 bp):
CATGATGCCATAGCATCTATCACCCATGCTCTTACTCATTATCAT
Found at i:15002220 original size:30 final size:30
Alignment explanation
Indices: 15002186--15002248 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
15002176 CTATTTTTTT
15002186 ATTCGATAACC-AAGGCTATCCCTTTTCATA
1 ATTCGATAACCGAA-GCTATCCCTTTTCATA
15002216 ATTCGATAACCGAAGCTATCCCTTTTCATA
1 ATTCGATAACCGAAGCTATCCCTTTTCATA
15002246 ATT
1 ATT
15002249 TGATGGTCGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 30 0.94
31 2 0.06
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (30 bp):
ATTCGATAACCGAAGCTATCCCTTTTCATA
Found at i:15002267 original size:30 final size:30
Alignment explanation
Indices: 15002233--15002396 Score: 152
Period size: 30 Copynumber: 5.5 Consensus size: 30
15002223 AACCGAAGCT
15002233 ATCCCTTTTCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
** * *
15002263 ATCCCTTTTCATTGTTCGATGGTCGCCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
* * * * *
15002293 ATCCTTTTTCGTAATTTGATAGCCG-AAGCC
1 ATCCCTTTTCATAATTTGATGGTCGTCA-CC
* * **
15002323 ATCCCTTTTCCTAGTTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
* * *
15002353 ATCCATTTCCGTAA-TTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
*
15002382 ATCCCGTTTCATAAT
1 ATCCCTTTTCATAAT
15002397 CGATAGCAGA
Statistics
Matches: 101, Mismatches: 30, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
29 24 0.24
30 76 0.75
31 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCGTCACC
Found at i:15002302 original size:60 final size:60
Alignment explanation
Indices: 15002233--15002394 Score: 193
Period size: 60 Copynumber: 2.7 Consensus size: 60
15002223 AACCGAAGCT
* * * *
15002233 ATCCCTTTTCATAATTTGATGGTCGTCACCATCCCTTTTCATTGTTCGATGGTCGCCACC
1 ATCCATTTTCGTAATTTGATGGTCGTCACCATCCCTTTTCATAGTTCAATGGTCGCCACC
* * * * * *
15002293 ATCCTTTTTCGTAATTTGATAGCCG-AAGCCATCCCTTTTCCTAGTTCAATGGTCGTCACC
1 ATCCATTTTCGTAATTTGATGGTCGTCA-CCATCCCTTTTCATAGTTCAATGGTCGCCACC
* *
15002353 ATCCATTTCCGTAA-TTGATGGTCGTCACCATCCCGTTTCATA
1 ATCCATTTTCGTAATTTGATGGTCGTCACCATCCCTTTTCATA
15002395 ATCGATAGCA
Statistics
Matches: 84, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
59 22 0.26
60 62 0.74
ACGTcount: A:0.19, C:0.29, G:0.15, T:0.37
Consensus pattern (60 bp):
ATCCATTTTCGTAATTTGATGGTCGTCACCATCCCTTTTCATAGTTCAATGGTCGCCACC
Found at i:15002308 original size:90 final size:89
Alignment explanation
Indices: 15002203--15002423 Score: 264
Period size: 90 Copynumber: 2.5 Consensus size: 89
15002193 AACCAAGGCT
* ** *
15002203 ATCCCTTTTCATAATTCGATAACCGAAGCTATCCCTTTTCATAATTTGATGGTCGTCACCATCCC
1 ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATAATTCAATGGTCGTCACCATCCA
* **
15002268 TTTTCATTGTTCGATGGTCGCCACC
66 TTTCCATAATT-GATGGTCGCCACC
* * * * * *
15002293 ATCCTTTTTCGTAATTTGATAGCCGAAGCCATCCCTTTTCCTAGTTCAATGGTCGTCACCATCCA
1 ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATAATTCAATGGTCGTCACCATCCA
* *
15002358 TTTCCGTAATTGATGGTCGTCACC
66 TTTCCATAATTGATGGTCGCCACC
* * *
15002382 ATCCCGTTTCATAA-TCGATAGCAGAAGTTATCCCTTTTCATA
1 ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATA
15002424 GTCGATATCC
Statistics
Matches: 108, Mismatches: 23, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
88 23 0.21
89 23 0.21
90 62 0.57
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.36
Consensus pattern (89 bp):
ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATAATTCAATGGTCGTCACCATCCA
TTTCCATAATTGATGGTCGCCACC
Found at i:15002415 original size:29 final size:29
Alignment explanation
Indices: 15002382--15002444 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
15002372 GGTCGTCACC
*
15002382 ATCCCGTTTCATAATCGATAGCAGAAGTT
1 ATCCCGTTTCATAATCGATAGCAGAAGCT
* * * *
15002411 ATCCCTTTTCATAGTCGATATCCGAAGCT
1 ATCCCGTTTCATAATCGATAGCAGAAGCT
15002440 ATCCC
1 ATCCC
15002445 ATTTTACCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (29 bp):
ATCCCGTTTCATAATCGATAGCAGAAGCT
Found at i:15009872 original size:30 final size:30
Alignment explanation
Indices: 15009838--15009997 Score: 146
Period size: 30 Copynumber: 5.4 Consensus size: 30
15009828 GAAGCTATCT
15009838 CTTTTCATAATTTGATGGTCATCACCATCC
1 CTTTTCATAATTTGATGGTCATCACCATCC
** * * *
15009868 CTTTTCATTGTTCGACGGTCGTCACCATCC
1 CTTTTCATAATTTGATGGTCATCACCATCC
*** *
15009898 CTTTTCATAATTTGATAACCA-AAGCCATCC
