Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 63 of 214
Found at i:17975653 original size:20 final size:19
Alignment explanation
Indices: 17975625--17975662 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
17975615 AATATTTCTC
17975625 CTAAATTTTAATTTTATTAT
1 CTAAATTTTAA-TTTATTAT
*
17975645 CTAATTTTTAATTTATTA
1 CTAAATTTTAATTTATTA
17975663 AATTATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
CTAAATTTTAATTTATTAT
Found at i:17986450 original size:142 final size:143
Alignment explanation
Indices: 17986192--17986457 Score: 392
Period size: 142 Copynumber: 1.9 Consensus size: 143
17986182 GTCAAAACCT
* * *
17986192 ACCTCACTTGGCTATCCGTAATTGTTGGTGCAAGTCACGTGCCATGGAAAAACTATTTAGGGGTC
1 ACCTCACTTGGCTATCCGTAATTATTGGTGCAAGTCACGTGCCATGG-AAAACTATCTAAGGGTC
*
17986257 TACTTCCATAAGTCCGCAAGTAAGAATCTACAAGGATTACCTCTCAAGGAAGTAATTGCGCAGGA
65 TACTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGCGCAGGA
17986322 GTTCACCAAGACCC
130 GTTCACCAAGACCC
* * ** * *
17986336 ACCTCACTTGGTTATCCGT-ATCTATTGGTGCAAGTCATGTGCTGTGG-GAATTATCTAAGGGTC
1 ACCTCACTTGGCTATCCGTAAT-TATTGGTGCAAGTCACGTGCCATGGAAAACTATCTAAGGGTC
* *
17986399 TTCTTCCATAAGTCCGCAAGTAAGAATCCGCAAGGATTACCTCTCAAGGAAGTAATTGC
65 TACTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGC
17986458 ACAAGACTCC
Statistics
Matches: 109, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
142 68 0.62
143 2 0.02
144 39 0.36
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (143 bp):
ACCTCACTTGGCTATCCGTAATTATTGGTGCAAGTCACGTGCCATGGAAAACTATCTAAGGGTCT
ACTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGCGCAGGAG
TTCACCAAGACCC
Found at i:17991509 original size:141 final size:140
Alignment explanation
Indices: 17991221--17991497 Score: 337
Period size: 141 Copynumber: 2.0 Consensus size: 140
17991211 AACTATTCGT
* *
17991221 CAAGACCTCACTCACTTGGCTATCTATACCTGTTGCTGAAAGTCACGTGCCATGGGAATTATTTA
1 CAAGACCTCACTCACTTAGCTATCTATA-CTGTTGCTGAAAGTCACGTGCCATGGGAATTATCTA
** *
17991286 GGGGTCTTCTTCCATAAATCCGCAAGTAAGAATCTGCAAGGATTACCTCTCAAGGAAGTAATTGT
65 GGGGTCTTCTTCCATAAATCCGCAAGTAAGAATCCCCAAGGATTACCTCTCAAGGAAGTAATTAT
* * *
17991351 GTAGGATTTCA
130 GCAAGATTGCA
* * *
17991362 CTAAGACC-CACCTCACTTAGCTATCCTATA-TGTTGGTGCAAGTCACGTGATC-TGGGAATTAT
1 C-AAGACCTCA-CTCACTTAGCTAT-CTATACTGTTGCTGAAAGTCACGTG-CCATGGGAATTAT
* * * *
17991424 CTAGGGGTCTTCTTCCATAAGT-CGACAAGTAAGAATCCCCAAGGATTACCTTTTAAGTAAGTAA
62 CTAGGGGTCTTCTTCCATAAATCCG-CAAGTAAGAATCCCCAAGGATTACCTCTCAAGGAAGTAA
17991488 TTATGCAAGA
126 TTATGCAAGA
17991498 GTCTGCCAAG
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
140 2 0.02
141 91 0.78
142 19 0.16
143 5 0.04
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (140 bp):
CAAGACCTCACTCACTTAGCTATCTATACTGTTGCTGAAAGTCACGTGCCATGGGAATTATCTAG
GGGTCTTCTTCCATAAATCCGCAAGTAAGAATCCCCAAGGATTACCTCTCAAGGAAGTAATTATG
CAAGATTGCA
Found at i:17997817 original size:38 final size:38
Alignment explanation
Indices: 17997775--17997851 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
17997765 AAATACATTC
17997775 GTCCGGTTGGTAGTCAGAACATAGGCATGTACTCTCAA
1 GTCCGGTTGGTAGTCAGAACATAGGCATGTACTCTCAA
17997813 GTCCGGTTGGTAGTCAGAACATAGGCATGTACTCTCAA
1 GTCCGGTTGGTAGTCAGAACATAGGCATGTACTCTCAA
17997851 G
1 G
17997852 ACGCGGTACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (38 bp):
GTCCGGTTGGTAGTCAGAACATAGGCATGTACTCTCAA
Found at i:17998837 original size:22 final size:22
Alignment explanation
Indices: 17998809--17998852 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
17998799 TCGAGTGACT
17998809 TTACACAAAACTAATGAGAGCA
1 TTACACAAAACTAATGAGAGCA
17998831 TTACACAAAACTAATGAGAGCA
1 TTACACAAAACTAATGAGAGCA
17998853 AGGATGGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.18, G:0.14, T:0.18
Consensus pattern (22 bp):
TTACACAAAACTAATGAGAGCA
Found at i:18014583 original size:13 final size:13
Alignment explanation
Indices: 18014565--18014591 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18014555 CATGGGATAG
18014565 GCCACACGGGCAT
1 GCCACACGGGCAT
18014578 GCCACACGGGCAT
1 GCCACACGGGCAT
18014591 G
1 G
18014592 AGAGTTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.33, T:0.07
Consensus pattern (13 bp):
GCCACACGGGCAT
Found at i:18023184 original size:19 final size:20
Alignment explanation
Indices: 18023152--18023207 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
18023142 AATTTAATTT
*
18023152 TTTTTATAATTTTTTATG-A
1 TTTTTATAAGTTTTTATGAA
* *
18023171 TTTTTATAGGTTTTTAAGAA
1 TTTTTATAAGTTTTTATGAA
* *
18023191 TTTTAATACGTTTTTAT
1 TTTTTATAAGTTTTTAT
18023208 AAAATTCTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.27, C:0.02, G:0.09, T:0.62
Consensus pattern (20 bp):
TTTTTATAAGTTTTTATGAA
Found at i:18023205 original size:21 final size:21
Alignment explanation
Indices: 18023181--18023231 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
18023171 TTTTTATAGG
*
18023181 TTTTTAAGAATT-TTAATACGT
1 TTTTTAA-AATTCTAAATACGT
*
18023202 TTTTATAAAATTCTAAATATGT
1 TTTT-TAAAATTCTAAATACGT
18023224 TTTATTAA
1 TTT-TTAA
18023232 TTTTATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 8 0.32
22 16 0.64
23 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (21 bp):
TTTTTAAAATTCTAAATACGT
Found at i:18023337 original size:14 final size:15
Alignment explanation
Indices: 18023320--18023349 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
18023310 AATTTCAATA
18023320 TATTTTTAATA-TTT
1 TATTTTTAATACTTT
18023334 TATTTTTAATACTTT
1 TATTTTTAATACTTT
18023349 T
1 T
18023350 TATAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTTTAATACTTT
Found at i:18023358 original size:9 final size:9
Alignment explanation
Indices: 18023266--18023399 Score: 55
Period size: 9 Copynumber: 14.9 Consensus size: 9
18023256 AGAATCTTTT
18023266 ATTTTTATA
1 ATTTTTATA
*
18023275 ATATTTATA
1 ATTTTTATA
**
18023284 GGTTTTAT-
1 ATTTTTATA
18023292 -TTTTTATA
1 ATTTTTATA
*
18023300 AGTTTATATA
1 A-TTTTTATA
* *
18023310 AATTTCA-A
1 ATTTTTATA
18023318 TATATTTT-TA
1 -AT-TTTTATA
18023328 ATATTTTAT-
1 AT-TTTTATA
*
18023337 -TTTTAATA
1 ATTTTTATA
*
18023345 CTTTTTATA
1 ATTTTTATA
* *
18023354 ATTTTTCTG
1 ATTTTTATA
18023363 ATTTGTTATA
1 ATTT-TTATA
* *
18023373 ATTTTTCTT
1 ATTTTTATA
*
18023382 ATTTTTAATT
1 ATTTTT-ATA
18023392 ATTTTTAT
1 ATTTTTAT
18023400 GAAAAATATT
Statistics
Matches: 93, Mismatches: 21, Indels: 22
0.68 0.15 0.16
Matches are distributed among these distances:
7 11 0.12
8 2 0.02
9 52 0.56
10 28 0.30
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (9 bp):
ATTTTTATA
Found at i:18023397 original size:19 final size:19
Alignment explanation
Indices: 18023349--18023385 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
18023339 TTAATACTTT
18023349 TTATAATTTTTCTGATTTG
1 TTATAATTTTTCTGATTTG
*
18023368 TTATAATTTTTCTTATTT
1 TTATAATTTTTCTGATTT
18023386 TTAATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (19 bp):
TTATAATTTTTCTGATTTG
Found at i:18027917 original size:101 final size:100
Alignment explanation
Indices: 18027806--18028048 Score: 303
Period size: 101 Copynumber: 2.4 Consensus size: 100
18027796 TGATGGTCAT
* *
18027806 GTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAT-GTC-TCATGTGTAGTACTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGAAATGGTCAT-ATGTGTAGTACTA
* * *
18027869 TATGCAGGCTACTATGCGTACCGGATAGCTTCGATCAC
64 TATGCAGGCTACTACGCGAACCGGAAAG-TTCGATCAC
* *
18027907 GTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAT-TAATGGTCATATGTGTAGTACTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GA-ATGAAATGGTCATATGTGTAGTACTA
* * * *
18027971 TGTGCAGGCTACTACGTGAACTGGAAAGTTTGATCAC
64 TATGCAGGCTACTACGCGAACCGGAAAGTTCGATCAC
* *
18028008 ATGTGTAATACTATGTGAAGGCTACTACGTGTATCGAATGA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA
18028049 TAATAGTTAA
Statistics
Matches: 123, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
99 2 0.02
100 2 0.02
101 78 0.63
102 40 0.33
103 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (100 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGAAATGGTCATATGTGTAGTACTATA
TGCAGGCTACTACGCGAACCGGAAAGTTCGATCAC
Found at i:18027926 original size:51 final size:50
Alignment explanation
Indices: 18027807--18028040 Score: 231
Period size: 51 Copynumber: 4.6 Consensus size: 50
18027797 GATGGTCATG
* ** *
18027807 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAT-G-TCTCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-AT-AGTTCGATCACA
* * * *
18027857 TGTGTAGTACTATATGCAGGCTACTATGCGTACCGGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTCGATCACA
* * * * *
18027908 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATA-TTAATGGTCATA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTT--CGATCACA
* * * *
18027959 TGTGTAGTACTATGTGCAGGCTACTACGTGAACTGGAAAGTTTGATCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTCGATCACA
* *
18028009 TGTGTAATACTATGTGAAGGCTACTACGTGTA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTA
18028041 TCGAATGATA
Statistics
Matches: 151, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
48 1 0.01
49 5 0.03
50 68 0.45
51 75 0.50
52 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTCGATCACA
Found at i:18028076 original size:101 final size:101
Alignment explanation
Indices: 18027807--18028077 Score: 291
Period size: 101 Copynumber: 2.7 Consensus size: 101
18027797 GATGGTCATG
* * *
18027807 TGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGA-AATGTCT-CATGTGTAGTACTAT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGT-TAAATGTGTAGTACTAT
* * * * *
18027870 ATGCAGGCTACTATGCGTACCGGATAGCTTCGATCACG
64 GTGCAGGCTACTACGCGAACCGGAAAGCTTCGATCACA
* * *
18027908 TGTGTAGTACTATGTGCAGGCTACTACGTGTATC-AGAT-ATTAATGGTCATATGTGTAGTACTA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA-ATGA-TAAT-GTTAAATGTGTAGTACTA
* * *
18027971 TGTGCAGGCTACTACGTGAACTGGAAAG-TTTGATCACA
63 TGTGCAGGCTACTACGCGAACCGGAAAGCTTCGATCACA
* * * *
18028009 TGTGTAATACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTAATATG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAAT-GTTAAATGTGTAGTACTATG
18028074 TGCA
65 TGCA
18028078 AACCACCGAA
Statistics
Matches: 143, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
99 2 0.01
100 2 0.01
101 100 0.70
102 39 0.27
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (101 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGTTAAATGTGTAGTACTATGT
GCAGGCTACTACGCGAACCGGAAAGCTTCGATCACA
Found at i:18036623 original size:13 final size:13
Alignment explanation
Indices: 18036584--18036625 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
