Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 78 of 214
Found at i:22010423 original size:25 final size:23
Alignment explanation
Indices: 22010349--22010484 Score: 98
Period size: 25 Copynumber: 5.6 Consensus size: 23
22010339 AATTATTTAT
22010349 TTATTTATTTTAAAATTTTT-ATA
1 TTATTTATTTT-AAATTTTTAATA
*
22010372 TTATTTATTTTAAATTGTTTTATTA
1 TTATTTATTTTAAA-T-TTTTAATA
*
22010397 TTATTTATTTTAAGTTTTTCACATA
1 TTATTTATTTTAAATTTTT-A-ATA
** *
22010422 TTATGCATTTTAAACTATATTAAACTA
1 TTATTTATTTTAAA-T-T-TTTAA-TA
**
22010449 TTATCCATTTTAAA--TTTACATA
1 TTATTTATTTTAAATTTTTA-ATA
22010471 TTATTTATTTTAAA
1 TTATTTATTTTAAA
22010485 CCATATATAT
Statistics
Matches: 92, Mismatches: 11, Indels: 21
0.74 0.09 0.17
Matches are distributed among these distances:
22 20 0.22
23 17 0.18
24 6 0.07
25 28 0.30
26 2 0.02
27 17 0.18
28 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTTATTTTAAATTTTTAATA
Found at i:22014187 original size:31 final size:31
Alignment explanation
Indices: 22014151--22014212 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
22014141 ATTCCTTTTC
*
22014151 ATTTCATTCACAAATAAAATATTCTTTTATT
1 ATTTCATTCACAAAGAAAATATTCTTTTATT
* *
22014182 ATTTCATTCATAACGAAAATATTCTTTTATT
1 ATTTCATTCACAAAGAAAATATTCTTTTATT
22014213 TCATTCTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.13, G:0.02, T:0.48
Consensus pattern (31 bp):
ATTTCATTCACAAAGAAAATATTCTTTTATT
Found at i:22014829 original size:8 final size:8
Alignment explanation
Indices: 22014812--22014904 Score: 77
Period size: 8 Copynumber: 11.6 Consensus size: 8
22014802 GACATTAGAG
22014812 AAAAAAAC
1 AAAAAAAC
*
22014820 AAAAAGAC
1 AAAAAAAC
22014828 AAAAAAAAC
1 -AAAAAAAC
22014837 AAAAAAAC
1 AAAAAAAC
22014845 --AAAAAC
1 AAAAAAAC
*
22014851 AAAAAGAC
1 AAAAAAAC
22014859 AAAATAAAC
1 AAAA-AAAC
*
22014868 AAAGAATA-
1 AAA-AAAAC
*
22014876 AGAAAAAC
1 AAAAAAAC
*
22014884 -AAAGAAC
1 AAAAAAAC
22014891 AAAAACAAC
1 AAAAA-AAC
22014900 AAAAA
1 AAAAA
22014905 CAAAAACCTC
Statistics
Matches: 67, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
6 6 0.09
7 8 0.12
8 29 0.43
9 23 0.34
10 1 0.01
ACGTcount: A:0.81, C:0.12, G:0.05, T:0.02
Consensus pattern (8 bp):
AAAAAAAC
Found at i:22014852 original size:31 final size:31
Alignment explanation
Indices: 22014814--22014911 Score: 121
Period size: 31 Copynumber: 3.2 Consensus size: 31
22014804 CATTAGAGAA
22014814 AAAAACAAAAAGACAAAAAAAACAAAAAAAC
1 AAAAACAAAAAGACAAAAAAAACAAAAAAAC
* *
22014845 AAAAACAAAAAGACAAAATAAACAAAGAATAAG
1 AAAAACAAAAAGACAAAAAAAACAAA-AA-AAC
* *
22014878 AAAAACAAAGA-ACAAAAACAAC--AAAAAC
1 AAAAACAAAAAGACAAAAAAAACAAAAAAAC
22014906 AAAAAC
1 AAAAAC
22014912 CTCTACCGAG
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
28 8 0.14
29 2 0.03
30 1 0.02
31 25 0.42
32 11 0.19
33 12 0.20
ACGTcount: A:0.80, C:0.13, G:0.05, T:0.02
Consensus pattern (31 bp):
AAAAACAAAAAGACAAAAAAAACAAAAAAAC
Found at i:22014893 original size:7 final size:6
Alignment explanation
Indices: 22014814--22014911 Score: 55
Period size: 6 Copynumber: 16.0 Consensus size: 6
22014804 CATTAGAGAA
22014814 AAAAAC AAAAAGAC AAAAA- AAACAA- AAAAAC AAAAAC AAAAAGAC AAAATA-
1 AAAAAC -AAAA-AC AAAAAC AAA-AAC AAAAAC AAAAAC -AAAA-AC AAAA-AC
* * *
22014865 AACAAAG AATAAG AAAAAC AAAGAAC AAAAAC ---AAC AAAAAC AAAAAC
1 AA-AAAC AAAAAC AAAAAC AAA-AAC AAAAAC AAAAAC AAAAAC AAAAAC
22014912 CTCTACCGAG
Statistics
Matches: 76, Mismatches: 4, Indels: 23
0.74 0.04 0.22
Matches are distributed among these distances:
3 3 0.04
5 5 0.07
6 37 0.49
7 27 0.36
8 4 0.05
ACGTcount: A:0.80, C:0.13, G:0.05, T:0.02
Consensus pattern (6 bp):
AAAAAC
Found at i:22014902 original size:9 final size:9
Alignment explanation
Indices: 22014812--22014907 Score: 60
Period size: 9 Copynumber: 10.9 Consensus size: 9
22014802 GACATTAGAG
22014812 AAAAA-AAC
1 AAAAACAAC
*
22014820 AAAAA-GAC
1 AAAAACAAC
*
22014828 AAAAAAAAC
1 AAAAACAAC
22014837 AAAAA-AAC
1 AAAAACAAC
22014845 AAAAACAA-
1 AAAAACAAC
*
22014853 AAAGACAA-
1 AAAAACAAC
22014861 AATAAACAA-
1 AA-AAACAAC
* *
22014870 AGAATAAGAAA
1 A-AA-AACAAC
*
22014881 AACAAAGAAC
1 AA-AAACAAC
22014891 AAAAACAAC
1 AAAAACAAC
22014900 AAAAACAA
1 AAAAACAA
22014908 AAACCTCTAC
Statistics
Matches: 74, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
8 29 0.39
9 30 0.41
10 13 0.18
11 2 0.03
ACGTcount: A:0.80, C:0.12, G:0.05, T:0.02
Consensus pattern (9 bp):
AAAAACAAC
Found at i:22015436 original size:53 final size:53
Alignment explanation
Indices: 22015354--22015455 Score: 150
Period size: 53 Copynumber: 1.9 Consensus size: 53
22015344 TCAAAAAAAT
* * *
22015354 AAAAAAAAAAGGAGAGGCCAAGGTTAAAACCTACAAAGGACGCTTTGAGTCTC
1 AAAAAAAAAAGGAGAGGCCAAGGTGAAAACCCACAAAGGACGCCTTGAGTCTC
* * *
22015407 AAAAAAAAAGGGAGAGGCCAAGGTGAAAACCCGCAAAGGGCGCCTTGAG
1 AAAAAAAAAAGGAGAGGCCAAGGTGAAAACCCACAAAGGACGCCTTGAG
22015456 ACCAAAGGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.44, C:0.18, G:0.27, T:0.11
Consensus pattern (53 bp):
AAAAAAAAAAGGAGAGGCCAAGGTGAAAACCCACAAAGGACGCCTTGAGTCTC
Found at i:22016630 original size:142 final size:143
Alignment explanation
Indices: 22016265--22016630 Score: 502
Period size: 142 Copynumber: 2.6 Consensus size: 143
22016255 AATACGGCAA
* * *
22016265 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTTTCTCCCTAAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGC
* * * *
22016330 ACCGGAGCAGACTAAAGACAATAAATCTTATTTCCCTGGCATTGCAATGAAACAGATTAAAGCTA
66 AGCGGAGCAGACTGAAGACAACAAATCTTATTTCCCTAGCATTGCAATGAAACAGATTAAAGCTA
22016395 CAAATTATGGCGG
131 CAAATTATGGCGG
* * *
22016408 ATCTTATCTTCTTGAAGTT-CCGTGGAGCAGATTGAAACCACCAGCCTTATCTCCCTAAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGC
* * * * * * * *
22016472 AGCGAAGTAGGCTGAAGACAACGAATCTTATTT-CCTAGCGTTGCAGTGGAACAGTTTAAAGCTA
66 AGCGGAGCAGACTGAAGACAACAAATCTTATTTCCCTAGCATTGCAATGAAACAGATTAAAGCTA
22016536 CAAATTATGGCGG
131 CAAATTATGGCGG
* * * *
22016549 ATCTTATTTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACTAGCCTTATCTCCCTAAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGC
* *
22016614 AGTGGAGCAGATTGAAG
66 AGCGGAGCAGACTGAAG
22016631 TTACCAATTC
Statistics
Matches: 192, Mismatches: 30, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
141 55 0.29
142 120 0.62
143 17 0.09
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (143 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGC
AGCGGAGCAGACTGAAGACAACAAATCTTATTTCCCTAGCATTGCAATGAAACAGATTAAAGCTA
CAAATTATGGCGG
Found at i:22016713 original size:44 final size:44
Alignment explanation
Indices: 22016644--22016788 Score: 128
Period size: 44 Copynumber: 3.3 Consensus size: 44
22016634 CCAATTCTTA
* * *
22016644 TCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
1 TCTCCCTGAAATTACAGCGGAGTAGATCGAAGCTACAAATCTCT
* *** * * * * * **
22016688 TCTCCCTGAAATTATATTTGAGTAGATTGAAACCACAAGTGTAA
1 TCTCCCTGAAATTACAGCGGAGTAGATCGAAGCTACAAATCTCT
* * *
22016732 CCTTCCTGAAATTACAGCGGAGTAGATCAAAGCTACAAATCTCT
1 TCTCCCTGAAATTACAGCGGAGTAGATCGAAGCTACAAATCTCT
*
22016776 TCTCCCTAAAATT
1 TCTCCCTGAAATT
22016789 GCAATGGGTT
Statistics
Matches: 70, Mismatches: 31, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (44 bp):
TCTCCCTGAAATTACAGCGGAGTAGATCGAAGCTACAAATCTCT
Found at i:22017666 original size:25 final size:26
Alignment explanation
Indices: 22017634--22017717 Score: 90
Period size: 25 Copynumber: 3.3 Consensus size: 26
22017624 TTTGATTTCA
22017634 ATTTATTTTTGAAA-TTTATTTAT-TT
1 ATTTATTTTT-AAATTTTATTTATATT
*
22017659 ATTTA-TTTTAAATTTTTTTTATATT
1 ATTTATTTTTAAATTTTATTTATATT
22017684 ATTTA-TTTT-AATTTGT-TTTATTATT
1 ATTTATTTTTAAATTT-TATTTA-TATT
22017709 ATTTATTTT
1 ATTTATTTT
22017718 AATTTTTTCA
Statistics
Matches: 53, Mismatches: 1, Indels: 9
0.84 0.02 0.14
Matches are distributed among these distances:
23 3 0.06
24 21 0.40
25 26 0.49
26 3 0.06
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (26 bp):
ATTTATTTTTAAATTTTATTTATATT
Found at i:22017703 original size:15 final size:14
Alignment explanation
Indices: 22017648--22017723 Score: 56
Period size: 15 Copynumber: 5.6 Consensus size: 14
22017638 ATTTTTGAAA
22017648 TTTA-TTTATTTA-
1 TTTATTTTATTTAT
*
22017660 TTTATTTTA--AAT
1 TTTATTTTATTTAT
22017672 TTT-TTTTATATTA-
1 TTTATTTTAT-TTAT
*
22017685 TTTATTTTAATTTGT
1 TTTATTTT-ATTTAT
22017700 TTTATTATTATTTAT
1 TTTATT-TTATTTAT
22017715 TTTAATTTT
1 TTT-ATTTT
22017724 TTCACATATT
Statistics
Matches: 50, Mismatches: 4, Indels: 17
0.70 0.06 0.24
Matches are distributed among these distances:
11 6 0.12
12 7 0.14
13 7 0.14
14 7 0.14
15 18 0.36
16 5 0.10
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (14 bp):
TTTATTTTATTTAT
Found at i:22017718 original size:25 final size:25
Alignment explanation
Indices: 22017648--22017722 Score: 107
Period size: 25 Copynumber: 2.9 Consensus size: 25
22017638 ATTTTTGAAA
*
22017648 TTTATTTATTTATTTATTTTAAATTTTT
1 TTTA-TTA-TTATTTATTTT-AATTTGT
22017676 TTTA-TATTATTTATTTTAATTTGT
1 TTTATTATTATTTATTTTAATTTGT
22017700 TTTATTATTATTTATTTTAATTT
1 TTTATTATTATTTATTTTAATTT
22017723 TTTCACATAT
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
24 10 0.22
25 29 0.64
26 2 0.04
28 4 0.09
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.73
Consensus pattern (25 bp):
TTTATTATTATTTATTTTAATTTGT
Found at i:22017733 original size:25 final size:23
Alignment explanation
Indices: 22017657--22017793 Score: 89
Period size: 25 Copynumber: 5.6 Consensus size: 23
22017647 ATTTATTTAT
*
22017657 TTATTTATTTTAAATTTTTTTTATA
1 TTATTTATTTT-AA-TTTTTTAATA
*
22017682 TTATTTATTTTAATTTGTTTTATTA
1 TTATTTATTTTAA-TT-TTTTAATA
22017707 TTATTTATTTTAATTTTTTCACATA
1 TTATTTATTTTAATTTTTT-A-ATA
** *
22017732 TTATGCATTTTAAATTATATTAAACTA
1 TTATTTATTTT-AATT-T-TTTAA-TA
* * *
22017759 TTATCTGTTTTAA--ATTTACATA
1 TTATTTATTTTAATTTTTTA-ATA
22017781 TTATTTATTTTAA
1 TTATTTATTTTAA
22017794 ACCATATATA
Statistics
Matches: 91, Mismatches: 13, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
22 16 0.18
23 5 0.05
24 8 0.09
25 41 0.45
26 7 0.08
27 12 0.13
28 2 0.02
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (23 bp):
TTATTTATTTTAATTTTTTAATA
Found at i:22017733 original size:50 final size:52
Alignment explanation
Indices: 22017648--22017744 Score: 128
Period size: 50 Copynumber: 1.9 Consensus size: 52
22017638 ATTTTTGAAA
** **
22017648 TTTATTTATTTATTTATTTTAAATTTTTTTTATATTATTTATTTTAATTTGT
1 TTTATTTATTTATTTATTTTAAATTTTTTACATATTATGCATTTTAATTTGT
22017700 TTTA-TTA-TTATTTATTTT-AATTTTTTCACATATTATGCATTTTAA
1 TTTATTTATTTATTTATTTTAAATTTTTT-ACATATTATGCATTTTAA
22017745 ATTATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
49 8 0.20
50 25 0.62
51 3 0.08
52 4 0.10
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (52 bp):
TTTATTTATTTATTTATTTTAAATTTTTTACATATTATGCATTTTAATTTGT
Found at i:22018019 original size:21 final size:20
Alignment explanation
Indices: 22017990--22018042 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
22017980 CTTTGTATGT
* *
22017990 TATTTTTTATTTTTAATTGC
1 TATTATTTATTTTGAATTGC
*
22018010 ATATTATTTACTTTGAATTGC
1 -TATTATTTATTTTGAATTGC
22018031 T-TTATATTATTT
1 TATTAT-TTATTT
22018043 ACCTCAAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 6 0.22
21 17 0.63
ACGTcount: A:0.25, C:0.06, G:0.06, T:0.64
Consensus pattern (20 bp):
TATTATTTATTTTGAATTGC
Found at i:22018052 original size:24 final size:25
Alignment explanation
Indices: 22018010--22018068 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
22018000 TTTTAATTGC
* ** *
22018010 ATATTATTTACTTTGAATTG-CTTT
1 ATATTATTTACCTCAAATTGTCTAT
22018034 ATATTATTTACCTCAAATTGTTCTAT
1 ATATTATTTACCTCAAATTG-TCTAT
22018060 ATATTATTT
1 ATATTATTT
22018069 TGTTTTCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 17 0.59
26 12 0.41
ACGTcount: A:0.29, C:0.10, G:0.05, T:0.56
Consensus pattern (25 bp):
ATATTATTTACCTCAAATTGTCTAT
Found at i:22036349 original size:12 final size:12
Alignment explanation
Indices: 22036332--22036357 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22036322 TCTTGGATGT
22036332 TCGACCATGCTA
1 TCGACCATGCTA
22036344 TCGACCATGCTA
1 TCGACCATGCTA
22036356 TC
1 TC
22036358 CAAACACTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.35, G:0.15, T:0.27
Consensus pattern (12 bp):
TCGACCATGCTA
Found at i:22038849 original size:37 final size:38
Alignment explanation
Indices: 22038807--22038892 Score: 102
Period size: 45 Copynumber: 2.1 Consensus size: 38
22038797 AAATTGTAAT
22038807 AAAACTAG-TTGTAATAAAAATTTGTGTCTTTGTGTCG
1 AAAACTAGATTGTAATAAAAATTTGTGTCTTTGTGTCG
22038844 AAAACTAGTTTTAAAATTGTAATAAAAATTTGTGTCTTTGTGTCG
1 AAAACTAG-------ATTGTAATAAAAATTTGTGTCTTTGTGTCG
22038889 AAAA
1 AAAA
22038893 TTGAAAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
37 8 0.20
45 33 0.80
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (38 bp):
