Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 81 of 214
Found at i:22982926 original size:14 final size:15
Alignment explanation
Indices: 22982909--22982941 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
22982899 CTTAAATCAG
22982909 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
22982923 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
22982938 AATC
1 AATC
22982942 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:22983028 original size:21 final size:20
Alignment explanation
Indices: 22982994--22983035 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
22982984 TAAATTAACC
*
22982994 ATATATATACCCTAAACTAT
1 ATATATAAACCCTAAACTAT
22983014 ATATATTAAACCCTAAACTAT
1 ATATA-TAAACCCTAAACTAT
22983035 A
1 A
22983036 ATGAAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (20 bp):
ATATATAAACCCTAAACTAT
Found at i:22983477 original size:41 final size:41
Alignment explanation
Indices: 22983359--22983627 Score: 236
Period size: 41 Copynumber: 6.5 Consensus size: 41
22983349 CGGGCACTTT
* * * *
22983359 TTCAAAAACGTCGCTAAAGCCCTGAGCATTAGCGGCACTCC
1 TTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTC
** * * *
22983400 TTGGAAAATGCCACTAAAGCTCC-GCGCTTTAGCGGCGCTTC
1 TTCAAAAATGCCGCTAAAGC-CCTGAGCATTAGCGGCGCTTC
* *
22983441 TTAAAAAATGCCGCTAAAGCCCAGAGCATTAGCGGCGCTT-
1 TTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTC
* *** **
22983481 TTCCAAAAACGCCGCTAAAGATTTGAGCATTAGCGATGCTTC
1 TT-CAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTC
* *** * * *
22983523 TTCAAAAATGCGGCTAAAGATTTTAGCATTAGCTGCGCTTT
1 TTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTC
** * *
22983564 TTCAAAAATGCCGCTAAAGATCTGAGCATTAGCTGCGCTTTT
1 TTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGC-TTC
*
22983606 TTTAAAAATGCCGCTAAAGCCC
1 TTCAAAAATGCCGCTAAAGCCC
22983628 CGAAAGGTAG
Statistics
Matches: 188, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
40 4 0.02
41 158 0.84
42 26 0.14
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (41 bp):
TTCAAAAATGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTC
Found at i:22983499 original size:82 final size:81
Alignment explanation
Indices: 22983370--22983627 Score: 264
Period size: 82 Copynumber: 3.1 Consensus size: 81
22983360 TCAAAAACGT
* * ** * * * * *
22983370 CGCTAAAGCCCTGAGCATTAGCGGCACTCCTTGGAAAATGCCACTAAAGCTCCGCGCTTTAGCGG
1 CGCTAAAGCCCTGAGCATTAGCGGCGCT-TTTCAAAAATGCCGCTAAAGATCTGAGCATTAGCGG
22983435 CGCTTCTTAAAAAATGC
65 CGCTTCTTAAAAAATGC
* * * *
22983452 CGCTAAAGCCCAGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGATTTGAGCATTAGCGA
1 CGCTAAAGCCCTGAGCATTAGCGGCGCTTTT-CAAAAATGCCGCTAAAGATCTGAGCATTAGCGG
* *
22983517 TGCTTCTTCAAAAATGC
65 CGCTTCTTAAAAAATGC
* *** * * *
22983534 GGCTAAAGATTTTAGCATTAGCTGCGCTTTTTCAAAAATGCCGCTAAAGATCTGAGCATTAGCTG
1 CGCTAAAGCCCTGAGCATTAGCGGCGC-TTTTCAAAAATGCCGCTAAAGATCTGAGCATTAGCGG
* *
22983599 CGCTTTTTTTAAAAATGC
65 CGC-TTCTTAAAAAATGC
22983617 CGCTAAAGCCC
1 CGCTAAAGCCC
22983628 CGAAAGGTAG
Statistics
Matches: 140, Mismatches: 33, Indels: 5
0.79 0.19 0.03
Matches are distributed among these distances:
81 2 0.01
82 115 0.82
83 23 0.16
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (81 bp):
CGCTAAAGCCCTGAGCATTAGCGGCGCTTTTCAAAAATGCCGCTAAAGATCTGAGCATTAGCGGC
GCTTCTTAAAAAATGC
Found at i:22983781 original size:40 final size:41
Alignment explanation
Indices: 22983737--22983813 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
22983727 GCTTTCCTAA
22983737 AAGCGCCGCTAATGCTC-GATCTTTAGCAGCATTTTTGAAG
1 AAGCGCCGCTAATGCTCAGATCTTTAGCAGCATTTTTGAAG
*
22983777 AAGCGCCGCTAATGCTCAGATCTTTAGCGGCATTTTT
1 AAGCGCCGCTAATGCTCAGATCTTTAGCAGCATTTTT
22983814 TATCCAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 17 0.49
41 18 0.51
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (41 bp):
AAGCGCCGCTAATGCTCAGATCTTTAGCAGCATTTTTGAAG
Found at i:22984057 original size:14 final size:14
Alignment explanation
Indices: 22984038--22984067 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22984028 AACCCATAAA
22984038 CCTTAAATCACAAT
1 CCTTAAATCACAAT
*
22984052 CCTTAAATCAGAAT
1 CCTTAAATCACAAT
22984066 CC
1 CC
22984068 CTAATCCCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.30, G:0.03, T:0.27
Consensus pattern (14 bp):
CCTTAAATCACAAT
Found at i:22984633 original size:41 final size:41
Alignment explanation
Indices: 22984502--22984781 Score: 211
Period size: 41 Copynumber: 6.8 Consensus size: 41
22984492 AAATGTTTTT
* *
22984502 GCGGACGCTTTTTCAAAAACGTCGCTAAAGCCCTGAGCATTA
1 GCGG-CGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * ** * * * * *
22984544 GCGGCACTCCTTGGAAAATGCCACTAAAGCCCCGCGTATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
** * * *
22984585 GTAGCGCTTCTTAAAAAATGCCGCTAAAGCCCAGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
*** *
22984626 GCGGCGCTT-TTCCAAAAACGCCGCTAAAGATTTGAGCAGTA
1 GCGGCGCTTCTT-CAAAAACGCCGCTAAAGCCCTGAGCATTA
* *** **
22984667 GCGACGCTTCTTCAAAAACGCCGCTAAAGATTTTTGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * * ***
22984708 GCTGCGCTTTTTCAAAAATGCCGCTAAAAATCTGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
22984749 GCTGCGCTTTTTTTAAAAACGCCGCTAAAGCCC
1 GCGGCGC-TTCTTCAAAAACGCCGCTAAAGCCC
22984782 CGAAAGGTAG
Statistics
Matches: 188, Mismatches: 47, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
40 2 0.01
41 160 0.85
42 26 0.14
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (41 bp):
GCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:22984870 original size:16 final size:16
Alignment explanation
Indices: 22984849--22984880 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22984839 ACGCCACTAA
22984849 TGCTCATTTTCAGCGG
1 TGCTCATTTTCAGCGG
22984865 TGCTCATTTTCAGCGG
1 TGCTCATTTTCAGCGG
22984881 CGCTTTCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38
Consensus pattern (16 bp):
TGCTCATTTTCAGCGG
Found at i:22984968 original size:41 final size:40
Alignment explanation
Indices: 22984892--22984968 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
22984882 GCTTTCCTAA
**
22984892 AAGCGCCGCTAATGCTCGATCTTTAGCAATGTTTTTGAAG
1 AAGCGCCGCTAATGCTCGATCTTTAGCAACATTTTTGAAG
**
22984932 AAGCGCCGCTAATGCTCAGATCTTTAGCGGCATTTTT
1 AAGCGCCGCTAATGCTC-GATCTTTAGCAACATTTTT
22984969 TTATCCAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (40 bp):
AAGCGCCGCTAATGCTCGATCTTTAGCAACATTTTTGAAG
Found at i:22985182 original size:21 final size:21
Alignment explanation
Indices: 22985158--22985211 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
22985148 CGAATCCATA
* * *
22985158 AACCCTAAATCCCTAACTCTT
1 AACCCTAAACCCCTAACCCCT
22985179 AACCTCT-AACCCCTAACCCCT
1 AACC-CTAAACCCCTAACCCCT
22985200 AACCCATAAACC
1 AACCC-TAAACC
22985212 TTAAATCACA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 1 0.04
21 20 0.74
22 6 0.22
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.20
Consensus pattern (21 bp):
AACCCTAAACCCCTAACCCCT
Found at i:22985229 original size:14 final size:14
Alignment explanation
Indices: 22985210--22985239 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22985200 AACCCATAAA
22985210 CCTTAAATCACAAT
1 CCTTAAATCACAAT
*
22985224 CCTTAAATCAGAAT
1 CCTTAAATCACAAT
22985238 CC
1 CC
22985240 CTAATCCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.30, G:0.03, T:0.27
Consensus pattern (14 bp):
CCTTAAATCACAAT
Found at i:22985252 original size:14 final size:15
Alignment explanation
Indices: 22985235--22985267 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
22985225 CTTAAATCAG
22985235 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
22985249 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
22985264 AATC
1 AATC
22985268 TATAAACCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:22985804 original size:41 final size:41
Alignment explanation
Indices: 22985676--22985952 Score: 241
Period size: 41 Copynumber: 6.7 Consensus size: 41
22985666 TGTTTTTGCG
* *
22985676 GGCGCTTTTTCAAAAACGTCGCTAAAGCCCTGAGCATTAGC
1 GGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGC
* * ** * * * *
22985717 GGCACTCCTTGGAAAATGCCACTAAAGCCCCGCGCATTAGC
1 GGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGC
* * * *
22985758 AGCGCTTCTTAAAAAATGCCGCTAAAGCCCAGAGCATTAGC
1 GGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGC
* ***
22985799 GGCGCTT-TTCCAAAAACGTCGCTAAAGATTTGAGCATTAGC
1 GGCGCTTCTT-CAAAAACGCCGCTAAAGCCCTGAGCATTAGC
* *** *
22985840 GACGCTTCTTCAAAAACGCCGCTAAAGATTTTAGCATTAGC
1 GGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGC
* * * ***
22985881 TGCGCTTTTTCAAAAATGCCGCTAAAAATCTGAGCATTAGC
1 GGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGC
* * *
22985922 TGCGCTTTTTTTAAAAACGCCGCTAAAGCCC
1 GGCGC-TTCTTCAAAAACGCCGCTAAAGCCC
22985953 CGAAAGGTAG
Statistics
Matches: 192, Mismatches: 41, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
40 2 0.01
41 168 0.88
42 22 0.11
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (41 bp):
GGCGCTTCTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGC
Found at i:22986256 original size:21 final size:21
Alignment explanation
Indices: 22986232--22986285 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
22986222 CGAATCCATA
* * *
22986232 AACCCTAAATCCCTAACTCTT
1 AACCCTAAACCCCTAACCCCT
22986253 AACCTCT-AACCCCTAACCCCT
1 AACC-CTAAACCCCTAACCCCT
22986274 AACCCATAAACC
1 AACCC-TAAACC
22986286 TTAAATCAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 1 0.04
21 20 0.74
22 6 0.22
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.20
Consensus pattern (21 bp):
AACCCTAAACCCCTAACCCCT
Found at i:22986303 original size:14 final size:14
Alignment explanation
Indices: 22986284--22986313 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
22986274 AACCCATAAA
22986284 CCTTAAATCAGAAT
1 CCTTAAATCAGAAT
22986298 CCTTAAATCAGAAT
1 CCTTAAATCAGAAT
22986312 CC
1 CC
22986314 CTAATCCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (14 bp):
CCTTAAATCAGAAT
Found at i:22986326 original size:14 final size:15
Alignment explanation
Indices: 22986309--22986341 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
22986299 CTTAAATCAG
22986309 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
22986323 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
22986338 AATC
1 AATC
22986342 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:22986898 original size:82 final size:81
Alignment explanation
Indices: 22986748--22986987 Score: 273
Period size: 82 Copynumber: 2.9 Consensus size: 81
22986738 AAATGTTTTT
* * * ** *
22986748 GCGGCGCTTTTTCAAAAACGTCGCTAAAGCCATGAGCATTAGCGGCGCTCCTTGGAAAATGCCAC
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCCATGAGCATTAGCGGCGCT-TTTCAAAAATGCCGC
22986813 TAAAGCTCCGAGCATTA
65 TAAAGCTCCGAGCATTA
* * ** *
22986830 GCGGCGCTTCTTAAAAAATGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTTCCAAAAACGCCGC
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCCATGAGCATTAGCGGCGCTTTT-CAAAAATGCCGC
* *
22986895 TAAAGATCTGAGCATTA
65 TAAAGCTCCGAGCATTA
* *** * *
22986912 GCGGTGCTTCTTCAAAAACGCCGCTAAAGATTTGAGCATTAGCTGCGCTTTTTCAAAAATACCGC
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGCCATGAGCATTAGCGGCGC-TTTTCAAAAATGCCGC
*
22986977 TAAAGCCCCGA
65 TAAAGCTCCGA
22986988 AAGGTAAAAA
Statistics
Matches: 130, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
81 2 0.02
82 124 0.95
83 4 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (81 bp):
GCGGCGCTTCTTCAAAAACGCCGCTAAAGCCATGAGCATTAGCGGCGCTTTTCAAAAATGCCGCT
AAAGCTCCGAGCATTA
Found at i:22986941 original size:41 final size:41
Alignment explanation
Indices: 22986748--22986981 Score: 247
Period size: 41 Copynumber: 5.7 Consensus size: 41
22986738 AAATGTTTTT
* * *
22986748 GCGGCGCTTTTTCAAAAACGTCGCTAAAG-CCATGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGATC-TGAGCATTA
* ** * * * *
22986789 GCGGCGCTCCTTGGAAAATGCCACTAAAGCTCCGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGATCTGAGCATTA
* * ** *
22986830 GCGGCGCTTCTTAAAAAATGCCGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGATCTGAGCATTA
22986871 GCGGCGCTT-TTCCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTCTT-CAAAAACGCCGCTAAAGATCTGAGCATTA
* *
22986912 GCGGTGCTTCTTCAAAAACGCCGCTAAAGATTTGAGCATTA
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAGATCTGAGCATTA
* * **
22986953 GCTGCGCTTTTTCAAAAATACCGCTAAAG
1 GCGGCGCTTCTTCAAAAACGCCGCTAAAG
22986982 CCCCGAAAGG
Statistics
Matches: 164, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
40 2 0.01
41 159 0.97
42 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (41 bp):
GCGGCGCTTCTTCAAAAACGCCGCTAAAGATCTGAGCATTA
Found at i:22986970 original size:123 final size:123
Alignment explanation
Indices: 22986748--22986987 Score: 320
Period size: 123 Copynumber: 2.0 Consensus size: 123
22986738 AAATGTTTTT
* * ** *
22986748 GCGGCGCTTTTTCAAAAACGTCGCTAAAGCCATGAGCATTAGCGGCGCTCCTTGGAAAATGCCAC
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCATGAGCATTAGCGGCGCTCCTTCAAAAACGCCAC
* *
22986813 TAAAGCTCCGAGCATTAGCGGCGCTTCTTAAAAAATGCCGCTAAAGCCCCGAGCATTA
66 TAAAGATCCGAGCATTAGCGGCGCTTCTTAAAAAATACCGCTAAAGCCCCGAGCATTA
* * * *
22986871 GCGGCGCTTTTCCAAAAACGCCGCTAAAGATC-TGAGCATTAGCGGTGCTTCTTCAAAAACGCCG
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCATGAGCATTAGCGGCGCTCCTTCAAAAACGCCA
** * * *
22986935 CTAAAGATTTGAGCATTAGCTGCGCTTTTTCAAAAATACCGCTAAAGCCCCGA
65 CTAAAGATCCGAGCATTAGCGGCGCTTCTTAAAAAATACCGCTAAAGCCCCGA
22986988 AAGGTAAAAA
Statistics
Matches: 100, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
123 99 0.99
124 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (123 bp):
GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCATGAGCATTAGCGGCGCTCCTTCAAAAACGCCAC
TAAAGATCCGAGCATTAGCGGCGCTTCTTAAAAAATACCGCTAAAGCCCCGAGCATTA
Found at i:22987127 original size:40 final size:40
Alignment explanation
Indices: 22987052--22987127 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
22987042 GCCGCTTATG
* *
22987052 AGCGCCGCTAATGCTTGATCTTTAGCGGCATTTTTTAAGA
1 AGCGCCGCTAATGCTAGATCTTTAGCGGCAGTTTTTAAGA
22987092 AGCGCCGCTAATGCTCAGATCTTTAGCGGC-GTTTTT
1 AGCGCCGCTAATGCT-AGATCTTTAGCGGCAGTTTTT
22987128 TATCCAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 20 0.61
41 13 0.39
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (40 bp):
AGCGCCGCTAATGCTAGATCTTTAGCGGCAGTTTTTAAGA
Found at i:22987127 original size:41 final size:40
Alignment explanation
