Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 83 of 214
Found at i:23380086 original size:41 final size:41
Alignment explanation
Indices: 23380029--23380240 Score: 318
Period size: 41 Copynumber: 5.2 Consensus size: 41
23380019 CCTATAAATT
23380029 TAAAGCCCCCAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
1 TAAAGCCCCCAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* * *
23380070 TAAAGCCCCCAGCATTAGCGGTGCTTTTTCAAAAACGCTGC
1 TAAAGCCCCCAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* *
23380111 TAAAACCCCCAGCATTAGCGGCGATTCTTCAAAAACGCCGC
1 TAAAGCCCCCAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* *
23380152 TAAAGCCCTCAGAATTAGCGGTC-CTTCTTCAAAAACGCCGC
1 TAAAGCCCCCAGCATTAGCGG-CGCTTCTTCAAAAACGCCGC
* * *
23380193 TAAAGCCCCCAGCATTAGTGGCGCTTTTTCAAAAACGCCCC
1 TAAAGCCCCCAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
23380234 TAAAGCC
1 TAAAGCC
23380241 ACGAAAGGTA
Statistics
Matches: 152, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 1 0.01
41 150 0.99
42 1 0.01
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.20
Consensus pattern (41 bp):
TAAAGCCCCCAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
Found at i:23385228 original size:45 final size:45
Alignment explanation
Indices: 23385177--23385352 Score: 208
Period size: 45 Copynumber: 3.9 Consensus size: 45
23385167 GTAAGAAAAT
* *
23385177 CAACACCAGTACATAGTCCCTGTTGTATGTATATGGCATGATAGC
1 CAACACCGGTACATAGTACCTGTTGTATGTATATGGCATGATAGC
* * * * *
23385222 CAACACCGGTACATAGTACCTATTTTATTTATATGGCATGAAAAC
1 CAACACCGGTACATAGTACCTGTTGTATGTATATGGCATGATAGC
* * * **
23385267 CAACACTGGTAAATAGTATCTGTTGTATGTATACAGCATGATAGC
1 CAACACCGGTACATAGTACCTGTTGTATGTATATGGCATGATAGC
* * * *
23385312 CAACACTGGTACATACTACTTGTTGTATTTATATGGCATGA
1 CAACACCGGTACATAGTACCTGTTGTATGTATATGGCATGA
23385353 AATTTGGCAC
Statistics
Matches: 107, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 107 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (45 bp):
CAACACCGGTACATAGTACCTGTTGTATGTATATGGCATGATAGC
Found at i:23385373 original size:90 final size:90
Alignment explanation
Indices: 23385171--23385389 Score: 267
Period size: 90 Copynumber: 2.4 Consensus size: 90
23385161 GTTAAAGTAA
* ** **
23385171 GAAAATCAACACCAGTACATAGTCCCTGTTGTATGTATATGGCATGATAGCCAACACCGGTACAT
1 GAAAACCAACACCAGTACATAGTATCTGTTGTATGTATACAGCATGATAGCCAACACCGGTACAT
* *
23385236 AGTACCTATTTTATTTATATGGCAT
66 ACTACCTATTGTATTTATATGGCAT
** * *
23385261 GAAAACCAACACTGGTAAATAGTATCTGTTGTATGTATACAGCATGATAGCCAACACTGGTACAT
1 GAAAACCAACACCAGTACATAGTATCTGTTGTATGTATACAGCATGATAGCCAACACCGGTACAT
* *
23385326 ACTACTTGTTGTATTTATATGGCAT
66 ACTACCTATTGTATTTATATGGCAT
***** *
23385351 GAAATTTGGCACCAGTACATAGTATTTGTTGTATGTATA
1 GAAAACCAACACCAGTACATAGTATCTGTTGTATGTATA
23385390 TTCTAATTAT
Statistics
Matches: 107, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
90 107 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (90 bp):
GAAAACCAACACCAGTACATAGTATCTGTTGTATGTATACAGCATGATAGCCAACACCGGTACAT
ACTACCTATTGTATTTATATGGCAT
Found at i:23392728 original size:20 final size:20
Alignment explanation
Indices: 23392703--23392740 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23392693 ACCCCCTTTA
23392703 TTAACATAAA-AATTTAAAAT
1 TTAACA-AAATAATTTAAAAT
23392723 TTAACAAAATAATTTAAA
1 TTAACAAAATAATTTAAA
23392741 CTAGAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
TTAACAAAATAATTTAAAAT
Found at i:23400521 original size:81 final size:81
Alignment explanation
Indices: 23400396--23400558 Score: 245
Period size: 81 Copynumber: 2.0 Consensus size: 81
23400386 CAATGCACTT
** *
23400396 ACATTAAAATGTAATGACAATAAAAATGCAACGACAATGCTCACTAACAAAATGAAAATTACAAT
1 ACATTAAAATACAATGACAATAAAAATGCAACGACAATGCTCACTAACAAAATGAAAATTACAAC
23400461 TACATGCAATGCATGA
66 TACATGCAATGCATGA
* * * * * *
23400477 ACATTAAAATACAATGACAGTAAACATGCAACGACAATGTTCACTAATAAGATGAAAATTACAGC
1 ACATTAAAATACAATGACAATAAAAATGCAACGACAATGCTCACTAACAAAATGAAAATTACAAC