AAAACTAGATTGTAATAAAAATTTGTGTCTTTGTGTCG
Found at i:22039252 original size:13 final size:13
Alignment explanation
Indices: 22039234--22039259 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22039224 ACCTTTTCAA
22039234 ATCTCAAAATACG
1 ATCTCAAAATACG
22039247 ATCTCAAAATACG
1 ATCTCAAAATACG
22039260 TAGTTTTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
ATCTCAAAATACG
Found at i:22039706 original size:3 final size:3
Alignment explanation
Indices: 22039698--22039926 Score: 137
Period size: 3 Copynumber: 77.0 Consensus size: 3
22039688 ACATAGAAAT
* * * * *
22039698 ATA ATA ATA ATA ATA ATA CTA A-A TTA ATG GTA ATT ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
22039745 ATA ATA GA-A ATA ATA TTA ATA ACA A-A ATA AAA ATA GTA ATA ACA
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
22039789 ATTA ATA ATA ATT CTA ATA ATG ATG TTA ATA GTA ATA A-A ATA AAA
1 A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
22039834 ATA A-A ACTA ATG ATA ATA ATG CTA ATA ATA ATA GTA AGA ATA AAA
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
22039879 ATA ATA TTA ATA TTA ATA ATA AT- ATCA ATA ATA CTA CTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
22039924 ATA
1 ATA
22039927 GTGTAATATT
Statistics
Matches: 167, Mismatches: 49, Indels: 20
0.71 0.21 0.08
Matches are distributed among these distances:
2 10 0.06
3 150 0.90
4 7 0.04
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:22040826 original size:36 final size:36
Alignment explanation
Indices: 22040785--22040857 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
22040775 AGTGGGTGGA
22040785 GTTGGTACGGCGCTGCAGGCGGTCAGGGCTAGGTGC
1 GTTGGTACGGCGCTGCAGGCGGTCAGGGCTAGGTGC
*
22040821 GTTGGTACGGCGCTGCAGGCGGTTAGGGCTAGGTGC
1 GTTGGTACGGCGCTGCAGGCGGTCAGGGCTAGGTGC
22040857 G
1 G
22040858 GCGGCCGGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.11, C:0.21, G:0.48, T:0.21
Consensus pattern (36 bp):
GTTGGTACGGCGCTGCAGGCGGTCAGGGCTAGGTGC
Found at i:22041538 original size:44 final size:44
Alignment explanation
Indices: 22041490--22042062 Score: 343
Period size: 44 Copynumber: 12.7 Consensus size: 44
22041480 TTTAATCCAT
* **
22041490 TCCACTGCAAGTTCAGGGAGATAGGATTAATAGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAGGATTGGTAGCTTCAATCTGC
* * *
22041534 TCCACTGCAACTTAAGGGAGATAAGATTGGTATCTTCAA-CTTGC
1 TCCACTGCAACTTCAGGGAGATAGGATTGGTAGCTTCAATC-TGC
** * *
22041578 TCCACTGCAACTTCAAAGAGATAAGG-TTGGGTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGAT-AGGATT-GGTAGCTTCAATCTGC
* * * * *
22041623 TCTACTGCAACTTTAGGGAGATAAGACTTGTTGTGGTAGATTTAATCTGAC
1 TCCACTGCAACTTCAGGGAGAT-AG----GAT-TGGTAGCTTCAATCTG-C
* * ** * * *
22041674 -CTACTGCAACTTCAGAGGTG-TAGGATTCATCA-TTTTAATCCGC
1 TCCACTGCAACTTCAG-GGAGATAGGATTGGT-AGCTTCAATCTGC
** * *
22041717 TCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTTAATCTAC
1 TCCACTGCAACTTCAGGGAGATAGGATTGGTAGCTTCAATCTGC
* * * * *
22041761 TCCACTGCAACTTCAAGGAGATAAGATTGGCATCTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAGGATTGGTAGCTTCAATCTGC
* * * * *
22041805 TCCACTTCAACTTCAGAGAGATAAGG-TTGGGTATCTTCAATTTGT
1 TCCACTGCAACTTCAGGGAGAT-AGGATT-GGTAGCTTCAATCTGC
* * * * * * *
22041850 TCCACTGCCACTTCAGTGAGATAAGACTTGTTATGGTAGATTTAATCCGA
1 TCCACTGCAACTTCAGGGAGAT-AG----GAT-TGGTAGCTTCAATCTGC
* * ** * * * *
22041900 TCTACTGCAACTTCAGAGG-TATAGGATTCATCGTTTTAATCCGC
1 TCCACTGCAACTTCAG-GGAGATAGGATTGGTAGCTTCAATCTGC
* **
22041944 TCCACTGTAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAGGATTGGTAGCTTCAATCTGC
** * *
22041988 TCCACTGCAACTTCAGGGAGATAATATTGGTATCTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAGGATTGGTAGCTTCAATCTGC
* * *
22042032 TCTACTGCAACTTTAGAGAGATAAGG-TTGGT
1 TCCACTGCAACTTCAGGGAGAT-AGGATTGGT
22042063 TATCTTCCAT
Statistics
Matches: 414, Mismatches: 88, Indels: 54
0.74 0.16 0.10
Matches are distributed among these distances:
43 8 0.02
44 260 0.63
45 78 0.19
46 1 0.00
49 6 0.01
50 54 0.13
51 7 0.02
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAGGATTGGTAGCTTCAATCTGC
Found at i:22041682 original size:183 final size:182
Alignment explanation
Indices: 22041493--22041829 Score: 419
Period size: 183 Copynumber: 1.8 Consensus size: 182
22041483 AATCCATTCC
* *
22041493 ACTGCAAGTTCAG-GGAGATAGGATTAAT-AGCTTCAATCTGCTCCACTGCAACTTAAGGGAGAT
1 ACTGCAACTTCAGAGGAG-TAGGATTAATCA-CTTCAATCCGCTCCACTGCAACTTAAGGGAGAT
** * * * * **
22041556 AAGATTGGTATCTTCAA-CTTGCTCCACTGCAACTTCAAAGAGATAAGGTTGGGTATCTTCAGTC
64 AAGATTAATAGCTTCAATC-TACTCCACTGCAACTTCAAAGAGATAAGATT-GGCATCTTCAACC
* * *
22041620 TGCTCTACTGCAACTTTAGGGAGATAAGACTTGTTGTGGTAGATTTAATCTGACCT
127 TGCTCCACTGCAACTTCAGAGAGATAAGACTTGTTGTGGTAGATTTAATCTGACCT
* * * * * *
22041676 ACTGCAACTTCAGAGGTGTAGGATTCATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAG
1 ACTGCAACTTCAGAGGAGTAGGATTAATCACTTCAATCCGCTCCACTGCAACTTAAGGGAGATAA
* *
22041741 GATTAATAGCTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGATTGGCATCTTCAACCTGCT
66 GATTAATAGCTTCAATCTACTCCACTGCAACTTCAAAGAGATAAGATTGGCATCTTCAACCTGCT
*
22041806 CCACTTCAACTTCAGAGAGATAAG
131 CCACTGCAACTTCAGAGAGATAAG
22041830 GTTGGGTATC
Statistics
Matches: 129, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
182 34 0.26
183 90 0.70
184 5 0.04
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (182 bp):
ACTGCAACTTCAGAGGAGTAGGATTAATCACTTCAATCCGCTCCACTGCAACTTAAGGGAGATAA
GATTAATAGCTTCAATCTACTCCACTGCAACTTCAAAGAGATAAGATTGGCATCTTCAACCTGCT
CCACTGCAACTTCAGAGAGATAAGACTTGTTGTGGTAGATTTAATCTGACCT
Found at i:22041783 original size:227 final size:227
Alignment explanation
Indices: 22041388--22042069 Score: 1051
Period size: 227 Copynumber: 3.0 Consensus size: 227
22041378 CTGCTAACTA
* ** *
22041388 CAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTCATTATAGTAGATTTAATCTGACCTACTG
1 CAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTTATGGTAGATTTAATCTGACCTACTG
* * ** *
22041453 CAACTTCAGAGGTTTAGGATTCATTGTTTTAATCCATTCCACTGCAAGTTCAGGGAGATAGGATT
66 CAACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
*
22041518 AATAGCTTCAATCTGCTCCACTGCAACTT-AAGGGAGATAAGATTGGTATCTTCAACTTGCTCCA
131 AATAGCTTCAATCTGCTCCACTGCAACTTCAA-GGAGATAAGATTGGTATCTTCAACCTGCTCCA
*
22041582 CTGCAACTTCAAAGAGATAAGGTTGGGTATCTT
195 CTGCAACTTCAGAGAGATAAGGTTGGGTATCTT
* *
22041615 CAGTCTGCTCTACTGCAACTTTAGGGAGATAAGACTTGTTGTGGTAGATTTAATCTGACCTACTG
1 CAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTTATGGTAGATTTAATCTGACCTACTG
* *
22041680 CAACTTCAGAGGTGTAGGATTCATCATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
66 CAACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
* * *
22041745 AATAGCTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGATTGGCATCTTCAACCTGCTCCAC
131 AATAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTATCTTCAACCTGCTCCAC
*
22041810 TTCAACTTCAGAGAGATAAGGTTGGGTATCTT
196 TGCAACTTCAGAGAGATAAGGTTGGGTATCTT
* * * * * * * *
22041842 CAATTTGTTCCACTGCCACTTCAGTGAGATAAGACTTGTTATGGTAGATTTAATCCGATCTACTG
1 CAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTTATGGTAGATTTAATCTGACCTACTG
*
22041907 CAACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
66 CAACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
* * *
22041972 AATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAATATTGGTATCTTCAACCTGCTCTAC
131 AATAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTATCTTCAACCTGCTCCAC
* *
22042037 TGCAACTTTAGAGAGATAAGGTTGGTTATCTT
196 TGCAACTTCAGAGAGATAAGGTTGGGTATCTT
22042069 C
1 C
22042070 CATCTTGATC
Statistics
Matches: 414, Mismatches: 40, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
227 412 1.00
228 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (227 bp):
CAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTTATGGTAGATTTAATCTGACCTACTG
CAACTTCAGAGGTATAGGATTCATCGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
AATAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTGGTATCTTCAACCTGCTCCAC
TGCAACTTCAGAGAGATAAGGTTGGGTATCTT
Found at i:22042555 original size:24 final size:24
Alignment explanation
Indices: 22042523--22042580 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
22042513 TGGATTGCCC
22042523 CCACTGTAATCTTCAAGGCTCAAT
1 CCACTGTAATCTTCAAGGCTCAAT
*
22042547 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGCTCAAT
22042571 CCACTGTAAT
1 CCACTGTAAT
22042581 TTTGAGACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGCTCAAT
Found at i:22048784 original size:17 final size:18
Alignment explanation
Indices: 22048754--22048787 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22048744 AAGTGAGTAA
22048754 ATAAAAAAATAATATATG
1 ATAAAAAAATAATATATG
*
22048772 ATAAAACAA-AATATAT
1 ATAAAAAAATAATATAT
22048788 TTAAACTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (18 bp):
ATAAAAAAATAATATATG
Found at i:22048828 original size:3 final size:3
Alignment explanation
Indices: 22048820--22049040 Score: 128
Period size: 3 Copynumber: 74.0 Consensus size: 3
22048810 ACATAGAAAT
* * * * *
22048820 ATA ATA ATA ATA ATA ATA ATA CTA A-A TTA ATG GTA ATT ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
22048867 ATA GA-A ATA ACA TTA ATA ATA AAA ATA ATA ATA GTA ATA ACA ATTA
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA
* * * * * * *
22048913 ATA ATA ATT CTA ATA ATG ATG TTA ATA GTA ATA A-A ATA AGA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
22048959 ACTA ATG GTA ATA ATG TTA ATA ATA ATA GTA AGA ATA ATA ATA ATA
1 A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
22049005 TTA ATA ATA AT- TTCA ACA ATA CTA ATA ATA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
22049041 GTGTAATATT
Statistics
Matches: 157, Mismatches: 52, Indels: 18
0.69 0.23 0.08
Matches are distributed among these distances:
2 7 0.04
3 145 0.92
4 5 0.03
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:22049749 original size:17 final size:18
Alignment explanation
Indices: 22049723--22049759 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
22049713 TTAGTATTTC
*
22049723 AAAATAATAAAAATATAA
1 AAAATAATAAAAAAATAA
22049741 AAAAT-ATAAAAAAATAA
1 AAAATAATAAAAAAATAA
22049758 AA
1 AA
22049760 CGAAACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (18 bp):
AAAATAATAAAAAAATAA
Found at i:22055390 original size:17 final size:16
Alignment explanation
Indices: 22055378--22055409 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
22055368 TAAAATAATT
22055378 TATTTTTTGAAATTTA
1 TATTTTTTGAAATTTA
22055394 GTATTTTTTGAAATTT
1 -TATTTTTTGAAATTT
22055410 TTATAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.62
Consensus pattern (16 bp):
TATTTTTTGAAATTTA
Found at i:22058044 original size:122 final size:122
Alignment explanation
Indices: 22057843--22058178 Score: 388
Period size: 122 Copynumber: 2.8 Consensus size: 122
22057833 CTTTGTGGCA
* * * * * * *
22057843 AGTACTAAATGTAAATGACATCCTTTGTGGGAAAAATTTGGATAGAAAAACCTTTTTGGTGAGTA
1 AGTACTAAATGTAAATGACAACCTTTGTGGCAAAACTCTGGACAGGAAAACCTTTATGGTGAGTA
* * * * * *
22057908 CT-AGATATAAAGGATAGCCTTTGTGGCACAACTCTAGACATGAAAGCCTTTATGGTG
66 CTGA-ATGTAAAGGATAACTTTTGTGGCAAAACTCTAGACAAGAAAGCCTTTATGATG
* * * *
22057965 TGTATTAAATGTAAATGACAACCTTTGTGGCAAAACTCTGGACAGGAAAGCCTTTATAGTGAGTA
1 AGTACTAAATGTAAATGACAACCTTTGTGGCAAAACTCTGGACAGGAAAACCTTTATGGTGAGTA
* * *
22058030 CTGAATGTAAAGGATAACTTTTGTGGCAAAACTTTGGACAAGAAAGCCTTTGTGATG
66 CTGAATGTAAAGGATAACTTTTGTGGCAAAACTCTAGACAAGAAAGCCTTTATGATG
* * * * * * *
22058087 AGTACTAGATAT-AATGATAACTTTTGTGGCAAAACTCTAGACAAGAAAACCTTTGTGGTGAGTA
1 AGTACTAAATGTAAATGACAACCTTTGTGGCAAAACTCTGGACAGGAAAACCTTTATGGTGAGTA
* *
22058151 TTGAATGTAAAGGAAAACTTTTGTGGCA
66 CTGAATGTAAAGGATAACTTTTGTGGCA
22058179 GCTTCTGTTT
Statistics
Matches: 180, Mismatches: 33, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
121 71 0.39
122 108 0.60
123 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.30
Consensus pattern (122 bp):
AGTACTAAATGTAAATGACAACCTTTGTGGCAAAACTCTGGACAGGAAAACCTTTATGGTGAGTA
CTGAATGTAAAGGATAACTTTTGTGGCAAAACTCTAGACAAGAAAGCCTTTATGATG
Found at i:22058130 original size:60 final size:61
Alignment explanation
Indices: 22057893--22058178 Score: 290
Period size: 61 Copynumber: 4.7 Consensus size: 61
22057883 GATAGAAAAA
* * * *
22057893 CCTTTTTGGTGAGTACTAGATATAAAGGATAGCCTTTGTGGCACAACTCTAGACATGAAAG
1 CCTTTATGGTGAGTACTAGATATAAAGGATAACCTTTGTGGCAAAACTCTAGACAAGAAAG
* * * * * * * *
22057954 CCTTTATGGTGTGTATTAAATGTAAATGACAACCTTTGTGGCAAAACTCTGGACAGGAAAG
1 CCTTTATGGTGAGTACTAGATATAAAGGATAACCTTTGTGGCAAAACTCTAGACAAGAAAG
* * * * *
22058015 CCTTTATAGTGAGTACT-GAATGTAAAGGATAACTTTTGTGGCAAAACTTTGGACAAGAAAG
1 CCTTTATGGTGAGTACTAG-ATATAAAGGATAACCTTTGTGGCAAAACTCTAGACAAGAAAG
* * * * *
22058076 CCTTTGTGATGAGTACTAGATAT-AATGATAACTTTTGTGGCAAAACTCTAGACAAGAAAA
1 CCTTTATGGTGAGTACTAGATATAAAGGATAACCTTTGTGGCAAAACTCTAGACAAGAAAG
* * * * *
22058136 CCTTTGTGGTGAGTA-TTGAATGTAAAGGAAAACTTTTGTGGCA