Indices: 22987052--22987129 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 40
22987042 GCCGCTTATG
*
22987052 AGCGCCGCTAATGCTTGATCTTTAGCGGCATTTTTTAAGA
1 AGCGCCGCTAATGCTAGATCTTTAGCGGCATTTTTTAAGA
*
22987092 AGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTTA
1 AGCGCCGCTAATGCT-AGATCTTTAGCGGCATTTTTTA
22987130 TCCAAATGCC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 15 0.43
41 20 0.57
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.35
Consensus pattern (40 bp):
AGCGCCGCTAATGCTAGATCTTTAGCGGCATTTTTTAAGA
Found at i:22987142 original size:42 final size:40
Alignment explanation
Indices: 22987054--22987144 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 40
22987044 CGCTTATGAG
* * *
22987054 CGCCGCTAATGCTTGATCTTTAGCGGCATTTTTTAAGAAG
1 CGCCGCTAATGCTAGATCTTTAGCGGCATTTTTTAACAAA
* *
22987094 CGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTTATCCAAA
1 CGCCGCTAATGCT-AGATCTTTAGCGGCATTTTTTA-ACAAA
*
22987136 TGCCGCTAA
1 CGCCGCTAA
22987145 AAATGCCTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 13 0.30
41 20 0.47
42 10 0.23
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (40 bp):
CGCCGCTAATGCTAGATCTTTAGCGGCATTTTTTAACAAA
Found at i:22987182 original size:54 final size:54
Alignment explanation
Indices: 22987100--22987210 Score: 186
Period size: 54 Copynumber: 2.1 Consensus size: 54
22987090 GAAGCGCCGC
* * *
22987100 TAATGCTCAGATCTTTAGCGGCGTTTTTTATCCAAATGCCGCTAAAAATGCCTT
1 TAATGCTCAGACCTTTAGCGGCATTTTTTATCCAAATGCCACTAAAAATGCCTT
*
22987154 TAATGCTCAGACCTTTAGTGGCATTTTTTATCCAAATGCCACTAAAAATGCCTT
1 TAATGCTCAGACCTTTAGCGGCATTTTTTATCCAAATGCCACTAAAAATGCCTT
22987208 TAA
1 TAA
22987211 AAGCTTATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (54 bp):
TAATGCTCAGACCTTTAGCGGCATTTTTTATCCAAATGCCACTAAAAATGCCTT
Found at i:22988977 original size:12 final size:12
Alignment explanation
Indices: 22988960--22988986 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22988950 ATTATCATCG
22988960 CTCTAATCCAAT
1 CTCTAATCCAAT
22988972 CTCTAATCCAAT
1 CTCTAATCCAAT
22988984 CTC
1 CTC
22988987 GTGTACTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.37, G:0.00, T:0.33
Consensus pattern (12 bp):
CTCTAATCCAAT
Found at i:22991706 original size:54 final size:54
Alignment explanation
Indices: 22991608--22991712 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 54
22991598 TAAGAAATAC
* * **
22991608 CTTTGTAGTGTACTCTGAAATAAATGCCTTTGTGGTGCACTTTGAAAAGAATGT
1 CTTTGTAGTGCACTCTGAAAGAAATGCCTTTGTGGTAAACTTTGAAAAGAATGT
* * * *
22991662 CTTTGTGGTGCACTCTGAAAGGAATGCCTTTGTGGTAAATTTTGAATAGAA
1 CTTTGTAGTGCACTCTGAAAGAAATGCCTTTGTGGTAAACTTTGAAAAGAA
22991713 CGCCTTGGTG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (54 bp):
CTTTGTAGTGCACTCTGAAAGAAATGCCTTTGTGGTAAACTTTGAAAAGAATGT
Found at i:22991707 original size:27 final size:27
Alignment explanation
Indices: 22991607--22991697 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
22991597 CTAAGAAATA
* * *
22991607 CCTTTGTAGTGTACTCTGAAATA-AATG
1 CCTTTGTGGTGCACTTTGAAA-AGAATG
22991634 CCTTTGTGGTGCACTTTGAAAAGAATG
1 CCTTTGTGGTGCACTTTGAAAAGAATG
* * *
22991661 TCTTTGTGGTGCACTCTGAAAGGAATG
1 CCTTTGTGGTGCACTTTGAAAAGAATG
22991688 CCTTTGTGGT
1 CCTTTGTGGT
22991698 AAATTTTGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.36
Consensus pattern (27 bp):
CCTTTGTGGTGCACTTTGAAAAGAATG
Found at i:22991731 original size:54 final size:54
Alignment explanation
Indices: 22991617--22991732 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
22991607 CCTTTGTAGT
* ** * * * *
22991617 GTACTCTGAAATAAATGCCTTTGTGGTGCACTTTGAAAAGAATGTCTTTGTGGT
1 GTACTCTGAAAGAAATGCCTTTGTGGTAAACTTTGAAAAGAACGCCTTGGTGGC
* * * *
22991671 GCACTCTGAAAGGAATGCCTTTGTGGTAAATTTTGAATAGAACGCCTTGGTGGC
1 GTACTCTGAAAGAAATGCCTTTGTGGTAAACTTTGAAAAGAACGCCTTGGTGGC
22991725 GTACTCTG
1 GTACTCTG
22991733 TATGATTGCC
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (54 bp):
GTACTCTGAAAGAAATGCCTTTGTGGTAAACTTTGAAAAGAACGCCTTGGTGGC
Found at i:22993639 original size:50 final size:50
Alignment explanation
Indices: 22993564--22993853 Score: 321
Period size: 50 Copynumber: 5.7 Consensus size: 50
22993554 TTTCTTGTAC
* * * ** *
22993564 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * * ** * *
22993614 TGCCCATGCTATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * *
22993664 TGCCAACGCCATGTCACAGACATGTTCTAACATGAGACCTCTCATCTCA-G
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCT-AGG
* * *
22993714 TGCCAACGCCATGTCCGAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
*
22993764 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTC---ATCT--A-GG
*
22993820 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG
22993854 GGATCTCTTT
Statistics
Matches: 200, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
50 162 0.81
53 4 0.02
56 34 0.17
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
Found at i:22993697 original size:100 final size:101
Alignment explanation
Indices: 22993564--22993861 Score: 366
Period size: 100 Copynumber: 2.9 Consensus size: 101
22993554 TTTCTTGTAC
* * * ** * *
22993564 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATAT-AGGTGCCCATGCTATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAGGTGCCAATGCCATGT
*
22993628 CCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
66 CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * * *
22993664 TGCCAACGCCATGTCACAGACATGTTCTAACATGAGACCTCTCATCTCA-GTGCCAACGCCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAGGTGCCAATGCCATGT
* * *
22993728 CCGAGACATGGTCTTACATGGGACCTCTCATCTTGG
66 CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
*
22993764 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATAATCTCAATGATGCCAATGC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCAT-A--TC-A-GGTGCCAATGC
* *
22993829 CATGTCCCAGACATGGTCTTACATGGGATCTCT
61 CATGTCCCAGACATGGTCTTACAGGGGACCTCT
22993862 TTACCCAAAT
Statistics
Matches: 167, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
100 124 0.74
101 1 0.01
103 2 0.01
104 1 0.01
106 39 0.23
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (101 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAGGTGCCAATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:22996881 original size:17 final size:18
Alignment explanation
Indices: 22996867--22996950 Score: 71
Period size: 19 Copynumber: 4.4 Consensus size: 18
22996857 ATAATCTTCG
22996867 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
22996885 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
* *
22996904 TATGATATATGAAATCTTAGA
1 -A-G-GATATGCAATCTTAGA
* *
22996925 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
22996944 A-GATATG
1 AGGATATG
22996951 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 33 0.59
21 16 0.29
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:22996893 original size:19 final size:19
Alignment explanation
Indices: 22996869--22996943 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
22996859 AATCTTCGAG
22996869 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22996888 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
22996907 GATATATGAAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
22996928 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
22996944 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
21 18 0.35
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22996919 original size:21 final size:21
Alignment explanation
Indices: 22996870--22996932 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
22996860 ATCTTCGAGG
22996870 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
22996889 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
22996910 ATATGAAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
22996931 AT
1 AT
22996933 GTAATCTTAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 19 0.46
21 22 0.54
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:22996962 original size:23 final size:23
Alignment explanation
Indices: 22996922--22996967 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
22996912 ATGAAATCTT
22996922 AGATATGATATGTAATCT-TAGA
1 AGATATGATATGTAATCTGTAGA
*
22996944 AGATATGATTTTGTAATCTGTAGA
1 AGATATGA-TATGTAATCTGTAGA
22996968 TAGCCTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 8 0.38
23 9 0.43
24 4 0.19
ACGTcount: A:0.37, C:0.04, G:0.20, T:0.39
Consensus pattern (23 bp):
AGATATGATATGTAATCTGTAGA
Found at i:22997389 original size:3 final size:3
Alignment explanation
Indices: 22997381--22997420 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
22997371 ATTAATTTTG
*
22997381 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T
22997421 ACCTACATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:22997389 original size:15 final size:15
Alignment explanation
Indices: 22997365--22997419 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
22997355 GTTTTTAGTC
22997365 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
22997379 TGTTATTATTATTTT
1 TATTATTATTAATTT
22997394 TATTATTA-T-ATTAT
1 TATTATTATTAATT-T
22997408 ATATTATTATTA
1 -TATTATTATTA
22997420 TACCTACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
13 2 0.06
14 5 0.16
15 24 0.75
16 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:22997396 original size:12 final size:12
Alignment explanation
Indices: 22997367--22997418 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
22997357 TTTTAGTCTA
22997367 TTTTATTAATT-T
1 TTTTATT-ATTAT
*
22997379 TGTTATTATTAT
1 TTTTATTATTAT
22997391 TTTTATTATTAT
1 TTTTATTATTAT
22997403 ATTATATATTATTAT
1 -TT-T-TATTATTAT
22997418 T
1 T
22997419 ATACCTACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 3 0.09
12 18 0.53
13 2 0.06
14 2 0.06
15 9 0.26
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTTATTATTAT
Found at i:23004844 original size:88 final size:88
Alignment explanation
Indices: 23004695--23004964 Score: 432
Period size: 88 Copynumber: 3.1 Consensus size: 88
23004685 GTGAAGATAA
*** *
23004695 CAGATCTTGCCTTCCTGTACTGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGTACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
23004760 GCAACGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * *
23004783 CAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGTCACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGTACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
23004848 GCAGTGGAGCAGGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
23004871 CAGATCTTGCCTTCCTGTACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGTACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
23004936 GTAGCGGAGCAAGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
23004959 CAGATC
1 CAGATC
23004965 GAAGTCACCA
Statistics
Matches: 166, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 166 1.00
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.20
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGTACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
GCAGCGGAGCAGGCTAAAAATAG
Found at i:23004993 original size:57 final size:57
Alignment explanation
Indices: 23004900--23005014 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 57
23004890 CCAACAGCGA
* * *
23004900 AGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAAGCTAAAAAT
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCGAAGCAAGCTAAAAAT
* * *
23004957 AGCAGATCGAAGTCACCAGCCTTGCCTCCTTAGGTTGCAGCGAAGCAGGCTAAAAAT
1 AGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCGAAGCAAGCTAAAAAT
23005014 A
1 A
23005015 ACAAATCTTG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.30, C:0.26, G:0.25, T:0.18
Consensus pattern (57 bp):
AGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCGAAGCAAGCTAAAAAT
Found at i:23005011 original size:145 final size:145
Alignment explanation
Indices: 23004812--23005109 Score: 479
Period size: 145 Copynumber: 2.1 Consensus size: 145
23004802 CCAACAGCGA
* * * * *
23004812 AGCAGATCGAAGTCACCAACCTTGCCTCCCTGGGTTGCAGTGGAGCAGGCTAAAAATAGCAGATC
1 AGCAGATCGAAGTCACCAACCTTGCCTCCCTAGGTTGCAGCGAAGCAGGCTAAAAATAACAAATC
* * *
23004877 TTGCCTTCCTGTACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCG
66 TTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCG
23004942 GAGCAAGCTAAAAAT
131 GAGCAAGCTAAAAAT
* *
23004957 AGCAGATCGAAGTCACCAGCCTTGCCTCCTTAGGTTGCAGCGAAGCAGGCTAAAAATAACAAATC
1 AGCAGATCGAAGTCACCAACCTTGCCTCCCTAGGTTGCAGCGAAGCAGGCTAAAAATAACAAATC
* *
23005022 TTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGGCACCAGCCTTGCCTCCCTAGGTTGCAGCG
66 TTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCG
*
23005087 GAGCAGGCTAAAAAT
131 GAGCAAGCTAAAAAT
23005102 AGCAGATC
1 AGCAGATC
23005110 TTGCCTTCCT
Statistics
Matches: 140, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
145 140 1.00
ACGTcount: A:0.29, C:0.28, G:0.24, T:0.18
Consensus pattern (145 bp):
AGCAGATCGAAGTCACCAACCTTGCCTCCCTAGGTTGCAGCGAAGCAGGCTAAAAATAACAAATC
TTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCG
GAGCAAGCTAAAAAT
Found at i:23005111 original size:88 final size:88
Alignment explanation
Indices: 23004957--23005315 Score: 547
Period size: 88 Copynumber: 4.1 Consensus size: 88
23004947 AGCTAAAAAT
* * * *
23004957 AGCAGATCGAAGTCACCAGCCTTGCCTCCTTAGGTTGCAGCGAAGCAGGCTAAAAATAACAAATC
1 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGCTAAAAATAGCAGATC
23005022 TTGCCTTCCTGCACCGACAGCGA
66 TTGCCTTCCTGCACCGACAGCGA
*
23005045 AGCAGATCGAAGGCACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGCTAAAAATAGCAGATC
1 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGCTAAAAATAGCAGATC
* *
23005110 TTGCCTTCCTGCACCGAAAACGA
66 TTGCCTTCCTGCACCGACAGCGA
* * * * *
23005133 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTTACAGTGGAACAGGCTAAAAATATCAGATC
1 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGCTAAAAATAGCAGATC
*
23005198 TTGCCTTCCTACACCGACAGCGA
66 TTGCCTTCCTGCACCGACAGCGA
* * * *
23005221 AGCAGATCGAAGACACCGGCCTTGCCTCCCTAGGTTGCAGTGGAGCAGGTTAAAAATAGCAGATC
1 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGCTAAAAATAGCAGATC
* *
23005286 TTGCCTTCCTTCACCGAGAGCGA
66 TTGCCTTCCTGCACCGACAGCGA
23005309 AGCAGAT
1 AGCAGAT
23005316 TGATGACCTC
Statistics
Matches: 246, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 246 1.00
ACGTcount: A:0.28, C:0.29, G:0.24, T:0.19
Consensus pattern (88 bp):
AGCAGATCGAAGTCACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAGGCTAAAAATAGCAGATC
TTGCCTTCCTGCACCGACAGCGA
Found at i:23005136 original size:233 final size:233
Alignment explanation
Indices: 23004724--23005197 Score: 725
Period size: 233 Copynumber: 2.0 Consensus size: 233
23004714 CTGGCAGCGA
* * * * *
23004724 AGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGCAACGGAGCAGGTTAAAAATAGCAGATC
1 AGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTGCAACGAAGCAGGCTAAAAATAACAAATC
* * *
23004789 TTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGTCACCAACCTTGCCTCCCTGGGTTGCAGTG
66 TTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGGCACCAACCTTGCCTCCCTAGGTTGCAGCG
* *
23004854 GAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGTACCAACAGCGAAGCAGATCGAAGACACCAG
131 GAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAACGAAGCAGATCGAAGACACCAG
** *
23004919 CCTTGCCTCCCTGGGTTGTAGCGGAGCAAGCTAAAAAT
196 CCTTGCCTCCCTGGGTTACAGCGGAACAAGCTAAAAAT
* * * *
23004957 AGCAGATCGAAGTCACCAGCCTTGCCTCCTTAGGTTGCAGCGAAGCAGGCTAAAAATAACAAATC
1 AGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTGCAACGAAGCAGGCTAAAAATAACAAATC
* *
23005022 TTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGGCACCAGCCTTGCCTCCCTAGGTTGCAGCG
66 TTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGGCACCAACCTTGCCTCCCTAGGTTGCAGCG
*
23005087 GAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCGAA-AACGAAGCAGATCGAAGTCACCA
131 GAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACC-AACAACGAAGCAGATCGAAGACACCA
* *
23005151 GCCTTGCCTCCCTGGGTTACAGTGGAACAGGCTAAAAAT
195 GCCTTGCCTCCCTGGGTTACAGCGGAACAAGCTAAAAAT
*
23005190 ATCAGATC
1 AGCAGATC
23005198 TTGCCTTCCT
Statistics
Matches: 217, Mismatches: 23, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
233 215 0.99
234 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.24, T:0.19
Consensus pattern (233 bp):
AGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTGCAACGAAGCAGGCTAAAAATAACAAATC
TTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGGCACCAACCTTGCCTCCCTAGGTTGCAGCG
GAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAACGAAGCAGATCGAAGACACCAG
CCTTGCCTCCCTGGGTTACAGCGGAACAAGCTAAAAAT
Found at i:23005280 original size:321 final size:321
Alignment explanation
Indices: 23004691--23005285 Score: 967
Period size: 321 Copynumber: 1.9 Consensus size: 321
23004681 ATCAGTGAAG
* * * * *
23004691 ATAACAGATCTTGCCTTCCTGTACTGGCAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTG
1 ATAACAAATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTA
* *
23004756 GGTTGCAACGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCG
66 GGTTGCAACGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAACGAAGCAGATCG
* *
23004821 AAGTCACCAACCTTGCCTCCCTGGGTTGCAGTGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCC
131 AAGTCACCAACCTTGCCTCCCTGGGTTACAGTGGAACAGGCTAAAAATAGCAGATCTTGCCTTCC
** * *
23004886 TGTACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGCGGAGCAAGCT
196 TACACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAAGCT
23004951 AAAAATAGCAGATCGAAGTCACCAGCCTTGCCTCCTTAGGTTGCAGCGAAGCAGGCTAAAA
261 AAAAATAGCAGATCGAAGTCACCAGCCTTGCCTCCTTAGGTTGCAGCGAAGCAGGCTAAAA
* *
23005012 ATAACAAATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGGCACCAGCCTTGCCTCCCTA
1 ATAACAAATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTA
*
23005077 GGTTGCAGCGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCGAA-AACGAAGCAGATC
66 GGTTGCAACGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACC-AACAACGAAGCAGATC
* *
23005141 GAAGTCACCAGCCTTGCCTCCCTGGGTTACAGTGGAACAGGCTAAAAATATCAGATCTTGCCTTC
130 GAAGTCACCAACCTTGCCTCCCTGGGTTACAGTGGAACAGGCTAAAAATAGCAGATCTTGCCTTC
* * * * *
23005206 CTACACCGACAGCGAAGCAGATCGAAGACACCGGCCTTGCCTCCCTAGGTTGCAGTGGAGCAGGT
195 CTACACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAAGC
23005271 TAAAAATAGCAGATC
260 TAAAAATAGCAGATC
23005286 TTGCCTTCCT
Statistics
Matches: 250, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
321 248 0.99
322 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.24, T:0.19
Consensus pattern (321 bp):
ATAACAAATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTA
GGTTGCAACGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAACGAAGCAGATCG
AAGTCACCAACCTTGCCTCCCTGGGTTACAGTGGAACAGGCTAAAAATAGCAGATCTTGCCTTCC
TACACCAACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCGGAGCAAGCT
AAAAATAGCAGATCGAAGTCACCAGCCTTGCCTCCTTAGGTTGCAGCGAAGCAGGCTAAAA
Found at i:23005340 original size:176 final size:176
Alignment explanation
Indices: 23004957--23005362 Score: 523
Period size: 176 Copynumber: 2.3 Consensus size: 176
23004947 AGCTAAAAAT
* * * * * *
23004957 AGCAGATCGAAGTCACCAGCCTTGCCTCCTTAGGTT-GCAG-CGAAGCAGGCTAAAAATAACAAA
1 AGCAGATCGAAGACACCAACCCTACCTCCCT-GGTTAGCAGTGGAA-CAGGCTAAAAATAACAAA
* *
23005020 TCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGGCACCAGCCTTGCCTCCCTAGGTTGCAG
64 TCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAG
23005085 CGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCGAAAACGA
129 CGGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCGAAAACGA
* * * * * *
23005133 AGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTTA-CAGTGGAACAGGCTAAAAATATCAGAT
1 AGCAGATCGAAGACACCAACCCTACCTCCCT-GGTTAGCAGTGGAACAGGCTAAAAATAACAAAT
* *
23005197 CTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCGGCCTTGCCTCCCTAGGTTGCAGT
65 CTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGC
* * * *
23005262 GGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTTCACCGAGAGCGA
130 GGAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCGAAAACGA
* * * * *
23005309 AGCAGATTGATGAC-CTCAACCCTATCTCCCTGGTTAGCAGTGGAATAGGTTAAA
1 AGCAGATCGAAGACAC-CAACCCTACCTCCCTGGTTAGCAGTGGAACAGGCTAAA
23005363 GATTGTGAAT
Statistics
Matches: 204, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
175 6 0.03
176 195 0.96
177 3 0.01
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (176 bp):
AGCAGATCGAAGACACCAACCCTACCTCCCTGGTTAGCAGTGGAACAGGCTAAAAATAACAAATC
TTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCG
GAGCAGGCTAAAAATAGCAGATCTTGCCTTCCTGCACCGAAAACGA
Found at i:23005395 original size:44 final size:44
Alignment explanation
Indices: 23005329--23005516 Score: 270
Period size: 44 Copynumber: 4.3 Consensus size: 44
23005319 TGACCTCAAC
*
23005329 CCTATCTCCCTGGTTAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* *
23005373 CCTATCTCCCTGGACAGTAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* * *
23005417 CCTATCTCCCTGGTCAGCAGTGGAATAGATTGAAGATTGT-AGGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGA-AT
* * * *
23005461 CATATCTCCCTGTTCAGCAGTGGAATTGGTTAAAGATCGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
23005505 CCTATCTCCCTG
1 CCTATCTCCCTG
23005517 AGCAGTAGTA
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
43 1 0.01
44 124 0.98
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
Found at i:23005941 original size:44 final size:43
Alignment explanation
Indices: 23005841--23006002 Score: 136
Period size: 44 Copynumber: 3.8 Consensus size: 43
23005831 ATGGCAAATT
*
23005841 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATC
1 TTATCTCCCTGAAGTTGCAGT-GAGCAGATTAAAACCGATAATC
* * * *
23005885 CTATCACCCTGAAGTTGCAGTGATGCAGATTAAAACC-TTGGATC
1 TTATCTCCCTGAAGTTGCAGTGA-GCAGATTAAAACCGAT-AATC
* * ** * *
23005929 TTATCTCTCTGAAGTTGCAGAGAGCAGA--ACGCATC--TAGTC
1 TTATCTCCCTGAAGTTGCAGTGAGCAGATTA-AAACCGATAATC
*
23005969 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA
1 TTATCTCCCTGAAGTTGCAGT-GAGCAGATTAAA
23006003 TAAACAAATC
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
40 21 0.22
41 9 0.10
42 2 0.02
43 9 0.10
44 53 0.56
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGAGCAGATTAAAACCGATAATC
Found at i:23006069 original size:128 final size:128
Alignment explanation
Indices: 23005841--23006092 Score: 305
Period size: 128 Copynumber: 2.0 Consensus size: 128
23005831 ATGGCAAATT
* ** *
23005841 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCACCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAAACGATAATCCTATCACCCTAAAGTTGCAGT
* * *
23005906 GATGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCA-GAGAGCAGAACGCATCTAGTC
66 GATG-AGATTAAAACCATGGATCTTATCTCTCTGAAATTACAGGAGAGCAGAACGCATCTAGTC
* * *
23005969 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAAC-A-AATCCTATCTCCCTAAATTTGTA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAA-AAACGATAATCCTATCACCCTAAAGTTGCA
* ** *
23006032 GTGGAGTG-GATTAGAATGATGGATCTTATCTCTCTGAAATTACAGGAGAGCAGATCGCATC
64 GT-GA-TGAGATTAAAACCATGGATCTTATCTCTCTGAAATTACAGGAGAGCAGAACGCATC
23006093 AAATTCATCT
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
128 80 0.76
129 21 0.20
130 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.28
Consensus pattern (128 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAAACGATAATCCTATCACCCTAAAGTTGCAGT
GATGAGATTAAAACCATGGATCTTATCTCTCTGAAATTACAGGAGAGCAGAACGCATCTAGTC
Found at i:23006406 original size:21 final size:21
Alignment explanation
Indices: 23006377--23006420 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
23006367 ATCGTCGAGG
*
23006377 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
23006398 ATATACAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
23006419 AT
1 AT
23006421 GTAATCTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:23006426 original size:19 final size:19
Alignment explanation
Indices: 23006376--23006454 Score: 77
Period size: 21 Copynumber: 3.8 Consensus size: 19
23006366 AATCGTCGAG
*
23006376 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
23006395 GATATATACAATCTTAGATAT
1 GATATGT--AATCTTAGATAT
23006416 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTT---AGATAT
*
23006438 GATTTTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
23006455 GATTTAATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
19 11 0.22
20 3 0.06
21 18 0.36
22 8 0.16
23 10 0.20
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.39
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:23006438 original size:22 final size:23
Alignment explanation
Indices: 23006410--23006454 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
23006400 ATACAATCTT
23006410 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
23006432 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
23006455 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:23006464 original size:22 final size:23
Alignment explanation
Indices: 23006420--23006464 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
23006410 AGATATGATA
*
23006420 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
23006443 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
23006465 GTAGATAGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:23006650 original size:19 final size:21
Alignment explanation
Indices: 23006626--23006664 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
23006616 ACTGTTTTCT
*
23006626 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
23006645 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
23006665 TTAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:23006886 original size:12 final size:13
Alignment explanation
Indices: 23006869--23006904 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
23006859 TTTTAGTCTA
23006869 TTTTATTAATT-T
1 TTTTATTAATTAT
23006881 TTTTATT-ATTAT
1 TTTTATTAATTAT
23006893 TTTTATT-ATTAT
1 TTTTATTAATTAT
23006905 ATTATATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 3 0.13
12 20 0.87
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (13 bp):
TTTTATTAATTAT
Found at i:23006889 original size:3 final size:3
Alignment explanation
Indices: 23006883--23006922 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
23006873 ATTAATTTTT
*
23006883 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T
23006923 ACCTACATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:23006891 original size:15 final size:15
Alignment explanation
Indices: 23006867--23006922 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
23006857 GTTTTTAGTC
23006867 TATT-TTATTAATTTT
1 TATTATTATT-ATTTT
23006882 T-TTATTATTATTTT
1 TATTATTATTATTTT
*
23006896 TATTATTA-TATTATA
1 TATTATTATTATT-TT
23006911 TATTATTATTAT
1 TATTATTATTAT
23006923 ACCTACATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 12 0.33
15 21 0.58
16 3 0.08
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTATTATTATTTT
Found at i:23007008 original size:15 final size:16
Alignment explanation
Indices: 23006984--23007016 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23006974 AAACGTTTTA
*
23006984 ATATATATACA-TATT
1 ATATACATACATTATT
23006999 ATATACATACATTATT
1 ATATACATACATTATT
23007015 AT
1 AT
23007017 TATTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATACATACATTATT
Found at i:23015688 original size:33 final size:33
Alignment explanation
Indices: 23015646--23015782 Score: 204
Period size: 33 Copynumber: 4.2 Consensus size: 33
23015636 TTGGAAGGGT
*
23015646 TCATCATCATCATCTCCGTCGTCTTTGTCGTTG
1 TCATCATCATCATCTCCGTCGTCTTCGTCGTTG
*
23015679 TCATCATCATCATCTCCGTCGTCTTCATCGTTG
1 TCATCATCATCATCTCCGTCGTCTTCGTCGTTG
*
23015712 TCATCATCATCATCTCCGTCATCTTCGTCGTTG
1 TCATCATCATCATCTCCGTCGTCTTCGTCGTTG
* * *
23015745 TCATCATCATCATCAT-CATCGTCATCGTCATTG
1 TCATCATCATCATC-TCCGTCGTCTTCGTCGTTG
23015778 TCATC
1 TCATC
23015783 CTCTTCGCCC
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
33 94 0.99
34 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.12, T:0.39
Consensus pattern (33 bp):
TCATCATCATCATCTCCGTCGTCTTCGTCGTTG
Found at i:23015780 original size:12 final size:12
Alignment explanation
Indices: 23015712--23015782 Score: 54
Period size: 12 Copynumber: 5.9 Consensus size: 12
23015702 TTCATCGTTG
*
23015712 TCATCATCATCA
1 TCATCGTCATCA
*
23015724 TC-TCCGTCATCT
1 TCAT-CGTCATCA
* **
23015736 TCGTCGTTGTCA
1 TCATCGTCATCA
*
23015748 TCATCATCATCA
1 TCATCGTCATCA
*
23015760 TCATCGTCATCG
1 TCATCGTCATCA
*
23015772 TCATTGTCATC
1 TCATCGTCATC
23015783 CTCTTCGCCC
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
11 1 0.02
12 43 0.96
13 1 0.02
ACGTcount: A:0.20, C:0.32, G:0.10, T:0.38
Consensus pattern (12 bp):
TCATCGTCATCA
Found at i:23022151 original size:30 final size:28
Alignment explanation
Indices: 23022111--23022190 Score: 101
Period size: 30 Copynumber: 2.8 Consensus size: 28