23400542 TACATGCAATGCATGA
66 TACATGCAATGCATGA
23400558 A
1 A
23400559 TACTACAGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.49, C:0.17, G:0.12, T:0.22
Consensus pattern (81 bp):
ACATTAAAATACAATGACAATAAAAATGCAACGACAATGCTCACTAACAAAATGAAAATTACAAC
TACATGCAATGCATGA
Found at i:23405610 original size:49 final size:49
Alignment explanation
Indices: 23405490--23405611 Score: 131
Period size: 49 Copynumber: 2.5 Consensus size: 49
23405480 AGAGGTCCCT
* * *
23405490 ATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCTATGTAAGACC
1 ATGTCTGGGACATGGCATTGGCA-CGATAGGAGAACTCCCATGTAAGACC
* * **
23405540 ATATCTAGGATGTGGCATTGGCA-GTATAGGA-AACATCCCATGTAAGACC
1 ATGTCTGGGACATGGCATTGGCACG-ATAGGAGAAC-TCCCATGTAAGACC
*
23405589 ATGTCTGGGACATGGCTTTGGCA
1 ATGTCTGGGACATGGCATTGGCA
23405612 TGTTATTATC
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
48 4 0.07
49 36 0.62
50 18 0.31
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (49 bp):
ATGTCTGGGACATGGCATTGGCACGATAGGAGAACTCCCATGTAAGACC
Found at i:23408256 original size:22 final size:23
Alignment explanation
Indices: 23408213--23408269 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
23408203 GATCAGGAAA
*
23408213 TGCTCCTGTAATATCCCAAAAAT
1 TGCTACTGTAATATCCCAAAAAT
*
23408236 TGCTACTGTAATACCCCAAAAAT
1 TGCTACTGTAATATCCCAAAAAT
* *
23408259 TACTACAGTAA
1 TGCTACTGTAA
23408270 GAAAGTAGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.28
Consensus pattern (23 bp):
TGCTACTGTAATATCCCAAAAAT
Found at i:23415376 original size:55 final size:50
Alignment explanation
Indices: 23415290--23415427 Score: 152
Period size: 50 Copynumber: 2.7 Consensus size: 50
23415280 AAGAGAACCA
* * * *
23415290 ATGTAAGATCATGTTTGGGACATGGCATTGGCATCATTGAGACTTGAGAGGTCCC
1 ATGTAAGACCATGTCTGAGACATGGCATTGGCA-C--CGAGA--TGAGAGGTCCC
*
23415345 ATGTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCC
1 ATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGATGAGAGGTCCC
**
23415395 CCGTAAGACCATGTCT-AGGACATGGCATTGGCA
1 ATGTAAGACCATGTCTGA-GACATGGCATTGGCA
23415428 GTACAGGAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
49 1 0.01
50 39 0.53
52 4 0.05
54 1 0.01
55 29 0.39
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (50 bp):
ATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGATGAGAGGTCCC
Found at i:23421067 original size:17 final size:16
Alignment explanation
Indices: 23421036--23421069 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
23421026 AAATATAATG
23421036 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
23421052 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
23421069 A
1 A
23421070 GGCTATCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:23422385 original size:56 final size:51
Alignment explanation
Indices: 23422313--23422603 Score: 257
Period size: 50 Copynumber: 5.8 Consensus size: 51
23422303 ATTTGGGTAA
* * * *
23422313 AGAGATCCCATGTAAGACCATGTATGGGACATGACATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC--CGAG---ATG
*
23422369 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA-CCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCGAGATG
*
23422419 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAT-CGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCGAGATG
* * * *
23422469 AGAGGTCCC-------ACCATGTCTAGGACATGGCATGGGCA-CCAATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCGAGATG
** * * *
23422512 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTAC-A-A-G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-TCCGAGATG
* ** * *
23422561 AAACATCCCATGTAAGAACATGTCTGGGACATGGCTTTGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
23422604 GTTATTATCA
Statistics
Matches: 198, Mismatches: 26, Indels: 30
0.78 0.10 0.12
Matches are distributed among these distances:
43 35 0.18
48 1 0.01
49 36 0.18
50 82 0.41
51 1 0.01
52 1 0.01
53 3 0.02
55 1 0.01
56 38 0.19