1 CTTTTCATAATTTGATGGTCATCA-CCATCC
* * * *
15009928 CTTTTCATAGTTCGATGATCGTCACCATCC
1 CTTTTCATAATTTGATGGTCATCACCATCC
* *
15009958 ATTTCCATAA-TTGATGGTCATCACCA-CTC
1 CTTTTCATAATTTGATGGTCATCACCATC-C
15009987 CTTTTCATAAT
1 CTTTTCATAAT
15009998 CGATAGCCAA
Statistics
Matches: 98, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
28 1 0.01
29 23 0.23
30 73 0.74
31 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.11, T:0.38
Consensus pattern (30 bp):
CTTTTCATAATTTGATGGTCATCACCATCC
Found at i:15009898 original size:90 final size:89
Alignment explanation
Indices: 15009804--15009997 Score: 237
Period size: 90 Copynumber: 2.2 Consensus size: 89
15009794 AGTGGAGGCT
* * * * * *
15009804 ATCCCTTTTCATAATTTAATAACCGAAGCTATCTCTTTTCATAATTTGATGGTCATCACCATCCC
1 ATCCCTTTTCATAATTTAATAACCAAAGCCATCCCTTTTCATAATTCGATGATCATCACCATCCA
* ** *
15009869 TTTTCATTGTTCGACGGTCGTCACC
66 TTTCCATAATT-GACGGTCATCACC
* * *
15009894 ATCCCTTTTCATAATTTGATAACCAAAGCCATCCCTTTTCATAGTTCGATGATCGTCACCATCCA
1 ATCCCTTTTCATAATTTAATAACCAAAGCCATCCCTTTTCATAATTCGATGATCATCACCATCCA
*
15009959 TTTCCATAATTGATGGTCATCACC
66 TTTCCATAATTGACGGTCATCACC
15009983 A-CTCCTTTTCATAAT
1 ATC-CCTTTTCATAAT
15009998 CGATAGCCAA
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
88 1 0.01
89 24 0.27
90 64 0.72
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38
Consensus pattern (89 bp):
ATCCCTTTTCATAATTTAATAACCAAAGCCATCCCTTTTCATAATTCGATGATCATCACCATCCA
TTTCCATAATTGACGGTCATCACC
Found at i:15009902 original size:60 final size:60
Alignment explanation
Indices: 15009838--15009995 Score: 196
Period size: 60 Copynumber: 2.6 Consensus size: 60
15009828 GAAGCTATCT
* *
15009838 CTTTTCATAATTTGATGGTCATCACCATCCCTTTTCATTGTTCGACGGTCGTCACCATCC
1 CTTTTCATAATTTGATGGTCATCACCATCCCTTTTCATAGTTCGACGATCGTCACCATCC
*** * *
15009898 CTTTTCATAATTTGATAACCA-AAGCCATCCCTTTTCATAGTTCGATGATCGTCACCATCC
1 CTTTTCATAATTTGATGGTCATCA-CCATCCCTTTTCATAGTTCGACGATCGTCACCATCC
* *
15009958 ATTTCCATAA-TTGATGGTCATCACCA-CTCCTTTTCATA
1 CTTTTCATAATTTGATGGTCATCACCATC-CCTTTTCATA
15009996 ATCGATAGCC
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
58 1 0.01
59 21 0.26
60 60 0.73
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.37
Consensus pattern (60 bp):
CTTTTCATAATTTGATGGTCATCACCATCCCTTTTCATAGTTCGACGATCGTCACCATCC
Found at i:15010020 original size:29 final size:29
Alignment explanation
Indices: 15009988--15010044 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
15009978 TCACCACTCC
15009988 TTTTCATAATCGATAGCCAAAGCTATCCT
1 TTTTCATAATCGATAGCCAAAGCTATCCT
** * * *
15010017 TTTTTGTAGTCGATAGTCGAAGCTATCC
1 TTTTCATAATCGATAGCCAAAGCTATCC
15010045 CATTTCACCC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (29 bp):
TTTTCATAATCGATAGCCAAAGCTATCCT
Found at i:15011225 original size:19 final size:20
Alignment explanation
Indices: 15011181--15011228 Score: 80
Period size: 21 Copynumber: 2.4 Consensus size: 20
15011171 GGCTGTTACA
15011181 TTTGTGAACTTGATCAAACTC
1 TTTGTGAACTTGATCAAAC-C
15011202 TTTGTGAACTTGATCAAA-C
1 TTTGTGAACTTGATCAAACC
15011221 TTTGTGAA
1 TTTGTGAA
15011229 GATTCAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 9 0.33
21 18 0.67
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.40
Consensus pattern (20 bp):
TTTGTGAACTTGATCAAACC
Found at i:15012259 original size:20 final size:20
Alignment explanation
Indices: 15012234--15012274 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
15012224 CAATTCAGGT
*
15012234 AAAGGAATTGAAGAAAGAAG
1 AAAGGAATGGAAGAAAGAAG
15012254 AAAGGAATGGAAGAAAGAAG
1 AAAGGAATGGAAGAAAGAAG
15012274 A
1 A
15012275 TTTTGGGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.32, T:0.07
Consensus pattern (20 bp):
AAAGGAATGGAAGAAAGAAG
Found at i:15015484 original size:31 final size:30
Alignment explanation
Indices: 15015413--15015471 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
15015403 GAATTTGATT
* *
15015413 AAATCAAAATTTCATATATAAATTTGCACA
1 AAATCAAAGTTTCATATATAAAGTTGCACA
15015443 AAATCAAAGTTT-ATATATAAAGTTGCACA
1 AAATCAAAGTTTCATATATAAAGTTGCACA
15015472 TTGAATCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (30 bp):
AAATCAAAGTTTCATATATAAAGTTGCACA
Found at i:15017158 original size:6 final size:6
Alignment explanation
Indices: 15017149--15017173 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15017139 TTTAATTTGC
