Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 82 of 214
Found at i:23208431 original size:21 final size:21
Alignment explanation
Indices: 23208372--23208437 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
23208362 AAACCCTCAG
* * * *
23208372 CCCTGAGCCCCGAGCCTCGAG
1 CCCTGAGCTCTGAGCCTTGAC
23208393 CCCTGAGCTCTGAGCCTTGAC
1 CCCTGAGCTCTGAGCCTTGAC
23208414 CCCTGAGCTCTGAGCCTTGAC
1 CCCTGAGCTCTGAGCCTTGAC
23208435 CCC
1 CCC
23208438 AGACCCAGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.14, C:0.44, G:0.24, T:0.18
Consensus pattern (21 bp):
CCCTGAGCTCTGAGCCTTGAC
Found at i:23208461 original size:20 final size:20
Alignment explanation
Indices: 23208433--23208483 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
23208423 CTGAGCCTTG
*
23208433 ACCCCAGACCCAGACCTAAA
1 ACCCTAGACCCAGACCTAAA
23208453 ACCCTAGACCCAGACCTAAA
1 ACCCTAGACCCAGACCTAAA
*
23208473 ACCATAGACCC
1 ACCCTAGACCC
23208484 TAAACCCTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.43, G:0.10, T:0.08
Consensus pattern (20 bp):
ACCCTAGACCCAGACCTAAA
Found at i:23208492 original size:7 final size:7
Alignment explanation
Indices: 23208480--23208533 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
23208470 AAAACCATAG
23208480 ACCCTAA
1 ACCCTAA
23208487 ACCCTAA
1 ACCCTAA
*
23208494 ACCCTCA
1 ACCCTAA
*
23208501 ACCCTCA
1 ACCCTAA
* *
23208508 ACCCCAG
1 ACCCTAA
* *
23208515 ACCCCAG
1 ACCCTAA
23208522 ACCCTAA
1 ACCCTAA
23208529 ACCCT
1 ACCCT
23208534 CAGCCCTGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.33, C:0.52, G:0.04, T:0.11
Consensus pattern (7 bp):
ACCCTAA
Found at i:23208504 original size:14 final size:14
Alignment explanation
Indices: 23208480--23208540 Score: 61
Period size: 14 Copynumber: 4.4 Consensus size: 14
23208470 AAAACCATAG
*
23208480 ACCCTAAACCCTAA
1 ACCCTAAACCCTCA
*
23208494 ACCCTCAACCCTCA
1 ACCCTAAACCCTCA
* *
23208508 ACCCCAGACCC-CA
1 ACCCTAAACCCTCA
23208521 GACCCTAAACCCTCA
1 -ACCCTAAACCCTCA
*
23208536 GCCCT
1 ACCCT
23208541 GAGCCTTGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
13 2 0.05
14 33 0.89
15 2 0.05
ACGTcount: A:0.31, C:0.52, G:0.05, T:0.11
Consensus pattern (14 bp):
ACCCTAAACCCTCA
Found at i:23208504 original size:21 final size:21
Alignment explanation
Indices: 23208478--23208533 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
23208468 CTAAAACCAT
23208478 AGACCCTAAACCCTAAACCCTC
1 AGACCCTAAACCCTAAACCC-C
* * *
23208500 A-ACCCTCAACCCCAGACCCC
1 AGACCCTAAACCCTAAACCCC
23208520 AGACCCTAAACCCT
1 AGACCCTAAACCCT
23208534 CAGCCCTGAG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 2 0.07
21 25 0.89
22 1 0.04
ACGTcount: A:0.34, C:0.50, G:0.05, T:0.11
Consensus pattern (21 bp):
AGACCCTAAACCCTAAACCCC
Found at i:23208559 original size:21 final size:21
Alignment explanation
Indices: 23208535--23208619 Score: 107
Period size: 21 Copynumber: 4.0 Consensus size: 21
23208525 CTAAACCCTC
* *
23208535 AGCCCTGAGCCTTGAGCCCTG
1 AGCCTTGAGCCCTGAGCCCTG
* *
23208556 AGCCTTGAGCCCCGAGCCCCG
1 AGCCTTGAGCCCTGAGCCCTG
23208577 AGCCTTGAGCCCTGAGCCCTG
1 AGCCTTGAGCCCTGAGCCCTG
* * *
23208598 AGCTTTAAGCCCTAAGCCCTG
1 AGCCTTGAGCCCTGAGCCCTG
23208619 A
1 A
23208620 ACCCTGAACC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.18, C:0.39, G:0.26, T:0.18
Consensus pattern (21 bp):
AGCCTTGAGCCCTGAGCCCTG
Found at i:23208564 original size:7 final size:7
Alignment explanation
Indices: 23208530--23208631 Score: 96
Period size: 7 Copynumber: 14.6 Consensus size: 7
23208520 AGACCCTAAA
*
23208530 CCCTCAG
1 CCCTGAG
23208537 CCCTGAG
1 CCCTGAG
*
23208544 CCTTGAG
1 CCCTGAG
23208551 CCCTGAG
1 CCCTGAG
*
23208558 CCTTGAG
1 CCCTGAG
*
23208565 CCCCGAG
1 CCCTGAG
*
23208572 CCCCGAG
1 CCCTGAG
*
23208579 CCTTGAG
1 CCCTGAG
23208586 CCCTGAG
1 CCCTGAG
23208593 CCCTGAG
1 CCCTGAG
** *
23208600 CTTTAAG
1 CCCTGAG
*
23208607 CCCTAAG
1 CCCTGAG
*
23208614 CCCTGAA
1 CCCTGAG
*
23208621 CCCTGAA
1 CCCTGAG
23208628 CCCT
1 CCCT
23208632 AAAAACTTTA
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 79 1.00
ACGTcount: A:0.18, C:0.42, G:0.23, T:0.18
Consensus pattern (7 bp):
CCCTGAG
Found at i:23208656 original size:14 final size:14
Alignment explanation
Indices: 23208647--23208705 Score: 73
Period size: 14 Copynumber: 4.1 Consensus size: 14
23208637 CTTTAAGCCT
*
23208647 TAAACCTTAAGCCC
1 TAAACCTTAAACCC
* *
23208661 TAAGCCTTAAAACC
1 TAAACCTTAAACCC
23208675 TAAACCTTAAACCC
1 TAAACCTTAAACCC
*
23208689 TAAACCCTAAAACCC
1 TAAA-CCTTAAACCC
23208704 TA
1 TA
23208706 CCCTTCAAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
14 27 0.71
15 11 0.29
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.20
Consensus pattern (14 bp):
TAAACCTTAAACCC
Found at i:23208681 original size:6 final size:7
Alignment explanation
Indices: 23208647--23208705 Score: 55
Period size: 7 Copynumber: 8.3 Consensus size: 7
23208637 CTTTAAGCCT
*
23208647 TAAACCT
1 TAAACCC
*
23208654 TAAGCCC
1 TAAACCC
* *
23208661 TAAGCCT
1 TAAACCC
*
23208668 TAAAACC
1 TAAACCC
*
23208675 TAAACCT
1 TAAACCC
23208682 TAAACCC
1 TAAACCC
23208689 TAAACCC
1 TAAACCC
23208696 TAAAACCC
1 T-AAACCC
23208704 TA
1 TA
23208706 CCCTTCAAGC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
7 35 0.83
8 7 0.17
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:23208710 original size:28 final size:28
Alignment explanation
Indices: 23208647--23208702 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
23208637 CTTTAAGCCT
* * *
23208647 TAAACCTTAAGCCCTAAGCCTTAAAACC
1 TAAACCTTAAACCCTAAACCCTAAAACC
23208675 TAAACCTTAAACCCTAAACCCTAAAACC
1 TAAACCTTAAACCCTAAACCCTAAAACC
23208703 CTACCCTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.34, G:0.04, T:0.20
Consensus pattern (28 bp):
TAAACCTTAAACCCTAAACCCTAAAACC
Found at i:23213801 original size:42 final size:42
Alignment explanation
Indices: 23213697--23214010 Score: 280
Period size: 42 Copynumber: 7.4 Consensus size: 42
23213687 GAGCCTCCAT
* *
23213697 CACCTTGGTGGCTCGGATGTGTGGGAGCCTCAGACACCATCGG
1 CACCTTGGT-GCTTGGATGTGTGGGAGCCTCGGACACCATCGG
* * *
23213740 TAACCTTGATGCTTGGATGTGTGGGAGCCTCAGACACCATCGG
1 -CACCTTGGTGCTTGGATGTGTGGGAGCCTCGGACACCATCGG
* * * *
23213783 CACCTTGGTGCATGGATGTGCGGGAGCATCGGACACAATCGG
1 CACCTTGGTGCTTGGATGTGTGGGAGCCTCGGACACCATCGG
* * * ** * *
23213825 AAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAGACCATCGG
1 -CACCTTGGTGCTTGGATGTGTGGGAGCCTCGGACACCATCGG
* **
23213867 CA-CTTCGGTGCTAT-GATGTGAGGGAGCCTCGGACACTGTCGG
1 CACCTT-GGTGCT-TGGATGTGTGGGAGCCTCGGACACCATCGG
* **
23213909 CAACCTAGGCCCTTGG-TCGTGTGGGAGCCTC-GAGCACCATCGG
1 C-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGA-CACCATCGG
* *
23213952 CACATTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGG
1 CACCTTGGTGCTTGGATGTGTGGGAGCCTCGGA-CACCATCGG
*
23213994 CACCTTGGTGCATGGAT
1 CACCTTGGTGCTTGGAT
23214011 AAGCAGGAGC
Statistics
Matches: 219, Mismatches: 41, Indels: 22
0.78 0.15 0.08
Matches are distributed among these distances:
40 2 0.01
41 10 0.05
42 126 0.58
43 72 0.33
44 9 0.04
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.22
Consensus pattern (42 bp):
CACCTTGGTGCTTGGATGTGTGGGAGCCTCGGACACCATCGG
Found at i:23213994 original size:85 final size:83
Alignment explanation
Indices: 23213700--23213995 Score: 314
Period size: 85 Copynumber: 3.5 Consensus size: 83
23213690 CCTCCATCAC
* * * * * ***
23213700 CTTGGTGGCTCGGATGTGTGGGAGCCTCAGACACCATCGGTAACCTTGATGCTTGGATGTGTGGG
1 CTTGGT-GCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TGTGTGGG
23213765 AGCCTC-AGACACCATCGGCA
64 AGCCTCGAG-CACCATCGGCA
* * * * *
23213785 CCTTGGTGCATGGATGTGCGGGAGCATCGGACACAATCGGAAAACTAGGCCCTTGGT-TGTGGGG
1 -CTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTGTGT-GGG
23213849 AGCCTCGGAG-ACCATCGGCA
64 AGCCTC-GAGCACCATCGGCA
* **
23213869 CTTCGGTGCTAT-GATGTGAGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGTGG
1 CTT-GGTGCT-TGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGT-GTGTGG
23213933 GAGCCTCGAGCACCATCGGCA
63 GAGCCTCGAGCACCATCGGCA
23213954 CATTGGTGCTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCA
1 C-TTGGTGCTTGGATGTGCGGGAGCCTCGGA-CACCATCGGCA
23213996 CCTTGGTGCA
Statistics
Matches: 177, Mismatches: 22, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
83 6 0.03
84 70 0.40
85 88 0.50
86 13 0.07
ACGTcount: A:0.19, C:0.26, G:0.34, T:0.21
Consensus pattern (83 bp):
CTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTGTGTGGGAG
CCTCGAGCACCATCGGCA
Found at i:23214020 original size:42 final size:42
Alignment explanation
Indices: 23213932--23214031 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
23213922 TGGTCGTGTG
* ** *
23213932 GGAGCCTCGAGCACCATCGGCACATTGGTGCTTGGATGTGCG
1 GGAGCCTCGAGCACCATCGGCACATTGGTGCATGGATAAGCA
*
23213974 GGAGCCTCGAGCACCATCGGCACCTTGGTGCATGGATAAGCA
1 GGAGCCTCGAGCACCATCGGCACATTGGTGCATGGATAAGCA
*
23214016 GGAGCCTTGAGCACCA
1 GGAGCCTCGAGCACCA
23214032 AAGCTAAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.18
Consensus pattern (42 bp):
GGAGCCTCGAGCACCATCGGCACATTGGTGCATGGATAAGCA
Found at i:23214570 original size:85 final size:84
Alignment explanation
Indices: 23214426--23215638 Score: 910
Period size: 85 Copynumber: 14.3 Consensus size: 84
23214416 TGGTCATGCA
* * ** * *
23214426 GGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCGCCATCGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC
*
23214489 ACCTCAGTGCTGGGATGTGCG
65 ACCT-AGTGCTTGGATGTGCG
* * *
23214510 AGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
23214575 CCTCGGTGCTAT-GATGTGCG
66 CCT-AGTGCT-TGGATGTGCG
* ** *
23214595 GGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
23214660 CCTTGGTGCTTGGATGTGCG
66 CC-TAGTGCTTGGATGTGCG
* * * * * * *
23214680 AGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCAGGCACTATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
* ** *
23214745 AACTAAGCCCTTGG-TCGTGCA
65 ACCT-AGTGCTTGGAT-GTGCG
* ** * * *
23214766 TGAGCCTCGGGCACCATCGGCAAAATAGG-CCTTGGTAGTGCGGGAGCCTCGGCCACCATCGGCC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
23214830 CCTAGGTGCTGGGGTGTGCG
66 CCTA-GTGCTTGGATGTGCG
* * * *
23214850 GGAGCCTCGGACACCATCGGCAAACTAGGTCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
*
23214915 CCTCGGTGCTAT-GATGTGCG
66 CCT-AGTGCT-TGGATGTGCG
* ** * *
23214935 GGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTCGAGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
23215000 CCTTGGTGCTTGGATATGCG
66 CC-TAGTGCTTGGATGTGCG
* * * * * *
23215020 AGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
**
23215085 AAATAG-GCCCTTGG-TCGTGCG
65 ACCTAGTG--CTTGGAT-GTGCG
* * ** * *
23215106 GGAGCCTCGGCCACCATCGGC-CCCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGACACCATCGGT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-
* * *
23215169 AAACTAG-GCCCTTGG-TCGTGAG
64 CACCTAGTG--CTTGGAT-GTGCG
* ** * * * **
23215191 GGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC
23215254 AACCTAG-GCCCTTGG-TCGTGCG
65 -ACCTAGTG--CTTGGAT-GTGCG
* ** * ** * * *
23215276 GGAGCCTCGAGCACCATCAAC-ACCTTGGTGCTTGGAT-TTGCGGGAACCTCGGGCACCATCTGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
23215339 AACCTAG-GCCCTTGG-TCGTGCG
65 -ACCTAGTG--CTTGGAT-GTGCG
* * * * * * *
23215361 AGAGGCTCAGGCACCATCGGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-C
**
23215426 AAATAG-GCCCTTGG-TCGTGCG
65 ACCTAGTG--CTTGGAT-GTGCG
* * * * * * *
23215447 GGGGCCTCGGCCACCATCAGC-ACCTCGGCCCTTGGTCGTGC-GTAGTCTCGAGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
23215510 CCTTGGTGGCTCGGATGTGCG
66 CC-TAGT-GCTTGGATGTGCG
* * ** * ** *
23215531 GGAGCCTCGGGCAGCATCGGC-ACCTCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGC
1 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* *
23215595 AACTTGGTGCTTGGATGTGCG
65 -ACCTAGTGCTTGGATGTGCG
23215616 GGAGCCTCGGGCACCCATCGGCA
1 GGAGCCTCGGGCA-CCATCGGCA
23215639 CCTTGGTGCC
Statistics
Matches: 920, Mismatches: 173, Indels: 69
0.79 0.15 0.06
Matches are distributed among these distances:
83 2 0.00
84 115 0.12
85 641 0.70
86 160 0.17
87 2 0.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (84 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
CCTAGTGCTTGGATGTGCG
Found at i:23214661 original size:170 final size:168
Alignment explanation
Indices: 23214404--23215641 Score: 1018