23022101 TTTTTAGTAA
* *
23022111 AAAAAACATAAAAATCGTTAAAAATATATT
1 AAAAATCATAAAAAT-ATTAAAAATA-ATT
23022141 AAAAATCATAAAGAATATTAAAAATAATT
1 AAAAATCATAAA-AATATTAAAAATAATT
23022170 AAAAAT-AT-AAAATATTAAAAA
1 AAAAATCATAAAAATATTAAAAA
23022191 AGTATATAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
26 11 0.23
27 2 0.04
28 2 0.04
29 9 0.19
30 20 0.43
31 3 0.06
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.26
Consensus pattern (28 bp):
AAAAATCATAAAAATATTAAAAATAATT
Found at i:23022191 original size:10 final size:9
Alignment explanation
Indices: 23022131--23022190 Score: 63
Period size: 10 Copynumber: 6.6 Consensus size: 9
23022121 AAAATCGTTA
23022131 AAAATATATT
1 AAAA-ATATT
23022141 AAAAATCA-T
1 AAAAAT-ATT
23022150 AAAGAATATT
1 AAA-AATATT
23022160 AAAAATAATT
1 AAAAAT-ATT
23022170 AAAAATA-T
1 AAAAATATT
23022178 -AAAATATT
1 AAAAATATT
23022186 AAAAA
1 AAAAA
23022191 AGTATATAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
7 6 0.14
8 2 0.05
9 15 0.34
10 21 0.48
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (9 bp):
AAAAATATT
Found at i:23022217 original size:10 final size:9
Alignment explanation
Indices: 23022129--23022239 Score: 66
Period size: 9 Copynumber: 11.7 Consensus size: 9
23022119 TAAAAATCGT
23022129 TAAAAATATA
1 TAAAAAT-TA
*
23022139 TTAAAAATCA
1 -TAAAAATTA
23022149 TAAAGAA-TA
1 TAAA-AATTA
*
23022158 TTAAAAATAA
1 -TAAAAATTA
23022168 TTAAAAA-TA
1 -TAAAAATTA
23022177 TAAAATATTA
1 TAAAA-ATTA
*
23022187 -AAAAAGTA
1 TAAAAATTA
**
23022195 TATAATCTTA
1 TA-AAAATTA
23022205 TAAAAATTCA
1 TAAAAATT-A
23022215 TAAAAAATTA
1 T-AAAAATTA
*
23022225 TAAATATTA
1 TAAAAATTA
23022234 TAAAAA
1 TAAAAA
23022240 ATCAAATTAA
Statistics
Matches: 79, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
8 8 0.10
9 30 0.38
10 27 0.34
11 14 0.18
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:23022225 original size:20 final size:19
Alignment explanation
Indices: 23022129--23022241 Score: 79
Period size: 19 Copynumber: 5.9 Consensus size: 19
23022119 TAAAAATCGT
* *
23022129 TAAAAATATATTAAAAATCA
1 TAAAAAT-TATAAAAAATTA
* *
23022149 TAAAGAA-TATTAAAAATAA
1 TAAA-AATTATAAAAAATTA
*
23022168 TTAAAAA-TATAAAATATTA
1 -TAAAAATTATAAAAAATTA
* * **
23022187 -AAAAAGTATATAATCTTA
1 TAAAAATTATAAAAAATTA
23022205 TAAAAATTCATAAAAAATTA
1 TAAAAATT-ATAAAAAATTA
*
23022225 TAAATATTATAAAAAAT
1 TAAAAATTATAAAAAAT
23022242 CAAATTAATT
Statistics
Matches: 77, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
17 5 0.06
18 10 0.13
19 37 0.48
20 23 0.30
21 2 0.03
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.32
Consensus pattern (19 bp):
TAAAAATTATAAAAAATTA
Found at i:23022251 original size:28 final size:29
Alignment explanation
Indices: 23022185--23022256 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
23022175 TATAAAATAT
* * *
23022185 TAAAAAAGTATATAATCTTATAAAAATTCA
1 TAAAAAATTATA-AATATTATAAAAAATCA
23022215 TAAAAAATTATAAATATTATAAAAAATCA
1 TAAAAAATTATAAATATTATAAAAAATCA
**
23022244 -AATTAATTATAAA
1 TAAAAAATTATAAA
23022257 AATATAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 11 0.30
29 15 0.41
30 11 0.30
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.33
Consensus pattern (29 bp):
TAAAAAATTATAAATATTATAAAAAATCA
Found at i:23023024 original size:9 final size:9
Alignment explanation
Indices: 23023010--23023053 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
23023000 AATAAATGAT
23023010 TTTTTATAA
1 TTTTTATAA
**
23023019 TTTTTATTT
1 TTTTTATAA
23023028 TTTTTAT-A
1 TTTTTATAA
23023036 TTTTTATAA
1 TTTTTATAA
23023045 CTTTTTATA
1 -TTTTTATA
23023054 CGTTTACAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
8 7 0.23
9 15 0.50
10 8 0.27
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTTATAA
Found at i:23023032 original size:18 final size:17
Alignment explanation
Indices: 23023009--23023042 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
23022999 CAATAAATGA
23023009 TTTTTTATAATTTTTATT
1 TTTTTTAT-ATTTTTATT
23023027 TTTTTTATATTTTTAT
1 TTTTTTATATTTTTAT
23023043 AACTTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTATATTTTTATT
Found at i:23023059 original size:18 final size:18
Alignment explanation
Indices: 23023028--23023080 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
23023018 ATTTTTATTT
**
23023028 TTTTTATATTTTTATAAC
1 TTTTTATACGTTTATAAC
* *
23023046 TTTTTATACGTTTACAAG
1 TTTTTATACGTTTATAAC
* *
23023064 TTCTTAAACGTTTATAA
1 TTTTTATACGTTTATAA
23023081 TTTCTTTTTC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (18 bp):
TTTTTATACGTTTATAAC
Found at i:23023085 original size:18 final size:18
Alignment explanation
Indices: 23023038--23023086 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
23023028 TTTTTATATT
*
23023038 TTTATAACTTT-TTATACG
1 TTTATAA-TTTCTTAAACG
* *
23023056 TTTACAAGTTCTTAAACG
1 TTTATAATTTCTTAAACG
23023074 TTTATAATTTCTT
1 TTTATAATTTCTT
23023087 TTTCAATATT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 2 0.08
18 23 0.92
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTATAATTTCTTAAACG
Found at i:23023648 original size:2 final size:2
Alignment explanation
Indices: 23023641--23023676 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
23023631 AACCATTGTT
23023641 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
23023677 CTGTTTTCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:23027026 original size:18 final size:18
Alignment explanation
Indices: 23027003--23027045 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
23026993 ATTGGTTTGG
23027003 TTATTTTACTTAGTAGT-T
1 TTATTTTACTTAGT-GTAT
*
23027021 TTATTTAACTTAGTGTAT
1 TTATTTTACTTAGTGTAT
23027039 TTATTTT
1 TTATTTT
23027046 TCACAGGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.23, C:0.05, G:0.09, T:0.63
Consensus pattern (18 bp):
TTATTTTACTTAGTGTAT
Found at i:23044745 original size:13 final size:14
Alignment explanation
Indices: 23044727--23044759 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
23044717 TTATTTCCCA
23044727 TTATTTTATT-TAT
1 TTATTTTATTCTAT
*
23044740 TTATTTTATTCTTT
1 TTATTTTATTCTAT
23044754 TTATTT
1 TTATTT
23044760 CTAATACAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (14 bp):
TTATTTTATTCTAT
Found at i:23050760 original size:32 final size:32
Alignment explanation
Indices: 23050724--23050820 Score: 94
Period size: 32 Copynumber: 3.2 Consensus size: 32
23050714 TTGGTTTAGT
23050724 AAGTTTGTATGTGCATTAGTTTGCAAAATACC
1 AAGTTTGTATGTGCATTAGTTTGCAAAATACC
*** ** * *
23050756 AAGTTCCCATG-AAATTA--TT-CATAATAGC
1 AAGTTTGTATGTGCATTAGTTTGCAAAATACC
*
23050784 ATGTTTGTATGTGCATTAGTTTGCAAAATACC
1 AAGTTTGTATGTGCATTAGTTTGCAAAATACC
23050816 AAGTT
1 AAGTT
23050821 GCCGTTAAAT
Statistics
Matches: 45, Mismatches: 16, Indels: 8
0.65 0.23 0.12
Matches are distributed among these distances:
28 14 0.31
29 6 0.13
31 6 0.13
32 19 0.42
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
AAGTTTGTATGTGCATTAGTTTGCAAAATACC
Found at i:23050799 original size:60 final size:60
Alignment explanation
Indices: 23050726--23050846 Score: 215
Period size: 60 Copynumber: 2.0 Consensus size: 60
23050716 GGTTTAGTAA
23050726 GTTTGTATGTGCATTAGTTTGCAAAATACCAAGTTCCCATGAAATTATTCATAATAGCAT
1 GTTTGTATGTGCATTAGTTTGCAAAATACCAAGTTCCCATGAAATTATTCATAATAGCAT
* * *
23050786 GTTTGTATGTGCATTAGTTTGCAAAATACCAAGTTGCCGTTAAATTATTCATAATAGCAT
1 GTTTGTATGTGCATTAGTTTGCAAAATACCAAGTTCCCATGAAATTATTCATAATAGCAT
23050846 G
1 G
23050847 AATACGAGTT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (60 bp):
GTTTGTATGTGCATTAGTTTGCAAAATACCAAGTTCCCATGAAATTATTCATAATAGCAT
Found at i:23063141 original size:27 final size:27
Alignment explanation
Indices: 23063106--23063179 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
23063096 GGTTCACTAA
23063106 TGTGTTGGCGAGCTGGGGTTTGCTAGTCC
1 TGTG-TGGCGAGCTGGGGTTTGCTAGT-C
23063135 T-TGTGGCGAGCTGGGGTTTGCTAGTC
1 TGTGTGGCGAGCTGGGGTTTGCTAGTC
*
23063161 TGTTTGGCGA-CTGGGGTTT
1 TGTGTGGCGAGCTGGGGTTT
23063180 TCCAGGATAG
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
26 11 0.26
27 29 0.67
28 2 0.05
29 1 0.02
ACGTcount: A:0.07, C:0.15, G:0.42, T:0.36
Consensus pattern (27 bp):
TGTGTGGCGAGCTGGGGTTTGCTAGTC
Found at i:23064696 original size:56 final size:50
Alignment explanation
Indices: 23064609--23064848 Score: 176
Period size: 50 Copynumber: 4.7 Consensus size: 50
23064599 ATTTGGGTAA
* * * *
23064609 AGAGATCCCATGTAAGACTATGTCTAAGACATGGCATTGACATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTG---GCATTGAG---ATG
* * *
23064665 AGAGGTCCCATGTAAGACCATGTGTGGGACATGGCGTTGGCATTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATTGAGATG
** * * * *
23064715 AGAGGTCCCCCGTAAGACCATGTCTTGGACATGGCATGGGCACTGATATG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATTGAGATG
** * * * * * * * *
23064765 AGAACTCCCATGTAATACCATATCTGGGATATGGTATTGGCAGT-ACAAG
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATTGAGATG
* ** *
23064814 AAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGC
23064849 TTTGACATGT
Statistics
Matches: 149, Mismatches: 35, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
49 31 0.21
50 78 0.52
53 7 0.05
56 33 0.22
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATTGAGATG
Found at i:23064721 original size:50 final size:50
Alignment explanation
Indices: 23064662--23064848 Score: 187
Period size: 50 Copynumber: 3.8 Consensus size: 50
23064652 CATTGAGATT
* * * *
23064662 ATGAGAGGTCCCATGTAAGACCATGTGTGGGACATGGCGTTGGCATTGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAC
** * * *
23064712 ATGAGAGGTCCCCCGTAAGACCATGTCTTGGACATGGCATGGGCACTGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAC
** * * * * *
23064762 ATGAGAACTCCCATGTAATACCATATCTGGGATATGGTATTGGCAGT-AC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAC
* * **
23064811 AAGAAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
23064849 TTTGACATGT
Statistics
Matches: 109, Mismatches: 28, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
49 31 0.28
50 78 0.72
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAC
Found at i:23078720 original size:52 final size:52
Alignment explanation
Indices: 23078654--23078946 Score: 349
Period size: 52 Copynumber: 5.7 Consensus size: 52
23078644 ATTTTCTAAC
* * *
23078654 GAGTGATCAGGTTCCGTTATGAGTATATTCCTTACTAAGTTTTGAAATGTGT
1 GAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAATGTGT
* * * * *
23078706 GAGTGATCAAGTTCCGTTATGAGTATGTTTCATACTACGTTTTGAAAAGTGT
1 GAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAATGTGT
* * *
23078758 GAGTGATTAGGTTCCATTATGATTATGTTCCATACTAAGTTTTCAAATGTGT
1 GAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAATGTGT
* ** * *
23078810 GAGTGATCATGTTTTGTTATGATTATATTCCATACTAAGTTTTCAAATGTGT
1 GAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAATGTGT
* * * * *
23078862 TAGTGAACAAGTTCTGTTTATGAGTATGTTCCATAC--AGTTTTC-AATAGTAT
1 GAGTGATCAGGTTCCG-TTATGAGTATGTTCCATACTAAGTTTTCAAAT-GTGT
*
23078913 GAGTGATCAGGTTTCGTTATGAGTATGTTCCATA
1 GAGTGATCAGGTTCCGTTATGAGTATGTTCCATA
23078947 ATCGTCAGAG
Statistics
Matches: 207, Mismatches: 32, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
50 21 0.10
51 21 0.10
52 148 0.71
53 17 0.08
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (52 bp):
GAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAATGTGT
Found at i:23082478 original size:28 final size:28
Alignment explanation
Indices: 23082438--23082619 Score: 312
Period size: 28 Copynumber: 6.5 Consensus size: 28
23082428 TAAATTGTAC
23082438 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
23082466 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
23082494 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
23082522 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
23082550 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
23082578 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
23082605 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23082620 GACTTAATAT
Statistics
Matches: 150, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
27 24 0.16
28 126 0.84
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:23097432 original size:40 final size:40
Alignment explanation
Indices: 23097226--23097494 Score: 338
Period size: 40 Copynumber: 6.7 Consensus size: 40
23097216 GCAAACACAT
*
23097226 TTGCCTTCGGGTCTTAGCCCGGA-ATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
*
23097265 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
* *
23097304 TTGCCTTC-GGT--TAG-CCGGATATATCTCGCATATCCCGGAT-A
1 TTGCCTTCGGGTCATAGCCCGGATATA--T--CA-A-CTCGCATAA
* *
23097345 TATGCATATGCCGGTCATAGCCCGGATATATC-ACTCGCATAA
1 T-TGCCT-T-CGGGTCATAGCCCGGATATATCAACTCGCATAA
23097387 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
*
23097427 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
23097467 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCATAGCCCGGATATAT
23097495 TCCAATGCTC
Statistics
Matches: 204, Mismatches: 9, Indels: 33
0.83 0.04 0.13
Matches are distributed among these distances:
35 9 0.04
36 3 0.01
37 1 0.00
38 3 0.01
39 63 0.31
40 82 0.40
41 12 0.06
42 12 0.06
43 1 0.00
44 2 0.01
45 3 0.01
46 1 0.00
47 3 0.01
48 9 0.04
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
Found at i:23105834 original size:40 final size:40
Alignment explanation
Indices: 23105790--23106137 Score: 633
Period size: 40 Copynumber: 8.7 Consensus size: 40
23105780 GCAAACACAT
* *
23105790 TTGCCTTCGGGTCTTAGCCCGAACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23105830 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23105870 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23105910 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23105950 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23105990 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23106030 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23106070 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23106110 TTGCCTTCGGGTCATAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
23106138 TCCAATGCTC
Statistics
Matches: 299, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 299 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:23114185 original size:14 final size:14
Alignment explanation
Indices: 23114166--23114193 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23114156 ATAACTAAGA
23114166 ATGCTATGGAAAAG
1 ATGCTATGGAAAAG