18036574 TCATAAGAGC
18036584 TAACACATCATA-
1 TAACACATCATAT
*
18036596 TATCACATGTCATAT
1 TAACACA--TCATAT
18036611 TAACACATCATAT
1 TAACACATCATAT
18036624 TA
1 TA
18036626 CTTAATCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 6 0.24
13 8 0.32
14 5 0.20
15 6 0.24
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.33
Consensus pattern (13 bp):
TAACACATCATAT
Found at i:18046380 original size:31 final size:31
Alignment explanation
Indices: 18046342--18046404 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 31
18046332 GAGCACAAAG
18046342 CAATGTGGGCAATTAAG-CAAGTGAACATGGA
1 CAATGTGGGCAATTAAGCCAA-TGAACATGGA
18046373 CAATGTGGGCAATTAAGCCAATGAACATGGA
1 CAATGTGGGCAATTAAGCCAATGAACATGGA
18046404 C
1 C
18046405 TATGAAGCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 28 0.90
32 3 0.10
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (31 bp):
CAATGTGGGCAATTAAGCCAATGAACATGGA
Found at i:18049094 original size:17 final size:17
Alignment explanation
Indices: 18049072--18049104 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
18049062 GTTAGTGCAC
*
18049072 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
18049089 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
18049105 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:18052228 original size:61 final size:61
Alignment explanation
Indices: 18052140--18052254 Score: 158
Period size: 61 Copynumber: 1.9 Consensus size: 61
18052130 AATTAATCAC
* * *
18052140 ATTAATATTACATGAATAAAATATTATCAAGATAAATATTAATTTAAATTTAATTCCTCAT
1 ATTAATATTAAATGAATAAAATATTATCAAGATAAATATTAAATTAAAATTAATTCCTCAT
* * * * *
18052201 ATTAATATTAAATTAATACAATGTTATCTAGGTAAATATTAAATTAAAATTAAT
1 ATTAATATTAAATGAATAAAATATTATCAAGATAAATATTAAATTAAAATTAAT
18052255 ATAATACTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (61 bp):
ATTAATATTAAATGAATAAAATATTATCAAGATAAATATTAAATTAAAATTAATTCCTCAT
Found at i:18052240 original size:37 final size:36
Alignment explanation
Indices: 18052199--18052292 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 36
18052189 TTAATTCCTC
** * *
18052199 ATATTAATATTAAATTAATACAATGTTATCTAGGTAA
1 ATATTAA-ATTAAATTAATACAATACTATATAGATAA
*
18052236 ATATTAAATTAAAATTAATATAATACTATATAGATAA
1 ATATTAAATT-AAATTAATACAATACTATATAGATAA
*
18052273 ATATGAAATTAAATTTAATA
1 ATATTAAATTAAA-TTAATA
18052293 TTAAATTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
36 6 0.12
37 43 0.88
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.39
Consensus pattern (36 bp):
ATATTAAATTAAATTAATACAATACTATATAGATAA
Found at i:18071370 original size:30 final size:30
Alignment explanation
Indices: 18071334--18071394 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
18071324 TCAATTGATA
*
18071334 ATTAGCTATGGATTAAAACAAACATGCAAC
1 ATTAGCTATGAATTAAAACAAACATGCAAC
18071364 ATTAGCTATGAATTAAAACAAACATGCAAC
1 ATTAGCTATGAATTAAAACAAACATGCAAC
18071394 A
1 A
18071395 ATCTTGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.49, C:0.16, G:0.11, T:0.23
Consensus pattern (30 bp):
ATTAGCTATGAATTAAAACAAACATGCAAC
Found at i:18079237 original size:40 final size:40
Alignment explanation
Indices: 18079190--18079268 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
18079180 TTATTAAAGC
18079190 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
1 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
18079230 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAAT
1 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAAT
18079269 AAACTATTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.48
Consensus pattern (40 bp):
AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
Found at i:18082479 original size:45 final size:45
Alignment explanation
Indices: 18082411--18082504 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
18082401 AACAGATACT
* *
18082411 CGGTGGATTCAGCACATAACAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTC
* *
18082456 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTC
18082501 CGGT
1 CGGT
18082505 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTC
Found at i:18082564 original size:51 final size:50
Alignment explanation
Indices: 18082506--18082696 Score: 224
Period size: 51 Copynumber: 3.8 Consensus size: 50
18082496 ATGTTCGGTT
* *
18082506 CACATAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATCC-GATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCAG-TA
* * *
18082557 CACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCAGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCCAGTA
* * * * *
18082608 CGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCTAGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCCAGTA
* *
18082658 TACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAT
18082697 CACTTTCACT
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
49 2 0.02
50 39 0.33
51 74 0.63
52 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCAGTA
Found at i:18082690 original size:101 final size:101
Alignment explanation
Indices: 18082508--18082692 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
18082498 GTTCGGTTCA
* *
18082508 CATAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATCCGATACACATAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACATAGTAGCCTGCA
18082573 CATAGTACTACACACGTGATCGAAACTATCCAGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCAGTACG
* * * * *
18082610 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCTAGTATACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGA-TACACATAGTAGCCTGCA
18082674 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
18082693 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 7 0.09
101 35 0.47
102 33 0.44
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCAGTACG
Found at i:18099091 original size:27 final size:27
Alignment explanation
Indices: 18099035--18099238 Score: 277
Period size: 27 Copynumber: 7.6 Consensus size: 27
18099025 ACCCTCAAAC
* *
18099035 TGTTATAAAATTACTATTACG-CCCTCA
1 TGTTATAAAATGACTATTATGCCCCT-A
**
18099062 TGTGGTAAAATGACTATTATGCCCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
** *
18099089 TGTTATAAAATGACGGTTATGCCCTTA
1 TGTTATAAAATGACTATTATGCCCCTA
*
18099116 TGTTATAAAATGA-TGGTTATGCCCCTA
1 TGTTATAAAATGACT-ATTATGCCCCTA
* *
18099143 TGTTATAAAATGACAATTATGCTCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
18099170 TGTTATAAAATGACTATTATGCCCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
*
18099197 TATTATAAAATGACTATTATGCCCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
18099224 TGTTATAAAATGACT
1 TGTTATAAAATGACT
18099239 GTATGCTTAA
Statistics
Matches: 156, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 152 0.97
28 4 0.03
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (27 bp):
TGTTATAAAATGACTATTATGCCCCTA
Found at i:18102341 original size:37 final size:37
Alignment explanation
Indices: 18102291--18102369 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
18102281 TTATTACGAA
* * *
18102291 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
18102328 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
18102365 GTCTT
1 GTCTT
18102370 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:18102562 original size:49 final size:49
Alignment explanation
Indices: 18102488--18102851 Score: 546
Period size: 49 Copynumber: 7.6 Consensus size: 49
18102478 CCCTTCGGGA
* * * * *
18102488 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
18102535 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18102584 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18102631 CCTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18102678 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18102727 CCTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18102776 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18102823 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
18102852 TATTCAAATA
Statistics
Matches: 290, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 142 0.49
48 1 0.00
49 147 0.51
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18102692 original size:96 final size:95
Alignment explanation
Indices: 18102488--18102851 Score: 559
Period size: 96 Copynumber: 3.8 Consensus size: 95
18102478 CCCTTCGGGA
* * * * * * *
18102488 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
*
18102553 ACTTCCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
18102584 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC-GTATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACA
18102648 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
18102678 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATAT
*
18102743 ACACTTTCACATTCATCACATCGGCTATTAGGC
63 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
18102776 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
18102841 ACTTTCACATT
65 ACTTTCACATT
18102852 TATTCAAATA
Statistics
Matches: 250, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
94 45 0.18
96 160 0.64
98 45 0.18
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18104556 original size:13 final size:13
Alignment explanation
Indices: 18104538--18104562 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18104528 TACTAAATTT
18104538 TCATGGATTCAAG
1 TCATGGATTCAAG
18104551 TCATGGATTCAA
1 TCATGGATTCAA
18104563 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:18107151 original size:21 final size:21
Alignment explanation
Indices: 18107112--18107152 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
18107102 AAGTTAATCA
* * *
18107112 AAAGAATAATAACATATAATG
1 AAAGAAGAATAAAAAATAATG
18107133 AAAGAAGAATAAAAAATAAT
1 AAAGAAGAATAAAAAATAAT
18107153 AGTTAGATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (21 bp):
AAAGAAGAATAAAAAATAATG
Found at i:18108784 original size:61 final size:59
Alignment explanation
Indices: 18108715--18108859 Score: 175
Period size: 60 Copynumber: 2.4 Consensus size: 59
18108705 TTTTTGAAAA
*
18108715 TTTTAGAATTAGAACCAAATTGATAAATTTTTGTAAATATTGAGGG-TAAATTTATTGAATT
1 TTTTAGAATTAG-ACCAAATTGATAAA-TTTTGTAAACATTGAGGGCTAAATTTATTG-ATT
* * * *
18108776 TTTTAGAATTTAGACTAAAATGACAAATTTTGTAAACATTGAGGGCTAAATTTGTTGATT
1 TTTTAGAA-TTAGACCAAATTGATAAATTTTGTAAACATTGAGGGCTAAATTTATTGATT
* *
18108836 TTTTAGATTTAGGATCAAATTGAT
1 TTTTAGAATTA-GACCAAATTGAT
18108860 TGAATGTGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
59 3 0.04
60 35 0.49
61 29 0.41
62 4 0.06
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (59 bp):
TTTTAGAATTAGACCAAATTGATAAATTTTGTAAACATTGAGGGCTAAATTTATTGATT