Period size: 170 Copynumber: 7.3 Consensus size: 168
23214394 CACCAACAGC
* * * * * * ** *
23214404 AAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGAT-GTGCG
1 AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTT-GGTCGTGCG
* * *
23214468 GGAGCCTCGGGCGCCATCGGCACCTCAGTGCTGGGATGTGCGAGAGCCTCGGGCACCATCGGCAA
65 GGAGCCTCGAGCACCATCGGCACCT-AGTGCTTGGATGTGCGAGAGCCTCGGGCACCATCGGCAA
*
23214533 CCTAGGCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGG
129 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * * ** * **
23214573 TACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGC
1 AAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGC
* * *
23214637 GGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCA
64 GGGAGCCTCGAGCACCATCGGCACC-TAGTGCTTGGATGTGCGAGAGCCTCGGGCACCATCGGCA
* * * *
23214702 ACCTAGGCCCTTGGTCGTGCGAGAGGCTCAGGCACTATCGG
128 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* ** * ** *
23214743 CAAACTAAGCCCTTGGTCGTGCATGAGCCTCGGGCACCATCGGCAAAATAGG-CCTTGGTAGTGC
1 -AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGC
* * * * *
23214807 GGGAGCCTCG-GCCACCATCGGCCCCTAGGTGCTGGGGTGTGCGGGAGCCTCGGACACCATCGGC
64 GGGAGCCTCGAG-CACCATCGGCACCTA-GTGCTTGGATGTGCGAGAGCCTCGGGCACCATCGGC
* * *
23214871 AAACTAGGTCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGG
127 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * * ** * ** *
23214913 CACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTTGTCGTGC
1 AAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGC
* * * *
23214977 GGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATATGCGAGAACCTCGCGCACCATCGGCA
64 GGGAGCCTCGAGCACCATCGGCACC-TAGTGCTTGGATGTGCGAGAGCCTCGGGCACCATCGGCA
* * *
23215042 ACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGG
128 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * * ** *
23215083 CAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGAT-GTGC
1 -AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGG-TCGTGC
* * * *
23215147 GGGAGCCTCG-GACACCATCGGTAAACTAG-GCCCTTGG-TCGTGAGGGAGCCTCGGGCACCATC
64 GGGAGCCTCGAG-CACCATCGG-CACCTAGTG--CTTGGAT-GTGCGAGAGCCTCGGGCACCATC
* ** * * * **
23215209 GGC-ACCTCGGTGCTATGAT-GGGCGGGAGCCTCGGACACTGTCGG
124 GGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGG
* ** * ** *
23215253 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCAACACCTTGGTGCTTGGAT-TTG
1 -AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCACCTAGGCCCTTGG-TCGTG
* * * * *
23215316 CGGGAACCTCGGGCACCATCTGCAACCTAG-GCCCTTGG-TCGTGCGAGAGGCTCAGGCACCATC
63 CGGGAGCCTCGAGCACCATCGGC-ACCTAGTG--CTTGGAT-GTGCGAGAGCCTCGGGCACCATC
* * *
23215379 GGTAAACTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
124 GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * * * *
23215424 TAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCAGCACCTCGGCCCTTGGTCGTGC-
1 -AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCG
* * * * * *
23215488 GTAGTCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGGCAGCATCGGC-
65 GGAGCCTCGAGCACCATCGGCACC-TAGT-GCTTGGATGTGCGAGAGCCTCGGGCACCATCGGCA
* ** * ** *
23215552 ACCTCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGG
128 ACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * ** *
23215594 CAACTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCACCT
1 AAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACA-CCATCGGCACCT
23215642 TGGTGCCTGG
Statistics
Matches: 846, Mismatches: 188, Indels: 69
0.77 0.17 0.06
Matches are distributed among these distances:
169 99 0.12
170 569 0.67
171 176 0.21
172 2 0.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (168 bp):
AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGG
GAGCCTCGAGCACCATCGGCACCTAGTGCTTGGATGTGCGAGAGCCTCGGGCACCATCGGCAACC
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
Found at i:23214994 original size:298 final size:296
Alignment explanation
Indices: 23214732--23215638 Score: 1171
Period size: 298 Copynumber: 3.0 Consensus size: 296
23214722 GAGAGGCTCA
* * * *
23214732 GGCACTATCGGCAAACTAAGCCCTTGGTCGTGC-ATGAGCCTCGGGCACCATCGGCAAAATAGGC
1 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGGCTCGGGCACCATCGGCAAAATAGGC
*
23214796 CTTGGTAGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGGTGTGCGGGAGCCTCGGA
65 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGGTGTGCGGGAGCCTCGGA
* *
23214861 CACCATCGGCAAACTAGGTCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTA
130 CACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTA
*
23214926 TGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTCGAGCA
195 TGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCA
23214991 CCATCGGCACCTTGGTGCTTGGATATGCGAGAACCTC
260 CCATCGGCACCTTGGTGCTTGGATATGCGAGAACCTC
*
23215028 GCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACTATCGGCAAAATAGGC
1 G-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGG-
*
23215093 CCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGATGTGCGGGAGCCTCGG
64 CCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGGTGTGCGGGAGCCTCGG
* *
23215158 ACACCATCGGTAAACTAGGCCCTTGGTCGTGAGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT
129 ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT
*
23215223 ATGATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGC
194 ATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGC
** * *
23215288 ACCATCAACACCTTGGTGCTTGGATTTGCGGGAACCTC
259 ACCATCGGCACCTTGGTGCTTGGATATGCGAGAACCTC
* * * * *
23215326 GGGCACCATCTGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCAGGCACCATCGGTAAACTAAGC
1 -GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAAT-AGG
* **** ** * *
23215391 CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAAAATAGGCCCT-TGGTCGTGCGGGGGCCTC
64 CCTTGGTCGTGCGGGAGCCTCGGCCACCATCGG-CCCCTAGGTGCTGGGGT-GTGCGGGAGCCTC
* * * * * * * *
23215455 GGCCACCATCAGC-ACCTCGGCCCTTGGTCGTGC-GTAGTCTCGAGCACCATCGGCACCTTGGTG
127 GGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-
** * * * ** * **
23215518 GCTCGGATGTGCGGGAGCCTCGGGCAGC-ATCGGC-ACCTCGGTGGCTAGGAGGTGCGGGAGCCT
191 GCTATGATGTGCGGGAGCCTCGGACA-CTGTCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCT
* * * *
23215581 CG-GACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTC
254 CGAG-CACCATCGGCACCTTGGTGCTTGGATATGCGAGAACCTC
23215624 GGGCACCCATCGGCA
1 -GGCA-CCATCGGCA
23215639 CCTTGGTGCC
Statistics
Matches: 539, Mismatches: 60, Indels: 21
0.87 0.10 0.03
Matches are distributed among these distances:
296 1 0.00
297 87 0.16
298 411 0.76
299 40 0.07
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.19
Consensus pattern (296 bp):
GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCC
TTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGGTGTGCGGGAGCCTCGGAC
ACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT
GATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCAC
CATCGGCACCTTGGTGCTTGGATATGCGAGAACCTC
Found at i:23215022 original size:340 final size:338
Alignment explanation
Indices: 23214402--23215625 Score: 1335
Period size: 340 Copynumber: 3.6 Consensus size: 338
23214392 GACACCAACA
* * * * * * *
23214402 GCAAACTAAGCCCTTGGTCATGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCG-ATGTG
1 GCAAAATAAGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCACCTAGGTCCTTGGTATGTG
* *
23214466 CGGGAGCCTCGGGCGCCATCGGCACCTCA-GTGCTGGGATGTGCGAGAGCCTCGGGCACCATCGG
66 CGGGAGCCTC-GGCACCATCGGCACCT-AGGTGCTGGGATGTGCGGGAGCCTCGGGCACCATCGG
* * * *
23214530 CAACCTAGGCCCTTGG-TCGTGCGGGAACCTCGGGCACCATCGGTACCTCGGTGCTATGATGTGC
129 C-ACCTAGGTCCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCACCTCGGTGCT-TGATGTGC
23214594 GGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC
191 GGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC
23214659 ACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
256 ACCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA
*
23214724 GAGGCTCAGGCACTATCG
321 GAGGCTCGGGCACTATCG
* * * **
23214742 GCAAACTAAGCCCTTGGTCGTGCATGAGCCTCGGGCACCATCGGCAAAATAGG-CCTTGGTA-GT
1 GCAAAATAAGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGC-ACCTAGGTCCTTGGTATGT
* * *
23214805 GCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGCTGGGGTGTGCGGGAGCCTCGGACACCATCGG
65 GCGGGAGCCTCGG-CACCATCGGCACCTAGGTGCTGGGATGTGCGGGAGCCTCGGGCACCATCGG
* * *
23214870 CAAACTAGGTCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTATGATGTGCG
129 C-ACCTAGGTCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCACCTCGGTGCT-TGATGTGCG
*
23214935 GGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTTGTCGTGCGGGAGCCTCGAGCACCATCGGCA
192 GGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCA
*
23215000 CCTTGGTGCTTGGATATGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
257 CCTTGGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
23215065 AGGCTCGGGCACTATCG
322 AGGCTCGGGCACTATCG
* * * * *
23215082 GCAAAATAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCCCCTAGGTGC-TGGGATGTG
1 GCAAAATAAGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCACCTAGGTCCTTGGTATGTG
* * ** * *
23215146 CGGGAGCCTCGGACACCATCGGTAAACTAGGCCCTTGG-TCGTGAGGGAGCCTCGGGCACCATCG
66 CGGGAGCCTCGG-CACCATCGG-CACCTAGGTGCTGGGAT-GTGCGGGAGCCTCGGGCACCATCG
* * * ** * ** *
23215210 GCACCTCGGTGCTAT-GATGGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTG
128 GCACCTAGGTCCT-TGGATGTGCGGGAGCCTCGGACACCATCGGC-ACCTCGGTGCTTGAT-GTG
** ** * ** * * *
23215274 CGGGAGCCTC-GAGCACCATCAAC-ACCTTGGTGCTTGGAT-TTGCGGGAACCTCGGGCACCATC
190 CGGGAGCCTCGGA-CACTGTCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATC
* * ** ** * * *
23215336 TGCAACCTAGGCCCTTGG-TCGTGCGAGAGGCTCAG-GCACCATCGGTAAACTAAGCCCTTGGTC
253 GGC-ACCTTGGTGCTTGGAT-GTGCGAGAACCTC-GCGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
23215399 GTGCGGGAGCCTCGGGCACCATCG
315 GTGCGAGAGGCTCGGGCACTATCG
* * * * * * * *
23215423 GTAAAATAGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCAGCACCTCGGCCCTTGGT-CGTG
1 GCAAAATAAGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCACCTAGGTCCTTGGTATGTG
* * * * *
23215487 C-GTAGTCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGGCAGCATCGG
66 CGGGAGCCTCG-GCACCATCGGCACCTAGGT-GCTGGGATGTGCGGGAGCCTCGGGCACCATCGG
* * * * * *
23215551 CACCTCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCG
129 CACCTAGGT-CCTTGGATGTGCGGGAGCCTCGGACACCATCGGCACCTCGGTGCTT-GATGTGCG
23215616 GGAGCCTCGG
192 GGAGCCTCGG
23215626 GCACCCATCG
Statistics
Matches: 755, Mismatches: 104, Indels: 49
0.83 0.11 0.05
Matches are distributed among these distances:
339 16 0.02
340 515 0.68
341 220 0.29
342 4 0.01
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (338 bp):
GCAAAATAAGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCACCTAGGTCCTTGGTATGTG
CGGGAGCCTCGGCACCATCGGCACCTAGGTGCTGGGATGTGCGGGAGCCTCGGGCACCATCGGCA
CCTAGGTCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCACCTCGGTGCTTGATGTGCGGGAG
CCTCGGACACTGTCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTT
GGTGCTTGGATGTGCGAGAACCTCGCGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGC
TCGGGCACTATCG
Found at i:23217056 original size:43 final size:42
Alignment explanation
Indices: 23216990--23217108 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 42
23216980 AGCTCGTACA
**
23216990 ATGCCAACATCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACATGTAATCAAATA-CG
* * * * *
23217033 ATGCCACTGTCTCAGACAGGGTCTTACACGAAATCAGATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATACG
* *
23217075 ATGCTAATGTCCCAGACATGGTCTTACATGTAAT
1 ATGCCAATGTCCCAGACAGGGTCTTACATGTAAT
23217109 TCTCAAATTG
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 30 0.48
43 31 0.50
44 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATGTAATCAAATACG
Found at i:23219035 original size:14 final size:14
Alignment explanation
Indices: 23219016--23219042 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23219006 TGAAAAGAAG
23219016 TAAAAAAATCGAGT
1 TAAAAAAATCGAGT
23219030 TAAAAAAATCGAG
1 TAAAAAAATCGAG
23219043 ATTGGTGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.15, T:0.19
Consensus pattern (14 bp):
TAAAAAAATCGAGT
Found at i:23219742 original size:17 final size:18
Alignment explanation