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (51 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCGAGATG
Found at i:23422490 original size:93 final size:93
Alignment explanation
Indices: 23422385--23422553 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 93
23422375 CCCATGTAAG
* * ** *
23422385 ACCATGTCTAGGACATGGCATTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACA
1 ACCATGTCTAGGACATGGCATGGGCACCAAGATGAGAACTCCCATGTAAGACCATATCTGGGACA
*
23422450 TGGCGTTGGCATCGAGATGAGAGGTCCC
66 TGGCATTGGCATCGAGATGAGAGGTCCC
* *
23422478 ACCATGTCTAGGACATGGCATGGGCACCAATATGAGAACTCCCATGTAAGACCATATCTGGGATA
1 ACCATGTCTAGGACATGGCATGGGCACCAAGATGAGAACTCCCATGTAAGACCATATCTGGGACA
23422543 TGGCATTGGCA
66 TGGCATTGGCA
23422554 GTACAAGAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (93 bp):
ACCATGTCTAGGACATGGCATGGGCACCAAGATGAGAACTCCCATGTAAGACCATATCTGGGACA
TGGCATTGGCATCGAGATGAGAGGTCCC
Found at i:23422521 original size:43 final size:43
Alignment explanation
Indices: 23422435--23422521 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
23422425 CCCATGTAAG
* * * * * **
23422435 ACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCC
1 ACCATGTCTAGGACATGGCATGGGCACCAAGATGAGAACTCCC
*
23422478 ACCATGTCTAGGACATGGCATGGGCACCAATATGAGAACTCCC
1 ACCATGTCTAGGACATGGCATGGGCACCAAGATGAGAACTCCC
23422521 A
1 A
23422522 TGTAAGACCA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (43 bp):
ACCATGTCTAGGACATGGCATGGGCACCAAGATGAGAACTCCC
Found at i:23424133 original size:27 final size:27
Alignment explanation
Indices: 23424103--23424156 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
23424093 CTGGGATCCC
23424103 CAACATGAATATTCAACATTATACTAA
1 CAACATGAATATTCAACATTATACTAA
23424130 CAACATGAATATTCAACATTATACTAA
1 CAACATGAATATTCAACATTATACTAA
23424157 GTGTTCACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.19, G:0.04, T:0.30
Consensus pattern (27 bp):
CAACATGAATATTCAACATTATACTAA
Found at i:23429064 original size:68 final size:68
Alignment explanation
Indices: 23428955--23429093 Score: 242
Period size: 68 Copynumber: 2.0 Consensus size: 68
23428945 TTGCAAAACA
* * *
23428955 AAATTGAAAGAGAAGAGCTTGGGGAGCAATGGACAAGAAAACAAAGCTTAAAGGAAAAGTATATT
1 AAATTGAAAGAGAAGAGCTTGGGGAACAAGGGACAACAAAACAAAGCTTAAAGGAAAAGTATATT
23429020 GTG
66 GTG
*
23429023 AAATTGAAAGAGAAGAGCTTGGGGAACAAGGGACAACAAAACAAAGCTTAAAGGAAAATTATATT
1 AAATTGAAAGAGAAGAGCTTGGGGAACAAGGGACAACAAAACAAAGCTTAAAGGAAAAGTATATT
23429088 GTG
66 GTG
23429091 AAA
1 AAA
23429094 CTATATATGG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.49, C:0.08, G:0.26, T:0.17
Consensus pattern (68 bp):
AAATTGAAAGAGAAGAGCTTGGGGAACAAGGGACAACAAAACAAAGCTTAAAGGAAAAGTATATT
GTG
Found at i:23433111 original size:56 final size:56
Alignment explanation
Indices: 23433025--23433155 Score: 183
Period size: 56 Copynumber: 2.3 Consensus size: 56
23433015 TAGCAATCGC
* * * *
23433025 TACCCTCTATTTTCT-TCTAAGGGATTTCTCCTTCCAAAAATGACTCTCCAACCGTG
1 TACCCCCTATTTT-TGTTTAAGGGATTTCTCCTACAAAAAATGACTCTCCAACCGTG
* *
23433081 TACCCCCTATTTTTGTTTAAGGGATTTCTCCTACAAAAAATGACTCTCCAACTGTT
1 TACCCCCTATTTTTGTTTAAGGGATTTCTCCTACAAAAAATGACTCTCCAACCGTG
23433137 TACCCCCTATTTTTAGTTT
1 TACCCCCTATTTTT-GTTT
23433156 TTATTTTTTG
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
55 1 0.01
56 62 0.93
57 4 0.06
ACGTcount: A:0.24, C:0.27, G:0.10, T:0.39
Consensus pattern (56 bp):
TACCCCCTATTTTTGTTTAAGGGATTTCTCCTACAAAAAATGACTCTCCAACCGTG
Found at i:23434276 original size:36 final size:36
Alignment explanation
Indices: 23434203--23434276 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 36
23434193 AGAGGAGCAC
** * * *
23434203 ATCAGTCAGAATAGATCTGAAAGACTGCTGAATTGA
1 ATCAGTCAGAATAGATCCAAAAGACTACTAAACTGA
* *
23434239 ATCAGTTAGAATAGATCCAAAAGGCTACTAAACTGA
1 ATCAGTCAGAATAGATCCAAAAGACTACTAAACTGA
23434275 AT
1 AT
23434277 ATAGTTTACT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.42, C:0.15, G:0.19, T:0.24
Consensus pattern (36 bp):
ATCAGTCAGAATAGATCCAAAAGACTACTAAACTGA