1 CCTTTATGGTGAGTACTAG-ATATAAAGGATAACCTTTGTGGCA
22058179 GCTTCTGTTT
Statistics
Matches: 188, Mismatches: 33, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
59 2 0.01
60 50 0.27
61 135 0.72
62 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (61 bp):
CCTTTATGGTGAGTACTAGATATAAAGGATAACCTTTGTGGCAAAACTCTAGACAAGAAAG
Found at i:22058256 original size:29 final size:29
Alignment explanation
Indices: 22058191--22058256 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
22058181 TTCTGTTTAA
22058191 GAAGA-CCTTTGTGGTAAATCTCTTAAAG
1 GAAGAGCCTTTGTGGTAAATCTCTTAAAG
* *
22058219 GAAGTGCCTTTGTGGT-GATCTCTGTCAAAG
1 GAAGAGCCTTTGTGGTAAATCTCT-T-AAAG
22058249 GAA-AGCCT
1 GAAGAGCCT
22058257 CTATGGTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
28 10 0.31
29 15 0.47
30 7 0.22
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (29 bp):
GAAGAGCCTTTGTGGTAAATCTCTTAAAG
Found at i:22058417 original size:21 final size:20
Alignment explanation
Indices: 22058388--22058430 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
22058378 GCCCCGGCTC
22058388 ATAAAAAAAAATAAACCCAAA
1 ATAAAAAAAAA-AAACCCAAA
* * *
22058409 ATAATAAAACAAAATCCAAA
1 ATAAAAAAAAAAAACCCAAA
22058429 AT
1 AT
22058431 TATATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (20 bp):
ATAAAAAAAAAAAACCCAAA
Found at i:22058547 original size:19 final size:19
Alignment explanation
Indices: 22058523--22058614 Score: 166
Period size: 19 Copynumber: 4.8 Consensus size: 19
22058513 AATTTTCAAG
22058523 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
22058542 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22058561 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
22058580 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22058599 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22058615 AGATATGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22058565 original size:38 final size:38
Alignment explanation
Indices: 22058523--22058637 Score: 185
Period size: 38 Copynumber: 2.9 Consensus size: 38
22058513 AATTTTCAAG
22058523 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
22058561 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
22058599 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT---AGATATGA-TATGTAATCTTAGA
22058638 GATTTAATTT
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
38 51 0.71
41 8 0.11
42 13 0.18
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.39
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:22058865 original size:23 final size:23
Alignment explanation
Indices: 22058821--22058865 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
22058811 TCTTATTTTG
* *
22058821 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
22058844 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
22058866 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:22066242 original size:45 final size:44
Alignment explanation
Indices: 22065939--22066247 Score: 119
Period size: 44 Copynumber: 7.0 Consensus size: 44
22065929 AGCGGAGCAG
*
22065939 GTTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCA
1 GTTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTA
** * * * * **** * * *
22065983 GATCGAAGATACCA-ACCTTGCCTCCCTGGGTTG-TAGCGGAGCA
1 G-TTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTA
* * *
22066026 GGTTAAAAATAGCAGATCTTGCCTTCCTGCACCGATAGTGAAGCA
1 -GTTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTA
** * * * * * * **** * *
22066071 GATCGAAGACACCAG-CCTTGTCTCCCTGGGTTG-CAGCGGAGCA
1 G-TTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTA
* *
22066114 GGTTAAAAATAGCAGATCTTACCTTCCTGCACCGACAGCGAAGCA
1 -GTTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTA
** * * * * ****
22066159 GATCGAAGACACCA-A-CTTTGCCTCCCTGGGTTG-CAGCGAAGTA
1 G-TTAAAAATAGCAGATC-TTGCCTTCCTGCACCGACAGCGAAGTA
22066202 TGTTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTA
1 -GTTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTA
22066247 G
1 G
22066248 ATCGATGACC
Statistics
Matches: 176, Mismatches: 75, Indels: 28
0.63 0.27 0.10
Matches are distributed among these distances:
43 48 0.27
44 77 0.44
45 51 0.29
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (44 bp):
GTTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTA
Found at i:22066275 original size:88 final size:88
Alignment explanation
Indices: 22065599--22066263 Score: 1019
Period size: 88 Copynumber: 7.6 Consensus size: 88
22065589 GTGAAGATAA
* *
22065599 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
22065664 GTAGCGAAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * * *
22065687 CAGATCTTGTCTTCCTGCACCGACAACGAAGCAGATCGAAAACACTAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
**
22065752 GCAGCAAAGC-GGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
*
22065774 CAAATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
22065839 GCAGCGGAGCAAGTTAAAAATTA-
66 GCAGCGGAGCAGGTTAAAAA-TAG
* * * *
22065862 CAGATCTTGCCTTCCTGCACTGATAGTGAAGCAGATCGAAGACACCAGCCTTGTCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
22065927 GTAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* *
22065950 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGATACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
22066015 GTAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
22066038 CAGATCTTGCCTTCCTGCACCGATAGTGAAGCAGATCGAAGACACCAGCCTTGTCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
22066103 GCAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
22066126 CAGATCTTACCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAACTTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* * *
22066191 GCAGCGAAGTATGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
22066214 CAGATCTTGCCTTCCTGCACCGACAGCGAAGTAGATCGATGACCCCAGCC
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
22066264 CTATCTCCCT
Statistics
Matches: 524, Mismatches: 50, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
87 82 0.16
88 440 0.84
89 2 0.00
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
GCAGCGGAGCAGGTTAAAAATAG
Found at i:22066313 original size:44 final size:44
Alignment explanation
Indices: 22066263--22066384 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
22066253 TGACCCCAGC
22066263 CCTATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTAT-AAGT
1 CCTATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTATGAA-T
* * * *
22066307 CCTATCTCCCTGGTCAGCAATGGAATAGGTCT-AAGATTGTGAAT
1 CCTATCTCCCTGGACAGTAGTGGAATAGGT-TGAAGATTATGAAT
* *
22066351 CCTATCTCCCT-GAGCAATAGTGGAGTAGGTTGAA
1 CCTATCTCCCTGGA-CAGTAGTGGAATAGGTTGAA
22066385 AATAGCAGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
43 2 0.03
44 60 0.92
45 3 0.05
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTATGAAT
Found at i:22066803 original size:44 final size:43
Alignment explanation
Indices: 22066748--22067219 Score: 252
Period size: 44 Copynumber: 10.9 Consensus size: 43
22066738 GAAGATGGCA
22066748 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CAAT
* * * *** *
22066792 AATCCTATCT-CCTGAAGTCGCAATGGAGCAGATTAAAATTAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
* * * *
22066834 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGCATCT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCA-AT
* * * *
22066875 ACTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAA-T
* * * *
22066918 AAGCCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAGATGGC--G
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A--GCAAT
22066964 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC-AAT
* ** *
22067008 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAATCACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCA-AT
* * * *** * *
22067052 GATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGTATC--G
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
** * *** * *
22067092 GGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAA--T
* * * *
22067137 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
* * * * *
22067180 CAAGTCTTATCCCCCTGAAATTTCAGTGGGGCAGACTAAA
1 -AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
22067220 TAAACAAATT
Statistics
Matches: 330, Mismatches: 68, Indels: 59
0.72 0.15 0.13
Matches are distributed among these distances:
40 42 0.13
41 19 0.06
42 7 0.02
43 53 0.16
44 101 0.31
45 100 0.30
46 6 0.02
47 1 0.00
49 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAAT
Found at i:22066996 original size:45 final size:44
Alignment explanation
Indices: 22066877--22067216 Score: 252
Period size: 45 Copynumber: 7.8 Consensus size: 44
22066867 TCGCATCTAC
22066877 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAT-AGCAA
* * * *
22066920 GCCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAGATGGCGAA
1 -TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTCAAGATAGC-AA
* * * **
22066966 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGATAGCAA
* ** * *
22067010 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGA-TTAAAATCA-CAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAT-AGCA-A
* * * **
22067054 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TC--G-TATCGGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGATAGC-AA
* * * *
22067094 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGATAGC-AA
* *
22067139 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAATCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGATAGCAA
* * * *
22067183 GTCTTATCCCCCTGAAATTTCAGTGGGGCAGACT
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
22067217 AAATAAACAA
Statistics
Matches: 237, Mismatches: 42, Indels: 33
0.76 0.13 0.11
Matches are distributed among these distances:
39 1 0.00
40 22 0.09
41 7 0.03
42 1 0.00
43 14 0.06
44 80 0.34
45 106 0.45
46 6 0.03
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGATAGCAA
Found at i:22067059 original size:133 final size:127
Alignment explanation
Indices: 22066880--22067177 Score: 291
Period size: 133 Copynumber: 2.3 Consensus size: 127
22066870 CATCTACTCT
* *
22066880 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGCCTTATC-CTCCTGAAGTTGTAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGCCTTATCTCT-CTGAAGTTGCAGA
22066944 GAGGCAGA-CTGAAGAT-GGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAA
64 GA-GCAGATC-G--GATCGG-G--TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAA
22067007 TAATCC
122 TAATCC
** * * *
22067013 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAA-AATCACAGATCTTATCTCTCTGAAGTTGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG-CCTTATCTCTCTGAAGTTGCAGA
* * *** * * *
22067077 GAGCAGATCGTATCGGGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGACCCAAG-AAAGCGAGTC
64 GAGCAGATCGGATCGGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAA--TAATC
*
22067141 T
127 C
22067142 TATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAA
22067178 ATCAAGTCTT
Statistics
Matches: 137, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
127 2 0.01
128 33 0.24
129 30 0.22
130 5 0.04
131 8 0.06
132 8 0.06
133 49 0.36
134 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (127 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGCCTTATCTCTCTGAAGTTGCAGAGA
GCAGATCGGATCGGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAATAATCC
Found at i:22067791 original size:19 final size:19
Alignment explanation
Indices: 22067767--22067820 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
22067757 AATCTTCAAG
22067767 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
22067786 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22067805 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22067821 AGATATGATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22067796 original size:36 final size:36
Alignment explanation
Indices: 22067756--22067827 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
22067746 TATGGAAACA
22067756 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
22067792 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
22067828 ATCTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:22067811 original size:38 final size:40
Alignment explanation
Indices: 22067767--22067843 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
22067757 AATCTTCAAG
22067767 GATATGCAATCTT-AGATATGAT-ATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATCATGTAATCTTAGATAT
*
22067805 GATATGCAATCTTAGAAGATATGATCTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATCATGTAATCTTAGA
22067844 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 9 0.26
42 12 0.35
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATCATGTAATCTTAGATAT
Found at i:22068071 original size:23 final size:23