Indices: 23219720--23219755 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23219710 AAGAAATAAA
*
23219720 AGAAAGAG-TGGAAAAAG
1 AGAAAGAGCTAGAAAAAG
23219737 AGAAAGAGCTAGAAAAAG
1 AGAAAGAGCTAGAAAAAG
23219755 A
1 A
23219756 AATGAGTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.61, C:0.03, G:0.31, T:0.06
Consensus pattern (18 bp):
AGAAAGAGCTAGAAAAAG
Found at i:23229125 original size:18 final size:18
Alignment explanation
Indices: 23229092--23229137 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
23229082 AACCCAATCA
* *
23229092 TAAAAATTACAAATAATT
1 TAAAAAATAAAAATAATT
*
23229110 TAATAAATAAAAATAATT
1 TAAAAAATAAAAATAATT
23229128 TAAAAAATAA
1 TAAAAAATAA
23229138 TATATAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAAAAATAAAAATAATT
Found at i:23229286 original size:17 final size:17
Alignment explanation
Indices: 23229266--23229326 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
23229256 ATTTCAAGAT
23229266 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* **
23229283 TTATGTAGTGATTTAAAGA
1 TTATGTAATG-TTTTTA-A
*
23229302 CTTATGTAATATTTTTAA
1 -TTATGTAATGTTTTTAA
23229320 TTATGTA
1 TTATGTA
23229327 GTGATTTAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 16 0.47
18 5 0.15
19 5 0.15
20 8 0.24
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:23229307 original size:37 final size:37
Alignment explanation
Indices: 23229256--23229335 Score: 133
Period size: 37 Copynumber: 2.2 Consensus size: 37
23229246 TTATGTGTTA
* * *
23229256 ATTTCAAGATTTATGTAATGTTTTTAATTATGTAGTG
1 ATTTAAAGACTTATGTAATATTTTTAATTATGTAGTG
23229293 ATTTAAAGACTTATGTAATATTTTTAATTATGTAGTG
1 ATTTAAAGACTTATGTAATATTTTTAATTATGTAGTG
23229330 ATTTAA
1 ATTTAA
23229336 TTCGGTTAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.50
Consensus pattern (37 bp):
ATTTAAAGACTTATGTAATATTTTTAATTATGTAGTG
Found at i:23229308 original size:20 final size:18
Alignment explanation
Indices: 23229281--23229335 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 18
23229271 TAATGTTTTT
23229281 AATTATGTAGTGATTTAA
1 AATTATGTAGTGATTTAA
* **
23229299 AGACTTATGTAAT-ATTTTT
1 A-A-TTATGTAGTGATTTAA
23229318 AATTATGTAGTGATTTAA
1 AATTATGTAGTGATTTAA
23229336 TTCGGTTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
17 8 0.29
18 6 0.21
19 6 0.21
20 8 0.29
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (18 bp):
AATTATGTAGTGATTTAA
Found at i:23231492 original size:17 final size:16
Alignment explanation
Indices: 23231468--23231499 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23231458 TTTTATATTT
*
23231468 TTTTAAAAAATTATAA
1 TTTTAAAAAAATATAA
23231484 TTTTAAAAAAATATAA
1 TTTTAAAAAAATATAA
23231500 ATATTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TTTTAAAAAAATATAA
Found at i:23231530 original size:19 final size:18
Alignment explanation
Indices: 23231495--23231543 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
23231485 TTTAAAAAAA
*
23231495 TATAAATA-TTAGAATTT
1 TATAAATATTTTGAATTT
23231512 CTATAAATATTTTGAATTT
1 -TATAAATATTTTGAATTT
*
23231531 TAAAAATTATTTT
1 TATAAA-TATTTT
23231544 CAGATTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (18 bp):
TATAAATATTTTGAATTT
Found at i:23231747 original size:9 final size:9
Alignment explanation
Indices: 23231733--23231763 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
23231723 TCGAGTTGAC
23231733 TCGAATAAT
1 TCGAATAAT
23231742 TCGAATAAT
1 TCGAATAAT
*
23231751 TCGAATAAC
1 TCGAATAAT
23231760 TCGA
1 TCGA
23231764 TTCGATTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (9 bp):
TCGAATAAT
Found at i:23238518 original size:8 final size:8
Alignment explanation
Indices: 23238505--23238533 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
23238495 TATAATAAAT
23238505 TTTTTTTA
1 TTTTTTTA
23238513 TTTTTTTA
1 TTTTTTTA
23238521 TTTTTTTA
1 TTTTTTTA
23238529 TTTTT
1 TTTTT
23238534 AAAATACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTTA
Found at i:23238544 original size:11 final size:11
Alignment explanation
Indices: 23238530--23238555 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23238520 ATTTTTTTAT
23238530 TTTTAAAATAC
1 TTTTAAAATAC
23238541 TTTTAAAATAC
1 TTTTAAAATAC
23238552 TTTT
1 TTTT
23238556 TTTAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:23238557 original size:39 final size:39
Alignment explanation
Indices: 23238513--23238635 Score: 178
Period size: 39 Copynumber: 3.1 Consensus size: 39
23238503 ATTTTTTTTA
* *
23238513 TTTTTTTATTTTTTTATTTTTAAAATACTTTTAAAATAC
1 TTTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATAC
23238552 TTTTTTTAAATTTTTTTAAATTTT-AAAT-TTTTTAAAATAC
1 TTTTTTT--ATTTTTTT-AATTTTAAAATATTTTTAAAATAC
*
23238592 TTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATAC
1 TTTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATAC
23238631 TTTTT
1 TTTTT
23238636 AAAATTTTTG
Statistics
Matches: 76, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
37 6 0.08
38 12 0.16
39 24 0.32
40 17 0.22
41 12 0.16
42 5 0.07
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (39 bp):
TTTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:23238567 original size:10 final size:10
Alignment explanation
Indices: 23238552--23238612 Score: 60
Period size: 10 Copynumber: 6.4 Consensus size: 10
23238542 TTTAAAATAC
23238552 TTTTTTTAAA
1 TTTTTTTAAA
23238562 TTTTTTTAAA
1 TTTTTTTAAA
23238572 ---TTTTAAA
1 TTTTTTTAAA
*
23238579 TTTTTTAAAA
1 TTTTTTTAAA
23238589 TACTTTTTT-AA
1 T--TTTTTTAAA
23238600 TTTTTTT-AA
1 TTTTTTTAAA
23238609 TTTT
1 TTTT
23238613 AAAATATTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
7 7 0.16
9 12 0.27
10 17 0.39
11 3 0.07
12 5 0.11
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTTTAAA
Found at i:23238577 original size:17 final size:17
Alignment explanation
Indices: 23238555--23238626 Score: 65
Period size: 17 Copynumber: 4.0 Consensus size: 17
23238545 AAAATACTTT
23238555 TTTTAAATTTTTTTAAA
1 TTTTAAATTTTTTTAAA
*
23238572 TTTTAAATTTTTTAAAATA
1 TTTTAAATTTTTT-TAA-A
*
23238591 CTTTTTTAATTTTTTT-AA
1 --TTTTAAATTTTTTTAAA
*
23238609 TTTTAAAATATTTTTAAA
1 TTTT-AAATTTTTTTAAA
23238627 ATACTTTTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
16 4 0.09
17 21 0.48
18 5 0.11
19 2 0.05
21 12 0.27
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTAAATTTTTTTAAA
Found at i:23238605 original size:8 final size:9
Alignment explanation
Indices: 23238552--23238612 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
23238542 TTTAAAATAC
23238552 TTTTTTTAAA
1 TTTTTTT-AA
23238562 TTTTTTTAA
1 TTTTTTTAA
* *
23238571 -ATTTTAAA
1 TTTTTTTAA
*
23238579 TTTTTTAAAA
1 TTTTTT-TAA
23238589 TACTTTTTTAA
1 T--TTTTTTAA
23238600 TTTTTTTAA
1 TTTTTTTAA
23238609 TTTT
1 TTTT
23238613 AAAATATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
8 6 0.14
9 18 0.42
10 11 0.26
11 3 0.07
12 5 0.12
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:23238623 original size:11 final size:11
Alignment explanation
Indices: 23238609--23238644 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
23238599 ATTTTTTTAA
23238609 TTTTAAAATAT
1 TTTTAAAATAT
23238620 TTTTAAAATACT
1 TTTTAAAATA-T
23238632 TTTTAAAAT-T
1 TTTTAAAATAT
23238642 TTT
1 TTT
23238645 GTTTTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:23238644 original size:39 final size:39
Alignment explanation
Indices: 23238520--23238662 Score: 173
Period size: 38 Copynumber: 3.5 Consensus size: 39
23238510 TTATTTTTTT
* *
23238520 ATTTTTTTATTTTTAAAATACTTTTAAAATACTTTTTTTAA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATAC--TTTTTAA
*
23238561 ATTTTTTTAAATTTT-AAAT-TTTTTAAAATACTTTTTTA
1 ATTTTTTT-AATTTTAAAATATTTTTAAAATACTTTTTAA
23238599 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTT-AA
23238639 ATTTTTGTTTTAATTTTTAAAATA
1 A--TTT-TTTTAA-TTTTAAAATA
23238663 AATTTTTGGT
Statistics
Matches: 90, Mismatches: 4, Indels: 13
0.84 0.04 0.12
Matches are distributed among these distances:
37 6 0.07
38 18 0.20
39 17 0.19
40 13 0.14
41 12 0.13
42 8 0.09
43 6 0.07
44 10 0.11
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.61
Consensus pattern (39 bp):
ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAA
Found at i:23240407 original size:43 final size:42
Alignment explanation
Indices: 23240360--23240561 Score: 225
Period size: 43 Copynumber: 4.8 Consensus size: 42
23240350 TGTAATCTCG
*
23240360 TATCGATGCCAATAG-CCTAGCTATGGTCTTACACGAAATCACA
1 TATCGATGCCAAT-GTCCCAGC-ATGGTCTTACACGAAATCACA
*
23240403 TATCGATGCCACTGTCCCAGACATGGTCTTACACGAAATCAC-
1 TATCGATGCCAATGTCCCAG-CATGGTCTTACACGAAATCACA
* *
23240445 -ATCGATGCCAATGTCCCAGACATGGTCTTACACGAATTCTCA
1 TATCGATGCCAATGTCCCAG-CATGGTCTTACACGAAATCACA
* *
23240487 TATCGATGCCAATGTCCCAAACATGGTCTTACAC-AAATTCTCA
1 TATCGATGCCAATGTCCC-AGCATGGTCTTACACGAAA-TCACA
* * *
23240530 TATAGATGCC-ATATCCCAGATATGGTCTTACA
1 TATCGATGCCAATGTCCCAG-CATGGTCTTACA
23240562 TGTAACCTCG
Statistics
Matches: 141, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
41 39 0.28
42 20 0.14
43 80 0.57
44 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (42 bp):
TATCGATGCCAATGTCCCAGCATGGTCTTACACGAAATCACA
Found at i:23240470 original size:84 final size:84
Alignment explanation
Indices: 23240361--23240561 Score: 248
Period size: 84 Copynumber: 2.4 Consensus size: 84
23240351 GTAATCTCGT
* * *
23240361 ATCGATGCCAATAG-CCTAG-CTATGGTCTTACACGAAATCACATATCGATGCCACTGTCCCAGA
1 ATCGATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAAATCACATATCGATGCCAATGTCCCAAA
23240424 CATGGTCTTACACGAAA-TCAC
64 CATGGTCTTACAC-AAATTCAC
* *
23240445 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAATTCTCATATCGATGCCAATGTCCCAAACA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAATGTCCCAAACA
*
23240510 TGGTCTTACACAAATTCTCAT
66 TGGTCTTACACAAA-T-TCAC
* * *
23240531 ATAGATGCC-ATATCCCAGATATGGTCTTACA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACA
23240562 TGTAACCTCG
Statistics
Matches: 103, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
83 4 0.04
84 67 0.65
85 21 0.20
86 11 0.11
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (84 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAATGTCCCAAACA
TGGTCTTACACAAATTCAC
Found at i:23243956 original size:21 final size:22
Alignment explanation
Indices: 23243930--23243972 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
23243920 AAGTTGAATT
23243930 TAAAGTTATGAAT-TAT-ATATA
1 TAAAGTT-TGAATGTATGATATA
23243951 TAAAGTTTGAATGTATGATATA
1 TAAAGTTTGAATGTATGATATA
23243973 AGTTCTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (22 bp):
TAAAGTTTGAATGTATGATATA
Found at i:23243971 original size:20 final size:21
Alignment explanation
Indices: 23243930--23243973 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
23243920 AAGTTGAATT
*
23243930 TAAAGTTATGAATTATATATA
1 TAAAGTTATGAATTATAGATA
23243951 TAAAGTT-TGAATGTAT-GATA
1 TAAAGTTATGAAT-TATAGATA
23243971 TAA
1 TAA
23243974 GTTCTTTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (21 bp):
TAAAGTTATGAATTATAGATA
Found at i:23244077 original size:65 final size:64
Alignment explanation
Indices: 23244008--23244195 Score: 159
Period size: 64 Copynumber: 2.9 Consensus size: 64
23243998 ATGAATTATA
* * * * *
23244008 TATATATGCACATATGGTTCGAATATATATATT-TAAAG-TTCTTGAGCTGTATTTAATGTATGA
1 TATATATACACATATGGTTC-AA-ATATAGATTACAAAGTTTC-TGAGCGGAATTTAATGTATGA
23244071 AT
63 AT
* * *
23244073 TATATATACATATGTGGTTCAAATATAGGTTACAAAGTTTCTGAGCGGAATTTAATGTATGAAT
1 TATATATACACATATGGTTCAAATATAGATTACAAAGTTTCTGAGCGGAATTTAATGTATGAAT
* * * * * * *
23244137 TTTACATACATATGTGGTT-AGAATATAGGTTACAAA-TTCTTTGAGCTGAAATTTAATGT
1 TATATATACACATATGGTTCA-AATATAGATTACAAAGTT-TCTGAGC-GGAATTTAATGT
23244196 TGTAAATTAT
Statistics
Matches: 106, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
63 10 0.09
64 65 0.61
65 31 0.29
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (64 bp):
TATATATACACATATGGTTCAAATATAGATTACAAAGTTTCTGAGCGGAATTTAATGTATGAAT
Found at i:23244129 original size:64 final size:66
Alignment explanation
Indices: 23244046--23244222 Score: 214
Period size: 64 Copynumber: 2.8 Consensus size: 66
23244036 ATATTTAAAG
*
23244046 TTCT-TGAGCTG-TATTTAATGTATGAATTATATATACATATGTGGTTCA-AATATAGGTTACAA
1 TTCTCTGAGCTGAAATTTAATGTATGAATTATATATACATATGTGGTTCAGAATATAGGTTACAA
23244108 A
66 A
* * *