23114180 ATGCTATGGAAAAG
1 ATGCTATGGAAAAG
23114194 GATAAAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.29, T:0.21
Consensus pattern (14 bp):
ATGCTATGGAAAAG
Found at i:23118040 original size:52 final size:52
Alignment explanation
Indices: 23117976--23118194 Score: 287
Period size: 52 Copynumber: 4.2 Consensus size: 52
23117966 CTCCATTTTC
* *
23117976 TGTGAGTGATCAGGTTCCATTATGAGTTTGTTCCATACTAAGTTTTCAAAAG
1 TGTGAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAAAG
* * *
23118028 TTTGAGTAATCAGGTTCCGTTATGAGTATGTTTCATACTAAGTTTT-AAAATG
1 TGTGAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAAA-G
* * * * *
23118080 TGTAAGTGATCAAGTTCCTTTATGATTATGTTCCATACTAAGTTCTCAAAAG
1 TGTGAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAAAG
* ** *
23118132 TGTGTGTGATCAGGTTTTGTTATGAGTATGTTCAATACTAAGTTTTCAAAAG
1 TGTGAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAAAG
*
23118184 TGCGAGTGATC
1 TGTGAGTGATC
23118195 GGTAATCTTC
Statistics
Matches: 141, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
51 4 0.03
52 133 0.94
53 4 0.03
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.40
Consensus pattern (52 bp):
TGTGAGTGATCAGGTTCCGTTATGAGTATGTTCCATACTAAGTTTTCAAAAG
Found at i:23123950 original size:25 final size:25
Alignment explanation
Indices: 23123916--23123965 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
23123906 AGTCTATTAA
23123916 GACTTGGTTAGGAAGTTGTTTTTCT
1 GACTTGGTTAGGAAGTTGTTTTTCT
23123941 GACTTGGTTAGGAAGTTGTTTTTCT
1 GACTTGGTTAGGAAGTTGTTTTTCT
23123966 ATAAATGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.08, G:0.28, T:0.48
Consensus pattern (25 bp):
GACTTGGTTAGGAAGTTGTTTTTCT
Found at i:23144729 original size:79 final size:82
Alignment explanation
Indices: 23144618--23144802 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
23144608 GCTACTCGTT
* * *
23144618 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
23144681 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
23144698 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
23144761 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
23144778 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23144803 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:23144802 original size:40 final size:40
Alignment explanation
Indices: 23144599--23144802 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
23144589 CGGAATTTAA
** *
23144599 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
23144639 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
23144679 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23144718 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
23144758 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
23144798 CCGGA
1 CCGGA
23144803 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:23152538 original size:39 final size:39
Alignment explanation
Indices: 23152509--23152689 Score: 181
Period size: 39 Copynumber: 4.6 Consensus size: 39
23152499 GCTACTCGTT
*
23152509 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
* *
23152548 CAATTGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
23152588 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
23152627 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCATTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAACTCGCA
23152667 C-AA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
23152690 ACATCATTCA
Statistics
Matches: 118, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
38 15 0.13
39 50 0.42
40 50 0.42
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:23152583 original size:40 final size:40
Alignment explanation
Indices: 23152509--23152690 Score: 205
Period size: 40 Copynumber: 4.7 Consensus size: 40
23152499 GCTACTCGTT
*
23152509 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
23152548 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
23152588 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
23152627 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCATTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
23152667 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23152691 CATCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
38 18 0.15
39 48 0.39
40 54 0.44
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:23152652 original size:79 final size:80
Alignment explanation
Indices: 23152509--23152690 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 80
23152499 GCTACTCGTT
* * * *
23152509 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
23152573 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
* **
23152588 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
23152651 GATATGGTCATTAGCA
65 GATATAGTAACTAGCA
23152667 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
23152691 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 9 0.10
78 16 0.18
79 62 0.70
80 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:23161415 original size:18 final size:19
Alignment explanation
Indices: 23161380--23161416 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
23161370 ACCTATCAGA
*
23161380 AGAAAATAAATGAAAAATT
1 AGAAAAGAAATGAAAAATT
23161399 AGAAAAGAAAT-AAAAATT
1 AGAAAAGAAATGAAAAATT
23161417 TAATTACAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.19
Consensus pattern (19 bp):
AGAAAAGAAATGAAAAATT
Found at i:23174482 original size:42 final size:42
Alignment explanation
Indices: 23174378--23174661 Score: 295
Period size: 42 Copynumber: 6.7 Consensus size: 42
23174368 GAGCCTCCAT
*
23174378 CACCTTGGTGGCTTGGATGTGTGGGAGCCTC-AGACACCATCGG
1 CACCTTGGT-GCTTGGATGTGCGGGAGCCTCGA-ACACCATCGG
* *
23174421 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
1 -CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
* * * *
23174464 CACCTTGGTGCATGGATGTGCGGGAGCATCGGACACCATTGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
* * * *
23174506 CACCTCGGTG-TTATGATGTGCGGGAGCCTCGGACACTATCGG
1 CACCTTGGTGCTT-GGATGTGCGGGAGCCTCGAACACCATCGG
* ** * * *
23174548 CAACCTAGGCCCTTGG-TCGTGTGGGAACCTCGAGCACCATCGG
1 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGG
* * *
23174591 CACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
* *
23174633 CACCTTGGTGCATGGATGAGCGGGAGCCT
1 CACCTTGGTGCTTGGATGTGCGGGAGCCT
23174662 TGAGTACCAA
Statistics
Matches: 199, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.01
42 129 0.65
43 59 0.30
44 10 0.05
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGG
Found at i:23174619 original size:85 final size:86
Alignment explanation
Indices: 23174391--23174661 Score: 261
Period size: 85 Copynumber: 3.2 Consensus size: 86
23174381 CTTGGTGGCT
* * *
23174391 TGGATGTGTGGGAGCCTC-AGACACCATCGGTAACCTTGATGCTTGGATGTGCGGGAGCCTCGAA
1 TGGATGTGTGGGAGCCTCGAGACACCATCGG-CACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
* **
23174455 CACCATCGGC-ACCTTGGTGCA
65 CACCATCGGCAACCTAGGCCCA
* * * * *
23174476 TGGATGTGCGGGAGCATCG-GACACCATTGGCACCTCGGTG-TTATGATGTGCGGGAGCCTCGGA
1 TGGATGTGTGGGAGCCTCGAGACACCATCGGCACCTTGGTGCTT-GGATGTGCGGGAGCCTCGGA
* *
23174539 CACTATCGGCAACCTAGGCCCT
65 CACCATCGGCAACCTAGGCCCA
* * *
23174561 TGG-TCGTGTGGGAACCTCGAG-CACCATCGGCACCTTGGTGCTTGGATGTACGAGAGCCTC-GA
1 TGGAT-GTGTGGGAGCCTCGAGACACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA
* **
23174623 GCACCATCGGC-ACCTTGGTGCA
65 -CACCATCGGCAACCTAGGCCCA
* *
23174645 TGGATGAGCGGGAGCCT
1 TGGATGTGTGGGAGCCT
23174662 TGAGTACCAA
Statistics
Matches: 149, Mismatches: 29, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
83 2 0.01
84 56 0.38
85 88 0.59
86 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (86 bp):
TGGATGTGTGGGAGCCTCGAGACACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAC
ACCATCGGCAACCTAGGCCCA
Found at i:23174628 original size:127 final size:127
Alignment explanation
Indices: 23174391--23174661 Score: 323
Period size: 127 Copynumber: 2.1 Consensus size: 127
23174381 CTTGGTGGCT
* * * ** *
23174391 TGGATGTGTGGGAGCCTCAGACACCATCGGTAACCTTGATGCTTGGATGTGCGGGAGCCTCGAAC
1 TGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGACCCTTGGATGTGCGGGAACCTCGAAC
* * * *
23174456 ACCATCGGCACCTTGGTGCATGGATGTGCGGGAGCATCGGACACCATTGGCACCTCGGTGTTA
66 ACCATCGGCACCTTGGTGCATGGATGTACGAGAGCATCGGACACCATCGGCACCTCGGTG-CA
* * * * *
23174519 T-GATGTGCGGGAGCCTCGGACACTATCGGCAACCTAGGCCCTTGG-TCGTGTGGGAACCTCGAG
1 TGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGACCCTTGGAT-GTGCGGGAACCTCGAA
* * *
23174582 CACCATCGGCACCTTGGTGCTTGGATGTACGAGAGCCTC-GAGCACCATCGGCACCTTGGTGCA
65 CACCATCGGCACCTTGGTGCATGGATGTACGAGAGCATCGGA-CACCATCGGCACCTCGGTGCA
*
23174645 TGGATGAGCGGGAGCCT
1 TGGATGTGCGGGAGCCT
23174662 TGAGTACCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
126 5 0.04
127 115 0.95
128 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (127 bp):
TGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGACCCTTGGATGTGCGGGAACCTCGAAC
ACCATCGGCACCTTGGTGCATGGATGTACGAGAGCATCGGACACCATCGGCACCTCGGTGCA
Found at i:23174950 original size:24 final size:23
Alignment explanation
Indices: 23174879--23174951 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 23
23174869 CCAGTTAGGT
* *
23174879 TCCCGGCGGTGCTCCGGTGATCCG
1 TCCC-GCGGTGCTCCGGTGAACCA
* *
23174903 TCCCAGCGGTGCTTCGGTGTACCA
1 TCCC-GCGGTGCTCCGGTGAACCA
*
23174927 TCCCGTCGGTGCTCCGGCGAACCA
1 TCCCG-CGGTGCTCCGGTGAACCA
23174951 T
1 T
23174952 TCCGGTAGCA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 1 0.03
24 39 0.98
ACGTcount: A:0.10, C:0.37, G:0.32, T:0.22
Consensus pattern (23 bp):
TCCCGCGGTGCTCCGGTGAACCA
Found at i:23175027 original size:42 final size:42
Alignment explanation
Indices: 23174975--23175137 Score: 137
Period size: 42 Copynumber: 3.9 Consensus size: 42
23174965 GCCCTTGGTC
* * * *
23174975 GTGCGGGAGCCTTGGGCACCATCGGCACCTCGGTGCTAGGAT
1 GTGCAGGAGCCTCGGACACCATCGGCACCTCGGTGCTTGGAT
* ** ** *
23175017 GTGCAGGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTT
1 GTGCAGGAGCCTCGGACACCATCGGC-ACCTCGGTGCTTGGAT
* * * * * * *
23175060 ATGCAGGAGCCTTGGGCGCCATCGACACTTCGGTGCTTCGAT
1 GTGCAGGAGCCTCGGACACCATCGGCACCTCGGTGCTTGGAT
* * *
23175102 GTGCGGGAGCCTCGGACGCCATCGGCATCTCGGTGC
1 GTGCAGGAGCCTCGGACACCATCGGCACCTCGGTGC
23175138 GAGTCTGACA
Statistics
Matches: 90, Mismatches: 30, Indels: 2
0.74 0.25 0.02
Matches are distributed among these distances:
42 60 0.67
43 30 0.33
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.20
Consensus pattern (42 bp):
GTGCAGGAGCCTCGGACACCATCGGCACCTCGGTGCTTGGAT
Found at i:23175111 original size:85 final size:85
Alignment explanation
Indices: 23174965--23175128 Score: 238
Period size: 85 Copynumber: 1.9 Consensus size: 85
23174955 GGTAGCATAG
* * * *
23174965 GCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCACCTCGGTGCTAGGATGTGCAGGAGCCTC
1 GCCCTTGGTCATGCAGGAGCCTTGGGCACCATCGACACCTCGGTGCTACGATGTGCAGGAGCCTC
23175030 GGACACCATCGGCAAACTAA
66 GGACACCATCGGCAAACTAA
* * * * *
23175050 GCCCTTGGTTATGCAGGAGCCTTGGGCGCCATCGACACTTCGGTGCTTCGATGTGCGGGAGCCTC
1 GCCCTTGGTCATGCAGGAGCCTTGGGCACCATCGACACCTCGGTGCTACGATGTGCAGGAGCCTC
*
23175115 GGACGCCATCGGCA
66 GGACACCATCGGCA
23175129 TCTCGGTGCG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 69 1.00
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (85 bp):
GCCCTTGGTCATGCAGGAGCCTTGGGCACCATCGACACCTCGGTGCTACGATGTGCAGGAGCCTC
GGACACCATCGGCAAACTAA
Found at i:23178847 original size:42 final size:42
Alignment explanation
Indices: 23178759--23179077 Score: 301
Period size: 42 Copynumber: 7.5 Consensus size: 42
23178749 GGTGGCTCGA
* * * * *
23178759 ATGTGTGGGAGCCTC-AGACACCATCGGTAACCTTGATGCTTAG
1 ATGTGCGGGAGCCTCGAG-CACCATCGG-CACCTTGGTCCTTGG
*
23178802 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGG
1 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCTTGG
* * * *
23178844 ATGTGCGGGAGCATCG-GACACCATCGGCAAACTAGGCCCTTGG
1 ATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTCCTTGG
* * * *
23178887 TTGTG-GGGAGCCTCGGAG-ACCATCTGCACCTCGGTGCTAT-G
1 ATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTCCT-TGG
* * *
23178928 ATGTGTGGGAGCCTCG-GACACTATCGGCAACCTAGG-CCGTTGG
1 ATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTCC-TTGG
* *
23178971 TTGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
1 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCTTGG
* *
23179013 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCATGG
1 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCTTGG
* *
23179055 ATGAGCGGGAGCCTTGAGCACCA
1 ATGTGCGGGAGCCTCGAGCACCA
23179078 AAGCTAAAGT
Statistics
Matches: 230, Mismatches: 32, Indels: 29
0.79 0.11 0.10
Matches are distributed among these distances:
40 1 0.00
41 14 0.06
42 141 0.61
43 70 0.30
44 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (42 bp):
ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCTTGG
Found at i:23178917 original size:84 final size:85
Alignment explanation
Indices: 23178803--23179041 Score: 333
Period size: 84 Copynumber: 2.8 Consensus size: 85
23178793 GATGCTTAGA
*
23178803 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGGATGTGCGGGAGCATCGGACACCAT
1 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGGATGTGCGGGAGCCTCGGACACCAT
23178868 CGGCAAACTAGGCCCTTGGT
66 CGGCAAACTAGGCCCTTGGT
* * * * *
23178888 TGTG-GGGAGCCTCGGAG-ACCATCTGCACCTCGGTGCTAT-GATGTGTGGGAGCCTCGGACACT
1 TGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGT-CCATGGATGTGCGGGAGCCTCGGACACC
* *
23178950 ATCGGCAACCTAGGCCGTTGGT
64 ATCGGCAAACTAGGCCCTTGGT
* *
23178972 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCA
1 TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGGATGTGCGGGAGCCTCGGA-CACCA
23179036 TCGGCA
65 TCGGCA
23179042 CCTTGGTGCA
Statistics
Matches: 133, Mismatches: 15, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
84 74 0.56
85 59 0.44
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.20
Consensus pattern (85 bp):
TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTCCATGGATGTGCGGGAGCCTCGGACACCAT
CGGCAAACTAGGCCCTTGGT
Found at i:23179067 original size:169 final size:169
Alignment explanation
Indices: 23178759--23179068 Score: 412
Period size: 169 Copynumber: 1.8 Consensus size: 169
23178749 GGTGGCTCGA
* *
23178759 ATGTGTGGGAGCCTCAGACACCATCGGTAACCTTGATGCTTAGATGTGCGGGAGCCTCGAGCACC
1 ATGTGTGGGAGCCTCAGACACCATCGGCAACCTTGAGGCTTAGATGTGCGGGAGCCTCGAGCACC
* *
23178824 ATCGGCACCTTGGTCCATGGATGTGCGGGAGCATCGGACACCATCGGCAAACTAGGCCCTTGGTT