Found at i:18108837 original size:60 final size:62
Alignment explanation
Indices: 18108715--18108847 Score: 177
Period size: 61 Copynumber: 2.2 Consensus size: 62
18108705 TTTTTGAAAA
* * *
18108715 TTTTAGAA-TTAGAACCAAATTGATAAATTTTTGTAAATATTGAGGGTAAATTTATTGAATT
1 TTTTAGAATTTAGAACCAAAATGACAAATTTTTGTAAACATTGAGGGTAAATTTATTGAATT
* *
18108776 TTTTAGAATTTAG-ACTAAAATGACAAA-TTTTGTAAACATTGAGGGCTAAATTTGTTG-ATT
1 TTTTAGAATTTAGAACCAAAATGACAAATTTTTGTAAACATTGAGGG-TAAATTTATTGAATT
18108836 TTTTAG-ATTTAG
1 TTTTAGAATTTAG
18108848 GATCAAATTG
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
59 6 0.09
60 26 0.40
61 29 0.45
62 4 0.06
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.43
Consensus pattern (62 bp):
TTTTAGAATTTAGAACCAAAATGACAAATTTTTGTAAACATTGAGGGTAAATTTATTGAATT
Found at i:18114849 original size:27 final size:27
Alignment explanation
Indices: 18114818--18114923 Score: 153
Period size: 27 Copynumber: 3.9 Consensus size: 27
18114808 TATATGACTG
*
18114818 AAATATCCCC-ATAGGGTAAAATGATCA
1 AAATA-CCCCTATAGGGTAAAATGACCA
18114845 AAATA-CCCTCATAGGGTAAAATGACCA
1 AAATACCCCT-ATAGGGTAAAATGACCA
*
18114872 AAATACCCCTATAGGGTAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGACCA
*
18114899 AAATACCCCTATAGGATAAAATGAC
1 AAATACCCCTATAGGGTAAAATGAC
18114924 TATTATACCC
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.04
27 66 0.90
28 4 0.05
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.20
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAAAATGACCA
Found at i:18123642 original size:26 final size:26
Alignment explanation
Indices: 18123578--18123676 Score: 83
Period size: 26 Copynumber: 3.8 Consensus size: 26
18123568 TCATTCCTAT
* * *
18123578 TTTACCCC-AACAAAATTTTGACAAT
1 TTTACCCCTAATAAAATTTTGACGAC
** * *
18123603 TTTACCTTTGATAAAATTTTGACGAT
1 TTTACCCCTAATAAAATTTTGACGAC
** * *
18123629 TTTGTCCCTAATAAAAGTTTGATGAC
1 TTTACCCCTAATAAAATTTTGACGAC
*
18123655 TTTACCCCTATTAAAATTTTGA
1 TTTACCCCTAATAAAATTTTGA
18123677 GAAAATATGT
Statistics
Matches: 56, Mismatches: 17, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
25 6 0.11
26 50 0.89
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.40
Consensus pattern (26 bp):
TTTACCCCTAATAAAATTTTGACGAC
Found at i:18123839 original size:12 final size:12
Alignment explanation
Indices: 18123822--18123851 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18123812 TGCAAATGGA
18123822 TCATTTCCATTT
1 TCATTTCCATTT
18123834 TCATTTCCATTT
1 TCATTTCCATTT
*
18123846 CCATTT
1 TCATTT
18123852 TCTGGAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.57
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:18125949 original size:26 final size:24
Alignment explanation
Indices: 18125910--18125962 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 24
18125900 GGGATAATAA
18125910 TTTTTAATTAATATTCAACTGATT
1 TTTTTAATTAATATTCAACTGATT
18125934 TTTTTAAAGTTAATATTCAACTGATT
1 TTTTT-AA-TTAATATTCAACTGATT
18125960 TTT
1 TTT
18125963 AAAACAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 5 0.19
25 2 0.07
26 20 0.74
ACGTcount: A:0.32, C:0.08, G:0.06, T:0.55
Consensus pattern (24 bp):
TTTTTAATTAATATTCAACTGATT
Found at i:18125972 original size:24 final size:25
Alignment explanation
Indices: 18125919--18125972 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
18125909 ATTTTTAATT
***
18125919 AATATTCAACTGATTTTTTTAAAGTT
1 AATATTCAACTGA-TTTTTTAAAACA
18125945 AATATTCAACTGA-TTTTTAAAACA
1 AATATTCAACTGATTTTTTAAAACA
18125969 AATA
1 AATA
18125973 AGTATCCACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 12 0.48
26 13 0.52
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (25 bp):
AATATTCAACTGATTTTTTAAAACA
Found at i:18126639 original size:13 final size:14
Alignment explanation
Indices: 18126621--18126650 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
18126611 CTTTAACCAT
18126621 TGTCAAAA-TCAAA
1 TGTCAAAATTCAAA
18126634 TGTCAAAATTCAAA
1 TGTCAAAATTCAAA
18126648 TGT
1 TGT
18126651 TGTGACACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (14 bp):
TGTCAAAATTCAAA
Found at i:18137845 original size:25 final size:25
Alignment explanation
Indices: 18137814--18138005 Score: 114
Period size: 25 Copynumber: 7.9 Consensus size: 25
18137804 GTCCTATCTC
18137814 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGT
* * * **
18137839 GAGCCATGTAATGGGAAGCTTATCC
1 GAGCCATATAACGGGAAGCTCATGT
* * **
18137864 GAGCTATATAACGGGAAGCCCATAA
1 GAGCCATATAACGGGAAGCTCATGT
18137889 GAGCC-TA-ATA-GGGAAGCTCATGT
1 GAGCCATATA-ACGGGAAGCTCATGT
* * *
18137912 GAGCC-TATAACGGGTAGCTC-CGAA
1 GAGCCATATAACGGGAAGCTCATG-T
**
18137936 GAGCCA-ATAACCAGAAGCTC-TGAAT
1 GAGCCATATAACGGGAAGCTCATG--T
* * * *
18137961 -AGCCATATATCGGGAAGTTCAAGC
1 GAGCCATATAACGGGAAGCTCATGT
*
18137985 GAGCCA-ATATCGGGAAGCTCA
1 GAGCCATATAACGGGAAGCTCA
18138006 CAAAGAGCCT
Statistics
Matches: 127, Mismatches: 31, Indels: 19
0.72 0.18 0.11
Matches are distributed among these distances:
23 20 0.16
24 48 0.38
25 58 0.46
26 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATGT
Found at i:18140399 original size:43 final size:43
Alignment explanation
Indices: 18140346--18140434 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
18140336 GTTTTATAGG
* * *
18140346 TAGTGGCATTTTT-GGTAGAAGTGTCACTAAATGCCATGTTCTT
1 TAGTGGCATTTTTAAG-AGAAGTGCCACTAAAGGCCATGTTCTT
* *
18140389 TAGTGGCATTTTTAAGAGAAGTGCCACTAAAGGTCATGTTTTT
1 TAGTGGCATTTTTAAGAGAAGTGCCACTAAAGGCCATGTTCTT
18140432 TAG
1 TAG
18140435 CGGCGTTTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 39 0.98
44 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (43 bp):
TAGTGGCATTTTTAAGAGAAGTGCCACTAAAGGCCATGTTCTT
Found at i:18140857 original size:66 final size:66
Alignment explanation
Indices: 18140730--18140857 Score: 177
Period size: 66 Copynumber: 1.9 Consensus size: 66
18140720 TCTAAAGCTA
* * * *
18140730 TAGCTGGAGTTCGTCATATTTTCTTGTTGCCTCTGCTTCTCTCGCTGCGGCCTCCGCTTTAATTT
1 TAGCTGGAGTTCATCATATTTTCTTGTAGCCTCTGCTTCTCTCGATGCGGCCTCCACTTTAATTT
18140795 G
66 G
* * *
18140796 TAGCTGGAGTTCATCATATTTTCTT-TGAGCCTCTGCTTCTCTCGATGCTGCCTTCATTTTAA
1 TAGCTGGAGTTCATCATATTTTCTTGT-AGCCTCTGCTTCTCTCGATGCGGCCTCCACTTTAA
18140858 GCTGAGCAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 1 0.02
66 53 0.98
ACGTcount: A:0.12, C:0.26, G:0.19, T:0.43
Consensus pattern (66 bp):
TAGCTGGAGTTCATCATATTTTCTTGTAGCCTCTGCTTCTCTCGATGCGGCCTCCACTTTAATTT
G
Found at i:18153899 original size:79 final size:81
Alignment explanation
Indices: 18153788--18153972 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
18153778 GCTCCTCGTT
* *
18153788 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
18153852 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* * **
18153868 CAAATGCCTTCGGG-CTTAGCCTGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
18153931 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
18153948 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18153973 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 4 0.04
79 54 0.60
80 32 0.36
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:18153972 original size:40 final size:40
Alignment explanation
Indices: 18153788--18153972 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
18153778 GCTCCTCGTT
* *
18153788 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
18153828 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
18153868 CAAATGCCTTCGGG-CTTAGCCTGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
18153907 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
18153948 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18153973 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:18161945 original size:40 final size:40
Alignment explanation
Indices: 18161761--18161945 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
18161751 GCTCCTCGTT
* *
18161761 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
18161801 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
18161841 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * **
18161880 CAAATGCCCTC-GGATCTTAGTCCGGATATGGTCACTTAACA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
18161921 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18161946 CATCATTCAA
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 78 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:18169611 original size:10 final size:10
Alignment explanation
Indices: 18169596--18169620 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
18169586 TTTATAATGA
18169596 ATTTTGATTT
1 ATTTTGATTT
18169606 ATTTTGATTT
1 ATTTTGATTT
18169616 ATTTT
1 ATTTT
18169621 CGATAGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
ATTTTGATTT
Found at i:18172905 original size:30 final size:30
Alignment explanation
Indices: 18172870--18172938 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
18172860 GCTACAAAGG
18172870 ACACACGGCCGTGTAACCTAGCCATGTGTC
1 ACACACGGCCGTGTAACCTAGCCATGTGTC
* *
18172900 ACACACCGCCGTGTCACCTAGCCATGTGTC
1 ACACACGGCCGTGTAACCTAGCCATGTGTC
18172930 ACACACGGC
1 ACACACGGC
18172939 TAAGACACAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.23, C:0.38, G:0.22, T:0.17
Consensus pattern (30 bp):
ACACACGGCCGTGTAACCTAGCCATGTGTC
Found at i:18174106 original size:25 final size:25
Alignment explanation
Indices: 18174069--18174182 Score: 99
Period size: 25 Copynumber: 4.6 Consensus size: 25
18174059 GTACATGTAT
* * * *
18174069 GCTCACACAAGCTGTGAATCGGTAT
1 GCTCTCACGAGCTGTAAATCGGTAA
18174094 GCTCTCACGAGCTGTAAATCGGTAA
1 GCTCTCACGAGCTGTAAATCGGTAA
* * *
18174119 GCTCAT-ACAAACTG-AGAATCAGTAA
1 GCTC-TCACGAGCTGTA-AATCGGTAA
* *
18174144 GCTCTCACGAGTTGCAAATCGGTAA
1 GCTCTCACGAGCTGTAAATCGGTAA
18174169 GCTCAT-ACGAGCTG
1 GCTC-TCACGAGCTG
18174183 CGATGTGTCC
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
24 2 0.03
25 67 0.93
26 3 0.04
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (25 bp):
GCTCTCACGAGCTGTAAATCGGTAA
Found at i:18174148 original size:50 final size:50
Alignment explanation
Indices: 18174069--18174176 Score: 153
Period size: 50 Copynumber: 2.2 Consensus size: 50
18174059 GTACATGTAT
* * * * * *
18174069 GCTCACACAAGCTGTGAATCGGTATGCTCTCACGAGCTGTAAATCGGTAA
1 GCTCATACAAACTGAGAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAA
*
18174119 GCTCATACAAACTGAGAATCAGTAAGCTCTCACGAGTTGCAAATCGGTAA
1 GCTCATACAAACTGAGAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAA
18174169 GCTCATAC
1 GCTCATAC
18174177 GAGCTGCGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (50 bp):
GCTCATACAAACTGAGAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAA
Found at i:18174351 original size:25 final size:25
Alignment explanation
Indices: 18174320--18174432 Score: 115
Period size: 25 Copynumber: 4.5 Consensus size: 25
18174310 TTAGTATACC
*
18174320 CATACGAGCTATGAATCGGTATGCT
1 CATACGAGCTATGAATCGGTAAGCT
* *
18174345 C-TCACGAGCTATAAATCAGTAAGCT
1 CAT-ACGAGCTATGAATCGGTAAGCT
*
18174370 CATACGAGCTGA-GAATTGGTAAGCT
1 CATACGAGCT-ATGAATCGGTAAGCT
***
18174395 C-TCACGAGCTGCAAATCGGTAAGCT
1 CAT-ACGAGCTATGAATCGGTAAGCT
18174420 CATACGAGCTATG
1 CATACGAGCTATG
18174433 GTGTGTCCGT
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
24 2 0.03
25 65 0.93
26 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (25 bp):
CATACGAGCTATGAATCGGTAAGCT
Found at i:18174396 original size:50 final size:50
Alignment explanation
Indices: 18174320--18174432 Score: 165
Period size: 50 Copynumber: 2.3 Consensus size: 50
18174310 TTAGTATACC
* *
18174320 CATACGAGCTATGAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCT
1 CATACGAGCTATGAATCGGTAAGCTCTCACGAGCTACAAATCAGTAAGCT
* * *
18174370 CATACGAGCTGA-GAATTGGTAAGCTCTCACGAGCTGCAAATCGGTAAGCT
1 CATACGAGCT-ATGAATCGGTAAGCTCTCACGAGCTACAAATCAGTAAGCT
18174420 CATACGAGCTATG
1 CATACGAGCTATG
18174433 GTGTGTCCGT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
49 1 0.02
50 54 0.96
51 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (50 bp):
CATACGAGCTATGAATCGGTAAGCTCTCACGAGCTACAAATCAGTAAGCT
Found at i:18174529 original size:248 final size:248
Alignment explanation
Indices: 18174078--18174558 Score: 768
Period size: 248 Copynumber: 1.9 Consensus size: 248
18174068 TGCTCACACA
* * *
18174078 AGCTGTGAATCGGTATGCTCTCACGAGCTGTAAATCGGTAAGCTCATACAAACTGAGAATCAGTA
1 AGCTATGAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCTCATACAAACTGAGAATCAGTA
* *
18174143 AGCTCTCACGAGTTGCAAATCGGTAAGCTCATACGAGCTGCGATGTGTCCGTAACACATGCAGGA
66 AGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCTACGATGTGTCCGTAACACATGCAGGA
* * *
18174208 CCTCAATCAAATCAGTAACCCTAATGACATGTCATTTCTATCCTATGAATTCTTAAGGTTCAAAT
131 CCTCAACCAAATCAGTAACCCTAATGACATGTCATTTCTATCCTATAAATTCCTAAGGTTCAAAT
* *
18174273 GAGGCTCGATAATC-ATCGTACGTCATCGGATATGCAATTAGTATACCCATACG
196 CAGGCTCGATAATCGA-CGTACGTCATCGAATATGCAATTAGTATACCCATACG
* * **
18174326 AGCTATGAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCTCATACGAGCTGAGAATTGGTA
1 AGCTATGAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCTCATACAAACTGAGAATCAGTA
* *
18174391 AGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCTATGGTGTGTCCGTAACACATGCAGGA
66 AGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCTACGATGTGTCCGTAACACATGCAGGA
* *
18174456 CCTCAACCAAATCGGTAACCCTAATGACATGTCATTTGTATCCTATAAATTCCTAAGGTTCAAA-
131 CCTCAACCAAATCAGTAACCCTAATGACATGTCATTTCTATCCTATAAATTCCTAAGGTTCAAAT
18174520 CATGGCTCGATAATCGACGTACGTCATCGAATATGCAAT
196 CA-GGCTCGATAATCGACGTACGTCATCGAATATGCAAT
18174559 CCATTTTATA
Statistics
Matches: 213, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
247 1 0.00
248 211 0.99
249 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (248 bp):
AGCTATGAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCTCATACAAACTGAGAATCAGTA
AGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCTACGATGTGTCCGTAACACATGCAGGA
CCTCAACCAAATCAGTAACCCTAATGACATGTCATTTCTATCCTATAAATTCCTAAGGTTCAAAT
CAGGCTCGATAATCGACGTACGTCATCGAATATGCAATTAGTATACCCATACG
Found at i:18188001 original size:50 final size:49
Alignment explanation
Indices: 18187877--18188118 Score: 225
Period size: 50 Copynumber: 4.8 Consensus size: 49
18187867 GATAATAACA
* ** * * *
18187877 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CG
* * **
18187926 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATC-G
* * ** *
18187976 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATC-G
*
18188026 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---G
* *
18188081 ATACCAATGTCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
18188119 TATCTTTACC
Statistics
Matches: 157, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 39 0.25
50 80 0.51
53 2 0.01
55 1 0.01
56 34 0.22
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
Found at i:18190590 original size:10 final size:10
Alignment explanation
Indices: 18190575--18190622 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
18190565 TAACATGTTG
18190575 AATTTTAATT
1 AATTTTAATT
*
18190585 AATTTTCTAATA
1 AA-TTT-TAATT
*
18190597 AATTTTGATT
1 AATTTTAATT
*
18190607 AATTTTGATT
1 AATTTTAATT
18190617 AATTTT
1 AATTTT
18190623 CGACAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 21 0.64
11 6 0.18
12 6 0.18
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (10 bp):
AATTTTAATT
Found at i:18204483 original size:36 final size:34
Alignment explanation
Indices: 18204433--18204520 Score: 124
Period size: 36 Copynumber: 2.6 Consensus size: 34
18204423 TCAATCCAAC
**
18204433 CAAACACAGTAGATGCTCACACGAGCCAATCCCT
1 CAAACACACCAGATGCTCACACGAGCCAATCCCT
18204467 CCAAAACACACCAGATGCTCACACGAGCCAATCCCT
1 -C-AAACACACCAGATGCTCACACGAGCCAATCCCT
*
18204503 CTAACACACCA-ATGCTCA
1 CAAACACACCAGATGCTCA
18204521 TAAGAGCTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
33 7 0.14
34 9 0.18
35 2 0.04
36 31 0.63
ACGTcount: A:0.36, C:0.39, G:0.11, T:0.14
Consensus pattern (34 bp):
CAAACACACCAGATGCTCACACGAGCCAATCCCT
Found at i:18206689 original size:22 final size:21
Alignment explanation
Indices: 18206650--18206690 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
18206640 GTTATTTTAA
* *
18206650 AGTTTAAATTAAATAAAGGCT
1 AGTTTAAAATAAAAAAAGGCT
18206671 AGTTTAATAATAAAAAAAGG
1 AGTTTAA-AATAAAAAAAGG
18206691 TAGGGTCATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.54, C:0.02, G:0.15, T:0.29
Consensus pattern (21 bp):
AGTTTAAAATAAAAAAAGGCT
Found at i:18207660 original size:82 final size:82
Alignment explanation
Indices: 18207516--18207999 Score: 473
Period size: 82 Copynumber: 5.9 Consensus size: 82
18207506 ACTAAGTCCT
* * * *
18207516 GCAGGCTTCATGCC-GTTGTATTATATCAAGCTTTGTGCCTAAC-GAGCTTCGTGTTGGAGTATT
1 GCAGGCTTCATGCCAG-TGTATTATATCAAGCTTTGTGCCTAGCAG-GCTTCGTGCTAGTGTATT
* *
18207579 ATATCAAGCTTTATGCCTA
64 ATATCAGGCTTTGTGCCTA
* * * * *
18207598 GTAGGCTTCGTGCCAATGTATTATATCAGGCTTTGTGCCTAGCAGGATTCGTGCTAGTGTATTAT
1 GCAGGCTTCATGCCAGTGTATTATATCAAGCTTTGTGCCTAGCAGGCTTCGTGCTAGTGTATTAT
*
18207663 ATCAGGCTTTATGCCTA
66 ATCAGGCTTTGTGCCTA
* ** * * *
18207680 CCAGGCTTCATGCTGGTGTATTATATCAAGCTTTGTGCCTAGCAAGCTTCATGC-CGATGTATTA
1 GCAGGCTTCATGCCAGTGTATTATATCAAGCTTTGTGCCTAGCAGGCTTCGTGCTAG-TGTATTA
18207744 TATCAGGCTTTGTGCCTA
65 TATCAGGCTTTGTGCCTA
* * * * * *
18207762 GCAGACTTTATGCTTA-TGTATTATATCAAGATTTATGCCTAGTAGGCTTCAAGT-C-AGTGTA-
1 GCAGGCTTCATGC-CAGTGTATTATATCAAGCTTTGTGCCTAGCAGGCTTC--GTGCTAGTGTAT
*
18207823 T-TATCAGGCTTTGTACCTA
63 TATATCAGGCTTTGTGCCTA
* * ** *
18207842 GCAGGCTTCATGTCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTATGCCAGTGTATTAT
1 GCAGGCTTCATGCCAGTGTATTATATCAAGCTTTGTGCCTAGCAGGCTTCGTGCTAGTGTATTAT
* *
18207907 ATTAAGCTTTGTGCCTA
66 ATCAGGCTTTGTGCCTA
* ** * * * * * *
18207924 GAAGGCTTCATATCTGTGTGTTATATCAGGCTTTGAGCCTAGCAGGCATCGTG-TCAGTGTGTTA
1 GCAGGCTTCATGCCAGTGTATTATATCAAGCTTTGTGCCTAGCAGGCTTCGTGCT-AGTGTATTA
18207988 TATCAGGCTTTG
65 TATCAGGCTTTG
18208000 AGCTTAATAG
Statistics
Matches: 332, Mismatches: 58, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
78 1 0.00
79 2 0.01
80 62 0.19
81 3 0.01
82 259 0.78
83 4 0.01
84 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (82 bp):
GCAGGCTTCATGCCAGTGTATTATATCAAGCTTTGTGCCTAGCAGGCTTCGTGCTAGTGTATTAT
ATCAGGCTTTGTGCCTA
Found at i:18207740 original size:123 final size:123
Alignment explanation
Indices: 18207532--18208026 Score: 520
Period size: 123 Copynumber: 4.0 Consensus size: 123
18207522 TTCATGCCGT
* * * * * *
18207532 TGTATTATATCAAGCTTTGTGCCTAAC-GAGCTTCGTGTTGGAGTATTATATCAAGCTTTATGCC
1 TGTATTATATCAAGCTTTATGCCTAGCAG-GCTTCATGCTGGTGTATTATATCAAGCTTTGTGCC
* * * **
18207596 TAGTAGGCTTCGTGCCAATGTATTATATCAGGCTTTGTGCCTAGCAGGATTCGTGCTAG
65 TAGCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGATTTATGCTAG
* *
18207655 TGTATTATATCAGGCTTTATGCCTACCAGGCTTCATGCTGGTGTATTATATCAAGCTTTGTGCCT
1 TGTATTATATCAAGCTTTATGCCTAGCAGGCTTCATGCTGGTGTATTATATCAAGCTTTGTGCCT
*
18207720 AGCAAGCTTCATGCC-GATGTATTATATCAGGCTTTGTGCCTAGCA-GACTTTATGCTTA-
66 AGCAGGCTTCATGCCAG-TGTATTATATCAGGCTTTGTGCCTAGCAGGA-TTTATGC-TAG
* * * * * *
18207778 TGTATTATATCAAGATTTATGCCTAGTAGGCTTCAAG-TCAGTGTA-T-TATCAGGCTTTGTACC
1 TGTATTATATCAAGCTTTATGCCTAGCAGGCTTCATGCT-GGTGTATTATATCAAGCTTTGTGCC
* * *
18207840 TAGCAGGCTTCATGTCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTATGCCAG
65 TAGCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGATTTATGCTAG
* * * * * * *
18207899 TGTATTATATTAAGCTTTGTGCCTAGAAGGCTTCATATCT-GTGTGTTATATCAGGCTTTGAGCC
1 TGTATTATATCAAGCTTTATGCCTAGCAGGCTTCAT-GCTGGTGTATTATATCAAGCTTTGTGCC
* * * * * * ** * *
18207963 TAGCAGGCATCGTGTCAGTGTGTTATATCAGGCTTTGAGCTTAATAGGCTTTGTGCTAG
65 TAGCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGATTTATGCTAG
18208022 TGTAT
1 TGTAT
18208027 CAGGTAAGTT
Statistics
Matches: 317, Mismatches: 43, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
120 1 0.00
121 98 0.31
122 7 0.02
123 208 0.66
124 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (123 bp):
TGTATTATATCAAGCTTTATGCCTAGCAGGCTTCATGCTGGTGTATTATATCAAGCTTTGTGCCT
AGCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGATTTATGCTAG
Found at i:18208000 original size:41 final size:41
Alignment explanation
Indices: 18207516--18208002 Score: 413
Period size: 41 Copynumber: 11.9 Consensus size: 41
18207506 ACTAAGTCCT
* * *
18207516 GCAGGCTTCATG-CCGTTGTATTATATCAAGCTTTGTGCCTA
1 GCAGGCTTCATGTCAG-TGTATTATATCAGGCTTTGAGCCTA
* * ** * *
18207557 AC-GAGCTTCGTGTTGGAGTATTATATCAAGCTTT-ATGCCTA
1 GCAG-GCTTCATGTCAGTGTATTATATCAGGCTTTGA-GCCTA
* * * * *
18207598 GTAGGCTTCGTGCCAATGTATTATATCAGGCTTTGTGCCTA
1 GCAGGCTTCATGTCAGTGTATTATATCAGGCTTTGAGCCTA
* *
18207639 GCAGGATTCGTG-CTAGTGTATTATATCAGGCTTT-ATGCCTA
1 GCAGGCTTCATGTC-AGTGTATTATATCAGGCTTTGA-GCCTA
* * * *
18207680 CCAGGCTTCATG-CTGGTGTATTATATCAAGCTTTGTGCCTA
1 GCAGGCTTCATGTC-AGTGTATTATATCAGGCTTTGAGCCTA
* * *
18207721 GCAAGCTTCATG-CCGATGTATTATATCAGGCTTTGTGCCTA
1 GCAGGCTTCATGTCAG-TGTATTATATCAGGCTTTGAGCCTA
* * * * *
18207762 GCAGACTTTATGCTTA-TGTATTATATCAAGATTT-ATGCCTA
1 GCAGGCTTCATG-TCAGTGTATTATATCAGGCTTTGA-GCCTA
* *
18207803 GTAGGCTTCAAGTCAGTGTA-T-TATCAGGCTTTGTA-CCTA
1 GCAGGCTTCATGTCAGTGTATTATATCAGGCTTTG-AGCCTA
*
18207842 GCAGGCTTCATGTCAGTGTATTATATCAGGCTTTGTGCCTA
1 GCAGGCTTCATGTCAGTGTATTATATCAGGCTTTGAGCCTA