23244109 GTT-TCTGAGC-GGAATTTAATGTATGAATTTTACATACATATGTGGTT-AGAATATAGGTTACA
1 -TTCTCTGAGCTGAAATTTAATGTATGAATTATATATACATATGTGGTTCAGAATATAGGTTACA
23244171 AA
65 AA
*
23244173 TTCTTTGAGCTGAAATTTAATGT-TGTAA--AT-TATACATATGTGGTTC-GAAT
1 TTCTCTGAGCTGAAATTTAATGTATG-AATTATATATACATATGTGGTTCAGAAT
23244223 GTTTGTTTGC
Statistics
Matches: 99, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
62 18 0.18
63 6 0.06
64 62 0.63
65 13 0.13
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (66 bp):
TTCTCTGAGCTGAAATTTAATGTATGAATTATATATACATATGTGGTTCAGAATATAGGTTACAA
A
Found at i:23245225 original size:21 final size:20
Alignment explanation
Indices: 23245183--23245225 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 20
23245173 TTATGCTTGA
23245183 ATTTGACTACATTTGATCATG
1 ATTTGACTACATTTGA-CATG
23245204 ATTTGAGCTTACATTTGA-ATG
1 ATTTGA-C-TACATTTGACATG
23245225 A
1 A
23245226 GATATTCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 10 0.50
22 1 0.05
23 9 0.45
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (20 bp):
ATTTGACTACATTTGACATG
Found at i:23246895 original size:56 final size:57
Alignment explanation
Indices: 23246751--23246878 Score: 215
Period size: 56 Copynumber: 2.3 Consensus size: 57
23246741 GTAACAGTAC
*
23246751 AGTGTGGGCCTTAGCCCAATACAGAATCAGTG-TGAGCCTTAGCCCAATACAGAATT
1 AGTGTGGGCCTTAGCCCAATACAGAATCAGTGTTGAGCCTTAGCCCAATACAAAATT
* *
23246807 AGTGTTGGCCTTAGCCCAATACAGAATTAGTGTTG-GCCTTAGCCCAATACAAAATT
1 AGTGTGGGCCTTAGCCCAATACAGAATCAGTGTTGAGCCTTAGCCCAATACAAAATT
23246863 AGTGTGGGCCTTAGCC
1 AGTGTGGGCCTTAGCC
23246879 TCACACAGTA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
56 65 0.97
57 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (57 bp):
AGTGTGGGCCTTAGCCCAATACAGAATCAGTGTTGAGCCTTAGCCCAATACAAAATT
Found at i:23246897 original size:28 final size:28
Alignment explanation
Indices: 23246750--23246878 Score: 195
Period size: 28 Copynumber: 4.6 Consensus size: 28
23246740 AGTAACAGTA
23246750 CAGTGTGGGCCTTAGCCCAATACAGAAT
1 CAGTGTGGGCCTTAGCCCAATACAGAAT
*
23246778 CAGTGTGAGCCTTAGCCCAATACAGAAT
1 CAGTGTGGGCCTTAGCCCAATACAGAAT
* *
23246806 TAGTGTTGGCCTTAGCCCAATACAGAAT
1 CAGTGTGGGCCTTAGCCCAATACAGAAT
* * *
23246834 TAGTGTTGGCCTTAGCCCAATACAAAAT
1 CAGTGTGGGCCTTAGCCCAATACAGAAT
*
23246862 TAGTGTGGGCCTTAGCC
1 CAGTGTGGGCCTTAGCC
23246879 TCACACAGTA
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 95 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (28 bp):
CAGTGTGGGCCTTAGCCCAATACAGAAT
Found at i:23247363 original size:27 final size:27
Alignment explanation
Indices: 23247333--23247393 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
23247323 TATAATCGTT
* *
23247333 ATTTTACCC-TACGGGGGTATTTCGGTA
1 ATTTTACCCAT-CGAGGGTATTTCGATA
23247360 ATTTTACCCATCGAGGGTATTTCGATA
1 ATTTTACCCATCGAGGGTATTTCGATA
23247387 ATTTTAC
1 ATTTTAC
23247394 AACCTTTCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCGATA
Found at i:23252087 original size:40 final size:40
Alignment explanation
Indices: 23251997--23252165 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
23251987 CCTCGTTCAC
* * * * * *
23251997 ATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-C
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* *
23252036 ATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
*
23252076 ATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACGA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
* * * *
23252116 ATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACAA
1 ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
*
23252156 AGGCCTTCGG
1 ATGCCTTCGG
23252166 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGA
Found at i:23260066 original size:40 final size:40
Alignment explanation
Indices: 23259883--23260052 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
23259873 TCCTCGTTCA
* * * * *
23259883 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
23259922 AATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23259962 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
23260002 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
23260042 AAGGCCTTCGG
1 AATGCCTTCGG
23260053 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 33 0.28
40 85 0.72
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:23260089 original size:80 final size:79
Alignment explanation
Indices: 23259881--23260105 Score: 211
Period size: 80 Copynumber: 2.8 Consensus size: 79
23259871 GCTCCTCGTT
* * * * * * *
23259881 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CACAATGCCTTCGGGACGTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACT-AGCACAATGCCTTCGGGACTTAACCCGG
23259945 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * * *
23259960 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGG
** *
23260025 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
** * ** * *
23260040 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCCG
23260104 GA
64 GA
23260106 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 37 0.31
80 79 0.65
81 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:23263514 original size:79 final size:78
Alignment explanation
Indices: 23263377--23263592 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 78
23263367 TATTCGAATG
* * *
23263377 ATATCCGGGCTAAGTCCCGAAGGCTTTTATG-TAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAG-TCCGAAGGCA
* *
23263441 TTTGTACGAGTTG-CT
64 TTTATACGAG-TGACC
*
23263456 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCGAAGGCAT
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCAT
* *
23263521 TTATGCTAGTGACC
65 TTATACGAGTGACC
* * **
23263535 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-TCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCGAAG
23263593 TATTGGGTTT
Statistics
Matches: 121, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
76 7 0.06
77 6 0.05
78 18 0.15
79 70 0.58
80 20 0.17
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCATT
TATACGAGTGACC
Found at i:23263578 original size:39 final size:40
Alignment explanation
Indices: 23263377--23263585 Score: 239
Period size: 39 Copynumber: 5.3 Consensus size: 40
23263367 TATTCGAATG
* * *
23263377 ATATCCGGGCTAAGTCCCGAAGGCTTTTATG-TAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
23263416 ATATCCGGACTAAGATCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
*
23263456 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
23263496 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * **
23263535 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
23263574 ATATCC-GGCTAA
1 ATATCCGGGCTAA
23263586 TCCGAAGTAT
Statistics
Matches: 143, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
38 6 0.04
39 76 0.53
40 59 0.41
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:23267181 original size:10 final size:10
Alignment explanation
Indices: 23267166--23267206 Score: 55
Period size: 10 Copynumber: 3.9 Consensus size: 10
23267156 AAATGCTCGT
23267166 GAAAAAAAAA
1 GAAAAAAAAA
23267176 GAAAAAAAGAAA
1 G-AAAAAA-AAA
*
23267188 GAAAAGAAAA
1 GAAAAAAAAA
23267198 GAAAAAAAA
1 GAAAAAAAA
23267207 GAGCATATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 12 0.44
11 11 0.41
12 4 0.15
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:23278386 original size:39 final size:39
Alignment explanation
Indices: 23278343--23278441 Score: 128
Period size: 39 Copynumber: 2.5 Consensus size: 39
23278333 ATTCTCTTTT
** *
23278343 AAGCATATATCACATTACGT-ATATAATTACATAACATTC
1 AAGCATATATCACAACAC-TCATATAATCACATAACATTC
* *
23278382 AAGCACATATCACAACACTCATATAATCGCATAACATTC
1 AAGCATATATCACAACACTCATATAATCACATAACATTC
*
23278421 AAGCATATATCACAATACTCA
1 AAGCATATATCACAACACTCA
23278442 AAAATAGGTT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
38 1 0.02
39 51 0.98
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.27
Consensus pattern (39 bp):
AAGCATATATCACAACACTCATATAATCACATAACATTC
Found at i:23286190 original size:21 final size:21
Alignment explanation
Indices: 23286164--23286208 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
23286154 AGGCGAGAGA
23286164 AGGAGAAATAAGGCAGTGAGT
1 AGGAGAAATAAGGCAGTGAGT
*
23286185 AGGAGAAATAAGGCAGTGGGT
1 AGGAGAAATAAGGCAGTGAGT
23286206 AGG
1 AGG
23286209 TAAGGGTGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.42, T:0.13
Consensus pattern (21 bp):
AGGAGAAATAAGGCAGTGAGT
Found at i:23291745 original size:5 final size:5
Alignment explanation
Indices: 23291735--23291787 Score: 79
Period size: 5 Copynumber: 10.4 Consensus size: 5
23291725 TCAAACCCTC
* *
23291735 TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT GCTCT TCTCT TCTTCT CCTCT
1 TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TC-TCT TCTCT
23291786 TC
1 TC
23291788 ATTCTAGTGC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
5 39 0.91
6 4 0.09
ACGTcount: A:0.00, C:0.42, G:0.02, T:0.57
Consensus pattern (5 bp):
TCTCT
Found at i:23292513 original size:27 final size:27
Alignment explanation
Indices: 23292470--23292611 Score: 185
Period size: 27 Copynumber: 5.3 Consensus size: 27
23292460 ATTTGTGGGC
* * *
23292470 AAATGACCGACACACCCCCGGAGGCTA
1 AAATGACCGAAATACCCCCGGAGGGTA
* *
23292497 AGATGACCGAAATACCCCCGGAGGCTA
1 AAATGACCGAAATACCCCCGGAGGGTA
* *
23292524 AGATGACCGAAATACCCCCGGAGGGGA
1 AAATGACCGAAATACCCCCGGAGGGTA
* *
23292551 AAATGATCGAAATACCCCCAGAGGGTA
1 AAATGACCGAAATACCCCCGGAGGGTA
* *
23292578 AAATGACTGAAATACCCCCGAAGGGTA
1 AAATGACCGAAATACCCCCGGAGGGTA
23292605 AAATGAC
1 AAATGAC
23292612 TGTTATATCC
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.37, C:0.27, G:0.25, T:0.11
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCGGAGGGTA
Found at i:23292992 original size:28 final size:28
Alignment explanation
Indices: 23292952--23293060 Score: 157
Period size: 28 Copynumber: 3.9 Consensus size: 28
23292942 ACTGTATTGG
*
23292952 TTACTGTATTGGGCTAAGGCCCACATTG
1 TTACTGTATTGGGCTAAGGCCCACATTA
* * *
23292980 TTCCTGTACTGGGCTAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACATTA
*
23293008 TTACTGTATTGGGCTAAGGCCCACATTT
1 TTACTGTATTGGGCTAAGGCCCACATTA
23293036 TTACTGT-TTGGGGCTAAGGCCCACA
1 TTACTGTATT-GGGCTAAGGCCCACA
23293061 CTGTACTGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 2 0.03
28 70 0.97
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACATTA
Found at i:23293050 original size:56 final size:56
Alignment explanation
Indices: 23292952--23293062 Score: 179
Period size: 56 Copynumber: 2.0 Consensus size: 56
23292942 ACTGTATTGG
*
23292952 TTACTGTATTGGGCTAAGGCCCACATTGTTCCTGTACTGGGCTAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACATTGTTACTGTACTGGGCTAAGGCCCACACTA
* *
23293008 TTACTGTATTGGGCTAAGGCCCACATTTTTACTGT-TTGGGGCTAAGGCCCACACT
1 TTACTGTATTGGGCTAAGGCCCACATTGTTACTGTACT-GGGCTAAGGCCCACACT
23293063 GTACTGTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
55 1 0.02
56 50 0.98
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (56 bp):
TTACTGTATTGGGCTAAGGCCCACATTGTTACTGTACTGGGCTAAGGCCCACACTA
Found at i:23299312 original size:5 final size:5
Alignment explanation
Indices: 23299302--23299369 Score: 95
Period size: 5 Copynumber: 14.0 Consensus size: 5
23299292 ACCCTCTCTT
* *
23299302 TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTCTT TTCTC TTCTA TTCTC
1 TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC
*
23299352 TTCTA TTCT- TT-TC TTCTC
1 TTCTC TTCTC TTCTC TTCTC
23299370 CTCTTCATTC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
3 1 0.02
4 4 0.07
5 51 0.91
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.63
Consensus pattern (5 bp):
TTCTC
Found at i:23300096 original size:27 final size:27
Alignment explanation
Indices: 23300066--23300277 Score: 200
Period size: 27 Copynumber: 7.9 Consensus size: 27
23300056 GCAGATGATT
* *
23300066 GAAATACCCCCGAAAGGTAAGATGATC
1 GAAATACCCCCGAAAGGTAAAATGACC
* *
23300093 GAAATACCCCAG-AGGGTAAAATGACC
1 GAAATACCCCCGAAAGGTAAAATGACC
* * *
23300119 GAAATA-CCCCTAGAAGGTAAAATAATC
1 GAAATACCCCCGA-AAGGTAAAATGACC
*
23300146 GAAATA-CCCCTAAAGGGTAAAATGACC
1 GAAATACCCCCGAAA-GGTAAAATGACC
* * *
23300173 AAAATACCCCC-AGAGGATAAAATGACT
1 GAAATACCCCCGAAAGG-TAAAATGACC
* * *
23300200 AAAATACCCCCGAAGGGTAGAATGACC
1 GAAATACCCCCGAAAGGTAAAATGACC
*
23300227 GAAATACCCCC-AAATGGTAGAATGACC