15017149 TTGAAT TTGAAT TTGAAT TTGAAT T
1 TTGAAT TTGAAT TTGAAT TTGAAT T
15017174 GATGGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TTGAAT
Found at i:15024292 original size:7 final size:7
Alignment explanation
Indices: 15024280--15024304 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15024270 GTCCTTAAAC
15024280 ATTTTAA
1 ATTTTAA
15024287 ATTTTAA
1 ATTTTAA
15024294 ATTTTAA
1 ATTTTAA
15024301 ATTT
1 ATTT
15024305 CAACCCTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTTAA
Found at i:15024740 original size:3 final size:3
Alignment explanation
Indices: 15024732--15024761 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
15024722 TGAAGAATTA
15024732 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
15024762 AATATAAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:15029345 original size:114 final size:114
Alignment explanation
Indices: 15029040--15029532 Score: 333
Period size: 114 Copynumber: 4.3 Consensus size: 114
15029030 TGGTCATAAA
* * * * * *
15029040 CGCCGCAAAAACTATTAAGAAAAAC-ACTGCCATTTTCAGTTTAGGTTTTGGGGACTTTAGTGGC
1 CGCCGC-AAAACTGTTAAG-AAAACGA-TGTCGTTTTCAATTTAGGTTTTAGAGACTTTAGTGGC
*
15029104 GCTTAAT-GAAAAACGCCGCTATAGTCAAGAATTAGCGGCGCTTTATCATAAG
63 GCTT-ATCGAAAAACGCCGCTATAGTCAAGAATTAGCGGCGCTTTATCAGAAG
* * * ** * * *
15029156 CGTCGCAAGACTGTTAAGAAAACGTTGTCGTTTTTC-ATTTATCTTTTCGAGACGTTAGTGGCGA
1 CGCCGCAAAACTGTTAAGAAAACGATGTCG-TTTTCAATTTAGGTTTTAGAGACTTTAGTGGCGC
* * ** *
15029220 TTTTCGGAAAACGCCG-TAGTAG-CGAAGCTTTAGTGGCGCTTTATCAGAAG
65 TTATCGAAAAACGCCGCTA-TAGTC-AAGAATTAGCGGCGCTTTATCAGAAG
*
15029270 TGCCGCAAAACTGTTAAGAAAACGATGTCGTTTTCAATTTAGGTTTTAGAGACTTTAGTGGCGCT
1 CGCCGCAAAACTGTTAAGAAAACGATGTCGTTTTCAATTTAGGTTTTAGAGACTTTAGTGGCGCT
* * * * * * * * *
15029335 TGTCTAAAAACGCCACCA-AAT-ATAGAAATTAGCGGCGATTTCTAAAAAG
66 TATCGAAAAACGCCGCTATAGTCA-AG-AATTAGCGGCGCTTTATCAGAAG
*** * * * * * * * *
15029384 CGCCGCAAATGAGTTAAGCCAAACGATGCCGTTTGC-TTGTTGAGCTTTT-GTGACATTGGTGGC
1 CGCCGCAAAACTGTTAAG-AAAACGATGTCGTTTTCAAT-TT-AGGTTTTAGAGACTTTAGTGGC
* * * * *
15029447 GCTT-TCGTAGAAACGCCGC-AAACTGTGAAGAATTAGCGGCGCTTTAACATAAG
63 GCTTATCG-AAAAACGCCGCTATA--GTCAAGAATTAGCGGCGCTTTATCAGAAG
* * *
15029500 CGCCGCAAGACTATTAAGCAAACGATGTCGTTT
1 CGCCGCAAAACTGTTAAGAAAACGATGTCGTTT
15029533 ATTATTTAGC
Statistics
Matches: 291, Mismatches: 68, Indels: 37
0.73 0.17 0.09
Matches are distributed among these distances:
112 1 0.00
113 12 0.04
114 161 0.55
115 71 0.24
116 42 0.14
117 3 0.01
118 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (114 bp):
CGCCGCAAAACTGTTAAGAAAACGATGTCGTTTTCAATTTAGGTTTTAGAGACTTTAGTGGCGCT
TATCGAAAAACGCCGCTATAGTCAAGAATTAGCGGCGCTTTATCAGAAG
Found at i:15030041 original size:15 final size:15
Alignment explanation
Indices: 15030021--15030053 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
15030011 CTTAAGGATT
*
15030021 GGGGTTAAGGGTTTA
1 GGGGTTAAGGGTTAA
15030036 GGGGTTAAGGGTTAA
1 GGGGTTAAGGGTTAA
15030051 GGG
1 GGG
15030054 CTGGGGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.52, T:0.27
Consensus pattern (15 bp):
GGGGTTAAGGGTTAA
Found at i:15031897 original size:21 final size:22
Alignment explanation
Indices: 15031873--15031928 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
15031863 TATGGATTAT
*
15031873 GGTTTAAGGG-TTGGGGTTAAG
1 GGTTTAAGGGTTTAGGGTTAAG
*
15031894 GGTTTATGGGTTTAGGGTT-AG
1 GGTTTAAGGGTTTAGGGTTAAG
* *
15031915 GGGTTAGGGGTTTA
1 GGTTTAAGGGTTTA
15031929 TAGTTAATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 23 0.77
22 7 0.23
ACGTcount: A:0.16, C:0.00, G:0.46, T:0.38
Consensus pattern (22 bp):
GGTTTAAGGGTTTAGGGTTAAG
Found at i:15031905 original size:29 final size:28
Alignment explanation
Indices: 15031869--15031929 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
15031859 GGCTTATGGA
15031869 TTATGGTTTAAGGGTT-GGGGTTAAGGGT
1 TTATGGTTT-AGGGTTAGGGGTTAAGGGT
*
15031897 TTATGGGTTTAGGGTTAGGGGTTAGGGGT
1 TTAT-GGTTTAGGGTTAGGGGTTAAGGGT
15031926 TTAT
1 TTAT
15031930 AGTTAATGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.16, C:0.00, G:0.43, T:0.41
Consensus pattern (28 bp):
TTATGGTTTAGGGTTAGGGGTTAAGGGT
Found at i:15034330 original size:15 final size:15
Alignment explanation
Indices: 15034310--15034338 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15034300 CTGTGCTTCC
15034310 TGTGCTTCCTGTAAT