Alignment explanation
Indices: 22068027--22068071 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
22068017 TCTTATTTTG
*
22068027 TTGATTTGTATATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
22068050 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
22068072 CAAATCTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:22071607 original size:27 final size:27
Alignment explanation
Indices: 22071571--22071626 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
22071561 TAAGCTGAAC
* * *
22071571 AAACACATATGTGAACTCAGTTTGCCA
1 AAACACATATGCGAACACAGTTCGCCA
22071598 AAACACATATGCGAACACAGTTCGCCA
1 AAACACATATGCGAACACAGTTCGCCA
22071625 AA
1 AA
22071627 CATAACTATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.25, G:0.14, T:0.20
Consensus pattern (27 bp):
AAACACATATGCGAACACAGTTCGCCA
Found at i:22072991 original size:14 final size:14
Alignment explanation
Indices: 22072972--22073001 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
22072962 AGCATTTATC
22072972 AAAAAAATTAT-AT
1 AAAAAAATTATAAT
22072985 AAAAAAATTATAAT
1 AAAAAAATTATAAT
22072999 AAA
1 AAA
22073002 CCATTTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAAAAATTATAAT
Found at i:22079141 original size:43 final size:43
Alignment explanation
Indices: 22079090--22079310 Score: 307
Period size: 43 Copynumber: 5.1 Consensus size: 43
22079080 ACTAAACGTC
22079090 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCA
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCA
* * * * *
22079133 GCTGAAGACCATGACCTTTAACAGCGCTTTTCCCATAAACGCC
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCA
* * *
22079176 GCTAAAGACCATGACCTTTAGCGGCGCTTCTCCCACAAATGCC
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCA
* *
22079219 GCTGAAGACCATGACCTTTAGCGGCACTTTTCCCACAAACGCA
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCA
* * ** *
22079262 GCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCC
1 GCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCA
22079305 GCTAAA
1 GCTAAA
22079311 AGTACAATTC
Statistics
Matches: 155, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 155 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (43 bp):
GCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCA
Found at i:22079325 original size:43 final size:42
Alignment explanation
Indices: 22079061--22079310 Score: 160
Period size: 43 Copynumber: 5.8 Consensus size: 42
22079051 GCGTAGCTAA
* ** * *
22079061 CTTTAGCGGCATTTTTATAACTAAACGTC-GCTAAAGACCATGAC
1 CTTTAGCGGCACTTTTACCAC-AAACG-CAGCTAAAGAACAT-AT
* * * * *
22079105 CTTTAGCGGCGCTTTTCCCACAAACGCAGCTGAAGACCATGAC
1 CTTTAGCGGCACTTTTACCACAAACGCAGCTAAAGAACAT-AT
* * * * * * * *
22079148 CTTTAACAGCGCTTTTCCCATAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCACTTTTACCACAAACGCAGCTAAAGAACAT-AT
* * * * * * * *
22079191 CTTTAGCGGCGCTTCTCCCACAAATGCCGCTGAAGACCATGAC
1 CTTTAGCGGCACTTTTACCACAAACGCAGCTAAAGAACAT-AT
*
22079234 CTTTAGCGGCACTTTTCCCACAAACGCAGCTAAAGAACATGAT
1 CTTTAGCGGCACTTTTACCACAAACGCAGCTAAAGAACAT-AT
* * *
22079277 CTTTAGCGGCGCTTTTATCACAAACGCCGCTAAA
1 CTTTAGCGGCACTTTTACCACAAACGCAGCTAAA
22079311 AGTACAATTC
Statistics
Matches: 177, Mismatches: 28, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
42 1 0.01
43 160 0.90
44 16 0.09
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (42 bp):
CTTTAGCGGCACTTTTACCACAAACGCAGCTAAAGAACATAT
Found at i:22081079 original size:15 final size:15
Alignment explanation
Indices: 22081059--22081088 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22081049 TTCCTGCAAT
22081059 TTTAAAACAATAAAA
1 TTTAAAACAATAAAA
*
22081074 TTTAAAAGAATAAAA
1 TTTAAAACAATAAAA
22081089 AAACAAAAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (15 bp):
TTTAAAACAATAAAA
Found at i:22082382 original size:24 final size:24
Alignment explanation
Indices: 22082350--22082409 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
22082340 CGTTGAAGGC
22082350 AGAAATAGATAACTTAAACAAATT
1 AGAAATAGATAACTTAAACAAATT
* *
22082374 AGAAATAGATAAATTAAACAACTT
1 AGAAATAGATAACTTAAACAAATT
22082398 AG-AATAGATAAC
1 AGAAATAGATAAC
22082410 AGTAGTCTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 9 0.27
24 24 0.73
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.23
Consensus pattern (24 bp):
AGAAATAGATAACTTAAACAAATT
Found at i:22083825 original size:65 final size:65
Alignment explanation
Indices: 22083658--22083908 Score: 277
Period size: 65 Copynumber: 3.6 Consensus size: 65
22083648 TATTTTTTTA
** * ****
22083658 TAAAATTATTTTTTTGTAACGTTTTTTATAAAAACGCCACTAAATGTTTTGCTAGACTATTTTTT
1 TAAAATTA-TTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTTTGCT--A-TATAAAAT
* *
22083723 AAAG
62 GACG
22083727 TAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGACG
1 TAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGACG
*
22083792 TAAAATTATTTTTTGTGGCATTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGACT
1 TAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGAC-
22083857 ATTTTTTAAAG
65 ----------G
22083868 TAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTA
1 TAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTA
22083909 TTGCTTACCT
Statistics
Matches: 160, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
65 69 0.43
66 1 0.01
68 41 0.26
69 8 0.05
76 41 0.26
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (65 bp):
TAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGACG
Found at i:22083905 original size:141 final size:134
Alignment explanation
Indices: 22083658--22083908 Score: 387
Period size: 141 Copynumber: 1.8 Consensus size: 134
22083648 TATTTTTTTA
*
22083658 TAAAATTATTTTTTTGTAACGTTTTTTATAAAAACGCCACTAAATGTTTTGCTAGACTATTTTTT
1 TAAAATTATTTTTTTGTAACATTTTTTATAAAAACGCCACTAAATGTTTTGCTAGACTATTTTTT
22083723 AAAGTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAAT
66 AAAGTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAAT
22083788 GACG
131 GACG
** *
22083792 TAAAATTA-TTTTTTGTGGCATTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGAC
1 TAAAATTATTTTTTTGTAACATTTTTTATAAAAACGCCACTAAATGTTTTGC----T---A-GAC
22083856 TATTTTTTAAAGTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTA
58 TATTTTTTAAAGTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTA
22083909 TTGCTTACCT
Statistics
Matches: 105, Mismatches: 4, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
133 39 0.37
134 8 0.08
137 1 0.01
140 1 0.01
141 56 0.53
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (134 bp):
TAAAATTATTTTTTTGTAACATTTTTTATAAAAACGCCACTAAATGTTTTGCTAGACTATTTTTT
AAAGTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAAT
GACG
Found at i:22084146 original size:116 final size:116
Alignment explanation
Indices: 22083924--22084231 Score: 514
Period size: 116 Copynumber: 2.7 Consensus size: 116
22083914 TACCTTTTGC
*
22083924 AAACGCCGCTAAATATTTTGCTATATAAAATGACTATTTTTTAAAGT-AAATTA-TTTTTGTGGT
1 AAACGCCGCTAAATGTTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTTTTTGTGG-
** * *
22083987 ATTTTTTTATAAAAACACCGCTATTGCTTACCTTTTGCGGCGTTTTTTATGA
65 CGTTTTTTATAAAAACACCACTATTGCTTACCTTTTGCGGCGTTTTTTATAA
22084039 AAACGCCGCTAAATGTTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTTTTTGTGGC
1 AAACGCCGCTAAATGTTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTTTTTGTGGC
*
22084104 GTTTTTTATAAAAACGCCACTATTGCTTACCTTTTGCGGCGTTTTTTATAA
66 GTTTTTTATAAAAACACCACTATTGCTTACCTTTTGCGGCGTTTTTTATAA
* *
22084155 AAACGCCACTAAATGTTTTGCTATATAAAATGGCTATTTTTTAAAGTAAAATTATTTTTTGTGGC
1 AAACGCCGCTAAATGTTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTTTTTGTGGC
22084220 G-TTTTTATAAAA
66 GTTTTTTATAAAA
22084232 CGCTGCTAAA
Statistics
Matches: 183, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
115 57 0.31
116 117 0.64
117 9 0.05
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (116 bp):
AAACGCCGCTAAATGTTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTTTTTGTGGC
GTTTTTTATAAAAACACCACTATTGCTTACCTTTTGCGGCGTTTTTTATAA
Found at i:22084245 original size:74 final size:69
Alignment explanation
Indices: 22084135--22084293 Score: 205
Period size: 68 Copynumber: 2.2 Consensus size: 69
22084125 ATTGCTTACC
*
22084135 TTTTGCGGCGTTTTTTATAAAAACGCCACTAAATGTTTTGCTATATAAAATG-GCTATTTTTTAA
1 TTTTGTGGCG-TTTTTATAAAAACGCCACTAAATGTTTTGC----T---ATGCGCTATTTTTTAA
22084199 AGTAAAATTATT
58 AGTAAAATTATT
**
22084211 TTTTGTGGCGTTTTTAT-AAAACGCTGCTAAATGTTTTGCTATGCGCTATTTTTTAAAGTAAAAT
1 TTTTGTGGCGTTTTTATAAAAACGCCACTAAATGTTTTGCTATGCGCTATTTTTTAAAGTAAAAT
22084275 TATT
66 TATT
22084279 TTTTGTGGCGTTTTT
1 TTTTGTGGCGTTTTT
22084294 CTTGAAAACG
Statistics
Matches: 79, Mismatches: 3, Indels: 10
0.86 0.03 0.11
Matches are distributed among these distances:
67 3 0.04
68 39 0.49
70 1 0.01
74 20 0.25
75 7 0.09
76 9 0.11
ACGTcount: A:0.27, C:0.10, G:0.16, T:0.47
Consensus pattern (69 bp):
TTTTGTGGCGTTTTTATAAAAACGCCACTAAATGTTTTGCTATGCGCTATTTTTTAAAGTAAAAT
TATT
Found at i:22084781 original size:16 final size:17
Alignment explanation
Indices: 22084751--22084784 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
22084741 ATCCGTATCA
22084751 ATTTATTATATTTTTTT
1 ATTTATTATATTTTTTT
22084768 ATTTATTA-ATTTTTTT
1 ATTTATTATATTTTTTT
22084784 A
1 A
22084785 AATCTAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
ATTTATTATATTTTTTT
Found at i:22085372 original size:89 final size:89
Alignment explanation
Indices: 22085192--22085373 Score: 215
Period size: 89 Copynumber: 2.0 Consensus size: 89
22085182 CCCCAAACAA
* * *
22085192 CTAACCTCTAAACCTTATTTAATATAAAAAATAAAAAACACTAATTAATCTAAATCATAAACCCT
1 CTAACCTCTAAACATTACTTAATATAAAAAATAAAAAACACTAATTAATCTAAACCATAAACCCT
* *
22085257 AACCCGACCCTGAATCCCTAACCC
66 AACCCGACCCTGAATCCATAAACC
* * ** *
22085281 CTAACC-CTTAAACATTACTTAATATATAAATTAAAATGCACTAATTAATCTAAACCCTAAACCC
1 CTAACCTC-TAAACATTACTTAATATAAAAAATAAAAAACACTAATTAATCTAAACCATAAACCC
* * *
22085345 TAACCTGA-CATCGAATCTATAAACC
65 TAACCCGACCCT-GAATCCATAAACC
22085370 CTAA
1 CTAA
22085374 ATCCTTAACT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
88 3 0.04
89 75 0.96
ACGTcount: A:0.45, C:0.26, G:0.03, T:0.26
Consensus pattern (89 bp):
CTAACCTCTAAACATTACTTAATATAAAAAATAAAAAACACTAATTAATCTAAACCATAAACCCT
AACCCGACCCTGAATCCATAAACC
Found at i:22085387 original size:7 final size:7
Alignment explanation
Indices: 22085366--22085430 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
22085356 CGAATCTATA
*
22085366 AACCCTA
1 AACCCTT
*
22085373 AATCCTT
1 AACCCTT
*
22085380 AACTCTT
1 AACCCTT
22085387 AA-CCTCT
1 AACCCT-T
22085394 AACCCTT
1 AACCCTT
*
22085401 AACCCCT
1 AACCCTT
22085408 AACCCTT
1 AACCCTT
*
22085415 AACCCAT
1 AACCCTT
*
22085422 AAACCTT
1 AACCCTT
22085429 AA
1 AA
22085431 ATCACAACCC
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
6 2 0.04
7 41 0.89
8 3 0.07
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (7 bp):
AACCCTT
Found at i:22085419 original size:14 final size:14
Alignment explanation
Indices: 22085379--22085430 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
22085369 CCTAAATCCT
* *
22085379 TAACTCTTAACCTC
1 TAACCCTTAACCCC
22085393 TAACCCTTAACCCC
1 TAACCCTTAACCCC
*
22085407 TAACCCTTAACCCA
1 TAACCCTTAACCCC
*
22085421 TAAACCTTAA
1 TAACCCTTAA
22085431 ATCACAACCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.27
Consensus pattern (14 bp):
TAACCCTTAACCCC
Found at i:22085704 original size:4 final size:4
Alignment explanation
Indices: 22085695--22085722 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
22085685 AAGTTTTATT
22085695 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
22085723 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:22090729 original size:42 final size:41
Alignment explanation
Indices: 22090680--22090834 Score: 229
Period size: 41 Copynumber: 3.8 Consensus size: 41
22090670 GTTTTTGCGA
* ** *
22090680 CGCTTTTTTAAAAATGCCGCTAAAGCCCCGAGCATTAGCGG
1 CGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTAGCGG
*
22090721 CGCTTTTTTAAAAACGCCGCTAAAGATCTGAGTATTAGCGG
1 CGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTAGCGG
* * *
22090762 CGCTTTTTCAAAAACGTCGCTAAAGATATGAGCATTAGCGG
1 CGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTAGCGG
22090803 CGCTTTTTTTAAAAACGCCGCTAAAGATCTGA
1 CGC-TTTTTTAAAAACGCCGCTAAAGATCTGA
22090835 AAGGTAGAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
41 76 0.75
42 25 0.25
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (41 bp):
CGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTAGCGG
Found at i:22093940 original size:394 final size:400
Alignment explanation
Indices: 22093176--22093985 Score: 1463
Period size: 394 Copynumber: 2.0 Consensus size: 400
22093166 GATACATAAA
*
22093176 TAAA-TTATATTAATACTTCTTGGCCTTCACTTTTTATAAAATAAATATATTATAATAATTTTAT
1 TAAATTTA-ATTAATACTTCTTGGCCTTAACTTTTTATAAAATAAATATATTATAATAATTTTAT