* * * * *
18207883 GCAGGCTTTATGCCAGTGTATTATATTAAGCTTTGTGCCTA
1 GCAGGCTTCATGTCAGTGTATTATATCAGGCTTTGAGCCTA
* * * *
18207924 GAAGGCTTCATATCTGTGTGTTATATCAGGCTTTGAGCCTA
1 GCAGGCTTCATGTCAGTGTATTATATCAGGCTTTGAGCCTA
* * *
18207965 GCAGGCATCGTGTCAGTGTGTTATATCAGGCTTTGAGC
1 GCAGGCTTCATGTCAGTGTATTATATCAGGCTTTGAGC
18208003 TTAATAGGCT
Statistics
Matches: 363, Mismatches: 65, Indels: 36
0.78 0.14 0.08
Matches are distributed among these distances:
39 31 0.09
40 7 0.02
41 323 0.89
42 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (41 bp):
GCAGGCTTCATGTCAGTGTATTATATCAGGCTTTGAGCCTA
Found at i:18208013 original size:203 final size:203
Alignment explanation
Indices: 18207520--18207992 Score: 526
Period size: 203 Copynumber: 2.3 Consensus size: 203
18207510 AGTCCTGCAG
* * * * * * * *
18207520 GCTTCATGCCGTTGTATTATATCAAGCTTTGTGCCTAAC-GAGCTTCGTGTTGGA-GTATTATAT
1 GCTTCATGCCGATGTATTATATCAGGCTTTGAGCCTAGCAGA-CATCATGCT-CATGTATTATAT
* * ** * * *
18207583 CAAGCTTTATGCCTAGTAGGCTTCGTGCCAATGTATTATATCAGGCTTTGTGCCTAGCAGGATTC
64 CAAGATTTATGCCTAATAGGCTTCAAGTCAGTGTA-T-TATCAGGCTTTGTACCTAGCAGGATTC
* **
18207648 GTGCTAGTGTATTATATCAGGCTTTATGCCTACCAGGCTTCATGCTGGTGTATTATATCAAGCTT
127 ATGCTAGTGTATTATATCAGGCTTTATGCCTACCAGGCTTCATGCCAGTGTATTATATCAAGCTT
18207713 TGTGCCTAGCAA
192 TGTGCCTAGCAA
* * * *
18207725 GCTTCATGCCGATGTATTATATCAGGCTTTGTGCCTAGCAGACTTTATGCTTATGTATTATATCA
1 GCTTCATGCCGATGTATTATATCAGGCTTTGAGCCTAGCAGACATCATGCTCATGTATTATATCA
* *
18207790 AGATTTATGCCTAGTAGGCTTCAAGTCAGTGTATTATCAGGCTTTGTACCTAGCAGGCTTCATG-
66 AGATTTATGCCTAATAGGCTTCAAGTCAGTGTATTATCAGGCTTTGTACCTAGCAGGATTCATGC
* * * *
18207854 TCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTATGCCAGTGTATTATATTAAGCTTTGT
131 T-AGTGTATTATATCAGGCTTTATGCCTACCAGGCTTCATGCCAGTGTATTATATCAAGCTTTGT
18207919 GCCTAG-AA
195 GCCTAGCAA
* * * * * *
18207927 GGCTTCATATCTG-TGTGTTATATCAGGCTTTGAGCCTAGCAGGCATCGTG-TCAGTGTGTTATA
1 -GCTTCAT-GCCGATGTATTATATCAGGCTTTGAGCCTAGCAGACATCATGCTCA-TGTATTATA
18207990 TCA
63 TCA
18207993 GGCTTTGAGC
Statistics
Matches: 231, Mismatches: 31, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
202 5 0.02
203 139 0.60
204 4 0.02
205 81 0.35
206 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (203 bp):
GCTTCATGCCGATGTATTATATCAGGCTTTGAGCCTAGCAGACATCATGCTCATGTATTATATCA
AGATTTATGCCTAATAGGCTTCAAGTCAGTGTATTATCAGGCTTTGTACCTAGCAGGATTCATGC
TAGTGTATTATATCAGGCTTTATGCCTACCAGGCTTCATGCCAGTGTATTATATCAAGCTTTGTG
CCTAGCAA
Found at i:18212281 original size:41 final size:41
Alignment explanation
Indices: 18212236--18212325 Score: 171
Period size: 41 Copynumber: 2.2 Consensus size: 41
18212226 TTTCTGAATT
*
18212236 AATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATAACA
18212277 AATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATAACA
1 AATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATAACA
18212318 AATGAAAA
1 AATGAAAA
18212326 TGATGTATTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (41 bp):
AATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATAACA
Found at i:18223565 original size:17 final size:17
Alignment explanation
Indices: 18223523--18223566 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
18223513 AATTCATAAA
18223523 AATGATGATACATGAAAT
1 AATGAT-ATACATGAAAT
*
18223541 ATTGATATA-ATGAAAT
1 AATGATATACATGAAAT
18223557 GAATGATATA
1 -AATGATATA
18223567 TGTTTATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.30
17 11 0.48
18 5 0.22
ACGTcount: A:0.50, C:0.02, G:0.16, T:0.32
Consensus pattern (17 bp):
AATGATATACATGAAAT
Found at i:18229011 original size:21 final size:22
Alignment explanation
Indices: 18228986--18229041 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 22
18228976 TATATAAAAC
18228986 AATAACATAG-AAATTAAAATA
1 AATAACATAGCAAATTAAAATA
18229007 AATAACATACAAAGCAAATTAAAATA
1 AATAACAT----AGCAAATTAAAATA
18229033 AATAACATA
1 AATAACATA
18229042 AAAGACAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
21 8 0.27
22 1 0.03
25 2 0.07
26 19 0.63
ACGTcount: A:0.66, C:0.09, G:0.04, T:0.21
Consensus pattern (22 bp):
AATAACATAGCAAATTAAAATA
Found at i:18229029 original size:26 final size:26
Alignment explanation
Indices: 18228996--18229059 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
18228986 AATAACATAG
18228996 AAATTAAAATAAATAACATACAAAG-C
1 AAATTAAAATAAATAACATA-AAAGAC
18229022 AAATTAAAATAAATAACATAAAAGAC
1 AAATTAAAATAAATAACATAAAAGAC
*
18229048 AATTTAAAATAA
1 AAATTAAAATAA
18229060 TGTATAAAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 4 0.11
26 32 0.89
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.22
Consensus pattern (26 bp):
AAATTAAAATAAATAACATAAAAGAC
Found at i:18230749 original size:22 final size:22
Alignment explanation
Indices: 18230723--18230766 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
18230713 CCTCTTCGCC
18230723 AAACTCGTTGTCGATTGTCGTT
1 AAACTCGTTGTCGATTGTCGTT
18230745 AAACTCGTTGTCGATTGTCGTT
1 AAACTCGTTGTCGATTGTCGTT
18230767 CTCTTTAGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.41
Consensus pattern (22 bp):
AAACTCGTTGTCGATTGTCGTT
Found at i:18231814 original size:29 final size:29
Alignment explanation
Indices: 18231770--18231831 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
18231760 GTAACATGTG
*
18231770 TGTTTGGAATATTGTATTCGTATTTTGTA
1 TGTTTGGAATAGTGTATTCGTATTTTGTA
18231799 TGTTTGGAATAGTGTATTCGTATTTTGTA
1 TGTTTGGAATAGTGTATTCGTATTTTGTA
18231828 TGTT
1 TGTT
18231832 AATGGAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.19, C:0.03, G:0.23, T:0.55
Consensus pattern (29 bp):
TGTTTGGAATAGTGTATTCGTATTTTGTA
Found at i:18234899 original size:23 final size:23
Alignment explanation
Indices: 18234869--18234926 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
18234859 ATGTTTTGGA
18234869 AATGGCTAAATGTGGTACGTTTT
1 AATGGCTAAATGTGGTACGTTTT
18234892 AATGGCTAAATGTGGTACGTTTT
1 AATGGCTAAATGTGGTACGTTTT
* *
18234915 AGTGCCTAAATG
1 AATGGCTAAATG
18234927 GACTAGAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (23 bp):
AATGGCTAAATGTGGTACGTTTT
Found at i:18252543 original size:16 final size:16
Alignment explanation
Indices: 18252524--18252568 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
18252514 CTATTACGTC
*
18252524 TCTATTCCATTATGCA
1 TCTATTCCATTACGCA
18252540 TCTATTCCATTACGCA
1 TCTATTCCATTACGCA
18252556 TCTATTCCATTAC
1 TCTATTCCATTAC
18252569 AGCGAACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.24, C:0.29, G:0.04, T:0.42
Consensus pattern (16 bp):
TCTATTCCATTACGCA
Found at i:18255154 original size:7 final size:7
Alignment explanation
Indices: 18255142--18255166 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
18255132 ATCAGTATAT
18255142 AAAAATA
1 AAAAATA
18255149 AAAAATA
1 AAAAATA
18255156 AAAAATA
1 AAAAATA
18255163 AAAA
1 AAAA
18255167 GAAAATAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:18255971 original size:44 final size:44
Alignment explanation
Indices: 18255923--18256038 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 44
18255913 CTAATCCACT
* * *
18255923 CCACTACAACTTTAGGGAGATAGGA-TTTTTTCATTCAGTCTGCC
1 CCACTACAACTTTAGGGAGATAAGACTTTCTT-ACTCAGTCTGCC
* *
18255967 CCACTGCAA-TTTCAGGG-GAATAAGACTTTCTTACTCAGTCTGCT
1 CCACTACAACTTT-AGGGAG-ATAAGACTTTCTTACTCAGTCTGCC
* *
18256011 CCACTACAACTTCAGCGAGATAAGACTT
1 CCACTACAACTTTAGGGAGATAAGACTT
18256039 ATGCGATCTA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
43 4 0.07
44 47 0.80
45 8 0.14
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (44 bp):
CCACTACAACTTTAGGGAGATAAGACTTTCTTACTCAGTCTGCC
Found at i:18256649 original size:44 final size:44
Alignment explanation
Indices: 18256616--18256871 Score: 325
Period size: 44 Copynumber: 5.8 Consensus size: 44
18256606 GACAAGGTCT
* * * *
18256616 ATAATCTTTAACCTATTCCACTGCTGACGAGGGAGATAGGATTC
1 ATAATCTTCAACTTATTCCACTGCTGACCAGGGAGATAAGATTC
* * **
18256660 ACAATCCTCCAA-TTATTCCACTGCTGAAGAGGGAGATAAGATTC
1 ATAAT-CTTCAACTTATTCCACTGCTGACCAGGGAGATAAGATTC
* * *
18256704 GTATTCTTCAACTTATTCCACTGCTGACTAGGGAGATAAGATTC
1 ATAATCTTCAACTTATTCCACTGCTGACCAGGGAGATAAGATTC
* *
18256748 GTAATCTTTAACTTATTCCACTGCTGACCAGGGAGATAAGATTC
1 ATAATCTTCAACTTATTCCACTGCTGACCAGGGAGATAAGATTC
18256792 ATAATCTTCAACTTATTCCACTGCTGACCAGGGAGATAAGATTC
1 ATAATCTTCAACTTATTCCACTGCTGACCAGGGAGATAAGATTC
* * * * * *
18256836 GTAATCTTTAACCTATTCCATTGTTGTCCAGGGAGA
1 ATAATCTTCAACTTATTCCACTGCTGACCAGGGAGA
18256872 AAGGGTTGGG
Statistics
Matches: 187, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
43 5 0.03
44 178 0.95
45 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (44 bp):
ATAATCTTCAACTTATTCCACTGCTGACCAGGGAGATAAGATTC
Found at i:18256753 original size:132 final size:132
Alignment explanation
Indices: 18256617--18256855 Score: 372
Period size: 132 Copynumber: 1.8 Consensus size: 132
18256607 ACAAGGTCTA
* *
18256617 TAATCTTTAACCTATTCCACTGCTGACGAGGGAGATAGGATTCACAATCCTCCAA-TTATTCCAC
1 TAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAAGATTCACAAT-CTCCAACTTATTCCAC
* * *
18256681 TGCTGAAGAGGGAGATAAGATTCGTATTCTTCAACTTATTCCACTGCTGACTAGGGAGATAAGAT
65 TGCTGAACAGGGAGATAAGATTCGTAATCTTCAACCTATTCCACTGCTGACTAGGGAGATAAGAT
18256746 TCG
130 TCG
* * *
18256749 TAATCTTTAACTTATTCCACTGCTGACCAGGGAGATAAGATTCATAATCTTCAACTTATTCCACT
1 TAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAAGATTCACAATCTCCAACTTATTCCACT
* *
18256814 GCTGACCAGGGAGATAAGATTCGTAATCTTTAACCTATTCCA
66 GCTGAACAGGGAGATAAGATTCGTAATCTTCAACCTATTCCA
18256856 TTGTTGTCCA
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
131 5 0.05
132 91 0.95
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (132 bp):
TAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAAGATTCACAATCTCCAACTTATTCCACT
GCTGAACAGGGAGATAAGATTCGTAATCTTCAACCTATTCCACTGCTGACTAGGGAGATAAGATT
CG
Found at i:18256991 original size:88 final size:88
Alignment explanation
Indices: 18256887--18257076 Score: 265
Period size: 88 Copynumber: 2.2 Consensus size: 88
18256877 TTGGGGTCAT
** * **
18256887 CGATCTGCTTCGCTGTCAGTTTAGGAATGTCAGATCTGCTATTTTTAACCTGCTCCACCGCAACC
1 CGATCTGCTTCGCTGTCAGTACAGGAAAGGAAGATCTGCTATTTTTAACCTGCTCCACCGCAACC
18256952 CAGGGAGGCAAGGCT-AGTGTCTC
66 CAGGGAGGCAAGGCTGA-TGTCTC
* * ** *
18256975 CGATCTGCTTCGCTGTCGGTACAGGAAAGGAAGATCTGCTATTTTTAACTTGCTCTGCTGCAACC
1 CGATCTGCTTCGCTGTCAGTACAGGAAAGGAAGATCTGCTATTTTTAACCTGCTCCACCGCAACC
*
18257040 CAGGGAGGCAAGGCTGATGTCTT
66 CAGGGAGGCAAGGCTGATGTCTC
18257063 CGATCTGCTTCGCT
1 CGATCTGCTTCGCT
18257077 ATAGGTGTAG
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 89 0.99
89 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.25, T:0.29