1 TGTGCTTCCTGTAAT
15034325 TGTGCTTCCTGTAA
1 TGTGCTTCCTGTAA
15034339 CTGTTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.45
Consensus pattern (15 bp):
TGTGCTTCCTGTAAT
Found at i:15035435 original size:17 final size:17
Alignment explanation
Indices: 15035415--15035464 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
15035405 TTAATATCTA
15035415 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
*
15035432 TATAAATTTTCT-AA--
1 TATAAGTTTTCTAAATT
15035446 -ATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
15035462 TAT
1 TAT
15035465 TTGTATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 10 0.37
14 2 0.07
16 2 0.07
17 13 0.48
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:15035491 original size:15 final size:15
Alignment explanation
Indices: 15035456--15035494 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
15035446 ATAAGTTTTC
*
15035456 TAAATTTATTTGTAT
1 TAAATTTATTAGTAT
15035471 TAAAATTTATTAGTAT
1 T-AAATTTATTAGTAT
15035487 TAAATTTA
1 TAAATTTA
15035495 CTTCGTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (15 bp):
TAAATTTATTAGTAT
Found at i:15035537 original size:62 final size:61
Alignment explanation
Indices: 15035426--15035574 Score: 165
Period size: 62 Copynumber: 2.4 Consensus size: 61
15035416 ATAAGTTTTC
* * *** * *
15035426 TAAATTTATAAATTTTCTAAATAAGTTTTCTAAATTTATTTGTATTAAAATTTAT-TAGTAT
1 TAAATTTATAAGTTTTCTAAATAAGTGTTCTAAATTTAGGAGAAATAAAATTTATGT-GTAT
** *
15035487 TAAATTTACTTCGTTTTCTAAATAAGTGTTCTAAATTTGGGAGAAATAAAATTTATGTGTAT
1 TAAATTTA-TAAGTTTTCTAAATAAGTGTTCTAAATTTAGGAGAAATAAAATTTATGTGTAT
* *
15035549 TAATTTTATAAGTTTTCTACATAAGT
1 TAAATTTATAAGTTTTCTAAATAAGT
15035575 TACATAATAC
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
61 23 0.32
62 48 0.67
63 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.48
Consensus pattern (61 bp):
TAAATTTATAAGTTTTCTAAATAAGTGTTCTAAATTTAGGAGAAATAAAATTTATGTGTAT
Found at i:15035644 original size:21 final size:21
Alignment explanation
Indices: 15035616--15035676 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
15035606 ACTTATATAA
*
15035616 TACATAACTTATAT-TTAAGTT
1 TACATAACTTATATAATAA-TT
* *
15035637 TGCATAACTTACATAATAATT
1 TACATAACTTATATAATAATT
15035658 TACATAACTTATAT-ATAAT
1 TACATAACTTATATAATAAT
15035677 AACATAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 5 0.15
21 26 0.76
22 3 0.09
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (21 bp):
TACATAACTTATATAATAATT
Found at i:15035739 original size:21 final size:21
Alignment explanation
Indices: 15035713--15035791 Score: 97
Period size: 21 Copynumber: 3.8 Consensus size: 21
15035703 TGTTATAATA
*
15035713 CATAACTTGTATATAAGCTTG
1 CATAACTTATATATAAGCTTG
*
15035734 CATAACTTATATTTAAGCTTG
1 CATAACTTATATATAAGCTTG
* * *
15035755 CATAACTTACATAATAA-TTTA
1 CATAACTTATAT-ATAAGCTTG
15035776 CATAACTTATATATAA
1 CATAACTTATATATAA
15035792 TAACATAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
20 4 0.08
21 43 0.86
22 3 0.06
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (21 bp):
CATAACTTATATATAAGCTTG
Found at i:15035740 original size:116 final size:116
Alignment explanation
Indices: 15035618--15035858 Score: 473
Period size: 116 Copynumber: 2.1 Consensus size: 116
15035608 TTATATAATA
*
15035618 CATAACTTATATTTAAGTTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
1 CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
15035683 ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
66 ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
15035734 CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
1 CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
15035799 ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
66 ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
15035850 CATAACTTA
1 CATAACTTA
15035859 CATAAATTAA
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 124 1.00
ACGTcount: A:0.43, C:0.12, G:0.05, T:0.40
Consensus pattern (116 bp):
CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
Found at i:15035881 original size:9 final size:9
Alignment explanation
Indices: 15035827--15035889 Score: 63
Period size: 9 Copynumber: 6.7 Consensus size: 9
15035817 TATGTTATAA
15035827 TACATAACTT
1 TACATAAC-T
*
15035837 GTATATAAGCT
1 -TACATAA-CT
*
15035848 TGCATAACT
1 TACATAACT
*
15035857 TACATAAAT