Found at i:23450744 original size:27 final size:27
Alignment explanation
Indices: 23450706--23450929 Score: 256
Period size: 27 Copynumber: 8.3 Consensus size: 27
23450696 ATTCATGGGC
* ** *
23450706 AAAATGACTGAAATACCCTAAAAAGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
*
23450733 AAAATGACTGAAATACCCTCGAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
*
23450760 AAAATGACCGAAATACCCTCTAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* **
23450787 AAAATGTCTAAAATACCCTCGAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* *
23450814 AAAATGACCAAAATACCCTCAAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* *
23450841 GAACTGACCGAAATACCC-CTGAAGGGT
1 AAAATGACCGAAATACCCTC-GAAGGGT
* *
23450868 AAAATGACCGAAATACCC-CTGAAAGAT
1 AAAATGACCGAAATACCCTC-GAAGGGT
*
23450895 AAAATGACCGAAATACCC-CCATAGGGT
1 AAAATGACCGAAATACCCTCGA-AGGGT
23450922 AAAATGAC
1 AAAATGAC
23450930 TGTTATACTC
Statistics
Matches: 172, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 170 0.99
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.17
Consensus pattern (27 bp):
AAAATGACCGAAATACCCTCGAAGGGT
Found at i:23450849 original size:81 final size:81
Alignment explanation
Indices: 23450706--23450929 Score: 290
Period size: 81 Copynumber: 2.8 Consensus size: 81
23450696 ATTCATGGGC
** * *
23450706 AAAATGACTGAAATACCCTAAAAAGGTAAAATGACTGAAATACCCTCGAAGGGTAAAATGACCGA
1 AAAATGACTGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCGA
23450771 AATACCCTCT-AAGGGT
66 AATACCC-CTGAAGGGT
* * * * * *
23450787 AAAATGTCTAAAATACCCTCGAAGGGTAAAATGACCAAAATACCCTCAAAGGGTGAACTGACCGA
1 AAAATGACTGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCGA
23450852 AATACCCCTGAAGGGT
66 AATACCCCTGAAGGGT
* * * *
23450868 AAAATGACCGAAATACCC-CTGAAAGATAAAATGACCGAAATACCCCCATAGGGTAAAATGAC
1 AAAATGACTGAAATACCCTC-GAAAGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGAC
23450930 TGTTATACTC
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 3 0.02
81 118 0.98
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.17
Consensus pattern (81 bp):
AAAATGACTGAAATACCCTCGAAAGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGACCGA
AATACCCCTGAAGGGT
Found at i:23451315 original size:30 final size:28
Alignment explanation
Indices: 23451258--23451348 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
23451248 ATTGTAATGA
23451258 TTACTGTATTGGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
23451286 TTACTGTATTGGGCTAAGGCTCACACACTG
1 TTACTGTATTGGGCTAAGGC-C-CACACTG
* *
23451316 TTACTGTAATAGGCTAAGGCCCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTG
23451344 -TACTG
1 TTACTG
23451349 ATACTGTATA
Statistics
Matches: 59, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
27 5 0.08
28 27 0.46
29 2 0.03
30 25 0.42
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTG
Found at i:23454269 original size:40 final size:40
Alignment explanation
Indices: 23454214--23454452 Score: 248
Period size: 40 Copynumber: 6.0 Consensus size: 40
23454204 GTGCATTCTG
* ** ** *
23454214 GGGTACCAAAGTACAATTAACGATACGTATGTGTAATCAA
1 GGGTACCGAAGTACAATTAGGGGCACGTATGTGCAATCAA
** * * *
23454254 GGGTACCGAAGTACAAACCA-GGGCATGTATCTGCAATCAG
1 GGGTACCGAAGTAC-AATTAGGGGCACGTATGTGCAATCAA
* * *
23454294 GGGTATCGAAGTACAATCAGGGGCACGTATGTGTAATCAA
1 GGGTACCGAAGTACAATTAGGGGCACGTATGTGCAATCAA
* * * * * *
23454334 CGGTATCGGAGTACAAATAGGGGCACATATGTGCAATCAG
1 GGGTACCGAAGTACAATTAGGGGCACGTATGTGCAATCAA
23454374 GGGTACCGAAGTACAATTAGGGGCACGTATGTGCAA-CTAA
1 GGGTACCGAAGTACAATTAGGGGCACGTATGTGCAATC-AA
* *
23454414 GGGTACCGAAGTACAAATAGGTGCACGTATGTGCAATCA
1 GGGTACCGAAGTACAATTAGGGGCACGTATGTGCAATCA
23454453 GTCATTAGTT
Statistics
Matches: 164, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
39 5 0.03
40 155 0.95
41 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.21
Consensus pattern (40 bp):
GGGTACCGAAGTACAATTAGGGGCACGTATGTGCAATCAA
Found at i:23477092 original size:27 final size:26