Consensus pattern (88 bp):
CGATCTGCTTCGCTGTCAGTACAGGAAAGGAAGATCTGCTATTTTTAACCTGCTCCACCGCAACC
CAGGGAGGCAAGGCTGATGTCTC
Found at i:18262852 original size:11 final size:11
Alignment explanation
Indices: 18262838--18262868 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
18262828 TAGAAATAAT
18262838 ATAAATAAATA
1 ATAAATAAATA
18262849 ATAAATAAATA
1 ATAAATAAATA
18262860 A-AAATAAAT
1 ATAAATAAAT
18262869 CAATGACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.40
11 12 0.60
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
ATAAATAAATA
Found at i:18263355 original size:25 final size:23
Alignment explanation
Indices: 18263322--18263370 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 23
18263312 TATTAGTTGA
*
18263322 AAAATAAATAAATATGTACATATAT
1 AAAAGAAATAAATA--TACATATAT
18263347 AAAAGAAATAAATATACATATAT
1 AAAAGAAATAAATATACATATAT
18263370 A
1 A
18263371 TAGATTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 10 0.43
25 13 0.57
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (23 bp):
AAAAGAAATAAATATACATATAT
Found at i:18268744 original size:50 final size:50
Alignment explanation
Indices: 18268666--18268777 Score: 116
Period size: 50 Copynumber: 2.2 Consensus size: 50
18268656 CATGTATGCC
* * * * **
18268666 CATACGAGCTATGAATCGGGAGGCTCATACAAGCTGTAAATCAAGAAGCT
1 CATACGAGCTGTAAATCGGAAAGCTCATACAAGCTACAAATCAAGAAGCT
* * * * *
18268716 CATACGAGCTGTAAATCGGAAAGTTCATACGAGTTACAAATTAGGAAGCT
1 CATACGAGCTGTAAATCGGAAAGCTCATACAAGCTACAAATCAAGAAGCT
*
18268766 CATACGAACTGT
1 CATACGAGCTGT
18268778 GGTGTGCCTG
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (50 bp):
CATACGAGCTGTAAATCGGAAAGCTCATACAAGCTACAAATCAAGAAGCT
Found at i:18268746 original size:25 final size:25
Alignment explanation
Indices: 18268666--18268748 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 25
18268656 CATGTATGCC
* * * *
18268666 CATACGAGCTATGAATCGGGAGGCT
1 CATACGAGCTGTAAATCGGAAAGCT
* *
18268691 CATACAAGCTGTAAATC-AAGAAGCT
1 CATACGAGCTGTAAATCGGA-AAGCT
*
18268716 CATACGAGCTGTAAATCGGAAAGTT
1 CATACGAGCTGTAAATCGGAAAGCT
18268741 CATACGAG
1 CATACGAG
18268749 TTACAAATTA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
25 46 0.98
26 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.20
Consensus pattern (25 bp):
CATACGAGCTGTAAATCGGAAAGCT
Found at i:18272007 original size:7 final size:7
Alignment explanation
Indices: 18271995--18272030 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
18271985 CTGCTGAATC
18271995 CTCCTTT
1 CTCCTTT
18272002 CTCCTTT
1 CTCCTTT
18272009 CTCCTTT
1 CTCCTTT
*
18272016 CCCCTTT
1 CTCCTTT
*
18272023 CCCCTTT
1 CTCCTTT
18272030 C
1 C
18272031 CATCTCTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (7 bp):
CTCCTTT
Found at i:18272809 original size:27 final size:27
Alignment explanation
Indices: 18272779--18272935 Score: 172
Period size: 27 Copynumber: 5.8 Consensus size: 27
18272769 AAAAAGACCA
* * *
18272779 AAATACCCTCAAAGGGTAAACTCACTG
1 AAATACCCTCGAAGGGTAAAATGACTG
*
18272806 AAATACCCTCAAAGGGTAAAATGA-TCG
1 AAATACCCTCGAAGGGTAAAATGACT-G
* * *
18272833 AAATACCCCCGAAGGGTAAAATAACTA
1 AAATACCCTCGAAGGGTAAAATGACTG
* *
18272860 AAATACCCTCGAATGGTAAAATGACCG
1 AAATACCCTCGAAGGGTAAAATGACTG
* * *
18272887 AAATACCCCCGAAGGGTTAAATGACCG
1 AAATACCCTCGAAGGGTAAAATGACTG
* *
18272914 AAATACTCTCGAAGTGTAAAAT
1 AAATACCCTCGAAGGGTAAAAT
18272936 AACTATTATA
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 108 0.98
28 1 0.01
ACGTcount: A:0.43, C:0.22, G:0.17, T:0.18
Consensus pattern (27 bp):
AAATACCCTCGAAGGGTAAAATGACTG
Found at i:18272850 original size:54 final size:53
Alignment explanation
Indices: 18272768--18272935 Score: 192
Period size: 54 Copynumber: 3.1 Consensus size: 53
18272758 GTAATGGGCC
* * * * * *
18272768 TAAAAAGACCAAAATACCCTCAAAGGGTAAACTCACTGAAATACCCTCAAAGGG
1 TAAAATGACCGAAATACCCCCGAAGGGTAAA-TAACTGAAATACCCTCGAAGGG
* * *
18272822 TAAAATGATCGAAATACCCCCGAAGGGTAAAATAACTAAAATACCCTCGAATGG
1 TAAAATGACCGAAATACCCCCGAAGGGT-AAATAACTGAAATACCCTCGAAGGG
* * * *
18272876 TAAAATGACCGAAATACCCCCGAAGGGTTAAATGACCGAAATACTCTCGAAGTG
1 TAAAATGACCGAAATACCCCCGAAGGG-TAAATAACTGAAATACCCTCGAAGGG
18272930 TAAAAT
1 TAAAAT
18272936 AACTATTATA
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
54 92 0.96
55 4 0.04
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (53 bp):
TAAAATGACCGAAATACCCCCGAAGGGTAAATAACTGAAATACCCTCGAAGGG
Found at i:18272948 original size:81 final size:81
Alignment explanation
Indices: 18272778--18272940 Score: 218
Period size: 81 Copynumber: 2.0 Consensus size: 81
18272768 TAAAAAGACC
* * * *
18272778 AAAATACCCTCAAAGGGTAAACTCACTGAAATACCCTCAAAGGGTAAAATGATCGAAATACCCCC
1 AAAATACCCTCAAAGGGTAAAATCACCGAAATACCCCCAAAGGGTAAAATGACCGAAATACCCCC
18272843 GAAGGGTAAAATAACT
66 GAAGGGTAAAATAACT
* * * * * * *
18272859 AAAATACCCTCGAATGGTAAAATGACCGAAATACCCCCGAAGGGTTAAATGACCGAAATACTCTC
1 AAAATACCCTCAAAGGGTAAAATCACCGAAATACCCCCAAAGGGTAAAATGACCGAAATACCCCC
*
18272924 GAAGTGTAAAATAACT
66 GAAGGGTAAAATAACT
18272940 A
1 A
18272941 TTATACCCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (81 bp):
AAAATACCCTCAAAGGGTAAAATCACCGAAATACCCCCAAAGGGTAAAATGACCGAAATACCCCC
GAAGGGTAAAATAACT
Found at i:18275306 original size:22 final size:22
Alignment explanation
Indices: 18275278--18275322 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
18275268 AGATGGTCAG
18275278 TCAGAGAGGGTGATTCAAATAT
1 TCAGAGAGGGTGATTCAAATAT
18275300 TCAGAGAGGGTGATTCAAATAT
1 TCAGAGAGGGTGATTCAAATAT
18275322 T
1 T
18275323 GGAGGATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.29
Consensus pattern (22 bp):
TCAGAGAGGGTGATTCAAATAT
Found at i:18277888 original size:27 final size:27
Alignment explanation
Indices: 18277557--18277888 Score: 294
Period size: 27 Copynumber: 12.3 Consensus size: 27
18277547 TTAATGGGCC
* * * *
18277557 TAAAATGCCCAAAATACTCTCAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
18277584 TAAAATGATCGAAATACCCTCAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * * *
18277611 TATAATAACTGAAATACCCTCAAAGGA
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * *
18277638 TAAAATGACTGAAATACCCCCGAAAGA
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
18277665 TAAAATGACAGAATTACCCTCGAATGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
18277692 CAAAATAACCGAAATA-CCTGCGAAGGG
1 TAAAATGACCGAAATACCCT-CGAAGGG
* *
18277719 TAAAATGATCGAAATACCCCCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
18277746 TAAAATGATTC--AACACCCTCGAAGCG
1 TAAAATGA-CCGAAATACCCTCGAAGGG
* *
18277772 TAAAATGATCGAAATACCCTCGAAGAG
1 TAAAATGACCGAAATACCCTCGAAGGG
*
18277799 TAAAATGATCGAAATACACCT-GAAGGG
1 TAAAATGACCGAAATAC-CCTCGAAGGG
* * * *
18277826 TAAAATAACTGAAATACCCCCGAAGGT
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
18277853 TAAAATGACCGAAATACCCTCAAAAGT
1 TAAAATGACCGAAATACCCTCGAAGGG
18277880 TAAAATGAC
1 TAAAATGAC
18277889 TGTTATACCC
Statistics
Matches: 254, Mismatches: 44, Indels: 14
0.81 0.14 0.04
Matches are distributed among these distances:
25 2 0.01
26 25 0.10
27 220 0.87
28 7 0.03
ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGGG
Found at i:18277907 original size:27 final size:27
Alignment explanation
Indices: 18277772--18277912 Score: 101
Period size: 27 Copynumber: 5.2 Consensus size: 27
18277762 CCTCGAAGCG
* *
18277772 TAAAATGATCGAAATACCCTCGAAGAG-
1 TAAAATGACCGAAATACCC-CTAAGAGT
* * *
18277799 TAAAATGATCGAAATACACCTGAAG-GG
1 TAAAATGACCGAAATACCCCT-AAGAGT
* * *
18277826 TAAAATAACTGAAATACCCCCGAAG-GT
1 TAAAATGACCGAAATA-CCCCTAAGAGT
*
18277853 TAAAATGACCGAAATA-CCCTCAAAAGT
1 TAAAATGACCGAAATACCCCT-AAGAGT
* **
18277880 TAAAATGACTGTTATACCCCTAAGAGT
1 TAAAATGACCGAAATACCCCTAAGAGT
*
18277907 TGAAAT
1 TAAAAT
18277913 ATATGTATGA
Statistics
Matches: 91, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
25 3 0.03
26 4 0.04
27 77 0.85
28 7 0.08
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCTAAGAGT
Found at i:18278092 original size:26 final size:26
Alignment explanation
Indices: 18278063--18278130 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
18278053 TTGCCACATA
*
18278063 TACTGTTACTGGCAGCCTTGCTGTGT
1 TACTATTACTGGCAGCCTTGCTGTGT
18278089 TACTATTACTGGCAGCCTTGCTGTGT
1 TACTATTACTGGCAGCCTTGCTGTGT
*
18278115 TACTATTACTAGCAGC
1 TACTATTACTGGCAGC
18278131 TCTACTGCGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
TACTATTACTGGCAGCCTTGCTGTGT
Found at i:18281020 original size:25 final size:25
Alignment explanation
Indices: 18280982--18281029 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
18280972 TCATATTCAT
18280982 GTATGCTCATACGAGCTATGAATCA
1 GTATGCTCATACGAGCTATGAATCA
18281007 GTATGCTC-TCACGAGCTATGAAT
1 GTATGCTCAT-ACGAGCTATGAAT
18281030 TGGGAAGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATGAATCA
Found at i:18281045 original size:25 final size:25
Alignment explanation
Indices: 18280986--18281046 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
18280976 ATTCATGTAT
* *
18280986 GCTCATACGAGCTATGAATCAGTAT
1 GCTCATACGAGCTATGAATCAGGAA
**
18281011 GCTC-TCACGAGCTATGAATTGGGAA
1 GCTCAT-ACGAGCTATGAATCAGGAA
18281036 GCTCATACGAG
1 GCTCATACGAG
18281047 TTGTGGTGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 1 0.03
25 28 0.93
26 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTATGAATCAGGAA
Found at i:18298909 original size:27 final size:27
Alignment explanation
Indices: 18298879--18298943 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
18298869 TTTTTTCCCT
* * * *
18298879 CAAAGACTTTATTTTATGATTTTGAAA
1 CAAAGACTTGATATTATAATTTTAAAA
18298906 CAAAGACTTGATATTATAATTTTAAAA
1 CAAAGACTTGATATTATAATTTTAAAA
18298933 CAAAGACTTGA
1 CAAAGACTTGA
18298944 GTGTGAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (27 bp):
CAAAGACTTGATATTATAATTTTAAAA
Found at i:18302997 original size:27 final size:27
Alignment explanation
Indices: 18302967--18303025 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
18302957 TTAAAAAAAA
18302967 CCTTTCTGGAAATCTATGAAAAGGAAG
1 CCTTTCTGGAAATCTATGAAAAGGAAG
**
18302994 CCTTTCTGGCTATCTATGAAAAGGAAG
1 CCTTTCTGGAAATCTATGAAAAGGAAG
18303021 CCTTT
1 CCTTT
18303026 GTGACGATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (27 bp):
CCTTTCTGGAAATCTATGAAAAGGAAG
Found at i:18303035 original size:27 final size:27
Alignment explanation
Indices: 18302978--18303055 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
18302968 CTTTCTGGAA
* * *
18302978 ATCTATGAAAAGGAAGCCTTTCTGGCT
1 ATCTATGAAAAGGAAGCCTTTGTGACG
18303005 ATCTATGAAAAGGAAGCCTTTGTGACG
1 ATCTATGAAAAGGAAGCCTTTGTGACG
* *
18303032 ATCTAT-AAAGGGAATGCATTTGTG