1 TACATAACT
*
15035866 TAAATAACT
1 TACATAACT
15035875 TACATAACT
1 TACATAACT
15035884 TACATA
1 TACATA
15035890 TAATAACATA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
9 30 0.70
10 5 0.12
11 7 0.16
12 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (9 bp):
TACATAACT
Found at i:15035892 original size:101 final size:95
Alignment explanation
Indices: 15035734--15035920 Score: 293
Period size: 101 Copynumber: 1.9 Consensus size: 95
15035724 TATAAGCTTG
* *
15035734 CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
1 CATAACTTATATATAAGCTTGCATAACTTACATAATAATTTACATAACTTACATATAATAACATA
15035799 ATAAATTACATAATACTTTATGTTATAATA
66 ATAAATTACATAATACTTTATGTTATAATA
*
15035829 CATAACTTGTATATAAGCTTGCATAACTTACATAAATTAAATAACTTACATAACTTACATATAAT
1 CATAACTTATATATAAGCTTGCATAACTTACAT-AA-T-AAT---TTACATAACTTACATATAAT
15035894 AACATAATAAATTACATAATACTTTAT
60 AACATAATAAATTACATAATACTTTAT
15035921 ATAATAACAT
Statistics
Matches: 83, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
95 31 0.37
96 2 0.02
97 1 0.01
98 3 0.04
101 46 0.55
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (95 bp):
CATAACTTATATATAAGCTTGCATAACTTACATAATAATTTACATAACTTACATATAATAACATA
ATAAATTACATAATACTTTATGTTATAATA
Found at i:15035908 original size:22 final size:23
Alignment explanation
Indices: 15035868--15035911 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
15035858 ACATAAATTA
* *
15035868 AATAACTTACATAACTTACATAT
1 AATAACATACATAAATTACATAT
15035891 AATAACATA-ATAAATTACATA
1 AATAACATACATAAATTACATA
15035912 ATACTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.32
Consensus pattern (23 bp):
AATAACATACATAAATTACATAT
Found at i:15035923 original size:32 final size:29
Alignment explanation
Indices: 15035868--15035964 Score: 104
Period size: 32 Copynumber: 3.2 Consensus size: 29
15035858 ACATAAATTA
* *
15035868 AATAACTTACATAACTTACATATAATAACAT
1 AATAAATTAAATAACTTA--TATAATAACAT
*
15035899 AATAAATTACATAATACTTTATATAATAACAT
1 AATAAATTAAAT-A-AC-TTATATAATAACAT
**
15035931 AATACCTTAAATAACTTATATAATAACAT
1 AATAAATTAAATAACTTATATAATAACAT
15035960 AATAA
1 AATAA
15035965 CATAATAACT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
29 18 0.31
30 2 0.03
31 12 0.21
32 21 0.36
33 2 0.03
34 3 0.05
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (29 bp):
AATAAATTAAATAACTTATATAATAACAT
Found at i:15035965 original size:20 final size:20
Alignment explanation
Indices: 15035868--15035965 Score: 74
Period size: 20 Copynumber: 4.7 Consensus size: 20
15035858 ACATAAATTA
15035868 AATAACTTACATAACTTACATAT
1 AATAACTTA-ATAACTTAC--AT
* *
15035891 AATAACATAATAAATTACAT
1 AATAACTTAATAACTTACAT
*
15035911 AAT-ACTTTATATAA-TAACAT
1 AATAAC-TTA-ATAACTTACAT
* *
15035931 AATACCTTAAATAACTTATAT
1 AATAACTT-AATAACTTACAT
*
15035952 AATAACATAATAAC
1 AATAACTTAATAAC
15035966 ATAATAACTA
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
19 2 0.03
20 27 0.44
21 16 0.26
22 8 0.13
23 8 0.13
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (20 bp):
AATAACTTAATAACTTACAT
Found at i:15036030 original size:9 final size:9
Alignment explanation
Indices: 15036002--15036317 Score: 319
Period size: 9 Copynumber: 34.8 Consensus size: 9
15035992 CATATATAGA
15036002 AACTTACAT
1 AACTTACAT
* * *
15036011 AAATAAAAT
1 AACTTACAT
15036020 AACTTACAT
1 AACTTACAT
* *
15036029 AAATTAAAT
1 AACTTACAT
15036038 AACTTACAT
1 AACTTACAT
15036047 AACTTACAT
1 AACTTACAT
*
15036056 AAACTTGCAT
1 -AACTTACAT
* *
15036066 AAATTAAAT
1 AACTTACAT
15036075 AACTTACAT
1 AACTTACAT
15036084 AACTTACAT
1 AACTTACAT
*
15036093 AACCTACAT
1 AACTTACAT
* *
15036102 AAATTAAAT
1 AACTTACAT
15036111 AACTTACAT
1 AACTTACAT
* *
15036120 AAATTAAAT
1 AACTTACAT
15036129 AACTTACAT
1 AACTTACAT
15036138 AACTTACAT
1 AACTTACAT
* *
15036147 AAATTTGCAT
1 -AACTTACAT
* *
15036157 AAATTAAAT
1 AACTTACAT
15036166 AACTTACAT
1 AACTTACAT
15036175 AACTTACAT
1 AACTTACAT
*
15036184 AACCTACAT
1 AACTTACAT
* *
15036193 AAATTAAAT
1 AACTTACAT
15036202 AACTTACAT
1 AACTTACAT
15036211 AACTTACAT
1 AACTTACAT
* *
15036220 AAATTAAAT
1 AACTTACAT
15036229 AACTTACAT
1 AACTTACAT
15036238 AACTTACAT
1 AACTTACAT
* * *
15036247 AAATTTCGT
1 AACTTACAT
*
15036256 GGACTTACAT
1 -AACTTACAT
*
15036266 AACCTACAT
1 AACTTACAT
* *
15036275 AAATTAAAT
1 AACTTACAT
15036284 AACTTACAT
1 AACTTACAT
15036293 AACTTACAT