Alignment explanation
Indices: 23477062--23477237 Score: 163
Period size: 27 Copynumber: 6.5 Consensus size: 26
23477052 AATTGTACAG
23477062 CACTAAGTGTGCGATTTGACTATGTTA
1 CACTAAGTGTGCGATTTGACTATG-TA
** * *
23477089 CACTAAGTGTGCGAAATGAATATGATG
1 CACTAAGTGTGCGATTTGACTATG-TA
* * **
23477116 CACTAAGTGTGCGAATTGACCATGCGG
1 CACTAAGTGTGCGATTTGACTATG-TA
23477143 CACTAAGTGTGCGAGTTTGACTATGTA
1 CACTAAGTGTGCGA-TTTGACTATGTA
* *
23477170 GCACTAAGTGTGCGATTTGATTACGTA
1 -CACTAAGTGTGCGATTTGACTATGTA
* * *
23477197 GCACTAAGTGTGCGAGTTGATTATATA
1 -CACTAAGTGTGCGATTTGACTATGTA
*
23477224 GCACTGAGTGTGCG
1 -CACTAAGTGTGCG
23477238 GACTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (26 bp):
CACTAAGTGTGCGATTTGACTATGTA
Found at i:23477121 original size:54 final size:54
Alignment explanation
Indices: 23477060--23477237 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 54
23477050 TAAATTGTAC
*
23477060 AGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGAATTGAATATGAT
* * ** * *
23477115 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATG-TACACTAAGTGTGCGA-ATTGAATATGAT
* * * *
23477169 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTA-CACTAAGTGTGCGAATTGAATATGAT
*
23477223 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23477238 GACTCAATAT
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
54 60 0.59
55 42 0.41
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTACACTAAGTGTGCGAATTGAATATGAT
Found at i:23477175 original size:82 final size:81
Alignment explanation
Indices: 23477061--23477216 Score: 226
Period size: 82 Copynumber: 1.9 Consensus size: 81
23477051 AAATTGTACA
*
23477061 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23477125 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23477142 GCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGTAGCACTAAGT
*
23477206 GTGCGAGTTGA
64 GTGCGAATTGA
23477217 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
81 17 0.25
82 49 0.73
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23477228 original size:82 final size:81
Alignment explanation
Indices: 23477057--23477237 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
23477047 GATTAAATTG
*
23477057 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
23477122 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23477138 TGCGGCACTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACG-TAGCAC
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTTA-CACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
23477201 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
23477220 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23477238 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTTACACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23486810 original size:12 final size:12
Alignment explanation
Indices: 23486785--23486823 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
23486775 ACTCGCTTCT
* *
23486785 TTACTTACTCAC
1 TTACTTGCTTAC
*
23486797 TTACTTGTTTAC
1 TTACTTGCTTAC
23486809 TTACTTGCTTAC
1 TTACTTGCTTAC
23486821 TTA
1 TTA
23486824 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:23487144 original size:50 final size:51
Alignment explanation
Indices: 23487071--23487166 Score: 140
Period size: 50 Copynumber: 1.9 Consensus size: 51
23487061 TTTTCTGTAC
* *
23487071 TGCCAATGCCATGTCCCAAACATGGTC-TTACAGGGGACTTCTCATCTCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTTACAGGGGACCTCTCATCTCGG
* * *
23487121 TGCCAACGCCATGTCCGAGACATGGTCTTTACATGGGACCTCTCAT
1 TGCCAACGCCATGTCCCAAACATGGTCTTTACAGGGGACCTCTCAT
23487167 AATCTCAATG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
50 24 0.60
51 16 0.40
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (51 bp):
TGCCAACGCCATGTCCCAAACATGGTCTTTACAGGGGACCTCTCATCTCGG
Found at i:23501348 original size:17 final size:16
Alignment explanation
Indices: 23501317--23501350 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