1 GAAATACCCCCGAAA-GGTAAAATGACC
* *
23300254 GAAATACCCTCGAAGGGTAAAATG
1 GAAATACCCCCGAAAGGTAAAATG
23300278 GCTGTTATAC
Statistics
Matches: 154, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
25 3 0.02
26 23 0.15
27 119 0.77
28 9 0.06
ACGTcount: A:0.43, C:0.22, G:0.20, T:0.15
Consensus pattern (27 bp):
GAAATACCCCCGAAAGGTAAAATGACC
Found at i:23300181 original size:54 final size:54
Alignment explanation
Indices: 23300066--23300277 Score: 229
Period size: 54 Copynumber: 3.9 Consensus size: 54
23300056 GCAGATGATT
* *
23300066 GAAATACCCCC-GAAAGGTAAGATGATCGAAATACCCC-AGAGGGTAAAATGACC
1 GAAATACCCCCAG-AAGGTAAAATGATCGAAATACCCCTAAAGGGTAAAATGACC
* *
23300119 GAAATACCCCTAGAAGGTAAAATAATCGAAATACCCCTAAAGGGTAAAATGACC
1 GAAATACCCCCAGAAGGTAAAATGATCGAAATACCCCTAAAGGGTAAAATGACC
* * ** *
23300173 AAAATACCCCCAG-AGGATAAAATGA-CTAAAATACCCCCGAAGGGTAGAATGACC
1 GAAATACCCCCAGAAGG-TAAAATGATC-GAAATACCCCTAAAGGGTAAAATGACC
* * *
23300227 GAAATACCCCCA-AATGGTAGAATGACCGAAATA-CCCTCGAAGGGTAAAATG
1 GAAATACCCCCAGAA-GGTAAAATGATCGAAATACCCCT-AAAGGGTAAAATG
23300278 GCTGTTATAC
Statistics
Matches: 135, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
53 39 0.29
54 93 0.69
55 3 0.02
ACGTcount: A:0.43, C:0.22, G:0.20, T:0.15
Consensus pattern (54 bp):
GAAATACCCCCAGAAGGTAAAATGATCGAAATACCCCTAAAGGGTAAAATGACC
Found at i:23300206 original size:81 final size:80
Alignment explanation
Indices: 23300066--23300262 Score: 236
Period size: 81 Copynumber: 2.4 Consensus size: 80
23300056 GCAGATGATT
* * * *
23300066 GAAATACCCCCGAAAGGTAAGATGATCGAAATA-CCCCAGAGGGTAAAATGACCGAAATACCCCT
1 GAAATACCCCC-AAAGGTAAAATGACCGAAATACCCCCAGAGGATAAAATGACCAAAATACCCC-
*
23300130 AGAA-GGTAAAATAATC
64 AGAAGGGTAAAATAACC
* * * *
23300146 GAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCCAGAGGATAAAATGACTAAAATACCCCC
1 GAAATACCCCCAAA-GGTAAAATGACCGAAATACCCCCAGAGGATAAAATGACCAAAATACCCCA
* *
23300211 GAAGGGTAGAATGACC
65 GAAGGGTAAAATAACC
*
23300227 GAAATACCCCCAAATGGTAGAATGACCGAAATACCC
1 GAAATACCCCCAAA-GGTAAAATGACCGAAATACCC
23300263 TCGAAGGGTA
Statistics
Matches: 99, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 3 0.03
80 28 0.28
81 68 0.69
ACGTcount: A:0.44, C:0.23, G:0.19, T:0.14
Consensus pattern (80 bp):
GAAATACCCCCAAAGGTAAAATGACCGAAATACCCCCAGAGGATAAAATGACCAAAATACCCCAG
AAGGGTAAAATAACC
Found at i:23300288 original size:81 final size:78
Alignment explanation
Indices: 23300066--23300293 Score: 235
Period size: 81 Copynumber: 2.8 Consensus size: 78
23300056 GCAGATGATT
* *
23300066 GAAATACCCCCGAAAGGTAAGATGATCGAAATACCCCAGAGGGTAAAATGACCGAAATACCCCTA
1 GAAATACCCCC-AAAGGTAA-ATGACCGAAATACCCCAGAGGGTAAAATGACTGAAATACCCCTA
*
23300131 GAAGGTAAAATAATC
64 GAAGGTAAAATAACC
* * * *
23300146 GAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCCAGAGGATAAAATGACTAAAATACCCC-
1 GAAATACCCCCAAA-GGT-AAATGACCGAAATA-CCCCAGAGGGTAAAATGACTGAAATACCCCT
* * *
23300210 CGAAGGGTAGAATGACC
63 AGAA-GGTAAAATAACC
* **
23300227 GAAATACCCCCAAATGGTAGAATGACCGAAATACCCTC-GAAGGGTAAAATGGCTGTTATACCCC
1 GAAATACCCCCAAA-GGTA-AATGACCGAAATACCC-CAG-AGGGTAAAATGACTGAAATACCCC
23300291 TAG
62 TAG
23300294 GAGATGAAAT
Statistics
Matches: 121, Mismatches: 19, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
79 3 0.02
80 31 0.26
81 86 0.71
82 1 0.01
ACGTcount: A:0.42, C:0.23, G:0.20, T:0.16
Consensus pattern (78 bp):
GAAATACCCCCAAAGGTAAATGACCGAAATACCCCAGAGGGTAAAATGACTGAAATACCCCTAGA
AGGTAAAATAACC
Found at i:23300672 original size:28 final size:28
Alignment explanation
Indices: 23300636--23300742 Score: 135
Period size: 28 Copynumber: 3.8 Consensus size: 28
23300626 TACTGGTTAT
23300636 TGTATTGGGCTAAGGCCCACACTATTAC
1 TGTATTGGGCTAAGGCCCACACTATTAC
* * *
23300664 TGTACTGGGCTAAGGCCAACACTATAAC
1 TGTATTGGGCTAAGGCCCACACTATTAC
* * *
23300692 TGTATTGGGATAAGGCCCACATTGTTAC
1 TGTATTGGGCTAAGGCCCACACTATTAC
*
23300720 TGT-TTGGGGCTAAAGCCCACACT
1 TGTATT-GGGCTAAGGCCCACACT
23300743 GTATTGTTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 2 0.03
28 64 0.97
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (28 bp):
TGTATTGGGCTAAGGCCCACACTATTAC
Found at i:23300754 original size:56 final size:55
Alignment explanation
Indices: 23300633--23300754 Score: 138
Period size: 56 Copynumber: 2.2 Consensus size: 55
23300623 CTGTACTGGT
* *
23300633 TATTGTATTGGGCTAAGGCCCACACTATTACTGTACTGGGCTAAGGCCAACACTA
1 TATTGTATTGGGATAAGGCCCACACTATTACTGTACTGGGCTAAAGCCAACACTA
* * * * * *
23300688 TAACTGTATTGGGATAAGGCCCACATTGTTACTGT-TTGGGGCTAAAGCCCACACTG
1 T-ATTGTATTGGGATAAGGCCCACACTATTACTGTACT-GGGCTAAAGCCAACACTA
23300744 TATTGTTATTG
1 TATTG-TATTG
23300755 TATAGAGCTC
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
55 5 0.09
56 50 0.91
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (55 bp):
TATTGTATTGGGATAAGGCCCACACTATTACTGTACTGGGCTAAAGCCAACACTA
Found at i:23301560 original size:40 final size:40
Alignment explanation
Indices: 23301503--23301692 Score: 256
Period size: 40 Copynumber: 4.8 Consensus size: 40
23301493 TAATTATTAA
*
23301503 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGATACCCC
**
23301543 TGATTGCACATGTGTGCCCCTATTTGTACTTCGATACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGATACCCC
23301583 TGATTGCACATACGTGCCCCTATTTGTACTTCTG-TACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTC-GATACCCC
* * * *
23301623 TAATTACACATACGTGCCTCTGTTTGTACTTCGATACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGATACCCC
* * * * *
23301663 TAAATGCACTTACGTGCCCCTGTTTATACT
1 TGATTGCACATACGTGCCCCTATTTGTACT
23301693 CTAGTAACCC
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 132 0.99
41 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.15, T:0.35
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTATTTGTACTTCGATACCCC
Found at i:23301582 original size:20 final size:19
Alignment explanation
Indices: 23301519--23301624 Score: 74
Period size: 20 Copynumber: 5.3 Consensus size: 19
23301509 CACATACGTG
23301519 CCCCTATTTGTACTTCGGTA
1 CCCCTATTTGTACTTC-GTA
* *
23301539 CCCCTGA-TTGCACATGT-GTG
1 CCCCT-ATTTGTAC-T-TCGTA
23301559 CCCCTATTTGTACTTCGATA
1 CCCCTATTTGTACTTCG-TA
* * *
23301579 CCCCTGA-TTGCACATACGTG
1 CCCCT-ATTTGTAC-TTCGTA
23301599 CCCCTATTTGTACTTCTGTA
1 CCCCTATTTGTACTTC-GTA
23301619 CCCCTA
1 CCCCTA
23301625 ATTACACATA
Statistics
Matches: 66, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
18 1 0.02
19 6 0.09
20 52 0.79
21 6 0.09
22 1 0.02
ACGTcount: A:0.17, C:0.33, G:0.15, T:0.35
Consensus pattern (19 bp):
CCCCTATTTGTACTTCGTA
Found at i:23302489 original size:30 final size:31
Alignment explanation
Indices: 23302453--23302522 Score: 126
Period size: 30 Copynumber: 2.3 Consensus size: 31
23302443 CAACTCCAAA
23302453 AGTTACACAG-CCGTCTGACCTTACTCAGTG
1 AGTTACACAGACCGTCTGACCTTACTCAGTG
23302483 AGTTACAC-GACCGTCTGACCTTACTCAGTG
1 AGTTACACAGACCGTCTGACCTTACTCAGTG
23302513 AGTTACACAG
1 AGTTACACAG
23302523 GAGAGGACAC
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
29 1 0.03
30 36 0.95
31 1 0.03
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (31 bp):
AGTTACACAGACCGTCTGACCTTACTCAGTG
Found at i:23303949 original size:13 final size:13
Alignment explanation
Indices: 23303931--23303957 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
23303921 TTTCCAGAAA
23303931 TTATGAATTTATT
1 TTATGAATTTATT
23303944 TTATGAATTTATT
1 TTATGAATTTATT
23303957 T
1 T
23303958 AATGTTGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:23304139 original size:50 final size:50
Alignment explanation
Indices: 23304057--23304342 Score: 446
Period size: 50 Copynumber: 5.7 Consensus size: 50
23304047 ATTTGGGTAA
* *
23304057 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** *
23304107 AGATTTCCCATGTAAGACCATGTCTGGAACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
23304157 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
23304207 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * * *
23304257 AGAGGTCCCCTGTAAGACCATGCCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
**
23304307 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
23304343 TTTTGCATGT
Statistics
Matches: 216, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
50 187 0.87
51 29 0.13
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:23307301 original size:21 final size:20
Alignment explanation
Indices: 23307277--23307355 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 20
23307267 TCTTTCTCGC
*
23307277 TTTCCTTTTCGCCTTTTTCAT
1 TTTCCTTTTC-TCTTTTTCAT
*
23307298 TTTCATTTTCTTCTTTTTCACT
1 TTTCCTTTTC-TCTTTTTCA-T
** *
23307320 TTTATTTTTCTCTTTCTC-T
1 TTTCCTTTTCTCTTTTTCAT
23307339 TTTCCTTTT-TCTTTTTC
1 TTTCCTTTTCTCTTTTTC
23307356 CTCACTTGTT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
18 7 0.15
19 8 0.17
21 24 0.50
22 9 0.19
ACGTcount: A:0.05, C:0.24, G:0.01, T:0.70
Consensus pattern (20 bp):
TTTCCTTTTCTCTTTTTCAT
Found at i:23307335 original size:19 final size:20
Alignment explanation
Indices: 23307289--23307355 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
23307279 TCCTTTTCGC
23307289 CTTTTTCA-TTTTCATTTTCTT
1 CTTTTTCACTTTTCA-TTT-TT
23307310 CTTTTTCACTTTT-ATTTTT
1 CTTTTTCACTTTTCATTTTT
* * *
23307329 CTCTTTCTCTTTTCCTTTTT
1 CTTTTTCACTTTTCATTTTT
23307349 CTTTTTC
1 CTTTTTC
23307356 CTCACTTGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 13 0.32
20 14 0.35
21 9 0.22
22 4 0.10
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (20 bp):
CTTTTTCACTTTTCATTTTT
Found at i:23307354 original size:13 final size:13
Alignment explanation
Indices: 23307288--23307357 Score: 54
Period size: 13 Copynumber: 5.2 Consensus size: 13
23307278 TTCCTTTTCG
*
23307288 CCTTTTTCATTTT
1 CCTTTTTCTTTTT
*
23307301 CATTTTCTTCTTTTT
1 C-CTTT-TTCTTTTT
*
23307316 CAC-TTTTATTTTT
1 C-CTTTTTCTTTTT
*
23307329 -CTCTTTCTCTTTT
1 CCTTTTTCT-TTTT
23307342 CCTTTTTCTTTTT
1 CCTTTTTCTTTTT
23307355 CCT
1 CCT
23307358 CACTTGTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
11 1 0.02
12 4 0.09
13 19 0.42
14 12 0.27
15 9 0.20
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (13 bp):
CCTTTTTCTTTTT
Found at i:23308672 original size:101 final size:102
Alignment explanation
Indices: 23308550--23308733 Score: 309
Period size: 101 Copynumber: 1.8 Consensus size: 102
23308540 AAAGTGATGG
*
23308550 TCACGTGTGTAATACTATGTGTAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAATACTATGTGTAGGCTACTACGTGTACCGG-ATGATAATGGTCACATGTGTAGT
23308613 ACTATGTGCAGGCTACTATACGTACCGGATAGTTTCAA
65 ACTATGTGCAGGCTACTATACGTACCGGATAGTTTCAA
* * *
23308651 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAATACTATGTGTAGGCTACTACGTGTACCGGATGATAATGGTCACATGTGTAGTA
23308716 CTATGTGCAGGCTACTAT
66 CTATGTGCAGGCTACTAT
23308734 GTGAACCGAA
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.52
102 33 0.43
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAATACTATGTGTAGGCTACTACGTGTACCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATACGTACCGGATAGTTTCAA
Found at i:23308693 original size:51 final size:51
Alignment explanation
Indices: 23308549--23308741 Score: 194
Period size: 51 Copynumber: 3.8 Consensus size: 51
23308539 GAAAGTGATG
* * * *
23308549 GTCACGTGTGTAATACTATGTGTAGGCTACTACGTGTACCGGA-A-TGATA
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAATA
* *** *
23308598 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATACGTACCGGATAGT-TTCA
1 -GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAAT-A
* * * * * *
23308650 ATCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGATGGTAATG
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAATA
* *
23308701 GTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
23308742 AACATCATTG
Statistics
Matches: 114, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
50 36 0.32
51 75 0.66
52 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTAATA
Found at i:23308794 original size:45 final size:45
Alignment explanation
Indices: 23308738--23308832 Score: 156
Period size: 45 Copynumber: 2.1 Consensus size: 45
23308728 TACTATGTGA
*
23308738 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCT-AATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAA-TCC
*
23308783 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
23308828 ACCGA
1 ACCGA
23308833 GTATCTGTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