1 ATCTATGAAAAGGAA-GCCTTTGTG
18303056 GTGCACTTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 7 0.16
27 38 0.84
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.29
Consensus pattern (27 bp):
ATCTATGAAAAGGAAGCCTTTGTGACG
Found at i:18307439 original size:13 final size:13
Alignment explanation
Indices: 18307421--18307497 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
18307411 AGTTCTTTAT
18307421 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
18307434 TGCTTTTGAAAAA
1 TGCTTTTGAAAAG
* *
18307447 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
18307460 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
18307473 TGTTTTTGAGAAG
1 TGCTTTTGAAAAG
*
18307486 TACTTTTGAAAA
1 TGCTTTTGAAAA
18307498 TTTTGAATGT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 53 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:18307778 original size:21 final size:19
Alignment explanation
Indices: 18307722--18307782 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
18307712 TAATTATTTA
18307722 TTAAATT-TAATTAGAATAT
1 TTAAATTATAATTA-AATAT
* *
18307741 ATAAATTATATTTAAATAT
1 TTAAATTATAATTAAATAT
18307760 TTAAATATAATAATTAAATAT
1 TTAAAT-T-ATAATTAAATAT
18307781 TT
1 TT
18307783 GTAATTAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.46
20 6 0.17
21 13 0.37
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TTAAATTATAATTAAATAT
Found at i:18309635 original size:72 final size:73
Alignment explanation
Indices: 18309545--18309719 Score: 189
Period size: 72 Copynumber: 2.4 Consensus size: 73
18309535 AAAATCACAT
* * * * *
18309545 ATAAACAACTATTGATAAAACTAATTTAGTA-AAAAATAAGTAGAATATAAATTCAATGA-AGAA
1 ATAAACAACTTTTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAACTCAAT-ATACAA
*
18309608 AGACCAAAC
65 AAACCAAAC
* * *
18309617 ATAAACAACTTTTAATAAAACTAGA-TTA-CACATAAATAAGTAGAACATAAACTCAATATCCAA
1 ATAAACAACTTTTGATAAAACTA-ATTTAGCACAAAAATAAGTAGAACATAAACTCAATATACAA
18309680 AAACCAAAC
65 AAACCAAAC
* *
18309689 ATAAATAA-TTGTTGATAAAACTAGTTTAGCA
1 ATAAACAACTT-TTGATAAAACTAATTTAGCA
18309720 TTGTTGTTTA
Statistics
Matches: 85, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
71 4 0.05
72 78 0.92
73 3 0.04
ACGTcount: A:0.54, C:0.13, G:0.08, T:0.25
Consensus pattern (73 bp):
ATAAACAACTTTTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAACTCAATATACAAA
AACCAAAC
Found at i:18310150 original size:18 final size:18
Alignment explanation
Indices: 18310127--18310174 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
18310117 TCCATCAATT
*
18310127 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
18310145 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
18310163 TGAACATCATTT
1 TGAACATCATTT
18310175 CTCATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:18311205 original size:15 final size:15
Alignment explanation
Indices: 18311185--18311221 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
18311175 ACAAAGTTTT
18311185 TAATTAATATTTATG
1 TAATTAATATTTATG
18311200 TAATTAATATTTATG
1 TAATTAATATTTATG
18311215 TAATTAA
1 TAATTAA
18311222 AAAAAGTCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TAATTAATATTTATG
Found at i:18311209 original size:132 final size:129
Alignment explanation
Indices: 18311068--18311482 Score: 624
Period size: 132 Copynumber: 3.3 Consensus size: 129
18311058 ACAAATTTTT
18311068 TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTATTGCTAC
1 TAATTAATATTTATGTAATTAAAAATAGTCCCTTT-AGATGATTATTAATTATTATTATTGCTAC
18311133 TGAAAAAATTTTACATTCTTTTACATTATTTTCTATAATTTTACAAAGTTTTTAATTAATATTTA
65 TGAAAAAATTTTACATTCTTTTACATT-TTTTCT-TAATTTTACAAAGTTTTTAATTAATATTTA
18311198 TG
128 TG
*
18311200 TAATTAATATTTATGTAATTAAAAAAAGT-CC----GATGATTATTAATTATTATTATTGCTACT
1 TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAGATGATTATTAATTATTATTATTGCTACT
*
18311260 GACAAAATTTTACATTCTTTT-C------T-TTAATTTTACAAAGTTTTTAATTAATATTTATG
66 GAAAAAATTTTACATTCTTTTACATTTTTTCTTAATTTTACAAAGTTTTTAATTAATATTTATG
*
18311316 TAATTAATATTTATGTAATTAAAAATGGTCCCTTTATGATGATTATTAATTATTATTATTGCTAC
1 TAATTAATATTTATGTAATTAAAAATAGTCCCTTTA-GATGATTATTAATTATTATTATTGCTAC
18311381 T-AACAAAATTTTACATTCTTTTACATTCTTTTCTGTAATTTTACAAAGTTTTTAATTAATATTT
65 TGAA-AAAATTTTACATTCTTTTACATT-TTTTCT-TAATTTTACAAAGTTTTTAATTAATATTT
18311445 ATG
127 ATG
* *
18311448 TAATTAATATTTATTTAATTAAAAATAGTCTCTTT
1 TAATTAATATTTATGTAATTAAAAATAGTCCCTTT
18311483 TTCTGTAAAG
Statistics
Matches: 258, Mismatches: 8, Indels: 34
0.86 0.03 0.11
Matches are distributed among these distances:
116 59 0.23
117 3 0.01
118 1 0.00
121 1 0.00
122 47 0.18
123 1 0.00
125 1 0.00
126 49 0.19
130 1 0.00
131 3 0.01
132 92 0.36
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.49
Consensus pattern (129 bp):
TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAGATGATTATTAATTATTATTATTGCTACT
GAAAAAATTTTACATTCTTTTACATTTTTTCTTAATTTTACAAAGTTTTTAATTAATATTTATG
Found at i:18311292 original size:116 final size:117
Alignment explanation
Indices: 18311151--18311477 Score: 458
Period size: 116 Copynumber: 2.7 Consensus size: 117
18311141 TTTTACATTC
* *
18311151 TTTTACATTATTTTCTATAATTTTACAAAGTTTTTAATTAATATTTATGTAATTAATATTTATGT
1 TTTTACATTCTTTTCTTTAATTTTACAAAGTTTTTAATTAATATTTATGTAATTAATATTTATGT
* *
18311216 AATTAAAAAAAGTCC-GATGATTATTAATTATTATTATTGCTACTGACAAAA
66 AATTAAAAATAGTCCTGATGATTATTAATTATTATTATTGCTACTAACAAAA
18311267 TTTTACATTCTTTTCTTTAATTTTACAAAGTTTTTAATTAATATTTATGTAATTAATATTTATGT
1 TTTTACATTCTTTTCTTTAATTTTACAAAGTTTTTAATTAATATTTATGTAATTAATATTTATGT
*
18311332 AATTAAAAATGGTCCCTTTATGATGATTATTAATTATTATTATTGCTACTAACAAAA
66 AATTAAAAATAGT-CC----TGATGATTATTAATTATTATTATTGCTACTAACAAAA
18311389 TTTTACATTCTTTTACATTCTTTTCTGTAATTTTACAAAGTTTTTAATTAATATTTATGTAATTA
1 TTTTACATTC--TT---TTC---T-T-TAATTTTACAAAGTTTTTAATTAATATTTATGTAATTA
*
18311454 ATATTTATTTAATTAAAAATAGTC
56 ATATTTATGTAATTAAAAATAGTC
18311478 TCTTTTTCTG
Statistics
Matches: 188, Mismatches: 7, Indels: 17
0.89 0.03 0.08
Matches are distributed among these distances:
116 74 0.39
117 2 0.01
122 45 0.24
124 2 0.01
127 3 0.02
130 1 0.01
131 2 0.01
132 59 0.31
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.50
Consensus pattern (117 bp):
TTTTACATTCTTTTCTTTAATTTTACAAAGTTTTTAATTAATATTTATGTAATTAATATTTATGT
AATTAAAAATAGTCCTGATGATTATTAATTATTATTATTGCTACTAACAAAA
Found at i:18311321 original size:15 final size:15
Alignment explanation
Indices: 18311301--18311337 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
18311291 ACAAAGTTTT
18311301 TAATTAATATTTATG
1 TAATTAATATTTATG
18311316 TAATTAATATTTATG
1 TAATTAATATTTATG
18311331 TAATTAA
1 TAATTAA
18311338 AAATGGTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TAATTAATATTTATG
Found at i:18311453 original size:15 final size:15
Alignment explanation
Indices: 18311433--18311469 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
18311423 ACAAAGTTTT
18311433 TAATTAATATTTATG
1 TAATTAATATTTATG
*
18311448 TAATTAATATTTATT
1 TAATTAATATTTATG
18311463 TAATTAA
1 TAATTAA
18311470 AAATAGTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAATTAATATTTATG
Found at i:18313526 original size:19 final size:19
Alignment explanation
Indices: 18313489--18313528 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
18313479 GAACCAGCAC
** *
18313489 CAGCAGAGGATTAATGAAG
1 CAGCAGAGGAACAAAGAAG
18313508 CAGCAGAGGAACAAAGAAG
1 CAGCAGAGGAACAAAGAAG
18313527 CA
1 CA
18313529 ACGATGAGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.15, G:0.30, T:0.07
Consensus pattern (19 bp):
CAGCAGAGGAACAAAGAAG
Found at i:18314906 original size:27 final size:27
Alignment explanation
Indices: 18314823--18314932 Score: 109
Period size: 27 Copynumber: 4.1 Consensus size: 27
18314813 ACACGCCAGA
18314823 AAAAAGAAG-CATTT-TGGCGATCTATG
1 AAAAAGAAGTC-TTTGTGGCGATCTATG
* * ** * *
18314849 AAAAGGAA-TACTTTATGGTTATTTATA
1 AAAAAGAAGT-CTTTGTGGCGATCTATG
18314876 AAAAAGAAGTCTTTGTGGCGATCTATG
1 AAAAAGAAGTCTTTGTGGCGATCTATG
* *
18314903 AAAAGGAAGCCTTTGTGGCGATCTATG
1 AAAAAGAAGTCTTTGTGGCGATCTATG
18314930 AAA
1 AAA
18314933 CAAAAGCTTT
Statistics
Matches: 67, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
26 10 0.15
27 56 0.84
28 1 0.01
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (27 bp):
AAAAAGAAGTCTTTGTGGCGATCTATG
Found at i:18314939 original size:27 final size:27
Alignment explanation
Indices: 18314824--18314976 Score: 98
Period size: 27 Copynumber: 5.7 Consensus size: 27
18314814 CACGCCAGAA
*
18314824 AAAAG-AAGCATTT-TGGCGATCTATG
1 AAAAGAAAGCCTTTGTGGCGATCTATG
* ** * ** *
18314849 AAAAGGAATACTTTATGGTTATTTAT-
1 AAAAGAAAGCCTTTGTGGCGATCTATG
* *
18314875 AAAAAAGAAGTCTTTGTGGCGATCTATG
1 AAAAGA-AAGCCTTTGTGGCGATCTATG
*
18314903 AAAAGGAAGCCTTTGTGGCGATCTATG
1 AAAAGAAAGCCTTTGTGGCGATCTATG
* * * *
18314930 AAACA-AAAGCTTTTGTAGAGATATATG
1 AAA-AGAAAGCCTTTGTGGCGATCTATG
** *
18314957 AAGGGAATGCCTTTGTGGCG
1 AAAAGAAAGCCTTTGTGGCG
18314977 CACTCTAAAG
Statistics
Matches: 94, Mismatches: 28, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
25 5 0.05
26 9 0.10
27 75 0.80
28 5 0.05
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (27 bp):
AAAAGAAAGCCTTTGTGGCGATCTATG
Found at i:18314945 original size:54 final size:54
Alignment explanation
Indices: 18314822--18314976 Score: 147
Period size: 54 Copynumber: 2.9 Consensus size: 54
18314812 AACACGCCAG
* ** * ** *
18314822 AAAAAAGAAGCATTT-TGGCGATCTATGAAAAGGAATACTTTATGGTTATTTAT
1 AAAAAAGAAGCTTTTGTGGCGATCTATGAAAAGGAAGCCTTTGTGGCGATCTAT
18314875 AAAAAAGAAG-TCTTTGTGGCGATCTATGAAAAGGAAGCCTTTGTGGCGATCTAT
1 AAAAAAGAAGCT-TTTGTGGCGATCTATGAAAAGGAAGCCTTTGTGGCGATCTAT
* * * * *
18314929 GAAACAA-AAGCTTTTGTAGAGATATATG-AAGGGAATGCCTTTGTGGCG
1 -AAAAAAGAAGCTTTTGTGGCGATCTATGAAAAGGAA-GCCTTTGTGGCG
18314977 CACTCTAAAG
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
53 19 0.22
54 60 0.71
55 6 0.07
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (54 bp):
AAAAAAGAAGCTTTTGTGGCGATCTATGAAAAGGAAGCCTTTGTGGCGATCTAT
Found at i:18317845 original size:5 final size:5
Alignment explanation
Indices: 18317835--18317859 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18317825 AGTCATCAAG
18317835 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
18317860 AGGTTCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:18319609 original size:15 final size:15
Alignment explanation
Indices: 18319591--18319625 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
18319581 TTTTGTTTTC
18319591 TTTTTTTATTAATTA
1 TTTTTTTATTAATTA
**
18319606 TTTTTTTATTTTTTA
1 TTTTTTTATTAATTA
18319621 TTTTT
1 TTTTT
18319626 CATATTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTTATTAATTA
Found at i:18319625 original size:30 final size:31
Alignment explanation
Indices: 18319571--18319642 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 31
18319561 TTACAGTTCA
* *
18319571 AATTAGTTTTTTTTGTTTTCTTTTT-TTA-TT
1 AATTA-TTTTTTTTGTTTTATTTTTCATATTT
*
18319601 AATTATTTTTTTATTTTTTATTTTTCATATTT
1 AATTATTTTTTT-TGTTTTATTTTTCATATTT
18319633 AATT-TTTTTT
1 AATTATTTTTT
18319643 AAACTAGGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 7 0.19
30 15 0.42
31 8 0.22
32 6 0.17
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (31 bp):
AATTATTTTTTTTGTTTTATTTTTCATATTT
Found at i:18319721 original size:17 final size:17
Alignment explanation
Indices: 18319698--18319744 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
18319688 ATACGCATAT
18319698 TTATTTTTTA-ATATAA
1 TTATTTTTTATATATAA
*
18319714 TGTATTTTTTTATATGTAA
1 T-TA-TTTTTTATATATAA
18319733 TTATTTTTTATA
1 TTATTTTTTATA
18319745 ATCTATAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 1 0.04
17 11 0.41
18 9 0.33
19 6 0.22
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (17 bp):
TTATTTTTTATATATAA
Found at i:18319733 original size:19 final size:17
Alignment explanation
Indices: 18319701--18319746 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 17
18319691 CGCATATTTA
18319701 TTTTTTAATATAATGTAT
1 TTTTTTAATATAAT-TAT
*
18319719 TTTTTTATATGTAATTAT
1 TTTTTTA-ATATAATTAT
18319737 TTTTTATAAT
1 TTTTT-TAAT
18319747 CTATAAGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTTTTAATATAATTAT
Found at i:18324279 original size:52 final size:53
Alignment explanation
Indices: 18324223--18324324 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 53
18324213 ACCCTTTTAC
*
18324223 TTTCCTCCAAAAATTTT-ATTTCC-CC-AAACCCTAAAAACTTTTTCTTTTTAAT
1 TTTCC-CCAAAAATTTTAACTTCCTCCTAAACCCTAAAAACTTTTT-TTTTTAAT
* *
18324275 TTTCCCCCAAAATTTTAACTTCCTCCTAAACCCTAATAACTTTTTTTTTT
1 TTTCCCCAAAAATTTTAACTTCCTCCTAAACCCTAAAAACTTTTTTTTTT
18324325 CGAATTTATG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
51 10 0.23
52 10 0.23
53 7 0.16
54 17 0.39
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.45
Consensus pattern (53 bp):
TTTCCCCAAAAATTTTAACTTCCTCCTAAACCCTAAAAACTTTTTTTTTTAAT
Found at i:18326408 original size:22 final size:24
Alignment explanation
Indices: 18326382--18326434 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 24
18326372 TTAAAAAAAA
18326382 TTAAAAATTTAATAT-TAT-T-AT
1 TTAAAAATTTAATATATATCTAAT
*
18326403 TTTAAAA-TTAATATATATCTAAT
1 TTAAAAATTTAATATATATCTAAT
18326426 TTAATAAAT
1 TTAA-AAAT
18326435 ACATTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 7 0.28
21 9 0.36
22 1 0.04
23 5 0.20
24 3 0.12
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
TTAAAAATTTAATATATATCTAAT
Found at i:18327347 original size:50 final size:52
Alignment explanation
Indices: 18327283--18327385 Score: 158
Period size: 50 Copynumber: 2.0 Consensus size: 52
18327273 TTACAAATTG
*
18327283 TAAGAAAATATTATTAAATTATTT-AATTTTAATCACTTAATTATT-TGATGT
1 TAAGAAAATATTATTAAATTATTTAAATTTAAAT-ACTTAATTATTATGATGT
*
18327334 TAAGAAAAT-TTATTAAATTATTTAAATTTAAATAGTTAATTATTATGATGT
1 TAAGAAAATATTATTAAATTATTTAAATTTAAATACTTAATTATTATGATGT
18327385 T
1 T
18327386 TAGATTATTA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
50 24 0.50
51 24 0.50
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (52 bp):
TAAGAAAATATTATTAAATTATTTAAATTTAAATACTTAATTATTATGATGT
Found at i:18329053 original size:63 final size:63
Alignment explanation
Indices: 18328963--18329355 Score: 366
Period size: 63 Copynumber: 6.2 Consensus size: 63
18328953 ACAGCACACA
* * * * *
18328963 CAATCATTCCCCACATCTACACCTTCAAC-TTCGGTTTAATTTTCACAAGCACCTCAGCACGCG
1 CAATCATTCCCTACATCAACACATTCAACATT-AGTTTAATTTTCACAAGCACCTCAACACGCG
* * * * *
18329026 CAATCATTCCCTGCATCAACACATTCAACAATATTTTATTTTTCACAAGCACCTCAACATGCG
1 CAATCATTCCCTACATCAACACATTCAACATTAGTTTAATTTTCACAAGCACCTCAACACGCG
* * * * * *
18329089 TAATCATTCCCTACATCAACACATACAACAATATTTTATTTTTCACAAGCACCTCAACATGCG
1 CAATCATTCCCTACATCAACACATTCAACATTAGTTTAATTTTCACAAGCACCTCAACACGCG
* * *
18329152 TAATCATTCCCTACATCAACACATACAACATTAGTTT-ATTTTCCACAAGCACCACAACACGCG
1 CAATCATTCCCTACATCAACACATTCAACATTAGTTTAATTTT-CACAAGCACCTCAACACGCG
* * * * * * * ***
18329215 CAATCATTCACTACATCGACACATTCATCATTAGTTT-ATTTTACATAAGCATCACAGCACATA
1 CAATCATTCCCTACATCAACACATTCAACATTAGTTTAATTTT-CACAAGCACCTCAACACGCG
* * ** * *
18329278 CAATCATTCCCTGCA-CTAACACATTCATCACCACTTT-ATTTTACACAAGCACCAT-AACACGT
1 CAATCATTCCCTACATC-AACACATTCAACATTAGTTTAATTTT-CACAAGCACC-TCAACACGC
*
18329340 T
63 G
18329341 CAATCATTCCCTACA
1 CAATCATTCCCTACA
18329356 CTGACACCTT
Statistics
Matches: 283, Mismatches: 43, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
62 5 0.02
63 277 0.98
64 1 0.00
ACGTcount: A:0.34, C:0.31, G:0.06, T:0.29
Consensus pattern (63 bp):
CAATCATTCCCTACATCAACACATTCAACATTAGTTTAATTTTCACAAGCACCTCAACACGCG
Found at i:18329285 original size:189 final size:188
Alignment explanation
Indices: 18328963--18329355 Score: 431
Period size: 189 Copynumber: 2.1 Consensus size: 188
18328953 ACAGCACACA
* * * * * * *
18328963 CAATCATTCCCCACATCTACACCTTCAACTTCGGTTTAATTTTCACAAGCACCTCAGCACGCGCA
1 CAATCATTCCCTACATCAACACATACAACTTCAGTTTAATTTTCACAAGCACCACAACACGCGCA
* * * * * *
18329028 ATCATTCCCTGCATCAACACATTCAACAATATTTTATTTTTCACAAGCACCTCAACATGCGTAAT
66 ATCATTCACTACATCAACACATTCAACAATAGTTTATTTTACACAAGCACCACAACATACG-AAT
* * *
18329093 CATTCCCTACA-TCAACACATACAACAATATTTTATTTTTCACAAGCACC-TCAACATGCG-T
130 CATTCCCTACACT-AACACATACAACAACACTTTATTTTACACAAGCACCAT-AACA--CGTT
18329153 -AATCATTCCCTACATCAACACATACAACATT-AGTTT-ATTTTCCACAAGCACCACAACACGCG
1 CAATCATTCCCTACATCAACACATACAAC-TTCAGTTTAATTTT-CACAAGCACCACAACACGCG
* * * * *
18329215 CAATCATTCACTACATCGACACATTCATCATTAGTTTATTTTACATAAGCATCACAGCACATAC-
64 CAATCATTCACTACATCAACACATTCAACAATAGTTTATTTTACACAAGCACCACA--ACATACG
* * * *
18329279 AATCATTCCCTGCACTAACACATTCATCACCACTTTATTTTACACAAGCACCATAACACGTT
127 AATCATTCCCTACACTAACACATACAACAACACTTTATTTTACACAAGCACCATAACACGTT
18329341 CAATCATTCCCTACA
1 CAATCATTCCCTACA
18329356 CTGACACCTT
Statistics
Matches: 170, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
187 2 0.01
188 6 0.04
189 153 0.90
190 4 0.02
191 5 0.03
ACGTcount: A:0.34, C:0.31, G:0.06, T:0.29
Consensus pattern (188 bp):
CAATCATTCCCTACATCAACACATACAACTTCAGTTTAATTTTCACAAGCACCACAACACGCGCA
ATCATTCACTACATCAACACATTCAACAATAGTTTATTTTACACAAGCACCACAACATACGAATC
ATTCCCTACACTAACACATACAACAACACTTTATTTTACACAAGCACCATAACACGTT
Found at i:18330650 original size:24 final size:24
Alignment explanation
Indices: 18330599--18330651 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
18330589 AATAAGCTCG
* * **
18330599 TTTAAAAGCTCGTTTATTGGCTTT
1 TTTATAAGCTCGTTTATTGACTCA
*
18330623 TTTATAAGCTTGTTTATTGACTCA
1 TTTATAAGCTCGTTTATTGACTCA
18330647 TTTAT
1 TTTAT
18330652 TTATTAATGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.11, G:0.13, T:0.53
Consensus pattern (24 bp):
TTTATAAGCTCGTTTATTGACTCA
Found at i:18330820 original size:24 final size:23
Alignment explanation
Indices: 18330785--18330834 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
18330775 GACAAAAGAG
18330785 AAAATAGACCCAAACTAAAACAAA
1 AAAATAGACCCAAACT-AAACAAA
* * *
18330809 AAAATAGGCCCAACCTACACAAA
1 AAAATAGACCCAAACTAAACAAA
18330832 AAA
1 AAA
18330835 TAAAAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.62, C:0.24, G:0.06, T:0.08
Consensus pattern (23 bp):
AAAATAGACCCAAACTAAACAAA
Found at i:18332188 original size:14 final size:15
Alignment explanation
Indices: 18332164--18332204 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
18332154 ACATTAAATT
18332164 AATATAATATTTATC-
1 AATA-AATATTTATCA
18332179 AATAAATATTTATCA
1 AATAAATATTTATCA
18332194 AGATAAATATT
1 A-ATAAATATT
18332205 AAATTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 10 0.42
15 5 0.21
16 9 0.38
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (15 bp):
AATAAATATTTATCA
Found at i:18332309 original size:20 final size:19
Alignment explanation
Indices: 18332258--18332311 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
18332248 ATCTACAAAA
18332258 TAATATTAAATT-A-AATT
1 TAATATTAAATTAATAATT
*
18332275 AAATATTAAGA-TAATCAATT
1 TAATATTAA-ATTAAT-AATT
18332295 TAATATTAAATTAATAA
1 TAATATTAAATTAATAA
18332312 AATACTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 9 0.30
18 2 0.07
19 3 0.10
20 16 0.53
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
TAATATTAAATTAATAATT
Found at i:18332356 original size:37 final size:38
Alignment explanation
Indices: 18332258--18332359 Score: 108
Period size: 37 Copynumber: 2.7 Consensus size: 38
18332248 ATCTACAAAA
18332258 TAATATTAAATTAA-ATTAAA-TATTAAGATAATCAATT
1 TAATATTAAATTAATATTAAACTATTAAGATAAT-AATT
* *
18332295 TAATATTAAATTAATA-AAATACTATTTAGATAAGT-A-T
1 TAATATTAAATTAATATTAA-ACTATTAAGATAA-TAATT
18332332 TAA-ATTAAATTTAATATTAAACTATTAA
1 TAATATTAAA-TTAATATTAAACTATTAA
18332360 AATATTATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
36 6 0.11
37 33 0.60
38 5 0.09
39 10 0.18
40 1 0.02
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (38 bp):
TAATATTAAATTAATATTAAACTATTAAGATAATAATT
Found at i:18333987 original size:16 final size:16
Alignment explanation
Indices: 18333963--18333993 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18333953 CTATGCATGC
18333963 AAAAGATAAAAGACAG
1 AAAAGATAAAAGACAG
*
18333979 AAAATATAAAAGACA
1 AAAAGATAAAAGACA
18333994 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.06, G:0.13, T:0.10
Consensus pattern (16 bp):
AAAAGATAAAAGACAG
Found at i:18347988 original size:20 final size:18
Alignment explanation
Indices: 18347951--18347997 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
18347941 TTGAGAGGGT
18347951 TAAAAGCAAAGCAAGAGAAA
1 TAAAAGCAAAGCAAGAG--A
*
18347971 TAAAAGCATAG-AACGAGA
1 TAAAAGCAAAGCAA-GAGA
18347989 TAAAAGCAA
1 TAAAAGCAA
18347998 TGTGCATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 9 0.38
19 2 0.08
20 13 0.54
ACGTcount: A:0.62, C:0.11, G:0.19, T:0.09
Consensus pattern (18 bp):
TAAAAGCAAAGCAAGAGA
Found at i:18353796 original size:16 final size:17
Alignment explanation
Indices: 18353757--18353798 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
18353747 TGAAAAAGAG
*
18353757 ATTCTATTTTAATTTGT
1 ATTCAATTTTAATTTGT
*
18353774 -TTTAATTTTAATTT-T
1 ATTCAATTTTAATTTGT
18353789 ATTCAATTTT
1 ATTCAATTTT
18353799 TGTTTGCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 1 0.05
16 20 0.95
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
ATTCAATTTTAATTTGT
Done.