22093240 AACATGTAAACTGTTTTTGCAATAAACTTTTAGCTATAACTTTAAAAAAATTAGGATTTAAATAA
65 AACATGTAAACTGTTTTTGCAATAAACTTTTAGCTATAACTTTAAAAAAATTAGGATTTAAATAA
22093305 TATAACTCTTTATTATAATTTTATAAAATACATATAAGTTATTTTATAATATATATTTTTAAGAT
130 TATAACTCTTTATTATAATTTTATAAAATACATATAAGTTATTTTATAATATATA---TTAAGA-
22093370 TTATAATATAAAATTTTTTGGCTACAACCATCCTAAACACTCATACGTGTTTATATTTATAATAT
191 TTATAATAT---ATTTTTTGGCTACAACCATCCTAAACACTCATACGTGTTTATATTTATAATAT
*
22093435 AAAAAATTAGGGAGGGATCCACTTACACAGTATAAAAAATAAAGTAGTTTTGCGCACACCTGTAA
253 AAAAAATTAGGGAGGGATCCACTTACACAGTATAAAAAATAAAGTAGTTTTGCACACACCTGTAA
22093500 CTATTTATATGATTAATATTTTAACGATCCAACCATTATATTTCATGGTCTATTCATGTATATCA
318 CTATTTATATGATTAATATTTTAACGATCCAACCATTATATTTCATGGTCTATTCATGTATATCA
22093565 TGCATGTCAAATTTGATG
383 TGCATGTCAAATTTGATG
*
22093583 TAAATTTAATTAATACTTCTTGGCCTTAACTTTTTATAAAATAAATATTTTATAATAATTTTATA
1 TAAATTTAATTAATACTTCTTGGCCTTAACTTTTTATAAAATAAATATATTATAATAATTTTATA
22093648 ACATGTAAACTGTTTTTGCAATAAACTTTTAGCTATAACTTTAAAAAAATTAGGATTTAAATAAT
66 ACATGTAAACTGTTTTTGCAATAAACTTTTAGCTATAACTTTAAAAAAATTAGGATTTAAATAAT
*
22093713 ATGACTCTTTATTATAATTTTATAAAATACATATAAGTTATTTTATAATATATA-T-A-A-TATA
131 ATAACTCTTTATTATAATTTTATAAAATACATATAAGTTATTTTATAATATATATTAAGATTATA
22093774 A-AT-TTTTTTGGCTACAACCATCCTAAACACTCATACGTGTTTATATTTATAATATAAAAAATT
196 ATATATTTTTTGGCTACAACCATCCTAAACACTCATACGTGTTTATATTTATAATATAAAAAATT
22093837 AGGGAGGGATCCACTTACACAGTATAAAAAATAAAGTAGTTTTGCACACACCTGTAACTATTTAT
261 AGGGAGGGATCCACTTACACAGTATAAAAAATAAAGTAGTTTTGCACACACCTGTAACTATTTAT
22093902 ATGATTAATATTTTAACGATCCAACCATTATATTTCATGGTCTATTCATGTATATCATGCATGTC
326 ATGATTAATATTTTAACGATCCAACCATTATATTTCATGGTCTATTCATGTATATCATGCATGTC
22093967 AAATTTGATG
391 AAATTTGATG
22093977 TAAATTTAA
1 TAAATTTAA
22093986 AACTTTAATT
Statistics
Matches: 398, Mismatches: 4, Indels: 15
0.95 0.01 0.04
Matches are distributed among these distances:
394 208 0.52
398 2 0.01
399 5 0.01
401 1 0.00
402 1 0.00
403 1 0.00
407 177 0.44
408 3 0.01
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (400 bp):
TAAATTTAATTAATACTTCTTGGCCTTAACTTTTTATAAAATAAATATATTATAATAATTTTATA
ACATGTAAACTGTTTTTGCAATAAACTTTTAGCTATAACTTTAAAAAAATTAGGATTTAAATAAT
ATAACTCTTTATTATAATTTTATAAAATACATATAAGTTATTTTATAATATATATTAAGATTATA
ATATATTTTTTGGCTACAACCATCCTAAACACTCATACGTGTTTATATTTATAATATAAAAAATT
AGGGAGGGATCCACTTACACAGTATAAAAAATAAAGTAGTTTTGCACACACCTGTAACTATTTAT
ATGATTAATATTTTAACGATCCAACCATTATATTTCATGGTCTATTCATGTATATCATGCATGTC
AAATTTGATG
Found at i:22097741 original size:4 final size:4
Alignment explanation
Indices: 22097732--22097787 Score: 112
Period size: 4 Copynumber: 14.0 Consensus size: 4
22097722 CAAACCAACT
22097732 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
22097780 CATA CATA
1 CATA CATA
22097788 TATAATGAGC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 52 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:22100298 original size:20 final size:21
Alignment explanation
Indices: 22100273--22100314 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22100263 GATTCTTTTT
* *
22100273 ATAAAAT-ATTATATTTTTAA
1 ATAAAATAATCATATTTATAA
22100293 ATAAAATAATCATATTTATAA
1 ATAAAATAATCATATTTATAA
22100314 A
1 A
22100315 ATTTTAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
ATAAAATAATCATATTTATAA
Found at i:22100603 original size:12 final size:12
Alignment explanation
Indices: 22100586--22100612 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22100576 AATCATTCGC
22100586 TAAAATAAATAA
1 TAAAATAAATAA
22100598 TAAAATAAATAA
1 TAAAATAAATAA
22100610 TAA
1 TAA
22100613 TTAATTGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
TAAAATAAATAA
Found at i:22101956 original size:15 final size:15
Alignment explanation
Indices: 22101932--22101965 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22101922 ATATTTTTAA
*
22101932 AAAAGGGAATAAAAT
1 AAAAGCGAATAAAAT
*
22101947 AAAAGCGAATAACAT
1 AAAAGCGAATAAAAT
22101962 AAAA
1 AAAA
22101966 TTAGTACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.06, G:0.15, T:0.12
Consensus pattern (15 bp):
AAAAGCGAATAAAAT
Found at i:22102232 original size:15 final size:15
Alignment explanation
Indices: 22102212--22102241 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
22102202 TGAAGTTAAT
22102212 TATATATATATACAC
1 TATATATATATACAC
22102227 TATATATATATACAC
1 TATATATATATACAC
22102242 GTGAACAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (15 bp):
TATATATATATACAC
Found at i:22104270 original size:132 final size:132
Alignment explanation
Indices: 22104101--22104445 Score: 501
Period size: 132 Copynumber: 2.6 Consensus size: 132
22104091 AGATATATCG
* * *
22104101 TCTTCGATCTATGCTCCACTACTTCTTAGGGAGATAAGATTTGTAATTTTCAACCTATTCCACTG
1 TCTTCGATC--TGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTG
* *
22104166 CCAACCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCC
64 CCAACCAGGGAGATAGAATTACTAGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATCC
22104231 ACCA
129 ACCA
* * * *
22104235 TCTTCGGTCTGCTTCACTACTACTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCC
1 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTGCC
* * * *
22104300 AACTAGGGAGATAGAATTACTAGCTTCAATATACTCCACTGTAACCTCGGGGAGGTAAAATCCTC
66 AACCAGGGAGATAGAATTACTAGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATCCAC
22104365 CA
131 CA
* * * **
22104367 TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAACCTATTCCACTGTT
1 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTGCC
*
22104432 GACCAGGGAGATAG
66 AACCAGGGAGATAG
22104446 GATTTGTGGC
Statistics
Matches: 187, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
132 179 0.96
134 8 0.04
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTGCC
AACCAGGGAGATAGAATTACTAGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATCCAC
CA
Found at i:22104533 original size:128 final size:128
Alignment explanation
Indices: 22104364--22104964 Score: 909
Period size: 128 Copynumber: 4.7 Consensus size: 128
22104354 GTAAAATCCT
* *
22104364 CCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTT-CAACCTATTCCAC
1 CCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAAT-TTCCAACCTATTCCAC
* * *
22104428 TGTTGACCAGGGAGATAGGATTTGTGGCTTAAATCTGATTCCTTACTCTTGAAGATAAGATTCG
65 TGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCG
* * * *
22104492 CCATCTTCGATCTGCTCTGCTACTGCTTAGAGAGACAAGATCTGTAATTTCCAACCCATTTCACT
1 CCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACT
* * * *
22104557 GCTGACCAGGGATATAGGACTTGTGACTTAAATCTGCTTCCTTACTCTTGAAGATTAGATTCT
66 GCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCG
* * *
22104620 CCGTCTTCGATTTGCTCCGCTACTACTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACT
1 CCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACT
* *
22104685 ACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGA-TCAA
66 GCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTC-G
** * * *
22104748 CTGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCCAATCTATTCCACT
1 CCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACT
* *
22104813 GCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCTTTACTCTTGAAAATAAGATTCG
66 GCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCG
* * * *
22104876 CCATCTTCGATCTGCTCTGCTACTGATTAAGGAGACAAGATCCGTAATTTCCAACCTATTCCACT
1 CCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACT
22104941 GCTGACCAGGGAGATAGGACTTGT
66 GCTGACCAGGGAGATAGGACTTGT
22104965 TTTCGATCTG
Statistics
Matches: 426, Mismatches: 44, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
127 4 0.01
128 420 0.99
129 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (128 bp):
CCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACT
GCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCG
Found at i:22106278 original size:7 final size:7
Alignment explanation
Indices: 22106258--22106304 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
22106248 TTAGCCTCTC
22106258 CATTTTT
1 CATTTTT
*
22106265 ACTTTTTT
1 -CATTTTT
22106273 CATTTTTT
1 CA-TTTTT
22106281 CATTTTT
1 CATTTTT
22106288 CA-TTTT
1 CATTTTT
*
22106294 CGTTTTT
1 CATTTTT
22106301 CATT
1 CATT
22106305 CATTTTTTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
6 5 0.15
7 15 0.45
8 13 0.39
ACGTcount: A:0.13, C:0.15, G:0.02, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:22106278 original size:15 final size:15
Alignment explanation
Indices: 22106258--22106293 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
22106248 TTAGCCTCTC
*
22106258 CATTTTTACTTTTTT
1 CATTTTTACATTTTT
*
22106273 CATTTTTTCATTTTT
1 CATTTTTACATTTTT
22106288 CATTTT
1 CATTTT
22106294 CGTTTTTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (15 bp):
CATTTTTACATTTTT
Found at i:22107269 original size:12 final size:12
Alignment explanation
Indices: 22107254--22107288 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
22107244 TTTCTTCTTT
22107254 TTTTGTTTTTGA
1 TTTTGTTTTTGA
*
22107266 TTTTGATTTTGA
1 TTTTGTTTTTGA
22107278 TTTT-TTTTTGA
1 TTTTGTTTTTGA
22107289 ATTGGATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.11, C:0.00, G:0.14, T:0.74
Consensus pattern (12 bp):
TTTTGTTTTTGA
Found at i:22113441 original size:16 final size:17
Alignment explanation
Indices: 22113409--22113441 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22113399 ATAATTAATT
22113409 TTAAAATTTTAAATATA
1 TTAAAATTTTAAATATA
22113426 TTAAAATTTT-AATATA
1 TTAAAATTTTAAATATA
22113442 CTTATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAAAATTTTAAATATA
Found at i:22122994 original size:56 final size:57
Alignment explanation
Indices: 22122908--22123021 Score: 176
Period size: 56 Copynumber: 2.0 Consensus size: 57
22122898 GAAGAATTCC
* * *
22122908 TATAATCAAGGATTGACTCAATCCTAAAGAAAGAAATA-AATAAAATCTGATCAAAT
1 TATAACCAAGGATTGACTCAATCCTAAAGAAAGAAAAATAATAAAATCTCATCAAAT
**
22122964 TATAACCAAGGATTGACTCCGTCCTAAAGAAAGAAAAATAATAAAATCTCATCAAAT
1 TATAACCAAGGATTGACTCAATCCTAAAGAAAGAAAAATAATAAAATCTCATCAAAT
22123021 T
1 T
22123022 TGTCTCAATC
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
56 34 0.65
57 18 0.35
ACGTcount: A:0.50, C:0.15, G:0.11, T:0.25
Consensus pattern (57 bp):
TATAACCAAGGATTGACTCAATCCTAAAGAAAGAAAAATAATAAAATCTCATCAAAT
Found at i:22125726 original size:13 final size:13
Alignment explanation
Indices: 22125708--22125732 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22125698 TAGGGAGGGA
22125708 AAAAAGAAAGAAC
1 AAAAAGAAAGAAC
22125721 AAAAAGAAAGAA
1 AAAAAGAAAGAA
22125733 AGTAAACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAGAAC
Found at i:22134071 original size:51 final size:51
Alignment explanation
Indices: 22133995--22134182 Score: 211
Period size: 51 Copynumber: 3.7 Consensus size: 51
22133985 TGCCTATAAA
* *
22133995 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATA-GATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-AGGAT-ATGGT
* * * *
22134046 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGCTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAGGATATGGT
* * * * * *
22134097 CACGTGTGTAGGACTATGTCCAGGCTACTACGTGAACCAGAAAG-TTTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAGGATATGGT
* *
22134147 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
22134183 TCGAATGATA
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
50 36 0.31
51 78 0.66
52 4 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAGGATATGGT
Found at i:22134172 original size:101 final size:102
Alignment explanation
Indices: 22133995--22134182 Score: 272
Period size: 101 Copynumber: 1.9 Consensus size: 102
22133985 TGCCTATAAA
* * * * * *
22133995 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAGATAATGGTCACGTGTGTAGTAC
1 CACGTGTGTAGGACTAAGTCCAGGCTACTACGTGAACCGAAAGATAATGATCACGTGTGTAGTAC
*
22134060 TATGTGCAGGCTACTATGTGTACCGGAAGGCTTTGGT
66 TATGTGAAGGCTACTATGTGTACCGGAAGGCTTTGGT
* *
22134097 CACGTGTGTAGGACTATGTCCAGGCTACTACGTGAACCAGAAAG-T-TTGATCACGTGTGTAGTA
1 CACGTGTGTAGGACTAAGTCCAGGCTACTACGTGAACC-GAAAGATAATGATCACGTGTGTAGTA
22134160 CTATGTGAAGGCTACTATGTGTA
65 CTATGTGAAGGCTACTATGTGTA
22134183 TCGAATGATA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
101 38 0.50
102 34 0.45
103 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGGACTAAGTCCAGGCTACTACGTGAACCGAAAGATAATGATCACGTGTGTAGTAC
TATGTGAAGGCTACTATGTGTACCGGAAGGCTTTGGT
Found at i:22135757 original size:79 final size:79
Alignment explanation
Indices: 22135626--22135784 Score: 309
Period size: 79 Copynumber: 2.0 Consensus size: 79
22135616 AATGTTTAAA
22135626 ATGTGTCATATCTTTACTGAAAGATGCAACATATCATTGGTGGATAACATTAGTATCTGTGGTTC
1 ATGTGTCATATCTTTACTGAAAGATGCAACATATCATTGGTGGATAACATTAGTATCTGTGGTTC
22135691 CGAAAGAAAGGGTT
66 CGAAAGAAAGGGTT
22135705 ATGTGTCATATCTTTACTGAAAGATGCAACATATCATTGGTGGATAACATTAGTATCTGTGGTTC