23501307 AAATATTATG
23501317 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
23501333 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
23501350 A
1 A
23501351 TGCCATCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:23506315 original size:27 final size:28
Alignment explanation
Indices: 23506258--23506333 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
23506248 ATTAATTCAG
23506258 CTAAAACATATTAAAAAT-ATGTAATAGA
1 CTAAAACATATT-AAAATCATGTAATAGA
*
23506286 CTAAAACATATTAAAATCATGTACTA-A
1 CTAAAACATATTAAAATCATGTAATAGA
**
23506313 CTATGACATATTTAAAA-CATG
1 CTAAAACATA-TTAAAATCATG
23506334 CATTAAAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 18 0.42
28 25 0.58
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.30
Consensus pattern (28 bp):
CTAAAACATATTAAAATCATGTAATAGA
Found at i:23517743 original size:27 final size:27
Alignment explanation
Indices: 23517713--23517766 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
23517703 TAATCACTTT
23517713 AATTAACAAATAATGATTGAAATCAAC
1 AATTAACAAATAATGATTGAAATCAAC
23517740 AATTAACAAATAATGATTGAAATCAAC
1 AATTAACAAATAATGATTGAAATCAAC
23517767 TTAAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.56, C:0.11, G:0.07, T:0.26
Consensus pattern (27 bp):
AATTAACAAATAATGATTGAAATCAAC
Found at i:23520542 original size:11 final size:12
Alignment explanation
Indices: 23520515--23520543 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23520505 ACAACAAGAA
23520515 CATTCAAATATT
1 CATTCAAATATT
23520527 CATTCAAATA-T
1 CATTCAAATATT
23520538 CATTCA
1 CATTCA
23520544 CCATTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (12 bp):
CATTCAAATATT
Found at i:23522249 original size:243 final size:242
Alignment explanation
Indices: 23521812--23522537 Score: 1014
Period size: 243 Copynumber: 3.0 Consensus size: 242
23521802 CGTCCTCGAA
* * *
23521812 ATTCATACATGTGAATAGCAGAGGATATTGCTCTTTCATTAAACATTCTCTTTCCCAAGTAGCCT
1 ATTCATACCTGTGAATAGCTGAGGATATTGCTCTTTCATTAAACTTTCTCTTTCCCAAGTAGCCT
* * *
23521877 CTT-TTGTATTATGATTTCTCCAT-ATTGCTTTTAGCAAAGGAATCCT-TCTATTTCTAACCTTT
66 CTTCCT-TATTATGATTTCTCCTTAATT--TTTTAGCAAAGGAATCCTCT-TATTTCTAACCTCT
* * * * *
23521939 TTCACCTTTCTTGCCAAGGTACGTATGGGCTCTTCCTTATAAGATAGATTTTGTTCTACCTCTAA
127 TTCACCTTTCTTGCCAAGGTACGAATGGGCTCTTCCTCATAACACAGATTTGGTTCTACCTCTAA
* *
23522004 CTCTTCAAACTACACAACATGGTCTGGATTTGATCTATATCTTCTCAGCCC
192 CTCTTCAAACTACACAACATGGTCTAGATTTAATCTATATCTTCTCAGCCC
** * * * *
23522055 ATTTGTACCTGTGAATATCTGAGGATACTGCTATTTCATTAAACTTTCTCTTTCCCAAGTATCCT
1 ATTCATACCTGTGAATAGCTGAGGATATTGCTCTTTCATTAAACTTTCTCTTTCCCAAGTAGCCT
*
23522120 CTTCCTTATTATGATTTCTCCTTAATTTTTTAAGCAAAGGAATCCTCTTATTTCTAATCTCTTTC
66 CTTCCTTATTATGATTTCTCCTTAATTTTTT-AGCAAAGGAATCCTCTTATTTCTAACCTCTTTC
*
23522185 ACTTTTCTTGCCAAGGTACGAATGGGCTCTTCCTCATAACACAGATTTGGTTCTACCTCTAACTC
130 ACCTTTCTTGCCAAGGTACGAATGGGCTCTTCCTCATAACACAGATTTGGTTCTACCTCTAACTC
*
23522250 TT-AAATCTACACAACATGGTCTAGATTTAATCTATATCTTCTCAGCCT
195 TTCAAA-CTACACAACATGGTCTAGATTTAATCTATATCTTCTCAGCCC
* *
23522298 ATTCATACCTGTGAATAGCTGAGGATATTTCTCTTTCATTAAACTTTCTCTTTCCCAAGCAGCCT
1 ATTCATACCTGTGAATAGCTGAGGATATTGCTCTTTCATTAAACTTTCTCTTTCCCAAGTAGCCT
* ** * * *
23522363 ATTCCACATTATGATTTCAT--TATAATGCTTTCAGCAAAGGAATCCTCTTATTTCTAAGCTCTT
66 CTTCCTTATTATGATTTC-TCCT-TAAT-TTTTTAGCAAAGGAATCCTCTTATTTCTAACCTCTT
*
23522426 TCACCTTTCTTGCCAAGGTACGAATGGGCTCTTCCTCATAACACATATTTGGTTCTACCTCTAAC
128 TCACCTTTCTTGCCAAGGTACGAATGGGCTCTTCCTCATAACACAGATTTGGTTCTACCTCTAAC
* * * *
23522491 TCTGCAACCTTCATAACATGGTCTAGATTTAATCTATATCTTCTCAG
193 TCTTCAAACTACACAACATGGTCTAGATTTAATCTATATCTTCTCAG
23522538 AATAGACACA
Statistics
Matches: 432, Mismatches: 42, Indels: 18
0.88 0.09 0.04
Matches are distributed among these distances:
242 8 0.02
243 413 0.96
244 11 0.03
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (242 bp):
ATTCATACCTGTGAATAGCTGAGGATATTGCTCTTTCATTAAACTTTCTCTTTCCCAAGTAGCCT