1 AACTTACAT
*
15036302 AAATTGA-AT
1 AACTT-ACAT
15036311 AACTTAC
1 AACTTAC
15036318 CCGTGCAAAT
Statistics
Matches: 243, Mismatches: 59, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
8 1 0.00
9 221 0.91
10 21 0.09
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:15036111 original size:91 final size:91
Alignment explanation
Indices: 15036006--15036317 Score: 446
Period size: 91 Copynumber: 3.4 Consensus size: 91
15035996 TATAGAAACT
*
15036006 TACATAAATAAAATAACTTACATAAATTAAATAACTTACATAACTTACATAAACTTGCATAAATT
1 TACATAAATTAAATAACTTACATAAATTAAATAACTTACATAACTTACATAAACTTGCATAAATT
15036071 AAATAACTTACATAACTTACATAACC
66 AAATAACTTACATAACTTACATAACC
*
15036097 TACATAAATTAAATAACTTACATAAATTAAATAACTTACATAACTTACATAAATTTGCATAAATT
1 TACATAAATTAAATAACTTACATAAATTAAATAACTTACATAACTTACATAAACTTGCATAAATT
15036162 AAATAACTTACATAACTTACATAACC
66 AAATAACTTACATAACTTACATAACC
* * * * *
15036188 TACATAAATTAAATAACTTACATAACTTACATAAATTAAATAACTTACAT-AACTTACATAAATT
1 TACATAAATTAAATAACTTACATAAATTAAATAACTTACATAACTTACATAAACTTGCATAAATT
*** * * **
15036252 TCGTGGACTTACATAACCTACATAAAT
66 AAAT-AACTTACATAACTTACATAACC
* * * *
15036279 TAAATAACTTACATAACTTACATAAATTGAATAACTTAC
1 TACATAAATTAAATAACTTACATAAATTAAATAACTTAC
15036318 CCGTGCAAAT
Statistics
Matches: 197, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
90 13 0.07
91 184 0.93
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (91 bp):
TACATAAATTAAATAACTTACATAAATTAAATAACTTACATAACTTACATAAACTTGCATAAATT
AAATAACTTACATAACTTACATAACC
Found at i:15039787 original size:37 final size:37
Alignment explanation
Indices: 15039716--15039787 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
15039706 ATATATATAT
* *
15039716 ATATAAAATATTTACAATAATGATGTAAATAAACAAC
1 ATATAAAATATTTACAATAATCATATAAATAAACAAC
15039753 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ACAATAATCATATAAAT-AAACA
15039788 TTTAAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.29
Consensus pattern (37 bp):
ATATAAAATATTTACAATAATCATATAAATAAACAAC
Found at i:15041363 original size:44 final size:44
Alignment explanation
Indices: 15041297--15041514 Score: 242
Period size: 44 Copynumber: 5.0 Consensus size: 44
15041287 TCCACTTCCT
* *
15041297 ACCAATATAGGAAGGCAGGATCTGCTATCTTCGATCTACTTCAC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC
* * * * * * *
15041341 GCCAATATATGAAGATAAGATCTGCTTTCTTCGGTCTATTTCGCC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-AC
* * *
15041386 ACCAGTATAGGAAGACAAGATCTGC-ATCGTCGATCCACTTC-C
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC
* *
15041428 TACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCAC
1 -ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC
* * * *
15041473 GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
1 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC
15041515 TTGCCCCGGG
Statistics
Matches: 141, Mismatches: 29, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
42 1 0.01
43 22 0.16
44 95 0.67
45 23 0.16
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC
Found at i:15041649 original size:46 final size:46
Alignment explanation
Indices: 15041598--15042065 Score: 173
Period size: 46 Copynumber: 10.4 Consensus size: 46
15041588 ACCTGCTTTG
* *
15041598 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * ** * *
15041644 CTGCCAAATATAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
*** * * ** * *
15041689 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATC-TTCAATCT-ATTCCA
* *
15041733 CTGCCAAATACAGGAAGGAAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * * ** * * *
15041779 CTGCCAAATATAGGGAGATAGAGTTAT-C-GGCTTCAGTGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
*** * * ** * *
15041824 CTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTT-CG
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATC-TTCAATCT-ATTCCA
* * * *
15041868 CTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCTA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
* * * ** * *
15041914 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGTA-AGATCTGCAATCTTCAATCTATTCCA
** * * ** * *
15041959 CT---ATGGT-CAGGGAGGTAAAATCTGCCATCTTTTGATCTGCTT-CG
1 CTGCCA-AATACAGGGAGGTAAGATCTGCAATC-TTCAATCT-ATTCCA
* *
15042003 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
15042049 CTGCCAAATACAGGGAG