45 44 0.96
46 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:23308949 original size:38 final size:37
Alignment explanation
Indices: 23308907--23308979 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
23308897 AGGTGTGGAA
*
23308907 TTGAATTGAATAT-TGACTTAGAAA-TGGAAAAGTGAATT
1 TTGAATTGAAT-TGTGA-TT-GAAAGTGAAAAAGTGAATT
23308945 TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAA
23308980 ATTATGAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 14 0.44
38 14 0.44
ACGTcount: A:0.42, C:0.01, G:0.23, T:0.33
Consensus pattern (37 bp):
TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAATT
Found at i:23313826 original size:17 final size:17
Alignment explanation
Indices: 23313806--23313839 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23313796 TTTTTTATAG
23313806 TTAAAATAATTTTTGAA
1 TTAAAATAATTTTTGAA
23313823 TTAAAATAATTTTTGAA
1 TTAAAATAATTTTTGAA
23313840 AATGATGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (17 bp):
TTAAAATAATTTTTGAA
Found at i:23316197 original size:213 final size:213
Alignment explanation
Indices: 23315830--23316239 Score: 784
Period size: 213 Copynumber: 1.9 Consensus size: 213
23315820 TTCTTGATTC
* *
23315830 TTGAAATCGCTCAAAACAGCAAGATTGGACCAAGATTCGGTTTCTTAATTTTCTTGAAAACAAGA
1 TTGAAATCGCTCAAAACAGCAAGATTGGACCAAGATTCGGTTCCTTAATTTTATTGAAAACAAGA
23315895 AAGTGAATCTTGATTTTATTTTTCCTTTGTATACGCATCTAAGGCATTGCTAATGAAGTCTTGAA
66 AAGTGAATCTTGATTTTATTTTTCCTTTGTATACGCATCTAAGGCATTGCTAATGAAGTCTTGAA
23315960 TGATTCCATTTAGTTTCGTACGCATTTGCCTGGCATTTGACCTCGTTATTGGGCCTTGTGGTAAT
131 TGATTCCATTTAGTTTCGTACGCATTTGCCTGGCATTTGACCTCGTTATTGGGCCTTGTGGTAAT
23316025 TTCAAACAGTCTTGCTGT
196 TTCAAACAGTCTTGCTGT
23316043 TTGAAATCGCTCAAAACAGCAAGATTGGACCAAGATTCGGTTCCTTAATTTTATTGAAAACAAGA
1 TTGAAATCGCTCAAAACAGCAAGATTGGACCAAGATTCGGTTCCTTAATTTTATTGAAAACAAGA
*
23316108 AAGTGAATCTTGATTTTATTTTTCCTTTGTATACGCATCTAAGGCCTTGCTAATGAAGTCTTGAA
66 AAGTGAATCTTGATTTTATTTTTCCTTTGTATACGCATCTAAGGCATTGCTAATGAAGTCTTGAA
*
23316173 TGATTCCATTTAGTTTCGTACGCATTTGCCTGGCCTTTGACCTCGTTATTGGGCCTTGTGGTAAT
131 TGATTCCATTTAGTTTCGTACGCATTTGCCTGGCATTTGACCTCGTTATTGGGCCTTGTGGTAAT
23316238 TT
196 TT
23316240 GAGCCCATCA
Statistics
Matches: 193, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
213 193 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.38
Consensus pattern (213 bp):
TTGAAATCGCTCAAAACAGCAAGATTGGACCAAGATTCGGTTCCTTAATTTTATTGAAAACAAGA
AAGTGAATCTTGATTTTATTTTTCCTTTGTATACGCATCTAAGGCATTGCTAATGAAGTCTTGAA
TGATTCCATTTAGTTTCGTACGCATTTGCCTGGCATTTGACCTCGTTATTGGGCCTTGTGGTAAT
TTCAAACAGTCTTGCTGT
Found at i:23317838 original size:51 final size:51
Alignment explanation
Indices: 23317762--23317863 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
23317752 AAATAAATAA
23317762 ATTTCATATTGAAAAGGGATCAATTTGTGAAATATACAAAAGTTACTAAGT
1 ATTTCATATTGAAAAGGGATCAATTTGTGAAATATACAAAAGTTACTAAGT
23317813 ATTTCATATTGAAAAGGGATCAATTTGTGAAATATACAAAAGTTACTAAGT
1 ATTTCATATTGAAAAGGGATCAATTTGTGAAATATACAAAAGTTACTAAGT
23317864 GTATTAAGAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (51 bp):
ATTTCATATTGAAAAGGGATCAATTTGTGAAATATACAAAAGTTACTAAGT
Found at i:23317854 original size:26 final size:26
Alignment explanation
Indices: 23317773--23317854 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
23317763 TTTCATATTG
23317773 AAAAGGGATCAATTTGTGAAATATAC
1 AAAAGGGATCAATTTGTGAAATATAC
** * **
23317799 AAAAGTTA-CTAAGTATT-T--CATATTG
1 AAAAGGGATC-AA-T-TTGTGAAATATAC
23317824 AAAAGGGATCAATTTGTGAAATATAC
1 AAAAGGGATCAATTTGTGAAATATAC
23317850 AAAAG
1 AAAAG
23317855 TTACTAAGTG
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
23 2 0.05
24 2 0.05
25 13 0.33
26 18 0.46
27 2 0.05
28 2 0.05
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.29
Consensus pattern (26 bp):
AAAAGGGATCAATTTGTGAAATATAC
Found at i:23318500 original size:11 final size:11
Alignment explanation
Indices: 23318484--23318509 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23318474 TGTTTATTAA
23318484 TTTATTTTTAT
1 TTTATTTTTAT
23318495 TTTATTTTTAT
1 TTTATTTTTAT
23318506 TTTA
1 TTTA
23318510 ATGGGGCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:23319973 original size:33 final size:34
Alignment explanation
Indices: 23319918--23319981 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
23319908 TCTCTCATTT
23319918 TCTTTCTTTTTCCTCTCGTGTTTTTACCTCACAC
1 TCTTTCTTTTTCCTCTCGTGTTTTTACCTCACAC
* *
23319952 TCTTTGTTTTT-CTCTCTTGTTTTTACCTCA
1 TCTTTCTTTTTCCTCTCGTGTTTTTACCTCA
23319982 TTCTTTTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.08, C:0.28, G:0.06, T:0.58
Consensus pattern (34 bp):
TCTTTCTTTTTCCTCTCGTGTTTTTACCTCACAC
Found at i:23321743 original size:40 final size:40
Alignment explanation
Indices: 23321679--23321809 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 40
23321669 TGTTTGGATA
* * * *
23321679 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTCTG
1 AAAAACGCCGCTATAAATCGAGCATTAGCGACACTTTTTG
* * *
23321719 AAAAATGCCGCTATAAATCAAGCATTAGCGACTCTTTTTG
1 AAAAACGCCGCTATAAATCGAGCATTAGCGACACTTTTTG
* * * *
23321759 AAAAACGACGCTATACATCGAGCATTAACGTCACTTTTTG
1 AAAAACGCCGCTATAAATCGAGCATTAGCGACACTTTTTG
*
23321799 AAAAATGCCGC
1 AAAAACGCCGC
23321810 AAGAAAATTA
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (40 bp):
AAAAACGCCGCTATAAATCGAGCATTAGCGACACTTTTTG
Found at i:23322061 original size:40 final size:40
Alignment explanation
Indices: 23321998--23322104 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 40
23321988 AGCTTTAGTG
* * * * *
23321998 GCATTAGTGGCACTTTTTAAAAAACG-TCGTTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCT-GCTATAGATCGA
* *
23322038 GCATTAGCGGCGCTTCTTGAAAAATGCTGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCTGCTATAGATCGA
*
23322078 GCATTAGCGACGCTTTTTGAAAAACGC
1 GCATTAGCGGCGCTTTTTGAAAAACGC
23322105 CGCAAAAAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 55 0.98
41 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCTGCTATAGATCGA
Found at i:23322115 original size:154 final size:154
Alignment explanation
Indices: 23321834--23322113 Score: 375
Period size: 154 Copynumber: 1.8 Consensus size: 154
23321824 CAACGCCATA
** * *
23321834 AGCTTTAGTGGCATTAGTGGTGCTTTCTGAAAAACGCTGCTATAGATCTAGCATTAGCGGCACTT
1 AGCTTTAGTGGCATTAGTGGCACTTTCTAAAAAACGCTGCTATAGATCGAGCATTAGCGGCACTT
* * *
23321899 TTCAGAAATGCTACTATATGTCGACCATTAGTGGCGCTCATTGAAAAACGCCGCAAAAAAATTAA
66 TTCAAAAATGCTACTATATGTCGACCATTAGCGACGCTCATTGAAAAACGCCGCAAAAAAATTAA
23321964 GCACAATGTCGCCGTTTTATGTTG
131 GCACAATGTCGCCGTTTTATGTTG
* * * *
23321988 AGCTTTAGTGGCATTAGTGGCACTTTTTAAAAAACG-TCGTTATAGGTCGAGCATTAGCGGCGCT
1 AGCTTTAGTGGCATTAGTGGCACTTTCTAAAAAACGCT-GCTATAGATCGAGCATTAGCGGCACT
* * * **
23322052 TCTTGAAAAATGCTGCTATA-GATCGAGCATTAGCGACGCTTTTTGAAAAACGCCGCAAAAAA
65 T-TTCAAAAATGCTACTATATG-TCGACCATTAGCGACGCTCATTGAAAAACGCCGCAAAAAA
23322114 TTTAGTAAGA
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
153 1 0.01
154 56 0.52
155 50 0.47
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (154 bp):
AGCTTTAGTGGCATTAGTGGCACTTTCTAAAAAACGCTGCTATAGATCGAGCATTAGCGGCACTT
TTCAAAAATGCTACTATATGTCGACCATTAGCGACGCTCATTGAAAAACGCCGCAAAAAAATTAA
GCACAATGTCGCCGTTTTATGTTG
Found at i:23322585 original size:15 final size:15
Alignment explanation
Indices: 23322565--23322596 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23322555 AAAGGCTTGT
*
23322565 GGATTATGGGTTTAG
1 GGATTATGGGTTAAG
23322580 GGATTATGGGTTAAG
1 GGATTATGGGTTAAG
23322595 GG
1 GG
23322597 TTGAGGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.34
Consensus pattern (15 bp):
GGATTATGGGTTAAG
Found at i:23326662 original size:23 final size:23
Alignment explanation
Indices: 23326636--23326699 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 23
23326626 ATAATACTAT
*
23326636 TTTATATACATATGTATATAT-AA
1 TTTATATACAAATGTATAT-TCAA
* *
23326659 TTTATAT-CAAAT-TATGTTCAT
1 TTTATATACAAATGTATATTCAA
23326680 TTTATATACAAATGTATATT
1 TTTATATACAAATGTATATT
23326700 ATTGATCTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 1 0.03
21 12 0.35
22 9 0.26
23 12 0.35
ACGTcount: A:0.39, C:0.06, G:0.05, T:0.50
Consensus pattern (23 bp):
TTTATATACAAATGTATATTCAA
Found at i:23332034 original size:7 final size:7
Alignment explanation
Indices: 23332022--23332065 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
23332012 CAAAAAAATG
23332022 ATGAAAA
1 ATGAAAA
23332029 ATGAAAA
1 ATGAAAA
*
23332036 GTG-AAA
1 ATGAAAA
23332042 ATGAAAA
1 ATGAAAA
23332049 ATGAAAA
1 ATGAAAA
23332056 A-GTAAAA
1 ATG-AAAA
23332063 ATG
1 ATG
23332066 GAGAGGCTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
6 6 0.19
7 25 0.78
8 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.18, T:0.16
Consensus pattern (7 bp):
ATGAAAA
Found at i:23332042 original size:13 final size:13
Alignment explanation
Indices: 23332026--23332065 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
23332016 AAAATGATGA
*
23332026 AAAATGAAAAGTG
1 AAAATGAAAAATG
23332039 AAAATGAAAAATG
1 AAAATGAAAAATG
*
23332052 AAAAAGTAAAAATG
1 AAAATG-AAAAATG
23332066 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:23332062 original size:20 final size:20
Alignment explanation
Indices: 23332022--23332065 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
23332012 CAAAAAAATG
23332022 ATGAAAAATGAAAAGTGAAA
1 ATGAAAAATGAAAAGTGAAA
*
23332042 ATGAAAAATGAAAAAGTAAAA
1 ATGAAAAATG-AAAAGTGAAA
23332063 ATG
1 ATG
23332066 GAGAGGCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.66, C:0.00, G:0.18, T:0.16
Consensus pattern (20 bp):
ATGAAAAATGAAAAGTGAAA
Found at i:23333436 original size:87 final size:87
Alignment explanation
Indices: 23333285--23333529 Score: 418
Period size: 87 Copynumber: 2.8 Consensus size: 87
23333275 AGATCAATGA
* *
23333285 AGATCGAAAACAAAGCTTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
23333350 CTTCCTGCGTTAGCAACGAAGC
66 CTTCCTGCGTTAACAACGAAGC
*
23333372 AGATTGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
23333437 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAACGAAGC
* * *
23333459 AGATCGAAAACAAAGCCATGCCTCCATCGGTTGCAGTGGAGCTGATTAAAGATAGCAGATATTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
23333524 CTTCCT
66 CTTCCT
23333530 AAGCACTAGT
Statistics
Matches: 149, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 149 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAACGAAGC
Found at i:23335868 original size:6 final size:6
Alignment explanation
Indices: 23335857--23335883 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
23335847 ATTTTGAAAT
23335857 TTTTTA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT
23335884 GTTTCTACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:23340415 original size:49 final size:49
Alignment explanation
Indices: 23340294--23340478 Score: 198
Period size: 49 Copynumber: 3.8 Consensus size: 49
23340284 GGGAATGAGA
* * **
23340294 TCCCATGTAAGACCATGTTTGGGACATGG-AGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCACCGACATGA-AAC
** *
23340344 TCCCCCGTAAGACCATGTCTGGGACATGGCA-TGGACACCGATATGAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG-CACCGACATGAAAC
* * *
23340393 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACAAGAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-ACATGAAAC
*
23340441 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
23340479 TGTTATTATC
Statistics
Matches: 115, Mismatches: 15, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
48 7 0.06
49 67 0.58
50 39 0.34
51 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAAAC
Found at i:23341902 original size:43 final size:43
Alignment explanation
Indices: 23341793--23341981 Score: 184
Period size: 43 Copynumber: 4.4 Consensus size: 43
23341783 GGGTGTTACT
* * *
23341793 GTTTGTGATAAAAGCGCCACTAAAGGTCATGTTCGTTAGCAGC
1 GTTTGTGATAAAAGCGCCACTAAAGGTCATGCTCCTTAGCGGC
* * *** * *
23341836 GATTGTGATAAAAGTGATGCTAAAGGTCATGGTCCTTAGCGGT
1 GTTTGTGATAAAAGCGCCACTAAAGGTCATGCTCCTTAGCGGC
* * *
23341879 GTTTATGATAAAAGCGCCACTAAAGGCCA-GCTCTTTAGCGGC
1 GTTTGTGATAAAAGCGCCACTAAAGGTCATGCTCCTTAGCGGC
* * *
23341921 GTGTT-TGATAAAAGCGCCACTAAAGGTCATGCACTTTAGCAGC
1 GT-TTGTGATAAAAGCGCCACTAAAGGTCATGCTCCTTAGCGGC
* * *
23341964 CTTTTTCATAAAAGCGCC
1 GTTTGTGATAAAAGCGCC
23341982 GTTAAAAAAG
Statistics