66 ATCGGCACCTTGGTCCATGGATGTGCGGGAGCATCGGACACCATCGGCAAACTAGGCCCATGGAT
*
23178889 GTGGGGAGCCTCGGAGACCATCTGCACCTCGGTGCTATG
131 GAGGGGAGCCTCGGAGACCATCTGCACCTCGGTGCTATG
* * * *
23178928 ATGTGTGGGAGCCTCGGACACTATCGGCAACC-T-AGGCCGTTGGTTGTGCGGGAGCCTCGAGCA
1 ATGTGTGGGAGCCTCAGACACCATCGGCAACCTTGAGG-C-TTAGATGTGCGGGAGCCTCGAGCA
* * * * * **
23178991 CCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCATG
64 CCATCGGCACCTTGGTCCATGGATGTGCGGGAGCATCGGA-CACCATCGGCAAACTAGGCCCATG
23179054 GATGAGCGGGAGCCT
128 GATGAG-GGGAGCCT
23179069 TGAGCACCAA
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
167 2 0.02
168 16 0.13
169 103 0.85
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (169 bp):
ATGTGTGGGAGCCTCAGACACCATCGGCAACCTTGAGGCTTAGATGTGCGGGAGCCTCGAGCACC
ATCGGCACCTTGGTCCATGGATGTGCGGGAGCATCGGACACCATCGGCAAACTAGGCCCATGGAT
GAGGGGAGCCTCGGAGACCATCTGCACCTCGGTGCTATG
Found at i:23179309 original size:24 final size:24
Alignment explanation
Indices: 23179282--23179344 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
23179272 CCGGTTAGGT
* * * *
23179282 TCCCGGCAGTGTTCCGGCGATCCG
1 TCCCGACAGTGCTCCAGCGAACCG
*
23179306 TCCCGACGGTGCTCCAGCGAACCG
1 TCCCGACAGTGCTCCAGCGAACCG
* *
23179330 TCCCGTCGGTGCTCC
1 TCCCGACAGTGCTCC
23179345 GGTGAACTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.10, C:0.41, G:0.30, T:0.19
Consensus pattern (24 bp):
TCCCGACAGTGCTCCAGCGAACCG
Found at i:23179351 original size:24 final size:24
Alignment explanation
Indices: 23179294--23179351 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
23179284 CCGGCAGTGT
*
23179294 TCCGGCGATCCGTCCCGACGGTGC
1 TCCGGCGAACCGTCCCGACGGTGC
* *
23179318 TCCAGCGAACCGTCCCGTCGGTGC
1 TCCGGCGAACCGTCCCGACGGTGC
*
23179342 TCCGGTGAAC
1 TCCGGCGAAC
23179352 TGTTCCGGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.12, C:0.40, G:0.31, T:0.17
Consensus pattern (24 bp):
TCCGGCGAACCGTCCCGACGGTGC
Found at i:23179476 original size:43 final size:43
Alignment explanation
Indices: 23179365--23180304 Score: 665
Period size: 43 Copynumber: 22.1 Consensus size: 43
23179355 TCCGGTAGCA
* *
23179365 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * * *
23179407 TTGGTGCTAGGAT-GTGCAGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * * * *
23179450 TAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *** * *
23179492 TCGATGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* **
23179534 TCAGTG--CTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACC
1 T-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
*
23179577 TAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCAGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* ** * * * *
23179619 TTGGTGCTTAGAT-GTGCGAGAACCTCGCG-CACCATCGACAACC
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCG-GACACCATCGGCAACC
* *
23179662 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA-C
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * * ** *
23179704 TCGGTGCTATGAT-TTGCGGGAGCCTCGGACACTGTCGGCCACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* *
23179747 TAGGCCCTTGGTCGTGCGGGAACCTCGCG-CACCATCGGTAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCG-GACACCATCGGCAACC
* * *
23179790 TAGGCCCTTGGTCGTGCGAGAGGCTCAGG-CACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACC
* * * **
23179833 TAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
23179876 TAGGCCCTTGGTCGTGTGGGAGCCTCGGCCACCATCGGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
** * * *
23179918 TAGGTGCTGGGAT-GTCCGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
23179961 TAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGG-AACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* ** * * ***
23180003 TCGGTGCTATGAT-GTGCGAGAGCCTCGGACATTGTCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
23180046 TAGGCCGTTGGTCATGCGGGAGCCTC-GAGCACCATCGG-TACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* ** * * *
23180088 TTGGTGCTTGGAT-GTGCGGGAGCCTCCCG-TACCATCGGTAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCT-CGGACACCATCGGCAACC
* * * * *
23180131 TAGGCCCTTGGTCGTGTGAGAGGCTC-GAGCACCATTGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACC
* * * **
23180174 TAAGCCCTTGGTCGTGCGGGAGCCTAGGGCACCATCGGCAAAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
* * *
23180217 TAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGGC-CCC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
** * * *
23180259 TAGGTGCTGGGAT-GTACGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACC
23180302 TAG
1 TAG
23180305 TGTCATGGGT
Statistics
Matches: 694, Mismatches: 163, Indels: 81
0.74 0.17 0.09
Matches are distributed among these distances:
41 2 0.00
42 290 0.42
43 397 0.57
44 5 0.01
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC
Found at i:23179515 original size:85 final size:84
Alignment explanation
Indices: 23179365--23180304 Score: 687
Period size: 85 Copynumber: 11.0 Consensus size: 84
23179355 TCCGGTAGCA
* * * *
23179365 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGC
23179430 CTCGGACACCATCGGCAAAC
65 CTCGGACACCATCGGCAAAC
* * * * * *
23179450 TAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCACCTCGATGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTT-GATGTGCGGGAGC
* *
23179515 CTCGGGCACCATCGGC-ACC
65 CTCGGACACCATCGGCAAAC
* * ** ** *
23179534 TCAGTG--CTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGG
1 T-AG-GCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGG
* *
23179596 GAGCCTC-GAGCACCATCAGC-ACC
61 GAGCCTCGGA-CACCATCGGCAAAC
* ** * * * * * ** *
23179619 TTGGTGCTTAGAT-GTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGGGA
* *
23179683 GCCTCGGGCACCATCGG-TAAC
63 GCCTCGGACACCATCGGCAAAC
* ** * * * ** ** *
23179704 TCGGTGCTATGAT-TTGCGGGAGCCTCGGACACTGTCGGCCACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCTTGAT-GTGCGGGA
* * *
23179768 ACCTCGCG-CACCATCGGTAACC
63 GCCTCG-GACACCATCGGCAAAC
* * * * * ** *
23179790 TAGGCCCTTGGTCGTGCGAGAGGCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGGGAG
* * *
23179855 CCTCGGGCACCATCGGTAAAA
64 CCTCGGACACCATCGGCAAAC
* * * * *
23179876 TAGGCCCTTGGTCGTGTGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTCCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGC
23179941 CTCGGACACCATCGGCAAAC
65 CTCGGACACCATCGGCAAAC
* * * * *
23179961 TAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGGAACCTCGGTGCTATGATGTGCGAGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGC
*** *
23180026 CTCGGACATTGTCGGCAACC
65 CTCGGACACCATCGGCAAAC
* * * * *
23180046 TAGGCCGTTGGTCATGCGGGAGCCTCGAGCACCATCGGTACCTTGGTGCTTGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTT-GATGTGCGGGAGC
* * * *
23180111 CTCCCG-TACCATCGGTAACC
65 CT-CGGACACCATCGGCAAAC
* * * * * * * ** *
23180131 TAGGCCCTTGGTCGTGTGAGAGGCTCGAGCACCATTGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGAT-GTGCGGGAG
* * *
23180196 CCTAGGGCACCATCGGCAAAA
64 CCTCGGACACCATCGGCAAAC
* * * * *
23180217 TAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTACGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGATGTGCGGGAGC
23180282 CTCGGACACCATCGGCAAAC
65 CTCGGACACCATCGGCAAAC
23180302 TAG
1 TAG
23180305 TGTCATGGGT
Statistics
Matches: 684, Mismatches: 145, Indels: 52
0.78 0.16 0.06
Matches are distributed among these distances:
83 1 0.00
84 31 0.05
85 482 0.70
86 170 0.25
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGATGTGCGGGAGCC
TCGGACACCATCGGCAAAC
Found at i:23179770 original size:128 final size:128
Alignment explanation
Indices: 23179365--23180254 Score: 623
Period size: 128 Copynumber: 7.0 Consensus size: 128
23179355 TCCGGTAGCA
* * * ** * *
23179365 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTAGGAT-GTGCAGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * * * * * * *
23179428 GCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGG-CACC
64 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGTAACC
* *** * * *
23179492 TCGATGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGC-ACCTCAGTG--CTATGAT-GTGCG
1 TAGGCCCTT-GGTCGTGCGAGAGCCTC-GGCACCATCGGCAACCT-AG-GCCCT-TGGTCGTGCG
* ** * * *
23179552 GGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCAG-
61 GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGA-CACCATCGGT
*
23179615 CACC
125 AACC
* ** * * *
23179619 TTGGTGCTTAGAT-GTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGA
1 TAGGCCCTT-GGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * ** * ** **
23179683 GCCTCGGGCACCATCGG-TAACTCGGTGCTATGAT-TTGCGGGAGCCTCGGACACTGTCGGCCAC
64 GCCTCGGGCACCATCGGCAAACTAGGCCCT-TGATCGTGCGGGAGCCTCGGACACCATCGGTAAC
23179746 C
128 C
* * * *
23179747 TAGGCCCTTGGTCGTGCGGGAACCTCGCGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * * **
23179812 GCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAA
65 CCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGTAACC
* * * ** * *
23179876 TAGGCCCTTGGTCGTGTGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTCCGGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA
* * * * *
23179939 GCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGG-AACC
64 GCCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGTAACC
* ** * *** * *
23180003 TCGGTGCTATGAT-GTGCGAGAGCCTCGGACATTGTCGGCAACCTAGGCCGTTGGTCATGCGGGA
1 TAGGCCCT-TGGTCGTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * * ** * *
23180067 GCCTCGAGCACCATCGG-TACCTTGGTGCTTGGAT-GTGCGGGAGCCTCCCG-TACCATCGGTAA
64 GCCTCGGGCACCATCGGCAAACTAGGCCCTT-GATCGTGCGGGAGCCT-CGGACACCATCGGTAA
23180129 CC
127 CC
* * * * *
23180131 TAGGCCCTTGGTCGTGTGAGAGGCTCGAGCACCATTGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGAGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * *
23180196 CCTAGGGCACCATCGGCAAAATAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGG
65 CCTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGG
23180255 CCCCTAGGTG
Statistics
Matches: 599, Mismatches: 135, Indels: 56
0.76 0.17 0.07
Matches are distributed among these distances:
126 3 0.01
127 217 0.36
128 287 0.48
129 92 0.15
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (128 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
CTCGGGCACCATCGGCAAACTAGGCCCTTGATCGTGCGGGAGCCTCGGACACCATCGGTAACC
Found at i:23180144 original size:384 final size:382
Alignment explanation
Indices: 23179365--23180254 Score: 1019
Period size: 384 Copynumber: 2.3 Consensus size: 382
23179355 TCCGGTAGCA
* * * * ** *
23179365 TAGGCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAGGAT-GTGC-AGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGA-GA
* * * * **
23179428 GCCTC-GGACACCATCGGCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCACC
64 GCCTCAGG-CACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAAAA
* ** * * *
23179492 TCGATGCTTCGATGTGCGGGAGCCTCGGGCACCATCGGCACCTCAGTGCTATGATGTGCGGGAGC
128 TAGACCCTTCGATGTGCGGGAGCCTCGGCCACCATCGGCACCTCAGTGCTAGGATGTCCGGGAGC
** * * * * *
23179557 CTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAGCACCTTG
193 CTCGGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGAGCACCATCAGAACCTCG
*
23179622 GTGCTTAGATGTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGGGAGCCT
258 GTGCTTAGATGTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCATGCGGGAGCCT
* * * *
23179687 CGGGCACCATCGGTAACTCGGTGCTATGATTTGCGGGAGCCTCGGACACTGTCGGCCACC
323 CGAGCACCATCGGTAACTCGGTGCTATGATGTGCGGGAGCCTCGGACACTATCGGCAACC
* *
23179747 TAGGCCCTTGGTCGTGCGGGAACCTCGCGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAG
*
23179812 GCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAAT
65 CCTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AAAAT
* * * * *
23179877 AGGCCCTT-GGTCGTGTGGGAGCCTCGGCCACCATCGGCCCCT-AGGTGCTGGGATGTCCGGGAG
129 AGACCCTTCGAT-GTGCGGGAGCCTCGGCCACCATCGGCACCTCA-GTGCTAGGATGTCCGGGAG
* *
23179940 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATCGGAACCTC
192 CCTCGGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGAGCACCATCAGAACCTC
* *** * *
23180005 GGTGC-TATGATGTGCGAGAGCCTCG-GACATTGTCGGCAACCTAGGCCGTTGGTCATGCGGGAG
257 GGTGCTTA-GATGTGCGAGAACCTCGCG-CACCATCGACAACCTAGGCCCTTGGTCATGCGGGAG
* * * *
23180068 CCTCGAGCACCATCGGTACCTTGGTGCT-TGGATGTGCGGGAGCCTCCCGTAC-C-ATCGGTAAC
320 CCTCGAGCACCATCGGTAACTCGGTGCTAT-GATGTGCGGGAGCCT--CGGACACTATCGGCAAC
23180130 C
382 C
* * * * * * *
23180131 TAGGCCCTTGGTCGTGTGAGAGGCTCGAGCACCATTGGCAAACTAAGCCCTTGGTCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGAGAG
* * * *
23180196 CCT-AGGGCACCATCGGCAAAATAGGCCCTTGGTCGTACGGGAGCCTCGGCCACCATCGG
65 CCTCA-GGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
23180255 CCCCTAGGTG
Statistics
Matches: 430, Mismatches: 65, Indels: 24
0.83 0.13 0.05
Matches are distributed among these distances:
382 36 0.08
383 77 0.18
384 312 0.73
385 1 0.00
386 4 0.01
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (382 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTAGGCCCTTGGTCGTGCGAGAGC
CTCAGGCACCATCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAAAATAG
ACCCTTCGATGTGCGGGAGCCTCGGCCACCATCGGCACCTCAGTGCTAGGATGTCCGGGAGCCTC
GGACACCATCGGCAAACTAGGCCCTTGGTCATACGGGAGCCTCGAGCACCATCAGAACCTCGGTG
CTTAGATGTGCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGGTCATGCGGGAGCCTCGA
GCACCATCGGTAACTCGGTGCTATGATGTGCGGGAGCCTCGGACACTATCGGCAACC
Found at i:23180504 original size:22 final size:21
Alignment explanation
Indices: 23180474--23180532 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
23180464 ATACAATCGT
*
23180474 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
23180496 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
23180519 AGATTTGATTTGTA
1 AGATTTGATTTGTA
23180533 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:23185646 original size:21 final size:21
Alignment explanation
Indices: 23185617--23185674 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 21
23185607 ATACAATCGT
* *
23185617 AGATTTGATATGTACTCTTAG
1 AGATTTGATTTGTAATCTTAG
*
23185638 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
23185661 AGATTTGATTTGTA
1 AGATTTGATTTGTA
23185675 GATACCATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 8 0.26
22 9 0.29
23 14 0.45
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.45
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:23186148 original size:43 final size:43
Alignment explanation
Indices: 23186040--23186378 Score: 319