CTTCCTTATTATGATTTCTCCTTAATTTTTTAGCAAAGGAATCCTCTTATTTCTAACCTCTTTCA
CCTTTCTTGCCAAGGTACGAATGGGCTCTTCCTCATAACACAGATTTGGTTCTACCTCTAACTCT
TCAAACTACACAACATGGTCTAGATTTAATCTATATCTTCTCAGCCC
Found at i:23524102 original size:15 final size:15
Alignment explanation
Indices: 23524082--23524111 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
23524072 GAGAATGACT
23524082 TTTAGACTATGCATG
1 TTTAGACTATGCATG
23524097 TTTAGACTATGCATG
1 TTTAGACTATGCATG
23524112 AATTAGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (15 bp):
TTTAGACTATGCATG
Found at i:23527688 original size:17 final size:17
Alignment explanation
Indices: 23527668--23527717 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
23527658 AATAAAACAT
*
23527668 ATAATTTAAACACT-AAA
1 ATAATTTAAA-AATAAAA
**
23527685 ATAAGATAAAAATAAAA
1 ATAATTTAAAAATAAAA
23527702 ATAATTT-AAAATAAAA
1 ATAATTTAAAAATAAAA
23527718 TTTAAAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 11 0.41
17 16 0.59
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (17 bp):
ATAATTTAAAAATAAAA
Found at i:23527719 original size:12 final size:12
Alignment explanation
Indices: 23527704--23527729 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23527694 AAATAAAAAT
23527704 AATTTAAAATAA
1 AATTTAAAATAA
23527716 AATTTAAAATAA
1 AATTTAAAATAA
23527728 AA
1 AA
23527730 CTAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AATTTAAAATAA
Found at i:23527728 original size:34 final size:34
Alignment explanation
Indices: 23527668--23527734 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
23527658 AATAAAACAT
*
23527668 ATAATTTAAACACTAAAATAAGATAAAAATAAAA
1 ATAATTTAAACACTAAAATAAAATAAAAATAAAA
*
23527702 ATAATTTAAA-A-TAAAATTTAAAATAAAACTAAA
1 ATAATTTAAACACTAAAA--TAAAATAAAAATAAA
23527735 TTTAAAATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 5 0.17
33 1 0.03
34 23 0.79
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (34 bp):
ATAATTTAAACACTAAAATAAAATAAAAATAAAA
Found at i:23529769 original size:26 final size:26
Alignment explanation
Indices: 23529738--23529884 Score: 131
Period size: 27 Copynumber: 5.5 Consensus size: 26
23529728 GAAGCCCATT
* *
23529738 AGGACTATCTAAGGTGGAAGGCTGCA
1 AGGACTATCTAATGTGGAAGTCTGCA
* *
23529764 ACGACTATCTAATGTGGGAAGTCTGCT
1 AGGACTATCTAATGT-GGAAGTCTGCA
**
23529791 AGGACTATC-ATATGTGGAAGTCCACA
1 AGGACTATCTA-ATGTGGAAGTCTGCA
23529817 AGGACTATCTAATGTGGAAAGT-T-CA
1 AGGACTATCTAATGTGG-AAGTCTGCA
* *
23529842 CTAGGACTATTTAATGTGTGGAGTCTGTCA
1 --AGGACTATCTAATGTG-GAAGTCTG-CA
23529872 A-GACTATCTAATG
1 AGGACTATCTAATG
23529885 CAAGAAGCCC
Statistics
Matches: 99, Mismatches: 12, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
25 2 0.02
26 37 0.37
27 55 0.56
28 3 0.03
30 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
AGGACTATCTAATGTGGAAGTCTGCA
Found at i:23529784 original size:53 final size:52
Alignment explanation
Indices: 23529697--23529884 Score: 164
Period size: 53 Copynumber: 3.5 Consensus size: 52
23529687 TACCATAAAT
* * * * *
23529697 GTGGATAGTCTGTCAAGACTATTTAAAGTTGGAAGCCCATTAGGACTATCTAAG
1 GTGGA-AGTCTG-CAAGACTATCTAATGTGGGAAGTCCACTAGGACTATCTAAG
* ** *
23529751 GTGGAAGGCTGCAACGACTATCTAATGTGGGAAGTCTGCTAGGACTATC-ATAT
1 GTGGAAGTCTGCAA-GACTATCTAATGTGGGAAGTCCACTAGGACTATCTA-AG
** * * *
23529804 GTGGAAGTCCACAAGGACTATCTAATGTGGAAAGTTCACTAGGACTATTTAATG
1 GTGGAAGTCTGCAA-GACTATCTAATGTGGGAAGTCCACTAGGACTATCTAA-G
23529858 TGTGG-AGTCTGTCAAGACTATCTAATG
1 -GTGGAAGTCTG-CAAGACTATCTAATG
23529885 CAAGAAGCCC
Statistics
Matches: 107, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
52 4 0.04
53 74 0.69
54 22 0.21
55 7 0.07
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (52 bp):
GTGGAAGTCTGCAAGACTATCTAATGTGGGAAGTCCACTAGGACTATCTAAG
Found at i:23531008 original size:27 final size:27
Alignment explanation
Indices: 23530978--23531137 Score: 248
Period size: 27 Copynumber: 5.9 Consensus size: 27
23530968 TTCATACTTC
**
23530978 GCCACAAAGGCTTTCATTTCGCGATTT
1 GCCACAAAGGCTTTCATTTCATGATTT