Matches: 119, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
42 37 0.31
43 82 0.69
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
GTTTGTGATAAAAGCGCCACTAAAGGTCATGCTCCTTAGCGGC
Found at i:23341951 original size:85 final size:86
Alignment explanation
Indices: 23341792--23341951 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 86
23341782 GGGGTGTTAC
* * * * **
23341792 TGTTTGTGATAAAAGCGCCACTAAAGGTCATGTTCGTTAGCAGCGATTGTGATAAAAGTGATGCT
1 TGTTTATGATAAAAGCGCCACTAAAGGCCATGCTCGTTAGCAGCGATTGTGATAAAAGCGACACT
23341857 AAAGGTCATGGTCCTTAGCGG
66 AAAGGTCATGGTCCTTAGCGG
* * * *
23341878 TGTTTATGATAAAAGCGCCACTAAAGGCCA-GCTCTTTAGCGGCG-TGTTTGATAAAAGCGCCAC
1 TGTTTATGATAAAAGCGCCACTAAAGGCCATGCTCGTTAGCAGCGAT-TGTGATAAAAGCGACAC
23341941 TAAAGGTCATG
65 TAAAGGTCATG
23341952 CACTTTAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
84 1 0.02
85 34 0.54
86 28 0.44
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (86 bp):
TGTTTATGATAAAAGCGCCACTAAAGGCCATGCTCGTTAGCAGCGATTGTGATAAAAGCGACACT
AAAGGTCATGGTCCTTAGCGG
Found at i:23342035 original size:57 final size:57
Alignment explanation
Indices: 23341930--23342044 Score: 124
Period size: 57 Copynumber: 2.0 Consensus size: 57
23341920 CGTGTTTGAT
* * * * *
23341930 AAAAGCGCCACTAAAGGTCATGCACTTTAGCAGCCTTTTTCATAAAAGCGCCGTTAA
1 AAAAGCGCCACTAAAAGTCATGCACTTTAACAGCCTTTTGCATAAAAGCACCGCTAA
** * **
23341987 AAAAGCGCCACTAAAAGTCATGTTCTTTAACAGCGTTTGTGGGT-AAAGCACCGCTAA
1 AAAAGCGCCACTAAAAGTCATGCACTTTAACAGCCTTT-TGCATAAAAGCACCGCTAA
23342044 A
1 A
23342045 GGTCATGTTC
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 45 0.96
58 2 0.04
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (57 bp):
AAAAGCGCCACTAAAAGTCATGCACTTTAACAGCCTTTTGCATAAAAGCACCGCTAA
Found at i:23343954 original size:40 final size:39
Alignment explanation
Indices: 23343907--23343984 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 39
23343897 ATAGACAAAC
*
23343907 ATTAATGAT-GTCAAAATTAAGACACTTAATTAAA-ACACAT
1 ATTAATGATAGTC-AAACTAAGACA--TAATTAAAGACACAT
*
23343947 ATTAATGATATTCAAACTAAGACATAATTAAAGACACA
1 ATTAATGATAGTCAAACTAAGACATAATTAAAGACACA
23343985 AACTAAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
38 8 0.24
39 5 0.15
40 19 0.56
41 2 0.06
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.28
Consensus pattern (39 bp):
ATTAATGATAGTCAAACTAAGACATAATTAAAGACACAT
Found at i:23348473 original size:51 final size:50
Alignment explanation
Indices: 23348415--23348599 Score: 196
Period size: 51 Copynumber: 3.7 Consensus size: 50
23348405 CCGGTTCACA
* * * *
23348415 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCTGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCTGGTACACG
* * * *
23348466 TAGTAGCCTGCACATAGTACTACACACGTGATCGA-AGCTAT-TCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCT-GGTACACG
* * *
23348517 TAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCTGGTACACG
*
23348567 TAGTAGCCTGCACATAGTACTATACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
23348600 TAGCAACTTC
Statistics
Matches: 109, Mismatches: 19, Indels: 13
0.77 0.13 0.09
Matches are distributed among these distances:
49 1 0.01
50 41 0.38
51 65 0.60
52 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCTGGTACACG
Found at i:23348595 original size:101 final size:101
Alignment explanation
Indices: 23348413--23348597 Score: 291
Period size: 101 Copynumber: 1.8 Consensus size: 101
23348403 ACCCGGTTCA
* * * *
23348413 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCTGATACATGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCA-TATCATCTGATACACGTAGTAGCCTGCA
23348478 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
65 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
*
23348515 CATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCTGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATATCA-TCTGATACACGTAGTAGCCTGCA
*
23348579 CATAGTACTATACACGTGA
65 CATAGTACTACACACGTGA
23348598 CCTAGCAACT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 33 0.43
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATATCATCTGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTATTCGGTACG
Found at i:23350468 original size:13 final size:13
Alignment explanation
Indices: 23350450--23350489 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
23350440 AATTGTTAAG
23350450 TGACTCGTTAATA
1 TGACTCGTTAATA
*
23350463 TGACTCGTTAATG
1 TGACTCGTTAATA
*
23350476 TGACTCGTAAATA
1 TGACTCGTTAATA
23350489 T
1 T
23350490 CTATTATATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (13 bp):
TGACTCGTTAATA
Found at i:23351632 original size:26 final size:27
Alignment explanation
Indices: 23351602--23351655 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
23351592 AAAAGTGTAA
*
23351602 AATTGTAGTTAAATTGTG-AATATTAT
1 AATTGAAGTTAAATTGTGAAATATTAT
23351628 AATTGAAGTTAAATTGTGAAATATTAT
1 AATTGAAGTTAAATTGTGAAATATTAT
23351655 A
1 A
23351656 TGGATAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.43, C:0.00, G:0.15, T:0.43
Consensus pattern (27 bp):
AATTGAAGTTAAATTGTGAAATATTAT
Found at i:23352639 original size:8 final size:8
Alignment explanation
Indices: 23352628--23352666 Score: 78
Period size: 8 Copynumber: 4.9 Consensus size: 8
23352618 GTGACGTTGT
23352628 GACGTGGC
1 GACGTGGC
23352636 GACGTGGC
1 GACGTGGC
23352644 GACGTGGC
1 GACGTGGC
23352652 GACGTGGC
1 GACGTGGC
23352660 GACGTGG
1 GACGTGG
23352667 AACCCCAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.13, C:0.23, G:0.51, T:0.13
Consensus pattern (8 bp):
GACGTGGC
Found at i:23353469 original size:16 final size:16
Alignment explanation
Indices: 23353448--23353531 Score: 75
Period size: 16 Copynumber: 5.2 Consensus size: 16
23353438 AAAAATTATG
23353448 TTTTCTATCCTTCTAA
1 TTTTCTATCCTTCTAA
23353464 TTTTCTATCCCTTC-AA
1 TTTTCTAT-CCTTCTAA
* *
23353480 TTTTCCATCCTTCTAG
1 TTTTCTATCCTTCTAA
*
23353496 TTTGCTATCCCTT-T-A
1 TTTTCTAT-CCTTCTAA
* *
23353511 TTTTTTCATCTTTCTAA
1 TTTTCT-ATCCTTCTAA
23353528 TTTT
1 TTTT
23353532 ATTTCCACCC
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
15 12 0.22
16 28 0.52
17 14 0.26
ACGTcount: A:0.15, C:0.25, G:0.02, T:0.57
Consensus pattern (16 bp):
TTTTCTATCCTTCTAA
Found at i:23353490 original size:32 final size:32
Alignment explanation
Indices: 23353448--23353531 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 32
23353438 AAAAATTATG
*
23353448 TTTTCTATCCTTCTAATTTTCTATCCCTTCAA
1 TTTTCCATCCTTCTAATTTTCTATCCCTTCAA
* * * *
23353480 TTTTCCATCCTTCTAGTTTGCTATCCCTTTAT
1 TTTTCCATCCTTCTAATTTTCTATCCCTTCAA
* *
23353512 TTTTTCATCTTTCTAATTTT
1 TTTTCCATCCTTCTAATTTT
23353532 ATTTCCACCC
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.15, C:0.25, G:0.02, T:0.57
Consensus pattern (32 bp):
TTTTCCATCCTTCTAATTTTCTATCCCTTCAA
Found at i:23355593 original size:153 final size:151
Alignment explanation
Indices: 23355022--23355682 Score: 902
Period size: 150 Copynumber: 4.3 Consensus size: 151
23355012 AACATGTTCG
* *
23355022 TATTTCAGCCCTTTGTTCCTATTTTTTTTCCCAGATTTTATTACTTTTAAAAAATATACTATTTT
1 TATTTCGGCCCTTTGTTCGTA-TTTTTTTCCCAGATTTTATTAC-TTTAAAAAATATACTATTTT
*
23355087 CTAATTTTATTATTTTACATTATTTTAGTAGATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
64 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTG-TTT
**
23355152 TTTATTTAAATTTGAAAAAAA-CCT
128 TTTAAATAAATTT-AAAAAAATCCT
* *
23355176 TATTTCGGCCCTTTGTTCGTATTTTTTTGCCGGATTTTATTACTTTAAAAAATATACTATTTTCT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTAAAAAATATACTATTTTCT
* * *
23355241 AATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTACTGTGTTTTTT
66 AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTT
23355306 AAATAAA-TTAAAAAAATCCT
131 AAATAAATTTAAAAAAATCCT
* ** * *
23355326 TATTTTGGCTTTTTATTCGTA-TTTTTTCCCCGAATTTTATTACTTTAAAAAATATACTATTTTC
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAG-ATTTTATTACTTTAAAAAATATACTATTTTC
* *
23355390 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAATATG-TTTT
65 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTT
*
23355454 TAAATAAATTTAAAAAAATCTT
130 TAAATAAATTTAAAAAAATCCT
* *
23355476 TATTTCGGCCATTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTCAATAAAAATATATTATTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTT--A-AAAAATATACTATTT
* * * *
23355541 TCTAATTTTCTAATTTTACATTATTTTAGTACATTAT-TCTTGAAATGCATTCATTTAGTGTGTG
63 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGT-TTGAAATGTATTCATTTAGTGTGTT
23355605 TTTTAAATAAAATTTTAAAAAAA-CCTT
127 TTTTAAAT-AAA-TTTAAAAAAATCC-T
*
23355632 TATTTCGGCTCGGCCCTTTGTTCGTATTTTTTTCCCGGATTTTATTACTTT
1 TA-TT----TCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTT
23355683 CAATAAAAAA
Statistics
Matches: 454, Mismatches: 36, Indels: 27
0.88 0.07 0.05
Matches are distributed among these distances:
149 28 0.06
150 151 0.33
151 21 0.05
152 79 0.17
153 89 0.20
154 27 0.06
155 4 0.01
156 13 0.03
157 2 0.00
161 40 0.09
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (151 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTAAAAAATATACTATTTTCT
AATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTTTT
AAATAAATTTAAAAAAATCCT
Found at i:23356319 original size:125 final size:124
Alignment explanation
Indices: 23356080--23356372 Score: 453
Period size: 125 Copynumber: 2.3 Consensus size: 124
23356070 AACAAATAAG
* ** * *
23356080 TCGCGCCCACGTTTACGCGCTTTTGCTATAGTAGATCCTGAAAAAATAATTTCGAGTTGACGTTT
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGACCCTGAAAAAATAATTTCGAGTTGACGTTT
* * *
23356145 CTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTGTTTGATAAGAATTTGTGAAA
66 CTGAGCAAATAGTATAAAATCGATTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
* *
23356204 TCGCTG-CCTCGTGGACGCGCTTTTGCTACAGTAGGCCCTGGAAGAAATAATTTCGAGTTGACGT
1 TCGC-GCCCTCGTGGACGCGCTTTTGCTACAGTAGACCCT-GAAAAAATAATTTCGAGTTGACGT
23356268 TTCTGAGCAAATAGTATAAAATCGATTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
64 TTCTGAGCAAATAGTATAAAATCGATTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
*
23356329 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGATCCTAGAAA
1 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGACCCT-GAAA
23356373 TTGAGAGGAT
Statistics
Matches: 152, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
124 32 0.21
125 120 0.79
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (124 bp):
TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGACCCTGAAAAAATAATTTCGAGTTGACGTTT
CTGAGCAAATAGTATAAAATCGATTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAA
Found at i:23361504 original size:43 final size:43
Alignment explanation
Indices: 23361306--23361518 Score: 198
Period size: 43 Copynumber: 5.0 Consensus size: 43
23361296 TGTCACTGCC
* * *
23361306 AAAGCTCATGTTCTTTAGCGGCGCTTATCCCACAAACGCCACT
1 AAAGGTCATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGCT
* * * * *
23361349 AAAGGTCATGCTCTTTAACGGCG-TTTATTCCACAAACACCGAT
1 AAAGGTCATGTTCTTTAGCGGCGCTTT-TCCCACAAACGCCGCT
* *
23361392 AAAGGTCATGTTCTTTAGCGGCGCTTATCCCACAATCGCCGCT
1 AAAGGTCATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGCT
* * * * * * * **
23361435 ATAGATCTTG-ACTTTTAGTGGCGCTTTTCACGCAAGTGCCGCT
1 AAAGGTCATGTTC-TTTAGCGGCGCTTTTCCCACAAACGCCGCT
*
23361478 AAAGGTCATGTTCTTTAGCGGCGCTTTTTCCA-AAGACGCCG
1 AAAGGTCATGTTCTTTAGCGGCGCTTTTCCCACAA-ACGCCG
23361519 TAATAGATGG
Statistics
Matches: 130, Mismatches: 35, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
42 5 0.04
43 122 0.94
44 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (43 bp):
AAAGGTCATGTTCTTTAGCGGCGCTTTTCCCACAAACGCCGCT
Found at i:23361536 original size:86 final size:86
Alignment explanation
Indices: 23361306--23361548 Score: 242
Period size: 86 Copynumber: 2.8 Consensus size: 86
23361296 TGTCACTGCC
* * * * ** *
23361306 AAAGCTCATGTTCTTTAGCGGCGCTTATCCCACAAACGCCACTAAAGGTCATG-CTCTTTAACGG
1 AAAGGTCATGTTCTTTAGCGGCGCTTATCCCACAAACGCCGCTATAGATCGCGACT-TTTAGCGG
* * *** *
23361370 CGTTTATTC-CACAAACACCGAT
65 CGCTT-TTCACGCAAGTGCCGCT
* ** *
23361392 AAAGGTCATGTTCTTTAGCGGCGCTTATCCCACAATCGCCGCTATAGATCTTGACTTTTAGTGGC
1 AAAGGTCATGTTCTTTAGCGGCGCTTATCCCACAAACGCCGCTATAGATCGCGACTTTTAGCGGC
23361457 GCTTTTCACGCAAGTGCCGCT
66 GCTTTTCACGCAAGTGCCGCT
* * *
23361478 AAAGGTCATGTTCTTTAGCGGCGCTTTTTCCA-AAGACGCCG-TAATAGATGGCGACTTTTAGCG