Period size: 43 Copynumber: 8.0 Consensus size: 43
23186030 GTCCGTGACA
* * * *
23186040 CTAGGCCCTTGGTGGTGCGAGAGCCTCGAGCACCATCAGC-AC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* ** * * * **
23186082 CTCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAAC
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *
23186125 CTAGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-AC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* ** * *
23186167 CTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGTAAC
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * *
23186210 CTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * * * *
23186253 CTAAGCCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTAAA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * *
23186296 ATAGGCCATTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-AC
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* *
23186338 CTCGACCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
23186379 CCTTAGTGGC
Statistics
Matches: 231, Mismatches: 59, Indels: 13
0.76 0.19 0.04
Matches are distributed among these distances:
42 97 0.42
43 134 0.58
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.18
Consensus pattern (43 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
Found at i:23186188 original size:85 final size:85
Alignment explanation
Indices: 23186040--23186445 Score: 349
Period size: 85 Copynumber: 4.7 Consensus size: 85
23186030 GTCCGTGACA
* * * *
23186040 CTAGGCCCTTGGTGGTGCGAGAGCCTCGAGCACCATCAGCACCTCGGTGCTAT-GATGGGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTCGGTGCT-TGGATGTGCGGGA
* **
23186104 GCCTCGGACACTGTCGGCAAC
65 GCCTCGGGCACCATCGGCAAC
* * *
23186125 CTAGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAG
*
23186190 CCTCGGGCACCATCGGTAAC
66 CCTCGGGCACCATCGGCAAC
* * * * ** ** * *
23186210 CTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTCGG-TCGTACGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGG
* * *
23186274 AGCCTTGGGCACCATCGGTAAA
64 AGCCTCGGGCACCATCGGCAAC
* * * ***
23186296 ATAGGCCATTGGTCGTGCGGGGGCCTCG-GCCACCATCGGCACCTCGACCCTTGG-TCGTGCGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGGCACCTCGGTGCTTGGAT-GTGCGGG
23186359 AGCCTCGGGCACCATCGGC-AC
64 AGCCTCGGGCACCATCGGCAAC
* * ** * *
23186380 CTTAGTG-GCTCGGAT-GTATGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCTTGGGATGTGC
1 C-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGAGCA-CCATCGGCACCTCGGTGCTT-GGATGTGC
23186443 GGG
61 GGG
23186446 CTAAAGAGGA
Statistics
Matches: 260, Mismatches: 50, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
84 2 0.01
85 163 0.63
86 85 0.33
87 9 0.03
88 1 0.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (85 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAG
CCTCGGGCACCATCGGCAAC
Found at i:23186194 original size:42 final size:42
Alignment explanation
Indices: 23186054--23186445 Score: 183
Period size: 43 Copynumber: 9.2 Consensus size: 42
23186044 GCCCTTGGTG
* * *
23186054 GTGCGAGAGCCTCGAGCACCATCAGCACCTCGGTGCTAT-GAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT-TGGAT
* ** * *
23186096 GGGCGGGAGCCTCG-GACACTGTCGGCAACC-TAGTCCCTTGG-T
1 GTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGT-GCTTGGAT
23186138 CGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
* * * * **
23186181 GTGCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAGCACCATCGG-CACCTTGGTGCTTGGAT
* * * * ** ** *
23186223 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTCGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
* * * * ** * *
23186266 CGTACGGGAGCCTTGGGCACCATCGGTAAAATAGG-CCATTGG-T
1 -GTGCGGGAGCCTCGAGCACCATCGG-CACCTTGGTGC-TTGGAT
* * ***
23186309 CGTGCGGGGGCCTCG-GCCACCATCGGCACCTCGACCCTTGG-T
1 -GTGCGGGAGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGAT
* * *
23186351 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTAGTGGCTCGGAT
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGAT
** *
23186395 GTATGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCTTGGGAT
1 GTGCGGGAGCCTCGAGCA-CCATCGGCACCTTGGTGCTT-GGAT
23186439 GTGCGGG
1 GTGCGGG
23186446 CTAAAGAGGA
Statistics
Matches: 275, Mismatches: 55, Indels: 38
0.75 0.15 0.10
Matches are distributed among these distances:
41 1 0.00
42 94 0.34
43 154 0.56
44 26 0.09
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
Found at i:23186274 original size:128 final size:127
Alignment explanation
Indices: 23186102--23186445 Score: 356
Period size: 128 Copynumber: 2.7 Consensus size: 127
23186092 TGATGGGCGG
* ** * * *
23186102 GAGCCTCGGACACTGTCGGCAACCTAGTCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCAACCTAGTCCCTCGGTCGTACGGGAGCCTCGGGCACCATCGGCAC
* *
23186167 CTTGGTGCTTGGATGTGCGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGA
66 CTTGGTGCTTGGATGTGCGGGAACCTCGGCCACCATCGG-AACCTAGACCCTTGGTCGTGCGA
* * * *
23186230 GAGGCTCGGGCACCATCGGCAAACTAAG-CCCTCGGTCGTACGGGAGCCTTGGGCACCATCGGTA
1 GAGCCTCGGGCACCATCGGCAACCT-AGTCCCTCGGTCGTACGGGAGCCTCGGGCACCATCGG-C
** * * ** * *
23186294 AAATAGG-CCATTGG-TCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGACCCTTGGTCGTGCG
64 ACCTTGGTGC-TTGGAT-GTGCGGGAACCTCGGCCACCATCGGAACCTAGACCCTTGGTCGTGCG
*
23186357 G
127 A
** *
23186358 GAGCCTCGGGCACCATCGGC-ACCTTAGTGGCTCGGAT-GTATGGGAGCCTCGGGCACCCATCGG
1 GAGCCTCGGGCACCATCGGCAACC-TAGTCCCTCGG-TCGTACGGGAGCCTCGGGCA-CCATCGG
23186421 CACCTTGGTGCTTGGGATGTGCGGG
63 CACCTTGGTGCTT-GGATGTGCGGG
23186446 CTAAAGAGGA
Statistics
Matches: 173, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
127 4 0.02
128 118 0.68
129 50 0.29
130 1 0.01
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (127 bp):
GAGCCTCGGGCACCATCGGCAACCTAGTCCCTCGGTCGTACGGGAGCCTCGGGCACCATCGGCAC
CTTGGTGCTTGGATGTGCGGGAACCTCGGCCACCATCGGAACCTAGACCCTTGGTCGTGCGA
Found at i:23190087 original size:20 final size:20
Alignment explanation
Indices: 23190040--23190088 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
23190030 AACCCTTTCG
*
23190040 GCATCGCAAGGACGGTACTC
1 GCATCGCGAGGACGGTACTC
*
23190060 GCATCGCGAGGACGGTGCTC
1 GCATCGCGAGGACGGTACTC
23190080 GCATCGCGA
1 GCATCGCGA
23190089 CCCCAGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.20, C:0.31, G:0.35, T:0.14
Consensus pattern (20 bp):
GCATCGCGAGGACGGTACTC
Found at i:23193204 original size:85 final size:85
Alignment explanation
Indices: 23193054--23195186 Score: 1738
Period size: 85 Copynumber: 25.0 Consensus size: 85
23193044 ACCGTCGGCC
* * * ** * *
23193054 CCTAGGTCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTCCGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
*
23193117 GAGCCTCGGACACCATCGGTAA
65 GAGCCTCGGGCACCATCGG-AA
** * * ** *
23193139 AGTAGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GTGCGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGG
* **
23193202 GAGCCTCGGACACTGTCGGCAA
65 GAGCCTCGGGCACCATCGG-AA
* * * *
23193224 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTCTTTGGAT-GTGCGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
*
23193287 GAGCCTTC-CGCACCATCGAGAA
65 GAGCC-TCGGGCACCATCG-GAA
* * * **
23193309 CCTAGGCCCTTGGTCGTGCGTGAGCCTCGGGCACTATCGGTAAAATAGGCCCTTGGTCGTGCGGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* **
23193374 AGCCTCGGCCACCATCGGCC
66 AGCCTCGGGCACCATCGGAA
** * * * * *
23193394 CCTAGGTGCTGGGAT-ATCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGG
1 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
*
23193458 GAGCCTCGGGCACCATCGGCA
65 GAGCCTCGGGCACCATCGGAA
* *** * * ** *
23193479 CCTCGTTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGTAACCTAGGCCCTTGGTCGTGCGG
1 CCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
23193543 GAGCCTCGAGCACCATCGGCA
65 GAGCCTCGGGCACCATCGGAA
* ** ** *
23193564 CCTTGGTGCTTGGAT-GTGCGGGAGCCTCCCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
1 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
23193628 GAGGCTCGGGCACCATTGGCAA
65 GAGCCTCGGGCACCATCGG-AA
* * * * ** *
23193650 ACTAAGCCCTTGGTCGTGCGGGAACCTGGGGCACCATCGGCAAAATAGGCCATTGGTCGTGCGGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * * * **
23193715 AGTCGCGGCCACTATCGGCC
66 AGCCTCGGGCACCATCGGAA
** * * * *
23193735 CCTAGGTGCTGGGAT-GTGAGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGG
1 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
23193799 GAGCCTCGGGCACCATC-GACA
65 GAGCCTCGGGCACCATCGGA-A
* ** * * * *
23193820 CCTCGGTGCTATGAT-GGGCGGGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
1 CCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
*
23193884 GAGGCTCGGGCACCATCGGCAA
65 GAGCCTCGGGCACCATCGG-AA
* * * **
23193906 ACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * *
23193971 -GTCCTCGGCCAGCATCGGGA
66 AG-CCTCGGGCACCATCGGAA
* * * ** * *
23193991 CCTCGGCCATTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCAGAT-GTGCG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCT-TGGTCGTGCG
23194054 GGAGCCTCGGGCACCATCGGCAA
64 GGAGCCTCGGGCACCATCGG-AA
** * * * * ** * * *
23194077 AATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACTATCGGC-CCCTAAGTGCTGGGAT-GTCCGA
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
**
23194140 GAGCCTCGAACACCATCGGCAA
65 GAGCCTCGGGCACCATCGG-AA
* * ** * *
23194162 ACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCATTGGTCGTGTGGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
*
23194227 AGCCTCGGGCACCATCGGCA
66 AGCCTCGGGCACCATCGGAA
* ** ** * *
23194247 CCTTGGTGCTTGGAT-GTGCGGGAGCCTCCCGCACTATCGGCAACCTAGGCCCTTGGTCGTGCGA
1 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
*
23194311 GAGGCTCGGGCACCATCGGCAA
65 GAGCCTCGGGCACCATCGG-AA
* * **
23194333 ACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG-CCTTGGTCGTGCGGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* *
23194397 AGCCTCGGCCACCATCGG-C
66 AGCCTCGGGCACCATCGGAA
** * * * * *
23194416 CTCTAGGTGCTGGGAT-GT-CTGGGA-CCTCGGACACAATCGGCAAACTAGGCCCTTGGTCGAGC
1 C-CTAGGCCCTTGG-TCGTGC-GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
*
23194478 GGGAGCCTCGGGCACCATCGGCA
63 GGGAGCCTCGGGCACCATCGGAA
* *** * * * * **
23194501 CCTCGATGCTATGAT-GTACAGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGG
1 CCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
23194565 GAGCCTCGAGCACCATCGGCA
65 GAGCCTCGGGCACCATCGGAA
* ** ** * *
23194586 CCTTGGTGCTTGGAT-GTGCGGGAGCCTCCCGCACCATCGGCAACCTAGGCCCTTGGCCGTGCGA
1 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
23194650 GAGGCC-CGGGCACCATCGGCAA
65 GA-GCCTCGGGCACCATCGG-AA
* * * * * * * * **
23194672 ACTAAGACATTGGTCGTGCGGGAGCCTGGGGCGCTATCAGCAAAATAGGCCCTTGGTCGTGCGGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* **
23194737 AGCCTCGGCCACCATCGGCC
66 AGCCTCGGGCACCATCGGAA
** * * * * * *
23194757 CCTAGGTGCTGGGAT-GTGCGGGAGCCTTGGACACCATCGGTAAACTAGGCCCTTGGTCGTGCTG
1 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
*
23194821 GAGCCTCGGGCACCATCGGCA
65 GAGCCTCGGGCACCATCGGAA
* ** * * * **
23194842 CCTCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGG
1 CCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
23194906 GAGCCTCGAGCACCATCGGCA
65 GAGCCTCGGGCACCATCGGAA
* ** * *
23194927 CCTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
1 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
23194991 GAGGCTCGGGCACAATCGGCAA
65 GAGCCTCGGGCACCATCGG-AA
* * * ** * *
23195013 ACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTAGTCGAGCGGG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * * *
23195078 GGCCTCGGCCACTATCGGGA
66 AGCCTCGGGCACCATCGGAA
* * * * ** *
23195098 CCTCGGCACTTGGTCGTGCGGGAGCCTCAGGCACCATCGGC-ACCTTGGTGGCTCGGAT-GTGCG
1 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCG
*
23195161 GGAGCCTCGGGCACCCATCGGCA
64 GGAGCCTCGGGCA-CCATCGGAA
23195184 CCT
1 CCT
23195187 TGGTGCCTAG
Statistics
Matches: 1659, Mismatches: 339, Indels: 99
0.79 0.16 0.05
Matches are distributed among these distances:
83 23 0.01
84 76 0.05
85 1142 0.69
86 417 0.25
87 1 0.00
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (85 bp):
CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
AGCCTCGGGCACCATCGGAA
Found at i:23193336 original size:128 final size:127
Alignment explanation
Indices: 23193055--23195186 Score: 1682
Period size: 128 Copynumber: 16.7 Consensus size: 127
23193045 CCGTCGGCCC
* * * ** * *
23193055 CTAGGTCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTCCGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
* ** * *
23193118 AGCCTCGGACACCATCGGTAAAGTAGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCATCGGC-AC
65 AGCCTCGG-CACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** * * **
23193182 CTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * * *
23193246 AGCCTCGAGCACCATCGGCACCTTGGTCTTTGGAT-GTGCGGGAGCCTTC-CGCACCATCGAG-A
65 AGCCTCG-GCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCC-TCGGGCACCATCG-GCA
*
23193308 AC
126 AA
* * * **
23193310 CTAGGCCCTTGGTCGTGCGTGAGCCTCGGGCACTATCGGTAAAATAGGCCCTTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* ** * * * *
23193375 GCCTCGGCCACCATCGGCCCCTAGGTGCTGGGAT-ATCCGGGAGCCTCGGACACCATCGGCAAA
66 GCCTCGG-CACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* *** *
23193438 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGTTGCTATGAT-GTGCGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGG
** * * *
23193501 AGCCTCGGACACTGTCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-AC
65 AGCCTCGG-CACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** ** *
23193565 CTTGGTGCTTGGAT-GTGCGGGAGCCTCCCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * * * * *
23193629 AGGCTCGGGCACCATTGGCAAACTAAGCCCTTGGTCGTGCGGGAACCTGGGGCACCATCGGCAAA
65 AGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * * * * * ** * *
23193694 ATAGGCCATTGGTCGTGCGGGAGTCGCGGCCACTATCGGC-CCCTAGGTGCTGGGAT-GTGAGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
* * *
23193757 AGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGAC-AC
65 AGCCTCGG-CACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** * * * *
23193821 CTCGGTGCTATGAT-GGGCGGGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * * *
23193885 AGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAAA
65 AGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * * * *
23193950 ATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCATCGG-GACCTCGGCCATTGGTCGTGCGGG