1 ATGTGTCATATCTTTACTGAAAGATGCAACATATCATTGGTGGATAACATTAGTATCTGTGGTTC
*
22135770 CGAAAGAAAGTGTT
66 CGAAAGAAAGGGTT
22135784 A
1 A
22135785 CATGGGATTT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (79 bp):
ATGTGTCATATCTTTACTGAAAGATGCAACATATCATTGGTGGATAACATTAGTATCTGTGGTTC
CGAAAGAAAGGGTT
Found at i:22141385 original size:51 final size:51
Alignment explanation
Indices: 22141309--22141496 Score: 211
Period size: 51 Copynumber: 3.7 Consensus size: 51
22141299 TGCCTATAAA
* *
22141309 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGAT-ATGGT
* * * *
22141360 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGA-AGGCTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATA-GATATGGT
* * * * * * *
22141411 CACATGTGTAGGACTATGTCCAGGCTACTACGTGAACCAGAAAG-TTTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGATATGGT
*
22141461 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
22141497 TCGAATAATA
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
50 36 0.31
51 76 0.65
52 5 0.04
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGATATGGT
Found at i:22147120 original size:17 final size:17
Alignment explanation
Indices: 22147084--22147144 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
22147074 ATAAAAGGAG
*
22147084 ATTTGGAGGTTTTAAGA
1 ATTTAGAGGTTTTAAGA
*
22147101 ATTTTGAGGTTTT-AGAA
1 ATTTAGAGGTTTTAAG-A
22147118 ATTTAGAGGATTTTTAGAGA
1 ATTTAGAGG--TTTTA-AGA
22147138 A-TTAGAG
1 ATTTAGAG
22147145 TTTAAAGAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
16 2 0.05
17 21 0.57
19 10 0.27
20 2 0.05
21 2 0.05
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (17 bp):
ATTTAGAGGTTTTAAGA
Found at i:22147563 original size:13 final size:15
Alignment explanation
Indices: 22147545--22147576 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
22147535 TTTAAAGAAA
22147545 TTTAAAT-ATCAA-T
1 TTTAAATAATCAAGT
22147558 TTTAAATAATCAAGT
1 TTTAAATAATCAAGT
22147573 TTTA
1 TTTA
22147577 CTACTGGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 5 0.29
15 5 0.29
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (15 bp):
TTTAAATAATCAAGT
Found at i:22150329 original size:31 final size:31
Alignment explanation
Indices: 22150286--22150346 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
22150276 ACCAACTGCC
*
22150286 GTGTTAGGTTTTCTTGCTCAATTAACTAGTT
1 GTGTCAGGTTTTCTTGCTCAATTAACTAGTT
22150317 GTGTCAGGTTTTCTTGCTCAATTAACTAGT
1 GTGTCAGGTTTTCTTGCTCAATTAACTAGT
22150347 CAATACCCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.46
Consensus pattern (31 bp):
GTGTCAGGTTTTCTTGCTCAATTAACTAGTT
Found at i:22155349 original size:67 final size:67
Alignment explanation
Indices: 22155277--22155435 Score: 255
Period size: 67 Copynumber: 2.4 Consensus size: 67
22155267 CCATATACTA
*
22155277 CCATAGTCGAGCTATGGTCTTACACATCATGCCCAATGTTTAATGTCCTGGCAGACTCTATTGGT
1 CCATAGTCGAGCTATGGTCTTACACATCATGCCCAATGTTTAATGTCCTGGAAGACTCTATTGGT
22155342 TG
66 TG
* *
22155344 CCATAGTCGAGCTATGGTCTTTCACATCATGCCTAATGTTTAATGTCCTGGAAGACTCTATTGGT
1 CCATAGTCGAGCTATGGTCTTACACATCATGCCCAATGTTTAATGTCCTGGAAGACTCTATTGGT
22155409 TG
66 TG
* * * *
22155411 CCAAAGCCGATCTATAGTCTTACAC
1 CCATAGTCGAGCTATGGTCTTACAC
22155436 CTGTAATCCC
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 84 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (67 bp):
CCATAGTCGAGCTATGGTCTTACACATCATGCCCAATGTTTAATGTCCTGGAAGACTCTATTGGT
TG
Found at i:22157551 original size:56 final size:50
Alignment explanation
Indices: 22157341--22157580 Score: 187
Period size: 50 Copynumber: 4.7 Consensus size: 50
22157331 GATAATAACA
* * ** * * *
22157341 TGCCAAAGCCATGTCCCAGACATGGTTTTACATGGGATGTTTC-T-TGTAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCT-G
* * * * * ** * *
22157390 TGCCAATGTCATATCCCAGATATGCTCTTACATGGGAGTTCTCATACCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTG
* * ** *
22157440 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCTG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTG
22157490 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATATCAATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATATC--TG
* * *
22157545 ATGCCAATGCCATGTCCTAGACATGATCTTACATGG
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGG
22157581 TATCTCTTTA
Statistics
Matches: 150, Mismatches: 33, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
49 34 0.23
50 78 0.52
53 4 0.03
55 2 0.01
56 32 0.21
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTG
Found at i:22164944 original size:50 final size:51
Alignment explanation
Indices: 22164866--22165063 Score: 220
Period size: 50 Copynumber: 3.8 Consensus size: 51
22164856 TTTCTTGTAC
* * * * * **
22164866 TGCCAATGTCATATCCCAGATATAGTCTTACCTGGGAGTTCTCATAC-CGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCGG
* * **
22164916 TGCCCATGCCATGTCCCAGGCATGGTCTTACGGGGGACCTCTCAT-CTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCGG
*
22164966 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A-CTC---GG
*
22165022 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22165064 TTACCCAAAT
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 79 0.63
53 3 0.02
56 42 0.34
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCGG
Found at i:22168347 original size:11 final size:11
Alignment explanation
Indices: 22168331--22168376 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
22168321 CAAAAGAAGG
22168331 AAAAATAAAAT
1 AAAAATAAAAT
22168342 AAAAATAAAAT
1 AAAAATAAAAT
* *
22168353 -AAGATAAGAT
1 AAAAATAAAAT
22168363 AACAAAT-AAAT
1 AA-AAATAAAAT
22168374 AAA
1 AAA
22168377 TTAAAAAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
10 9 0.31
11 17 0.59
12 3 0.10
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:22169239 original size:127 final size:126
Alignment explanation
Indices: 22169007--22169660 Score: 1013
Period size: 127 Copynumber: 5.2 Consensus size: 126
22168997 GGATTAGATT
* * * *
22169007 TGGTTTTAATCTGCTCCACTGCAAATTTAGGGAGATAGGATTGATTTCTTCCGTCTGCTCTACTA
1 TGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTT-CGTCTGCTCCACTA
* *
22169072 CTGCTTAGGGAGATAAGACTTGATGCGATCTACTCAACTACTGCTTAGGGAGATAAGACCTG
65 CTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
* * *
22169134 TAGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCCTTTGTCTGCTCCACTA
1 TGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTT-CTTCGTCTGCTCCACTA
*
22169199 CTGCTTAGGGAGATAAGACTCGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
65 CTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
** * *
22169261 TGGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTCTCGTCTGCTCCACAA
1 TGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCT-TCGTCTGCTCCACTA
*
22169326 CTGCTTAGGGAGATAAGACTTGTTGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
65 CTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
* *
22169388 TGGTTTTAATCTACTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTCTCATCTGCTCCACTA
1 TGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCT-TCGTCTGCTCCACTA
* * *
22169453 CTGCTTAGGGATATAAGACTTGTTGCAATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
65 CTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
* *
22169515 TGGTTTTAATCAGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCCTTTGTCTGCTCCACTA
1 TGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTT-CTTCGTCTGCTCCACTA
* * * *
22169580 CTACTTAGGGAGATAAGACTTGAGGCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTG
65 CTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
*
22169642 TGGTTCT-ATCTGCTCCACT
1 TGGTTTTAATCTGCTCCACT
22169661 ACTTCAGGAA
Statistics
Matches: 488, Mismatches: 36, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
126 13 0.03
127 470 0.96
128 5 0.01
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (126 bp):
TGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCGTCTGCTCCACTAC
TGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTG
Found at i:22169330 original size:87 final size:84
Alignment explanation
Indices: 22169006--22169663 Score: 300
Period size: 84 Copynumber: 7.8 Consensus size: 84
22168996 GGGATTAGAT
** * * * * ** *
22169006 TTGGTTTTAATCTGCTCCACTGCAAATTTAGGGAGATAGGA-TTGATTTCTTCCGTCTGCTCTAC
1 TTGGTTTTAATCCACTCCACTAC-AACTTAGGGAGATAAGACTTGGTTTC-T-AATCTGCTCCAC
22169070 TACTGCTTAGGGAGATAAGA-C
63 TACTGCTTAGGGAGATAAGACC
* *** * * ** * *
22169091 TT-GATGCGATCTACTCAACTACTGCTTAGGGAGATAAGACCTGTAGTTT-TAATCCGCTCCACT
1 TTGGTTTTAATCCACTCCACTACAACTTAGGGAGATAAGA-CT-TGGTTTCTAATCTGCTCCACT
* ** *
22169154 GCAACTTCAGGGAGATAGGA--
64 ACTGCTT-AGGGAGATAAGACC
** ** ** * * * *
22169174 TTGGTTTCCTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGAC-TCGATGC-GATCTGCTCCAC
1 TTGG-TT--TTAATCCACTCCACTACAACTTAGGGAGATAAGACTTGGTTTCTAATCTGCTCCAC
22169237 TACTGCTTAGGGAGATAAGACC
63 TACTGCTTAGGGAGATAAGACC
* * **
22169259 TGTGGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGA-TTGGTTTCTCTCGTCTGCTCCA
1 T-TGGTTTTAATCCACTCCACTACAAC-TTAGGGAGATAAGACTTGG-TT-TCTAATCTGCTCCA
*
22169323 CAACTGCTTAGGGAGATAAGA-C
62 CTACTGCTTAGGGAGATAAGACC
*** ** ** *
22169345 TT-GTTGCGATCTGCTCCACTACTGCTTAGGGAGATAAGACCTGTGGTTT-TAATCTACTCCACT
1 TTGGTTTTAATCCACTCCACTACAACTTAGGGAGATAAGA-CT-TGGTTTCTAATCTGCTCCACT
* ** *
22169408 GCAACTTCAGGGAGATAGGA--
64 ACTGCTT-AGGGAGATAAGACC
* ** ** * *
22169428 TTGGTTTCTCTCATCTGCTCCACTACTGCTTAGGGATATAAGACTT-GTTGC-AATCTGCTCCAC
1 TTGG-TT-T-TAATCCACTCCACTACAACTTAGGGAGATAAGACTTGGTTTCTAATCTGCTCCAC
22169491 TACTGCTTAGGGAGATAAGACC
63 TACTGCTTAGGGAGATAAGACC
* * **
22169513 TGTGGTTTTAAT-CAGCTCCACTGCAACTTCAGGGAGATAGGA-TTGGTTTCCTTTGTCTGCTCC
1 T-TGGTTTTAATCCA-CTCCACTACAACTT-AGGGAGATAAGACTTGGTTT-C-TAATCTGCTCC
*
22169576 ACTACTACTTAGGGAGATAAGA-C
61 ACTACTGCTTAGGGAGATAAGACC
*** * **
22169599 TTGAG--GCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTGG-TTCT-ATCTGCTCCAC
1 TTG-GTTTTAATCCACTCCACTACAACTTAGGGAGATAAGA-CT-TGGTTTCTAATCTGCTCCAC
22169660 TACT
63 TACT
22169664 TCAGGAAAGT
Statistics
Matches: 434, Mismatches: 99, Indels: 83
0.70 0.16 0.13
Matches are distributed among these distances:
82 14 0.03
83 120 0.28
84 134 0.31
85 25 0.06
86 25 0.06
87 116 0.27
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (84 bp):
TTGGTTTTAATCCACTCCACTACAACTTAGGGAGATAAGACTTGGTTTCTAATCTGCTCCACTAC
TGCTTAGGGAGATAAGACC
Found at i:22169340 original size:43 final size:41
Alignment explanation
Indices: 22169060--22169663 Score: 385
Period size: 40 Copynumber: 14.3 Consensus size: 41
22169050 ATTTCTTCCG
* * *
22169060 TCTGCTCTACTACTGCTTAGGGAGATAAGACTT-G-ATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTTTTC-A
* * * *
22169100 TCTACTCAACTACTGCTTAGGGAGATAAGACCTGTAGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGGTTTTCA
* * ** * **
22169143 TCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTGGTTTCCTTTG
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGG-TT--TTCA
* * *
22169187 TCTGCTCCACTACTGCTTAGGGAGATAAGAC-TCG-ATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTTTTC-A
*
22169227 TCTGCTCCACTACTGCTTAGGGAGATAAGACCTGTGGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGGTTTTCA
** * ** * *
22169270 TCCACTCCACTGCAACTTTAGGGAGATAGGA-TTGGTTTCTCTCG
1 TCTGCTCCACTACTGC-TTAGGGAGATAAGACTTGG-TT-T-TCA
* *
22169314 TCTGCTCCACAACTGCTTAGGGAGATAAGACTT-G-TTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTTTTC-A
*
22169354 TCTGCTCCACTACTGCTTAGGGAGATAAGACCTGTGGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGGTTTTCA
* * ** *
22169397 TCTACTCCACTGCAACTTCAGGGAGATAGGA-TTGGTTTCTCTCA
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGG-TT-T-TCA
* *
22169441 TCTGCTCCACTACTGCTTAGGGATATAAGACTT-G-TTGCAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTTTTC-A
*
22169481 TCTGCTCCACTACTGCTTAGGGAGATAAGACCTGTGGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGGTTTTCA
* * ** * **
22169524 TCAGCTCCACTGCAACTTCAGGGAGATAGGA-TTGGTTTCCTTTG
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGACTTGG-TT--TTCA
* *
22169568 TCTGCTCCACTACTACTTAGGGAGATAAGACTTGAG---GCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTG-GTTTTC-A
* *
22169608 TCTACTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCT-A
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGGTTTTCA
22169650 TCTGCTCCACTACT
1 TCTGCTCCACTACT
22169664 TCAGGAAAGT
Statistics
Matches: 435, Mismatches: 83, Indels: 90
0.72 0.14 0.15
Matches are distributed among these distances:
39 3 0.01
40 147 0.34
41 23 0.05
42 31 0.07
43 111 0.26
44 119 0.27
45 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (41 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGTTTTCA
Found at i:22169749 original size:50 final size:51
Alignment explanation
Indices: 22169665--22169811 Score: 138
Period size: 50 Copynumber: 2.9 Consensus size: 51