1 AAAGGTCATGTTCTTTAGCGGCGCTTATCCCACAA-ACGCCGCT-ATAGATCGCGACTTTTAGCG
23361541 GCGCTTTT
64 GCGCTTTT
23361549 TCGAAAAACA
Statistics
Matches: 132, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
85 6 0.05
86 124 0.94
87 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (86 bp):
AAAGGTCATGTTCTTTAGCGGCGCTTATCCCACAAACGCCGCTATAGATCGCGACTTTTAGCGGC
GCTTTTCACGCAAGTGCCGCT
Found at i:23367428 original size:9 final size:9
Alignment explanation
Indices: 23367416--23367886 Score: 203
Period size: 9 Copynumber: 55.3 Consensus size: 9
23367406 TCTGTATTAA
*
23367416 GTAAATTAT
1 GTAAGTTAT
23367425 GTAAGTTAT
1 GTAAGTTAT
23367434 GT-A-TTAT
1 GTAAGTTAT
*
23367441 ATAAGTTAT
1 GTAAGTTAT
*
23367450 GTAAGTTAC
1 GTAAGTTAT
23367459 GT-A-TTAT
1 GTAAGTTAT
23367466 GTAAGTTAT
1 GTAAGTTAT
23367475 GTAAGTTAT
1 GTAAGTTAT
*
23367484 -TTA-TTAT
1 GTAAGTTAT
*
23367491 GTAAGCTAT
1 GTAAGTTAT
23367500 GTAAGTTAT
1 GTAAGTTAT
23367509 GT-A-TTAT
1 GTAAGTTAT
*
23367516 GTAAGCTAT
1 GTAAGTTAT
23367525 GTCATAGACTT-T
1 GT-A-AG--TTAT
23367537 -T---TTAT
1 GTAAGTTAT
23367542 GTAAG-T-T
1 GTAAGTTAT
**
23367549 GTATTTTAT
1 GTAAGTTAT
23367558 GTAAGTTAT
1 GTAAGTTAT
*
23367567 -TTA-TTAT
1 GTAAGTTAT
* *
23367574 GTAAGCTAC
1 GTAAGTTAT
23367583 GTAAGTTAT
1 GTAAGTTAT
*
23367592 GT-A-TCAT
1 GTAAGTTAT
*
23367599 GTAAGCTAT
1 GTAAGTTAT
23367608 GTAAG-T-T
1 GTAAGTTAT
**
23367615 GTATTTTAT
1 GTAAGTTAT
23367624 GTAAGTTAT
1 GTAAGTTAT
*
23367633 -TTA-TTAT
1 GTAAGTTAT
*
23367640 GTAAGCTAT
1 GTAAGTTAT
*
23367649 GTAAGTTGT
1 GTAAGTTAT
23367658 GT-A-TTAT
1 GTAAGTTAT
*
23367665 GTAAGCTAT
1 GTAAGTTAT
23367674 GT-A-TTAT
1 GTAAGTTAT
*
23367681 GTTAGTTAT
1 GTAAGTTAT
23367690 GTAAGTTAT
1 GTAAGTTAT
23367699 GT-A-TTAT
1 GTAAGTTAT
*
23367706 GTATGTTAT
1 GTAAGTTAT
*
23367715 GTAAGTTGT
1 GTAAGTTAT
*
23367724 GT-AG-AAT
1 GTAAGTTAT
*
23367731 GTAAGCTAT
1 GTAAGTTAT
23367740 GTAAGTTAT
1 GTAAGTTAT
*
23367749 GTGAGTAATATAT
1 GT-A--AGT-TAT
23367762 GTAAGTTAT
1 GTAAGTTAT
* *
23367771 GTATAATAAT
1 GTA-AGTTAT
**
23367781 -TAA--TCG
1 GTAAGTTAT
* *
23367787 GCCAAGTTGT
1 G-TAAGTTAT
*
23367797 G-AA-TAAT
1 GTAAGTTAT
*
23367804 GTAAGTTGT
1 GTAAGTTAT
*
23367813 GAAAGTTAT
1 GTAAGTTAT
23367822 GT-A-TTAT
1 GTAAGTTAT
23367829 GTAAGTTAT
1 GTAAGTTAT
*
23367838 TTAAGTTAT
1 GTAAGTTAT
*
23367847 GTAATAAGTTGT
1 G---TAAGTTAT
23367859 GT-A-TTAT
1 GTAAGTTAT
*
23367866 TTAAGTTAT
1 GTAAGTTAT
*
23367875 TTAAGTTAT
1 GTAAGTTAT
23367884 GTA
1 GTA
23367887 TTATGAAATT
Statistics
Matches: 342, Mismatches: 67, Indels: 106
0.66 0.13 0.21
Matches are distributed among these distances:
4 2 0.01
5 1 0.00
6 1 0.00
7 73 0.21
8 44 0.13
9 190 0.56
10 10 0.03
11 3 0.01
12 12 0.04
13 6 0.02
ACGTcount: A:0.32, C:0.03, G:0.19, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:23367439 original size:16 final size:16
Alignment explanation
Indices: 23367420--23367774 Score: 122
Period size: 16 Copynumber: 22.1 Consensus size: 16
23367410 TATTAAGTAA
23367420 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
*
23367436 ATTATATAAGTTATGT
1 ATTATGTAAGTTATGT
*
23367452 AAGTTACGT-A-TTATGT
1 -A-TTATGTAAGTTATGT
*
23367468 AAGTTATGTAAGTTATTT
1 -A-TTATGTAAGTTATGT
*
23367486 ATTATGTAAGCTATGT
1 ATTATGTAAGTTATGT
23367502 AAGTTATGT-A-TTATGT
1 -A-TTATGTAAGTTATGT
*
23367518 AAGCTATGTCATAGACTT-T-T
1 -A-TTATGT-A-AG--TTATGT
* *
23367538 -TTATGTAAGTTGTAT
1 ATTATGTAAGTTATGT
* *
23367553 TTTATGTAAGTTATTT
1 ATTATGTAAGTTATGT
* *
23367569 ATTATGTAAGCTACGT
1 ATTATGTAAGTTATGT
*
23367585 AAGTTATGT-A-TCATGT
1 -A-TTATGTAAGTTATGT
* * *
23367601 AAGCTATGTAAGTTGTAT
1 -A-TTATGTAAGTTATGT
* *
23367619 TTTATGTAAGTTATTT
1 ATTATGTAAGTTATGT
23367635 ATTATGT-A---A-G-
1 ATTATGTAAGTTATGT
* *
23367645 -CTATGTAAGTTGTGT
1 ATTATGTAAGTTATGT
*
23367660 ATTATGTAAGCTATGT
1 ATTATGTAAGTTATGT
*
23367676 ATTATGTTAGTTATGT
1 ATTATGTAAGTTATGT
23367692 AAGTTATGT-A-TTATGT
1 -A-TTATGTAAGTTATGT
*
23367708 ATGTTATGTAAGTTGTGT
1 A--TTATGTAAGTTATGT
** *
23367726 AGAATGTAAGCTATGT
1 ATTATGTAAGTTATGT
* *
23367742 AAGTTATGTGAG-TA-AT
1 -A-TTATGTAAGTTATGT
23367758 A-TATGTAAGTTATGT
1 ATTATGTAAGTTATGT
23367773 AT
1 AT
23367775 AATAATTAAT
Statistics
Matches: 256, Mismatches: 47, Indels: 72
0.68 0.13 0.19
Matches are distributed among these distances:
9 5 0.02
10 1 0.00
12 1 0.00
13 9 0.04
14 4 0.02
15 8 0.03
16 161 0.63
17 20 0.08
18 42 0.16
19 1 0.00
20 1 0.00
21 1 0.00
22 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:23367449 original size:25 final size:25
Alignment explanation
Indices: 23367408--23367773 Score: 230
Period size: 25 Copynumber: 14.8 Consensus size: 25
23367398 TATATATTTC
* *
23367408 TGTATTAAGTAAATTATGTAAGTTA
1 TGTATTATGTAAGTTATGTAAGTTA
*
23367433 TGTATTATATAAGTTATGTAAGTTA
1 TGTATTATGTAAGTTATGTAAGTTA
*
23367458 CGTATTATGTAAGTTATGTAAGTTA
1 TGTATTATGTAAGTTATGTAAGTTA
* *
23367483 TTTATTATGTAAGCTATGTAAGTTA
1 TGTATTATGTAAGTTATGTAAGTTA
*
23367508 TGTATTATGTAAGCTATGTCATAGACTT-
1 TGTATTATGTAAGTTATGT-A-AG--TTA
**
23367536 T-T-TTATGTAAG-T-TGTATTTTA
1 TGTATTATGTAAGTTATGTAAGTTA
* *
23367557 TGTAAGTTAT-TTA-TTATGTAAGCTA
1 TGT-A-TTATGTAAGTTATGTAAGTTA
* * *
23367582 CGTAAGTTATGT-A-TCATGTAAGCTA
1 TGT-A-TTATGTAAGTTATGTAAGTTA
* **
23367607 TGTAAGT-TGTATTTTATGTAAGTTA
1 TGT-ATTATGTAAGTTATGTAAGTTA
* * *
23367632 TTTATTATGTAAGCTATGTAAGTTG
1 TGTATTATGTAAGTTATGTAAGTTA
*
23367657 TGTATTATGTAAGCTATGT-A-TTA
1 TGTATTATGTAAGTTATGTAAGTTA
23367680 TGTTAGTTATGTAAGTTATGT-A-TTA
1 TG-TA-TTATGTAAGTTATGTAAGTTA
* *
23367705 TGTATGTTATGTAAGTTGTGT-AG-AA
1 TGTA--TTATGTAAGTTATGTAAGTTA
* *
23367730 TGTAAGCTATGTAAGTTATGTGAG-TA
1 TGT-A-TTATGTAAGTTATGTAAGTTA
*
23367756 -ATA-TATGTAAGTTATGTA
1 TGTATTATGTAAGTTATGTA
23367774 TAATAATTAA
Statistics
Matches: 282, Mismatches: 38, Indels: 45
0.77 0.10 0.12
Matches are distributed among these distances:
20 2 0.01
21 1 0.00
22 15 0.05
23 8 0.03
24 15 0.05
25 220 0.78
26 15 0.05
27 3 0.01
28 1 0.00
29 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.46
Consensus pattern (25 bp):
TGTATTATGTAAGTTATGTAAGTTA
Found at i:23367472 original size:41 final size:42
Alignment explanation
Indices: 23367420--23367717 Score: 175
Period size: 41 Copynumber: 7.0 Consensus size: 42
23367410 TATTAAGTAA
*
23367420 ATTATGTAAGTTATGTA-TTATATAAGTTATGTAAGTTACGT
1 ATTATGTAAGTTATGTAGTTATATAAGTTATGTAAGTTATGT
*
23367461 ATTATGTAAGTTATGTAAGTTATTTATTATGTAAGCTATGTAAGTTATGT
1 ATTATGTAAGTTATGT-AG----TTA-TA--TAAGTTATGTAAGTTATGT
* * *** * *
23367511 ATTATGTAAGCTATGTCA--TAGACTTTTTTATGTAAGTTGTAT
1 ATTATGTAAGTTATGT-AGTTATA-TAAGTTATGTAAGTTATGT
* * * * *
23367553 TTTATGTAAGTTATTTA-TTATGTAAGCTACGTAAGTTATGT
1 ATTATGTAAGTTATGTAGTTATATAAGTTATGTAAGTTATGT
* * * * *
23367594 ATCATGTAAGCTATGTAAGTTGTAT--TTTATGTAAGTTATTT
1 ATTATGTAAGTTATGT-AGTTATATAAGTTATGTAAGTTATGT
* * * *
23367635 ATTATGTAAGCTATGTAAGTTGTGT-A-TTATGTAAGCTATGT
1 ATTATGTAAGTTATGT-AGTTATATAAGTTATGTAAGTTATGT
* * *
23367676 ATTATGTTAGTTATGTAAGTTATGT-A-TTATGTATGTTATGT
1 ATTATGTAAGTTATGT-AGTTATATAAGTTATGTAAGTTATGT
23367717 A
1 A
23367718 AGTTGTGTAG
Statistics
Matches: 201, Mismatches: 43, Indels: 26
0.74 0.16 0.10
Matches are distributed among these distances:
41 126 0.63
42 30 0.15
43 5 0.02
44 2 0.01
47 3 0.01
48 2 0.01
50 33 0.16
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.48
Consensus pattern (42 bp):
ATTATGTAAGTTATGTAGTTATATAAGTTATGTAAGTTATGT
Found at i:23367490 original size:66 final size:67
Alignment explanation
Indices: 23367420--23367748 Score: 334
Period size: 66 Copynumber: 5.0 Consensus size: 67
23367410 TATTAAGTAA
* * *
23367420 ATTATGTAAGTTATGTATTATATAAGTTATGTAAGTTACGTATTATGTAAGTTATGTAAGTTAT-
1 ATTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATGTATTATGTAAGCTATGTAAGTTATA
23367484 TT
66 TT
* * ****
23367486 ATTATGTAAGCTATGTAAGTTATGT-A-TTATGTAAGCTATGTCA-TA-GACTTTTTTATGTAAG
1 ATTATGTAAGTTATGT-A-TTATGTAAGTTATGTAAGTTATGT-ATTATG--TAAGCTATGTAAG
*
23367547 TTGTATT
61 TTATATT
* * * * *
23367554 -TTATGTAAGTTATTTATTATGTAAGCTACGTAAGTTATGTATCATGTAAGCTATGTAAGTTGTA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATGTATTATGTAAGCTATGTAAGTTATA
23367618 TT
66 TT
* * * *
23367620 -TTATGTAAGTTATTTATTATGTAAGCTATGTAAGTTGTGTATTATGTAAGCTATGT-A-TTATG
1 ATTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATGTATTATGTAAGCTATGTAAGTTATA
23367682 TT
66 TT
* * **
23367684 AGTTATGTAAGTTATGTATTATGTATGTTATGTAAGTTGTGTAGAATGTAAGCTATGTAAGTTAT
1 A-TTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATGTATTATGTAAGCTATGTAAGTTAT
23367749 GTGAGTAATA
Statistics
Matches: 221, Mismatches: 28, Indels: 26
0.80 0.10 0.09
Matches are distributed among these distances:
64 5 0.02
65 8 0.04
66 153 0.69
67 43 0.19
68 12 0.05
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (67 bp):
ATTATGTAAGTTATGTATTATGTAAGTTATGTAAGTTATGTATTATGTAAGCTATGTAAGTTATA
TT
Found at i:23367733 original size:41 final size:41
Alignment explanation
Indices: 23367583--23367742 Score: 121
Period size: 41 Copynumber: 3.9 Consensus size: 41
23367573 TGTAAGCTAC
* * * * * *
23367583 GTAAGTTATGTATCATGTAAGCT-ATGTAAGTTGTATTTTAT
1 GTAAGCTATGTATTATGTTAG-TAATGTAAGTTATGTATTAT
* * * *
23367624 GTAAGTTATTTATTATGTAAGCT-ATGTAAGTTGTGTATTAT
1 GTAAGCTATGTATTATGTTAG-TAATGTAAGTTATGTATTAT
*
23367665 GTAAGCTATGTATTATGTTAGTTATGTAAGTTATGTATTAT
1 GTAAGCTATGTATTATGTTAGTAATGTAAGTTATGTATTAT
* * * *
23367706 GTATGTTATGTAAGT-TGTGTAG-AATGTAAGCTATGTA
1 GTAAGCTATGT-ATTATGT-TAGTAATGTAAGTTATGTA
23367743 AGTTATGTGA
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.01
41 97 0.94
42 5 0.05
ACGTcount: A:0.29, C:0.03, G:0.21, T:0.46
Consensus pattern (41 bp):
GTAAGCTATGTATTATGTTAGTAATGTAAGTTATGTATTAT
Found at i:23367830 original size:25 final size:25
Alignment explanation
Indices: 23367802--23367849 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23367792 GTTGTGAATA
*
23367802 ATGTAAGTTGTGAAAGTTATGTATT
1 ATGTAAGTTATGAAAGTTATGTATT
**
23367827 ATGTAAGTTATTTAAGTTATGTA
1 ATGTAAGTTATGAAAGTTATGTA
23367850 ATAAGTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (25 bp):
ATGTAAGTTATGAAAGTTATGTATT
Found at i:23367856 original size:37 final size:37
Alignment explanation
Indices: 23367815--23367886 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
23367805 TAAGTTGTGA
23367815 AAGTTATGTATTATGTAAGTTATTTAAGTTATGTAAT
1 AAGTTATGTATTATGTAAGTTATTTAAGTTATGTAAT
* *
23367852 AAGTTGTGTATTATTTAAGTTATTTAAGTTATGTA
1 AAGTTATGTATTATGTAAGTTATTTAAGTTATGTA
23367887 TTATGAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (37 bp):
AAGTTATGTATTATGTAAGTTATTTAAGTTATGTAAT
Found at i:23368760 original size:17 final size:16
Alignment explanation
Indices: 23368714--23368750 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
23368704 AACTTTTCAA
23368714 TTTAAAAAA-AATATTT
1 TTTAAAAAATAA-ATTT
23368730 TTTAAAAAATAAATTT
1 TTTAAAAAATAAATTT
23368746 TTTAA
1 TTTAA
23368751 TAATTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 18 0.90
17 2 0.10
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TTTAAAAAATAAATTT
Found at i:23370888 original size:16 final size:16
Alignment explanation
Indices: 23370867--23370906 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
23370857 TAATTATTTA
23370867 AAAAAATTTATTTTTG
1 AAAAAATTTATTTTTG
* *
23370883 AAAAAA-ATATTTTTT
1 AAAAAATTTATTTTTG
23370898 AAAAAATTT
1 AAAAAATTT
23370907 TAAATTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
AAAAAATTTATTTTTG
Found at i:23372858 original size:22 final size:24
Alignment explanation
Indices: 23372806--23372859 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
23372796 TTTTTGATGA
23372806 TTAAATTATTGTTATTAAATATTC
1 TTAAATTATTGTTATTAAATATTC
* *
23372830 TTGAAATTATTG-TATTATATCTT-
1 TT-AAATTATTGTTATTAAATATTC
23372853 TTAAATT
1 TTAAATT
23372860 GGATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 5 0.19
23 2 0.07
24 11 0.41
25 9 0.33
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (24 bp):
TTAAATTATTGTTATTAAATATTC
Found at i:23378057 original size:20 final size:20
Alignment explanation
Indices: 23378029--23378067 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23378019 TTTAACAATT
23378029 TATAATTTT-TTAGATTTTTA
1 TATAATTTTATTA-ATTTTTA
*
23378049 TATACTTTTATTAATTTTT
1 TATAATTTTATTAATTTTT
23378068 GAATGGTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TATAATTTTATTAATTTTTA
Done.