1 CTAGGCCCTTGGTCGTGCGGGAG-CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* ** * *
23194013 AGCCTCGGGCACCATCGGCACCTTGGTGGCTCAGAT-GTGCGGGAGCCTCGGGCACCATCGGCAA
65 AGCCTC-GGCACCATCGGCACCTAGG-CCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
23194077 A
127 A
* * * * * ** * * *
23194078 ATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACTATCGGC-CCCTAAGTGCTGGGAT-GTCCGAG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
* * * ** *
23194141 AGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACTGTCGGCAAC
65 AGCCTCG-GCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * **
23194206 CTAGGCCATTGGTCGTGTGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
* * * *
23194269 AGCCTCCCGCACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAA
65 AGCCT-CGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* **
23194334 CTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG-CCTTGGTCGTGCGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
** * * *
23194398 GCCTCGGCCACCATCGGC-CTCTAGGTGCTGGGAT-GT-CTGGGA-CCTCGGACACAATCGGCAA
66 GCCTCGG-CACCATCGGCAC-CTAGGCCCTTGG-TCGTGC-GGGAGCCTCGGGCACCATCGGCAA
23194459 A
127 A
* * *** * * *
23194460 CTAGGCCCTTGGTCGAGCGGGAGCCTCGGGCACCATCGGC-ACCTCGATGCTATGAT-GTACAGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGG
** * *
23194523 AGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-AC
65 AGCCTCGG-CACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** ** * *
23194587 CTTGGTGCTTGGAT-GTGCGGGAGCCTCCCGCACCATCGGCAACCTAGGCCCTTGGCCGTGCGAG
1 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* * * * * * * *
23194651 AGGCC-CGGGCACCATCGGCAAACTAAGACATTGGTCGTGCGGGAGCCTGGGGCGCTATCAGCAA
65 A-GCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
23194715 A
127 A
* * * ** *
23194716 ATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGCGGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGG
* * * * *
23194779 AGCCTTGGACACCATCGGTAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGGC-AC
65 AGCCTCGG-CACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* ** * * * **
23194843 CTCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGG
1 CTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGG
* ** * *
23194907 AGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCATCGGCAAC
65 AGCCTCG-GCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * * * *
23194971 CTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACAATCGGCAAACTAAGCCCTTGGTCGTACGGGA
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
** * * * * * * *
23195036 GCCTCGGGCACCATCGGCAAAATAGGCCCTTAGTCGAGCGGGGGCCTCGGCCACTATCGG-GAC
66 GCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
* * * * ** *
23195099 CTCGGCACTTGGTCGTGCGGGAGCCTCAGGCACCATCGGC-ACCTTGGTGGCTCGGAT-GTGCGG
1 CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGG
23195162 GAGCCTCGGGCACCCATCGGCACCT
64 GAGCCTC-GGCA-CCATCGGCACCT
23195187 TGGTGCCTAG
Statistics
Matches: 1584, Mismatches: 344, Indels: 153
0.76 0.17 0.07
Matches are distributed among these distances:
125 3 0.00
126 81 0.05
127 311 0.20
128 1039 0.66
129 150 0.09
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (127 bp):
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
GCCTCGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAA
Found at i:23193547 original size:256 final size:255
Alignment explanation
Indices: 23193048--23195183 Score: 1904
Period size: 256 Copynumber: 8.4 Consensus size: 255
23193038 GTTTAGACCG
* * * * ** *
23193048 TCGGCCCCTAGGTCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-
1 TCGGCACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * *
23193111 GTCCGGGAGCCTCGGACACCATCGGTAAAGTAGGCCCTTGGTCGTGCGGGAGGCTCGGGCACCAT
64 GTGCGAGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * ** * * ** * ** *
23193176 CGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCT-TGGT
129 CGGCAAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT
* * * *
23193238 CGTGCGGGAGCCTC-GAGCACCATCGGC-ACCTTGGTCTTTGGAT-GTGCGGGAGCCTTC-CGCA
192 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCC-TCGGGCA
23193299 CCA
253 CCA
* ** * * * **
23193302 TCGAGAACCTAGGCCCTTGGTCGTGCGTGAGCCTCGGGCACTATCGGTAAAATAGGCCCTTGGTC
1 TCG-GCACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** ** * * * *
23193367 GTGCGGGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-ATCCGGGAGCCTCGGACACCA
64 GTGCGAGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
*
23193430 TCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGTTGCTATGATG
128 TCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATG
** * *
23193495 TGCGGGAGCCTCGGACACTGTCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCA
193 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* **
23193558 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCCCGCACCATCGGCAACCTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * * * *
23193623 TGCGAGAGGCTCGGGCACCATTGGCAAACTAAGCCCTTGGTCGTGCGGGAACCTGGGGCACCATC
65 TGCGAGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * * * * * * **
23193688 GGCAAAATAGGCCATTGGTCGTGCGGGAGTCGCGGCCACTATCGGCCCCTAGGTGCTGGGATGTG
130 GGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTG
* *
23193753 AGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
195 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * *
23193814 TCGACACCTCGGTGCTATGATGGGCGGGAACCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCT-TGGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * *
23193879 TGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGGTCGTACGGGAGCCTCGGGCACCATC
65 TGCGAGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * * * *
23193944 GGCAAAATAGGCCCTTGGTCGTGCGGG-GTCCTCGGCCAGCATCGGGACCTC-G-GCCATTGGTC
130 GGCAAACTAGGCCCTTGGTCGTGCGGGAG-CCTCGGGCACCATCGGCACCTCGGTGCTA-TGAT-
* * ** * *
23194006 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCAGAT-GTGCGGGAGCCTCGGGCACC
192 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCT-TGGTCGTGCGGGAGCCTCGGGCACC
23194069 A
255 A
** ** * * * * ** *
23194070 TCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACTATCGGC-CCCTAAGTGCTGGGAT
1 TCGGC-ACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
* ** * **
23194134 -GTCCGAGAGCCTCGAACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACTG
63 CGTGCGAGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * *
23194198 TCGGCAACCTAGGCCATTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACCTTGGTGCT-TGGAT
128 TCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GAT
* * * *
23194262 GTGCGGGAGCCTCCCG-CACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCA
192 GTGCGGGAGCCT-CGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * ** **
23194326 TCGGCAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGG-CCTTGGTC
1 TCGGC-ACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** ** * * *
23194390 GTGCGGGAGCCTCGGCCACCATCGGC-CTCTAGGTGCTGGGAT-GT-CTGGGA-CCTCGGACACA
64 GTGCGAGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC-GGGAGCCTCGGGCACC
* *
23194451 ATCGGCAAACTAGGCCCTTGGTCGAGCGGGAGCCTCGGGCACCATCGGCACCTCGATGCTATGAT
127 ATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGAT
* * ** *
23194516 GTACAGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCA
192 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* ** *
23194580 TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCCCGCACCATCGGCAACCTAGGCCCTTGGCCG
1 TCGGCACCTAGGTGCTTGG-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * * * * *
23194645 TGCGAGAGGCC-CGGGCACCATCGGCAAACTAAGACATTGGTCGTGCGGGAGCCTGGGGCGCTAT
65 TGCGAGA-GCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * **
23194709 CAGCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGT
129 CGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGT
* * * *
23194774 GCGGGAGCCTTGGACACCATCGGTAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCA
194 GCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * * **
23194836 TCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCG
1 TCGGCACCTAGGTGCT-TGGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
* * * * ** *
23194901 TGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAACCTCGGGCACCAT
65 TGCGAGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* * * * * ** ** *
23194964 CGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACAATCGGCAAACTAAGCCCT-TGGTC
129 CGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-
* * ** * * * * *
23195028 GTACGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTAGTCGAGCGGGGGCCTCGGCCACTA
192 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * ** * * ** *
23195092 TCGGGACCTCGGCACTTGGTCGTGCGGGAGCCTCAGGCACCATCGGC-ACCTTGGTGGCTCGGAT
1 TCGGCACCTAGGTGCTTGGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-T
*
23195156 -GTGCGGGAGCCTCGGGCACCCATCGGCA
63 CGTGCGAGAGCCTCGGGCA-CCATCGGCA
23195184 CCTTGGTGCC
Statistics
Matches: 1530, Mismatches: 299, Indels: 102
0.79 0.15 0.05
Matches are distributed among these distances:
253 41 0.03
254 160 0.10
255 296 0.19
256 972 0.64
257 59 0.04
258 2 0.00
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (255 bp):
TCGGCACCTAGGTGCTTGGTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
GCGAGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGC
GGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
Found at i:23195165 original size:43 final size:44
Alignment explanation
Indices: 23195113--23195206 Score: 145
Period size: 44 Copynumber: 2.2 Consensus size: 44
23195103 GCACTTGGTC
* *
23195113 GTGCGGGAGCCTCAGGCA-CCATCGGCACCTTGGTGGCTCGGAT
1 GTGCGGGAGCCTCAGGCACCCATCGGCACCTTGGTGCCTAGGAT
*
23195156 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTAGGAT
1 GTGCGGGAGCCTCAGGCACCCATCGGCACCTTGGTGCCTAGGAT
*
23195200 ATGCGGG
1 GTGCGGG
23195207 CTAAAGAGGA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
43 17 0.37
44 29 0.63
ACGTcount: A:0.14, C:0.30, G:0.38, T:0.18
Consensus pattern (44 bp):
GTGCGGGAGCCTCAGGCACCCATCGGCACCTTGGTGCCTAGGAT
Found at i:23204187 original size:25 final size:25
Alignment explanation
Indices: 23204159--23204206 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23204149 GAATTAATTA
*
23204159 TTCAAAACTCACCGTTTCAATTGAT
1 TTCAAAACGCACCGTTTCAATTGAT
**
23204184 TTCACCACGCACCGTTTCAATTG
1 TTCAAAACGCACCGTTTCAATTG
23204207 TGAAATTCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (25 bp):
TTCAAAACGCACCGTTTCAATTGAT
Found at i:23207553 original size:4 final size:5
Alignment explanation
Indices: 23207483--23207586 Score: 52
Period size: 5 Copynumber: 19.4 Consensus size: 5
23207473 ATGAACACAT
* *
23207483 AAAT- AAATA AATATC AAATA AAACA ATAATA ACAATA ACAATAA TAAATAA
1 AAATA AAATA AA-ATA AAATA AAATA A-AATA A-AATA A-AAT-A -AAAT-A
** *
23207534 AAATA TCTATA AAA-A TAAATA AAATA AAATA AAATA AAA-G AAATAA
1 AAATA -AAATA AAATA -AAATA AAATA AAATA AAATA AAATA AAAT-A
23207580 AAATA AA
1 AAATA AA
23207587 CATCGGTGGA
Statistics
Matches: 79, Mismatches: 11, Indels: 19
0.72 0.10 0.17
Matches are distributed among these distances:
4 8 0.10
5 35 0.44
6 29 0.37
7 6 0.08
8 1 0.01
ACGTcount: A:0.73, C:0.05, G:0.01, T:0.21
Consensus pattern (5 bp):
AAATA
Found at i:23207560 original size:31 final size:31
Alignment explanation
Indices: 23207483--23207567 Score: 77
Period size: 31 Copynumber: 2.7 Consensus size: 31
23207473 ATGAACACAT
*
23207483 AAATAAATAAATATCAAATAAAACAATAATAA
1 AAATAAATAAA-ATAAAATAAAACAATAATAA
* * *
23207515 CAATAACA-ATAAT-AAATAAAA-ATATCTATAA
1 AAATAA-ATAAAATAAAATAAAACA-AT-AATAA
23207546 AAATAAATAAAATAAAATAAAA
1 AAATAAATAAAATAAAATAAAA
23207568 TAAAAGAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
29 1 0.02
30 11 0.26
31 15 0.35
32 15 0.35
33 1 0.02
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (31 bp):
AAATAAATAAAATAAAATAAAACAATAATAA
Found at i:23207569 original size:19 final size:19
Alignment explanation
Indices: 23207483--23207586 Score: 61
Period size: 19 Copynumber: 5.1 Consensus size: 19
23207473 ATGAACACAT
*
23207483 AAATAAATAAATATCAAATA
1 AAATAAATAAA-ATAAAATA
*
23207503 AAACAATAATAACAATAACAAT-
1 AAA-TA-AATAA-AATAA-AATA
**
23207525 -AATAAATAAAAATATCTATAA
1 AAATAAAT-AAAATA-AAAT-A
23207546 AAATAAATAAAATAAAATA
1 AAATAAATAAAATAAAATA
23207565 AAATAAA-AGAAATAAAAATA
1 AAATAAATA-AAAT-AAAATA
23207585 AA
1 AA
23207587 CATCGGTGGA
Statistics
Matches: 66, Mismatches: 7, Indels: 22
0.69 0.07 0.23
Matches are distributed among these distances:
18 1 0.02
19 21 0.32
20 16 0.24
21 9 0.14
22 15 0.23
23 4 0.06
ACGTcount: A:0.73, C:0.05, G:0.01, T:0.21
Consensus pattern (19 bp):
AAATAAATAAAATAAAATA
Found at i:23207582 original size:10 final size:9
Alignment explanation
Indices: 23207544--23207582 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
23207534 AAATATCTAT
23207544 AAAAATAAA
1 AAAAATAAA
*
23207553 TAAAATAAA
1 AAAAATAAA
23207562 ATAAAATAAA
1 A-AAAATAAA
*
23207572 AGAAATAAA
1 AAAAATAAA
23207581 AA
1 AA
23207583 TAAACATCGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (9 bp):
AAAAATAAA
Found at i:23208302 original size:7 final size:7
Alignment explanation
Indices: 23208285--23208368 Score: 89
Period size: 7 Copynumber: 12.0 Consensus size: 7
23208275 ATGTTGTGAC
*
23208285 AAACCTT
1 AAACCCT
*
23208292 AAACCCC
1 AAACCCT
23208299 AAA-CCT
1 AAACCCT
*
23208305 CAGACCCT
1 -AAACCCT
*
23208313 AAACCCC
1 AAACCCT
*
23208320 AAACCCC
1 AAACCCT
*
23208327 AGACCCT
1 AAACCCT
*
23208334 AAACCAT
1 AAACCCT
23208341 AAACCCT
1 AAACCCT
23208348 AAACCCT
1 AAACCCT
23208355 AAACCCT
1 AAACCCT
23208362 AAACCCT
1 AAACCCT
23208369 CAGCCCTGAG
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
6 2 0.03
7 59 0.92
8 3 0.05
ACGTcount: A:0.42, C:0.44, G:0.02, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:23208405 original size:7 final size:7
Alignment explanation
Indices: 23208365--23208429 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
23208355 AAACCCTAAA
*
23208365 CCCTCAG
1 CCCTGAG
23208372 CCCTGAG
1 CCCTGAG
*
23208379 CCCCGAG
1 CCCTGAG
23208386 -CCTCGAG
1 CCCT-GAG
23208393 CCCTGAG
1 CCCTGAG
*
23208400 CTCTGAG
1 CCCTGAG
* *
23208407 CCTTGAC
1 CCCTGAG
23208414 CCCTGAG
1 CCCTGAG
*
23208421 CTCTGAG
1 CCCTGAG
23208428 CC
1 CC
23208430 TTGACCCCAG
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
6 2 0.04
7 40 0.89
8 3 0.07
ACGTcount: A:0.14, C:0.45, G:0.25, T:0.17
Consensus pattern (7 bp):
CCCTGAG
Done.