22169655 TCCACTACTT
* * ** *
22169665 CAGGAAAGTACGATTCACCGTTGCGGCTTCAATCTTTTTAATTGCAAT-GT
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTTTTTAATTGCAATCGC
* * ** ** *
22169715 CGGGGAAGTAAGATTCACCGTTGTAGCTTTAATCTACTCCACTGC-ATCGC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTTTTTAATTGCAATCGC
* *
22169765 CATGGAAGTAAAATTCACCGTTGTAGCTTCAATC-TTTTATATTGCAA
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTTTTTA-ATTGCAA
22169812 CCTAAGGGGT
Statistics
Matches: 73, Mismatches: 21, Indels: 5
0.74 0.21 0.05
Matches are distributed among these distances:
49 3 0.04
50 69 0.95
51 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (51 bp):
CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTTTTTAATTGCAATCGC
Found at i:22170449 original size:108 final size:108
Alignment explanation
Indices: 22170259--22170454 Score: 295
Period size: 108 Copynumber: 1.8 Consensus size: 108
22170249 GAAAAATGCT
*
22170259 TGAAAAATATTATCAAAATGGACAAAATGAAATTTTATTGAGAGCAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTATTGAGAGCAAAGCTCTAAACAAACAAAT
*
22170324 CAATCAAGATAGCAAATTTTGCTGAGATACGAGATGAATAAGA
66 CAATCAAGATAGAAAATTTTGCTGAGATACGAGATGAATAAGA
* * * * **
22170367 TGAAAAAGATTATCACAATGGATAAGATAGAAA-TTTGTTGAGAGCAAAGCTCTAAATGAACAAA
1 TGAAAAAGATTATCAAAATGGACAAAAT-GAAATTTTATTGAGAGCAAAGCTCTAAACAAACAAA
*
22170431 TTAATCAAGATAGAAAATTTTGCT
65 TCAATCAAGATAGAAAATTTTGCT
22170455 AGAATACAAA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 74 0.95
109 4 0.05
ACGTcount: A:0.48, C:0.10, G:0.16, T:0.26
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTATTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAGAAAATTTTGCTGAGATACGAGATGAATAAGA
Found at i:22172074 original size:23 final size:23
Alignment explanation
Indices: 22172048--22172093 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
22172038 GCGTAACTGC
22172048 TGTATAGTAATAGGGTGCCCGAA
1 TGTATAGTAATAGGGTGCCCGAA
* *
22172071 TGTATAGTTATAGGGTGCGCGAA
1 TGTATAGTAATAGGGTGCCCGAA
22172094 GCCCACCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.11, G:0.33, T:0.28
Consensus pattern (23 bp):
TGTATAGTAATAGGGTGCCCGAA
Found at i:22172273 original size:25 final size:25
Alignment explanation
Indices: 22172245--22172294 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
22172235 ACTAATTACT
* *
22172245 TTATTGTCTGGTAAGCCTGCCCGAG
1 TTATTGTCCGGTAAGCCTCCCCGAG
22172270 TTATTGTCCGGTAAGCCTCCCCGAG
1 TTATTGTCCGGTAAGCCTCCCCGAG
22172295 GGAGGTATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.26, T:0.30
Consensus pattern (25 bp):
TTATTGTCCGGTAAGCCTCCCCGAG
Found at i:22175022 original size:16 final size:14
Alignment explanation
Indices: 22175001--22175040 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 14
22174991 AGGAAAAAGA
22175001 AAATAAAAATAAAAT
1 AAATAAAAAT-AAAT
22175016 AAGATAACAAATAAAT
1 AA-ATAA-AAATAAAT
22175032 AAATAAAAA
1 AAATAAAAA
22175041 ATGAAAAACG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 3 0.13
15 6 0.26
16 10 0.43
17 4 0.17
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.17
Consensus pattern (14 bp):
AAATAAAAATAAAT
Found at i:22195249 original size:40 final size:40
Alignment explanation
Indices: 22195189--22195318 Score: 233
Period size: 40 Copynumber: 3.2 Consensus size: 40
22195179 ACTGGTATTC
* *
22195189 AGCCTGCTAGACATTAAGTCTGTAAAATTCACCGGCATTA
1 AGCCTGCTAGACATTAAGTCTGTAAAGTTCACCGGCACTA
*
22195229 AGCCTGCTAGACATTTAGTCTGTAAAGTTCACCGGCACTA
1 AGCCTGCTAGACATTAAGTCTGTAAAGTTCACCGGCACTA
22195269 AGCCTGCTAGACATTAAGTCTGTAAAGTTCACCGGCACTA
1 AGCCTGCTAGACATTAAGTCTGTAAAGTTCACCGGCACTA
22195309 AGCCTGCTAG
1 AGCCTGCTAG
22195319 GAACAGGACC
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (40 bp):
AGCCTGCTAGACATTAAGTCTGTAAAGTTCACCGGCACTA
Found at i:22198879 original size:29 final size:29
Alignment explanation
Indices: 22198847--22199120 Score: 242
Period size: 29 Copynumber: 9.4 Consensus size: 29
22198837 GTTGCAACCG
* *
22198847 TCCCTTTTCATATTCGATGGTCGAAATCA
1 TCCCTTTTCATATTCGATGGTCGACACCA
*
22198876 TCCCTTTTCATTAATCGATGGTC-ATCACCA
1 TCCCTTTTCA-TATTCGATGGTCGA-CACCA
22198906 TCCCTTTTCATAGTT-GATGGTC-ATCACCA
1 TCCCTTTTCATA-TTCGATGGTCGA-CACCA
22198935 TCCCTTTTCATAGTT-GATGGTC-ATCACCA
1 TCCCTTTTCATA-TTCGATGGTCGA-CACCA
* * * * *
22198964 TCCCTTTTCATAATCGATAG-CCAAAGCTA
1 TCCCTTTTCATATTCGATGGTCGACA-CCA
* * *
22198993 TCCCTTTTCATATTCGATAGCCGA-AGCTA
1 TCCCTTTTCATATTCGATGGTCGACA-CCA
* *
22199022 TCCCTTTTCATATTTGATGGTCGTCACCA
1 TCCCTTTTCATATTCGATGGTCGACACCA
* *
22199051 TCCCTTTACATATTCGATGGTCGTCACCA
1 TCCCTTTTCATATTCGATGGTCGACACCA
**
22199080 TCCCTTTTCATAGTT-GATTATC-ATCACCA
1 TCCCTTTTCATA-TTCGATGGTCGA-CACCA
22199109 TCCCTTTTCATA
1 TCCCTTTTCATA
22199121 ATCGTTAGCC
Statistics
Matches: 214, Mismatches: 21, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
28 3 0.01
29 181 0.85
30 30 0.14
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.38
Consensus pattern (29 bp):
TCCCTTTTCATATTCGATGGTCGACACCA
Found at i:22199083 original size:87 final size:86
Alignment explanation
Indices: 22198847--22199120 Score: 295
Period size: 87 Copynumber: 3.1 Consensus size: 86
22198837 GTTGCAACCG
* ** *
22198847 TCCCTTTTCATATTCGATGGTCGAAATCATCCCTTTTCATTAATCGATGGTCATCACCATCCCTT
1 TCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCA-TAATCGATGGTCATCACCATCCCTT
* *
22198912 TTCATAGTTGATGGTCATCACCA
65 TTCATAGTTGATAGCCA-CACCA
* * * * * *
22198935 TCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAATCGATAGCCA-AAGCTATCCCTT
1 TCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATCGATGGTCATCA-CCATCCCTT
*
22198999 TTCATA-TTCGATAGCCGA-AGCTA
65 TTCATAGTT-GATAGCC-ACA-CCA
* * *
22199022 TCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTACATATTCGATGGTCGTCACCATCCCTTT
1 TCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATCGATGGTCATCACCATCCCTTT
*
22199087 TCATAGTTGATTA-TCATCACCA
66 TCATAGTTGA-TAGCCA-CACCA
22199109 TCCCTTTTCATA
1 TCCCTTTTCATA
22199121 ATCGTTAGCC
Statistics
Matches: 153, Mismatches: 24, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
86 5 0.03
87 108 0.71
88 40 0.26
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.38
Consensus pattern (86 bp):
TCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATAATCGATGGTCATCACCATCCCTTT
TCATAGTTGATAGCCACACCA
Found at i:22199097 original size:58 final size:58
Alignment explanation
Indices: 22198847--22199120 Score: 281
Period size: 58 Copynumber: 4.7 Consensus size: 58
22198837 GTTGCAACCG
* * *
22198847 TCCCTTTTCATA-TTCGATGGTCGA-AATCATCCCTTTTCATTAATCGATGGTCATCACCA
1 TCCCTTTTCATAGTT-GATGGTC-ATCACCATCCCTTTTCA-TATTCGATGGTCATCACCA
22198906 TCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAGTT-GATGGTCATCACCA
1 TCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATA-TTCGATGGTCATCACCA
* * * * * * * * *
22198964 TCCCTTTTCATAATCGATAGCCA-AAGCTATCCCTTTTCATATTCGATAGCCGA--AGCTA
1 TCCCTTTTCATAGTTGATGGTCATCA-CCATCCCTTTTCATATTCGATGGTC-ATCA-CCA
* * * *
22199022 TCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTACATATTCGATGGTCGTCACCA
1 TCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATATTCGATGGTCATCACCA
**
22199080 TCCCTTTTCATAGTTGATTATCATCACCATCCCTTTTCATA
1 TCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATA
22199121 ATCGTTAGCC
Statistics
Matches: 176, Mismatches: 29, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
57 4 0.02
58 134 0.76
59 36 0.20
60 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.38
Consensus pattern (58 bp):
TCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATATTCGATGGTCATCACCA
Found at i:22199111 original size:145 final size:146
Alignment explanation
Indices: 22198847--22199155 Score: 462
Period size: 145 Copynumber: 2.1 Consensus size: 146
22198837 GTTGCAACCG
* *
22198847 TCCCTTTTCATATTCGATGGTCGAAATCATCCCTTTTCATTAATCGATGGTCATCACCATCCCTT
1 TCCCTTTTCATATTCGATAGCCGAAATCATCCCTTTTCATTAATCGATGGTCATCACCATCCCTT
* *
22198912 TTCATAGTTGATGGTCATCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAA
66 TACATAGTTGATGGTCATCACCATCCCTTTTCATAGTTGATGATCATCACCATCCCTTTTCATAA
22198977 TCGATAGCCAAAGCTA
131 TCGATAGCCAAAGCTA
* * * *
22198993 TCCCTTTTCATATTCGATAGCCG-AAGCTATCCCTTTTCA-TATTTGATGGTCGTCACCATCCCT
1 TCCCTTTTCATATTCGATAGCCGAAATC-ATCCCTTTTCATTAATCGATGGTCATCACCATCCCT
* *
22199056 TTACATA-TTCGATGGTCGTCACCATCCCTTTTCATAGTTGATTATCATCACCATCCCTTTTCAT
65 TTACATAGTT-GATGGTCATCACCATCCCTTTTCATAGTTGATGATCATCACCATCCCTTTTCAT
*
22199120 AATCGTTAGCCAAAGCTA
129 AATCGATAGCCAAAGCTA
* *
22199138 TCCTTTTTCAAATTCGAT
1 TCCCTTTTCATATTCGAT
22199156 GATCGCCGAT
Statistics
Matches: 148, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
144 2 0.01
145 114 0.77
146 32 0.22
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.38
Consensus pattern (146 bp):
TCCCTTTTCATATTCGATAGCCGAAATCATCCCTTTTCATTAATCGATGGTCATCACCATCCCTT
TACATAGTTGATGGTCATCACCATCCCTTTTCATAGTTGATGATCATCACCATCCCTTTTCATAA
TCGATAGCCAAAGCTA
Found at i:22199112 original size:116 final size:116
Alignment explanation
Indices: 22198847--22199156 Score: 324
Period size: 116 Copynumber: 2.7 Consensus size: 116
22198837 GTTGCAACCG
* * * * * * * *
22198847 TCCCTTTTCATATTCGATGGTCGAAA-TCATCCCTTTTCATTAATCGATGGTCATCA-CCATCCC
1 TCCCTTTTCATAATCGATAG-CCAAAGCCATCCCTTTTCA-TAATCGATAGCCA-AAGCTATCCC
* *
22198910 TTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAGTTGATGGTCATCACCA
63 TTTTCATATTTGATGGTCATCACCATCCCTTTACATAGTTGATGGTCATCACCA
* * *
22198964 TCCCTTTTCATAATCGATAGCCAAAGCTATCCCTTTTCATATTCGATAGCCGAAGCTATCCCTTT
1 TCCCTTTTCATAATCGATAGCCAAAGCCATCCCTTTTCATAATCGATAGCCAAAGCTATCCCTTT
* *
22199029 TCATATTTGATGGTCGTCACCATCCCTTTACATA-TTCGATGGTCGTCACCA
66 TCATATTTGATGGTCATCACCATCCCTTTACATAGTT-GATGGTCATCACCA
* * * * * *
22199080 TCCCTTTTCATAGTTGATTA-TCATCA-CCATCCCTTTTCATAATCGTTAGCCAAAGCTATCCTT
1 TCCCTTTTCATAATCGA-TAGCCA-AAGCCATCCCTTTTCATAATCGATAGCCAAAGCTATCCCT
* *
22199143 TTTCAAATTCGATG
64 TTTCATATTTGATG
22199157 ATCGCCGATA
Statistics
Matches: 162, Mismatches: 26, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
115 3 0.02
116 127 0.78
117 32 0.20
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.37
Consensus pattern (116 bp):
TCCCTTTTCATAATCGATAGCCAAAGCCATCCCTTTTCATAATCGATAGCCAAAGCTATCCCTTT
TCATATTTGATGGTCATCACCATCCCTTTACATAGTTGATGGTCATCACCA
Found at i:22199146 original size:58 final size:58
Alignment explanation
Indices: 22198905--22199147 Score: 190
Period size: 58 Copynumber: 4.2 Consensus size: 58
22198895 GGTCATCACC
* * * * *
22198905 ATCCCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAGTT-GATGGTCATCA-CC
1 ATCCCTTTTCATAGTTGATGATCATCACCATCCCTTTTCATA-TTCGATAGCCA-AAGCT
* * * * * *
22198963 ATCCCTTTTCATAATCGAT-AGCCA-AAGCTATCCCTTTTCATATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTGATGA-TCATCA-CCATCCCTTTTCATATTCGATAGCCAAAGCT
* * * * * *** *
22199021 ATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTACATATTCGATGGTCGTCA-CC
1 ATCCCTTTTCATAGTTGATGATCATCACCATCCCTTTTCATATTCGATAG-CCAAAGCT
* * *
22199079 ATCCCTTTTCATAGTTGATTATCATCACCATCCCTTTTCATAATCGTTAGCCAAAGCT
1 ATCCCTTTTCATAGTTGATGATCATCACCATCCCTTTTCATATTCGATAGCCAAAGCT
*
22199137 ATCCTTTTTCA
1 ATCCCTTTTCA
22199148 AATTCGATGA
Statistics
Matches: 140, Mismatches: 37, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
57 6 0.04
58 131 0.94
59 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37
Consensus pattern (58 bp):
ATCCCTTTTCATAGTTGATGATCATCACCATCCCTTTTCATATTCGATAGCCAAAGCT
Found at i:22208454 original size:45 final size:45
Alignment explanation
Indices: 22208329--22208456 Score: 202
Period size: 45 Copynumber: 2.8 Consensus size: 45
22208319 TACCGGAATT
*
22208329 GAGTAAGACCATGGCTAAAAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGGCTAAAAGACGTTATGGCATCATGATTCTATC
* *
22208374 GAGTAAGACCATGGCTGAAAGACGTTATGGCATCATGATTCTTTC
1 GAGTAAGACCATGGCTAAAAGACGTTATGGCATCATGATTCTATC
** *
22208419 GAGTAAGACCATACCTAAAAGACGCTATGGCATCATGA
1 GAGTAAGACCATGGCTAAAAGACGTTATGGCATCATGA
22208457 ATCAAAGAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 76 1.00
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.24
Consensus pattern (45 bp):
GAGTAAGACCATGGCTAAAAGACGTTATGGCATCATGATTCTATC
Found at i:22208471 original size:90 final size:90
Alignment explanation
Indices: 22208329--22208495 Score: 210
Period size: 90 Copynumber: 1.9 Consensus size: 90
22208319 TACCGGAATT
** * * ** * *
22208329 GAGTAAGACCATGGCTAAAAGACGTTATGGCATCACGATTCTATCGAGTAAGACCATGGCTGAAA
1 GAGTAAGACCATACCTAAAAGACGCTATGGCATCACGAATCTAAAGAATAAGACCATAGCTGAAA
**
22208394 GACGTTATGGCATCATGATTCTTTC
66 GACACTATGGCATCATGATTCTTTC
* *
22208419 GAGTAAGACCATACCTAAAAGACGCTATGGCATCATGAATC-AAAGAAATAAGACCATAGTTGAA
1 GAGTAAGACCATACCTAAAAGACGCTATGGCATCACGAATCTAAAG-AATAAGACCATAGCTGAA
22208483 AGACACTATGGCA
65 AGACACTATGGCA