1 CTGCCAAATACAGGGAG
15042066 ATAGAGTTAT
Statistics
Matches: 280, Mismatches: 113, Indels: 58
0.62 0.25 0.13
Matches are distributed among these distances:
41 9 0.03
42 29 0.10
43 6 0.02
44 25 0.09
45 54 0.19
46 91 0.32
47 66 0.24
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (46 bp):
CTGCCAAATACAGGGAGGTAAGATCTGCAATCTTCAATCTATTCCA
Found at i:15041772 original size:135 final size:135
Alignment explanation
Indices: 15041522--15042127 Score: 998
Period size: 135 Copynumber: 4.5 Consensus size: 135
15041512 TTCTTGCCCC
** * ** * *
15041522 GGGAGATAGAACTATCAGCTTCAATGTACTCCACTGTAATCAGGGAGGTAAAATCCGCCGTC-TT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
** * *
15041586 CAACCTGCTTTGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
*
15041651 ATATA
131 ATACA
15041656 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
*
15041721 TGATCTGCTTCGCTGCCAAATACAGGAAGGAAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
*
15041786 ATATA
131 ATACA
*
15041791 GGGAGATAGAGTTATCGGCTTCAGTGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
* *
15041856 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTACAATCTTCAATCTATTCTACTGCCAA
66 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
15041921 ATACA
131 ATACA
*
15041926 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTATGGTCAGGGAGGTAAAATCTGCCATCTTT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
15041991 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
15042056 ATACA
131 ATACA
* * *
15042061 GGGAGATAGAGTTATTGGCTTCAATGTACTCCACTGTAGTCACATGGAGGTAAAATCTGCCATCT
1 GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGT--CAGGGAGGTAAAATCTGCCATCT
15042126 TT
64 TT
15042128 AATCTTCAAT
Statistics
Matches: 444, Mismatches: 25, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
134 55 0.12
135 365 0.82
137 24 0.05
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (135 bp):
GGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTGGTCAGGGAGGTAAAATCTGCCATCTTT
TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
ATACA
Found at i:15042269 original size:95 final size:95
Alignment explanation
Indices: 15042032--15042608 Score: 1055
Period size: 95 Copynumber: 6.0 Consensus size: 95
15042022 AAGATCTGCA
*
15042032 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATTGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
15042097 TAGTCACATGGAGGTAAAATCTGCCATCTTTA
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTTG
15042129 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
15042194 TAGCCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
15042224 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
15042289 TAGTCGGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
*
15042319 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
15042384 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
*
15042414 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
15042479 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
*
15042509 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
15042574 TAGTCAGGGAGGTAAAATCTGCCATCTTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATC-TTTG
15042605 ATCT
1 ATCT
15042609 GCTTCGCTGC
Statistics
Matches: 471, Mismatches: 8, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
95 396 0.84
96 8 0.02
97 67 0.14
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:15043247 original size:108 final size:108
Alignment explanation
Indices: 15043058--15043253 Score: 320
Period size: 108 Copynumber: 1.8 Consensus size: 108
15043048 GAAAAATGCT
*
15043058 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
15043123 CAATCAAGATAACAAATTTTGCTGAGATACGAGATGAATAAGA
66 CAATCAAGATAACAAATTTTGCTGAGATACGAGATGAATAAGA
* * * **
15043166 TGAAAAAGATTATCACAATGGATAAGATGAAAATTTGTTGAGAGCAAAGCTCTAAATGAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
* *
15043231 TAATCAAGATAGCAAATTTTGCT
66 CAATCAAGATAACAAATTTTGCT
15043254 AGAATACAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 80 1.00
ACGTcount: A:0.47, C:0.11, G:0.17, T:0.25
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAACAAATTTTGCTGAGATACGAGATGAATAAGA
Found at i:15044056 original size:11 final size:11
Alignment explanation
Indices: 15044040--15044096 Score: 60
Period size: 11 Copynumber: 5.0 Consensus size: 11