22208496 ATACAACGAA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
89 2 0.03
90 62 0.97
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.23
Consensus pattern (90 bp):
GAGTAAGACCATACCTAAAAGACGCTATGGCATCACGAATCTAAAGAATAAGACCATAGCTGAAA
GACACTATGGCATCATGATTCTTTC
Found at i:22214654 original size:22 final size:22
Alignment explanation
Indices: 22214629--22214680 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
22214619 GTGCATATAT
* *
22214629 ATATATATATATTTTTGTAAGA
1 ATATATATATATTTTTATAAAA
* * *
22214651 ATATTTTTATCTTTTTATAAAA
1 ATATATATATATTTTTATAAAA
22214673 ATATATAT
1 ATATATAT
22214681 TAAATAAATT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
ATATATATATATTTTTATAAAA
Found at i:22220215 original size:96 final size:96
Alignment explanation
Indices: 22220051--22220235 Score: 280
Period size: 96 Copynumber: 1.9 Consensus size: 96
22220041 CTTACTTTCT
* * * * *
22220051 TCTCTAGTTGGATATTTAATTGGATATTGGAAATCCTTATGATCTTCTGAATTACACTAATAACA
1 TCTCTAGTTGGATATTTAAGTGGACATTGGAAACCCTTATGACCTTCTGAACTACACTAATAACA
*
22220116 TTGCACAAAAGGTGATATCTCAATTGTCTTC
66 TTGCACAAAAGGTGATAGCTCAATTGTCTTC
* * *
22220147 TCTCTATTTGGATATTTAAGTGGGCATTGGAAACCCTTATGACCTTTTGAACTACACTAATAACA
1 TCTCTAGTTGGATATTTAAGTGGACATTGGAAACCCTTATGACCTTCTGAACTACACTAATAACA
*
22220212 TTGCACAAAATGTGATAGCTCAAT
66 TTGCACAAAAGGTGATAGCTCAAT
22220236 CGTATTCCTC
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 79 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (96 bp):
TCTCTAGTTGGATATTTAAGTGGACATTGGAAACCCTTATGACCTTCTGAACTACACTAATAACA
TTGCACAAAAGGTGATAGCTCAATTGTCTTC
Found at i:22223426 original size:30 final size:30
Alignment explanation
Indices: 22223385--22223457 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
22223375 TATTCATAAC
*
22223385 AACAA-ATAATTTATTTTAGAATTGAAAGT
1 AACAATATAATTTATTTTAGAATTGAAAAT
22223414 AACAATATAATTTATTTTAGAATTGAAAAT
1 AACAATATAATTTATTTTAGAATTGAAAAT
22223444 AACAATATAATTTA
1 AACAATATAATTTA
22223458 ATACATGATT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
29 5 0.12
30 37 0.88
ACGTcount: A:0.51, C:0.04, G:0.07, T:0.38
Consensus pattern (30 bp):
AACAATATAATTTATTTTAGAATTGAAAAT
Found at i:22234497 original size:16 final size:15
Alignment explanation
Indices: 22234476--22234509 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
22234466 GATTTTACAC
*
22234476 TATTATTTGTTTTATT
1 TATTATTTCTTTT-TT
22234492 TATTATTTCTTTTTT
1 TATTATTTCTTTTTT
22234507 TAT
1 TAT
22234510 ATATATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (15 bp):
TATTATTTCTTTTTT
Found at i:22251161 original size:12 final size:13
Alignment explanation
Indices: 22251144--22251172 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
22251134 CTCATACATG
22251144 AATAAATAAA-GC
1 AATAAATAAATGC
22251156 AATAAATAAATGC
1 AATAAATAAATGC
22251169 AATA
1 AATA
22251173 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:22255547 original size:96 final size:96
Alignment explanation
Indices: 22255371--22255548 Score: 248
Period size: 96 Copynumber: 1.9 Consensus size: 96
22255361 AAGCCCCTAG
* * * * * * *
22255371 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCGAATCTTATTTCCCTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCACACCGAAGATAGCAAACCTTATCTCCCTAAAGTTGC
*
22255436 AGTGGAATAGATTGAAGCTATAAATTACAGA
66 AGTGGAACAGATTGAAGCTATAAATTACAGA
* *
22255467 TCTTATCTCTCTGAAGTTGCAGTAGAGCACACCGAAGATAGCAAACCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCACACCGAAGATAGCAAACCTTATCTCCCTAAAGTTGC
* *
22255532 AGTGGAGCAGGTTGAAG
66 AGTGGAACAGATTGAAG
22255549 ATACCAATCT
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 70 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (96 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGCACACCGAAGATAGCAAACCTTATCTCCCTAAAGTTGC
AGTGGAACAGATTGAAGCTATAAATTACAGA
Found at i:22255576 original size:44 final size:44
Alignment explanation
Indices: 22255466--22255987 Score: 383
Period size: 44 Copynumber: 11.7 Consensus size: 44
22255456 TAAATTACAG
* * **** *
22255466 ATCTTATCTCTCTGAAGTTGCAGTAGAGCACACCGAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATA-CCA
*
22255511 ACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
* * * **
22255555 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTATTA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
* * * **
22255599 ATCCTATCTCCTTGAAGTTGCAGTGGAGC-GGATT-AAAATGATGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTGAAGAT-ACCA
* * * * * *
22255643 ATCCTATAC-CTCTAAAGTTACAGTAGG-TC-GGATTAAATCGACCATGA-CA
1 ATCTTAT-CTCCCTGAAGTTGCAGT-GGAGCAGG-TTGAA--G---AT-ACCA
* * * ** *
22255692 AGTCTTATCTCCCTGAAGTTGTAGTGAAACAGACTGAAGATAACAA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGAT-ACCA
* * *
22255738 ACCTTATCTTCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
* * ** *
22255782 GTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATA-CCA
* **
22255827 ACCTTATCTTGCTGAAGTTGCAGTGGAGCAGGTTGAAGATA-CA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
*
22255870 AGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
** * * * * **
22255915 ATCTTATCTTACTAAAGCTGCAGTGGAGCAGATTGAAGCTATTA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
* *
22255959 ATCCTATCACCCTGAAGTTGCAGTGGAGC
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGC
22255988 GGATTAAAAC
Statistics
Matches: 379, Mismatches: 80, Indels: 37
0.76 0.16 0.07
Matches are distributed among these distances:
43 6 0.02
44 228 0.60
45 113 0.30
46 2 0.01
48 1 0.00
49 4 0.01
50 24 0.06
51 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCA
Found at i:22255795 original size:89 final size:89
Alignment explanation
Indices: 22255689--22255987 Score: 395
Period size: 89 Copynumber: 3.4 Consensus size: 89
22255679 ATCGACCATG
* * *
22255689 ACAAGTCTTATCTCCCTGAAGTTGTAGTGAAACAGACTGAAGATAACAAACCTTATCTTCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAACAAACCTTATCTTACTGAA
22255754 GTTGCAGTGGAGCAGGTTGAAGAT
66 GTTGCAGTGGAGCAGGTTGAAGAT
* * *
22255778 ACGAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAAACCTTATCTTGCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAACAAACCTTATCTTACTGAA
22255843 GTTGCAGTGGAGCAGGTTGAAGAT
66 GTTGCAGTGGAGCAGGTTGAAGAT
* * ** * * *
22255867 ACAAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGAT-ACCAATCTTATCTTACTAAA
1 ACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAACAAACCTTATCTTACTGAA
* * *
22255931 GCTGCAGTGGAGCAGATTGAAGCT
66 GTTGCAGTGGAGCAGGTTGAAGAT
* * * *
22255955 ATTAA-TCCTATCACCCTGAAGTTGCAGTGGAGC
1 A-CAAGTCTTATCTCCCTGAAGTTGTAGTGGAGC
22255988 GGATTAAAAC
Statistics
Matches: 187, Mismatches: 22, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
88 62 0.33
89 125 0.67
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (89 bp):
ACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAACAAACCTTATCTTACTGAA
GTTGCAGTGGAGCAGGTTGAAGAT
Found at i:22255964 original size:316 final size:318
Alignment explanation
Indices: 22255369--22255995 Score: 768
Period size: 316 Copynumber: 2.0 Consensus size: 318
22255359 CGAAGCCCCT
* ** * * *
22255369 AGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGATAGCGAATCTTATTTCCCTAAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGAAACAGACTGAAGATAACAAACCTTATTTCCCTAAAGTT
* *
22255434 GCAGTGGAATAGATTGAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCACAC
66 GCAGTGGAACAGATTGAAG-----AATTACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCACAC
*
22255499 CGAAGATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCT
126 CGAAGATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAACCTTATCT
* ** * * * *
22255564 CCCTAAAGTTGCAGTGGAGCAGATTGAAGCTATTAATCCTATCTCCTTGAAGTTGCAGTGGAGCG
191 CCCTAAAGTTGCAGTGGAGCAGATTGAAGATACCAATCCTATCTACTTAAAGCTGCAGTGGAGCA
*
22255629 GATTAAAATGATGAATCCTAT-ACCTCTAAAGTTACAGTAGG-TCGGATTAAATCGACCATGACA
256 GATTAAAATGATGAATCCTATCACC-CTAAAGTTACAGT-GGAGCGGATTAAATCGACCATGACA
* *
22255692 AGTCTTATCTCCCTGAAGTTGTAGTGAAACAGACTGAAGATAACAAACCTTATCTT-CCTGAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGAAACAGACTGAAGATAACAAACCTTAT-TTCCCTAAAGT
* * * * * *
22255756 TGCAGTGGAGCAGGTTGAAG-A-TAC-GAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGA
65 TGCAGTGGAACAGATTGAAGAATTACAGA-TCTTATCTCCCTGAAGTTGCAGTAGAGCACACCGA
**
22255818 AGATAGCAAACCTTATCTTGCTGAAGTTGCAGTGGAGCAGGTTGAAGATA-CAAGCCTTATCTCC
129 AGATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAA-CCTTATCTCC
* * *
22255882 CTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTTAC-TAAAGCTGCAGTGGAGCAG
193 CTAAAGTTGCAGTGGAGCAGATTGAAGATACCAATCCTATC-TACTTAAAGCTGCAGTGGAGCAG
** * * *
22255946 ATTGAAGCT-ATTAATCCTATCACCCTGAAGTTGCAGTGGAGCGGATTAAA
257 ATT-AAAATGATGAATCCTATCACCCTAAAGTTACAGTGGAGCGGATTAAA
22255996 ACGATGAATC
Statistics
Matches: 262, Mismatches: 35, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
315 7 0.03
316 174 0.66
317 9 0.03
323 70 0.27
324 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (318 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGAAACAGACTGAAGATAACAAACCTTATTTCCCTAAAGTT
GCAGTGGAACAGATTGAAGAATTACAGATCTTATCTCCCTGAAGTTGCAGTAGAGCACACCGAAG
ATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAACCTTATCTCCCTA
AAGTTGCAGTGGAGCAGATTGAAGATACCAATCCTATCTACTTAAAGCTGCAGTGGAGCAGATTA
AAATGATGAATCCTATCACCCTAAAGTTACAGTGGAGCGGATTAAATCGACCATGACA
Found at i:22256006 original size:44 final size:44
Alignment explanation
Indices: 22255933--22256039 Score: 128
Period size: 44 Copynumber: 2.4 Consensus size: 44
22255923 TTACTAAAGC
* * * * * *
22255933 TGCAGTGGAGCAGATTGAAGCTATTAATCCTATCACC-CTGAAGT
1 TGCAGTGGAGCGGATTAAAACGATGAATCCTA-AACCTCTGAAGT
22255977 TGCAGTGGAGCGGATTAAAACGATGAATCCTAAACCTCTGAAGT
1 TGCAGTGGAGCGGATTAAAACGATGAATCCTAAACCTCTGAAGT
22256021 TGCAGTGG-GTCGGATTAAA
1 TGCAGTGGAG-CGGATTAAA
22256040 TCTACCATAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
43 4 0.07
44 51 0.93
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (44 bp):
TGCAGTGGAGCGGATTAAAACGATGAATCCTAAACCTCTGAAGT
Found at i:22256852 original size:4 final size:4
Alignment explanation
Indices: 22256843--22256870 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
22256833 ATTCTCTACG
22256843 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
22256871 AAAAAAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:22257919 original size:20 final size:23
Alignment explanation
Indices: 22257894--22257940 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 23
22257884 GATACATTAG
*
22257894 TATTATTTTG-TTGTT-G-TTGT
1 TATTATTGTGATTGTTAGATTGT
22257914 TATTATTGTGATTGTTAGATTGT
1 TATTATTGTGATTGTTAGATTGT
22257937 TATT
1 TATT
22257941 TGCATTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 9 0.39
21 5 0.22
22 1 0.04
23 8 0.35
ACGTcount: A:0.17, C:0.00, G:0.19, T:0.64
Consensus pattern (23 bp):
TATTATTGTGATTGTTAGATTGT
Found at i:22260139 original size:26 final size:27
Alignment explanation
Indices: 22260085--22260141 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 27
22260075 CCAGTTCTTC
22260085 ACCAAATCACAACCACAAAACCACTAAA
1 ACCAAATCACAACCAC-AAACCACTAAA
22260113 ACCAAATCACAACCAC-AACCACTAAA
1 ACCAAATCACAACCACAAACCACTAAA
22260139 ACC
1 ACC
22260142 TTCTCTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 13 0.45
28 16 0.55
ACGTcount: A:0.54, C:0.39, G:0.00, T:0.07
Consensus pattern (27 bp):
ACCAAATCACAACCACAAACCACTAAA
Found at i:22260716 original size:6 final size:6
Alignment explanation
Indices: 22260705--22260741 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
22260695 ATTTCTTCCC
*
22260705 TTGGAA TTGGAA TTGAAA TTGGAA TTGGAA TTGGAA T
1 TTGGAA TTGGAA TTGGAA TTGGAA TTGGAA TTGGAA T
22260742 CGAGTTATCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (6 bp):
TTGGAA
Found at i:22263181 original size:12 final size:12
Alignment explanation
Indices: 22263164--22263208 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 12
22263154 TTAAGATCTA
22263164 TTTTTAATATCC
1 TTTTTAATATCC
*
22263176 TTTTTACTATCC
1 TTTTTAATATCC
22263188 TTTTTACTAATATCC
1 -TTTT--TAATATCC
22263203 TTTTTA
1 TTTTTA
22263209 CTAATCCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
12 13 0.46
13 4 0.14
14 4 0.14
15 7 0.25
ACGTcount: A:0.22, C:0.18, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTAATATCC
Found at i:22263198 original size:27 final size:29
Alignment explanation
Indices: 22263168--22263221 Score: 94
Period size: 27 Copynumber: 1.9 Consensus size: 29
22263158 GATCTATTTT
22263168 TAATATCCTTTTTACT-ATCC-TTTTTAC
1 TAATATCCTTTTTACTAATCCATTTTTAC
22263195 TAATATCCTTTTTACTAATCCATTTTT
1 TAATATCCTTTTTACTAATCCATTTTT
22263222 TTTAATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 16 0.64
28 4 0.16
29 5 0.20
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (29 bp):
TAATATCCTTTTTACTAATCCATTTTTAC
Done.