15044030 TCCTGGTAGA
15044040 GTTTTTTTTTT
1 GTTTTTTTTTT
*
15044051 GTTTTTGCTTTT
1 GTTTTT-TTTTT
*
15044063 GTTTTTTATTT
1 GTTTTTTTTTT
* *
15044074 GGTTTTTATTT
1 GTTTTTTTTTT
15044085 GTTCTTTTTTTT
1 GTT-TTTTTTTT
15044097 TGGCCTCCAC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
11 21 0.55
12 17 0.45
ACGTcount: A:0.04, C:0.04, G:0.12, T:0.81
Consensus pattern (11 bp):
GTTTTTTTTTT
Found at i:15045343 original size:62 final size:62
Alignment explanation
Indices: 15045239--15045422 Score: 323
Period size: 62 Copynumber: 3.0 Consensus size: 62
15045229 CTAAACTCGA
* * *
15045239 CGTACTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTGATGCATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
15045301 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATAAAATGTAATGTTAATGCATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
15045363 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAA
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAA
15045423 GAGATACGTG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (62 bp):
CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
Found at i:15047935 original size:37 final size:37
Alignment explanation
Indices: 15047864--15047935 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
15047854 ATATATATAT
* *
15047864 ATATAAAATATTTACAATAATGATGTAAATAAACAAC
1 ATATAAAATATTTACAATAATCATATAAATAAACAAC
15047901 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ACAATAATCATATAAAT-AAACA
15047936 TTTAAAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.29
Consensus pattern (37 bp):
ATATAAAATATTTACAATAATCATATAAATAAACAAC
Found at i:15052427 original size:21 final size:21
Alignment explanation
Indices: 15052401--15052451 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
15052391 CTACAACTTA
*
15052401 AAGCAGATGCGGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
* *
15052422 AAGCAGAGGCTGTAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
15052443 AAGCAGAGG
1 AAGCAGAGG
15052452 TTCAAAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.16, G:0.43, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:15052891 original size:42 final size:42
Alignment explanation
Indices: 15052831--15052934 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
15052821 CGTTTTTGTA
15052831 AAAAAGCGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAAGG
1 AAAAA-CGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAAGG
* *
15052874 AAAAATGCCGCTAAAGAACATGATCTTTAGCGGCGCTTAAGG
1 AAAAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAAGG
*
15052916 AAAAACGCAGCTAAAGAAC
1 AAAAACGCCGCTAAAGAAC
15052935 GAAAAACGCC
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 52 0.91
43 5 0.09
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.17
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAAGG
Found at i:15052940 original size:20 final size:20
Alignment explanation
Indices: 15052915--15052952 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
15052905 GGCGCTTAAG
15052915 GAAAAACGCAGCTAAAGAAC
1 GAAAAACGCAGCTAAAGAAC
*
15052935 GAAAAACGCCGCTAAAGA
1 GAAAAACGCAGCTAAAGA
15052953 TCATGTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.21, G:0.21, T:0.05
Consensus pattern (20 bp):
GAAAAACGCAGCTAAAGAAC
Found at i:15055271 original size:18 final size:18
Alignment explanation
Indices: 15055221--15055262 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
15055211 ATTTATATTC
*
15055221 TCTCTAAACTCTC--AAT
1 TCTCTCAACTCTCTTAAT
*
15055237 TCTTTCAACTCTCTTAAT
1 TCTCTCAACTCTCTTAAT
15055255 TCTCTCAA
1 TCTCTCAA
15055263 TTTTCTTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 11 0.52
18 10 0.48
ACGTcount: A:0.26, C:0.31, G:0.00, T:0.43
Consensus pattern (18 bp):
TCTCTCAACTCTCTTAAT
Found at i:15057432 original size:24 final size:23
Alignment explanation
Indices: 15057402--15057456 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
15057392 AATAGAGACA
* *
15057402 AAGATGAAGCCGAAGGTGGAGATG
1 AAGATGAAACC-AAGGTGGAAATG
*
15057426 AATATGAAAACCAAGGTGGAAATG
1 AAGATG-AAACCAAGGTGGAAATG
15057450 AAGATGA
1 AAGATGA
15057457 GTACGAGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.04
24 21 0.81
25 4 0.15
ACGTcount: A:0.45, C:0.07, G:0.33, T:0.15
Consensus pattern (23 bp):
AAGATGAAACCAAGGTGGAAATG
Done.