23531005 GCCACAAAGGCTTTCATTTCATGATTT
1 GCCACAAAGGCTTTCATTTCATGATTT
*
23531032 TCCACAAAGGCTTTCATTTCATGATTT
1 GCCACAAAGGCTTTCATTTCATGATTT
23531059 GCCACAAAGGCTTTCATTTCATGATTT
1 GCCACAAAGGCTTTCATTTCATGATTT
*
23531086 GCTACAAAGGCTTTCATTTCATGATTT
1 GCCACAAAGGCTTTCATTTCATGATTT
* * * *
23531113 TCCATAAAGGGTTTCATTTCCTGAT
1 GCCACAAAGGCTTTCATTTCATGAT
23531138 GAGTTTACGA
Statistics
Matches: 123, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (27 bp):
GCCACAAAGGCTTTCATTTCATGATTT
Found at i:23533963 original size:27 final size:27
Alignment explanation
Indices: 23533863--23534017 Score: 93
Period size: 27 Copynumber: 5.7 Consensus size: 27
23533853 GAAGTTCCCA
* * **
23533863 AGGACTATCTAATGTGGAAAG-TCAGCC
1 AGGACTATCTAATATGGGAAGTTCA-TT
* * * *
23533890 AGGACTATTTAATGTTGGAAGTCCATT
1 AGGACTATCTAATATGGGAAGTTCATT
** *
23533917 ATAACTAATCTAATGA-GGGAAGTTCGTT
1 AGGACT-ATCTAAT-ATGGGAAGTTCATT
*
23533945 AGGACTATCTAATATGGGAAGTCCATT
1 AGGACTATCTAATATGGGAAGTTCATT
* ** *
23533972 GGGACTATCTTTTAT--GAAGGTTCATA
1 AGGACTATCTAATATGGGAA-GTTCATT
*
23533998 AGCACTATCTAATATGGGAA
1 AGGACTATCTAATATGGGAA
23534018 AAGACTGTTA
Statistics
Matches: 95, Mismatches: 26, Indels: 13
0.71 0.19 0.10
Matches are distributed among these distances:
25 3 0.03
26 17 0.18
27 51 0.54
28 24 0.25
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.31
Consensus pattern (27 bp):
AGGACTATCTAATATGGGAAGTTCATT
Found at i:23537230 original size:41 final size:41
Alignment explanation
Indices: 23537185--23537346 Score: 236
Period size: 41 Copynumber: 4.0 Consensus size: 41
23537175 AAATTATTCA
*
23537185 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAATCG
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCG
* * * *
23537226 GACTATACGTCTAGCAGGCTAAATACCAGTGAATTGAATCG
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCG
23537267 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCAG
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATC-G
* * *
23537309 G-CTACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAAT
1 GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAAT
23537347 TAAACTATAA
Statistics
Matches: 110, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 108 0.98
42 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (41 bp):
GACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCG
Found at i:23537359 original size:41 final size:41
Alignment explanation
Indices: 23537182--23537381 Score: 231
Period size: 41 Copynumber: 4.9 Consensus size: 41
23537172 GTGAAATTAT
*
23537182 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAATTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * * *
23537223 TCGGACTATACGTCTAGCAGGCTAAATACCAGTGAATTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
*
23537264 TCGGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * *
23537305 TCAGGCTACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * * * * *
23537346 TTAAACTATAAGCCTATCAGG-TGAAGTGCCAGTGAA
1 TCAGACTATACGTCTAGCAGGCT-AAGTGCCGGTGAA
23537382 TCTGTTTAAA
Statistics
Matches: 139, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
40 1 0.01
41 138 0.99
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (41 bp):
TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
Found at i:23543176 original size:13 final size:13
Alignment explanation
Indices: 23543158--23543182 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23543148 ATTATTAATA
23543158 TTATTTTGTGTGT
1 TTATTTTGTGTGT
23543171 TTATTTTGTGTG
1 TTATTTTGTGTG
23543183 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:23550231 original size:68 final size:68
Alignment explanation
Indices: 23550122--23550264 Score: 277
Period size: 68 Copynumber: 2.1 Consensus size: 68
23550112 GGGACTTAGC
23550122 CTTCTTACAGGCAATGCATCGCACACAAAGCCATTCCACGTCTCACTTCATCTTCGGCCAAAAGA
1 CTTCTTACAGGCAATGCATCGCACACAAAGCCATTCCACGTCTCACTTCATCTTCGGCCAAAAGA
23550187 AGT
66 AGT
23550190 CTTCTTACAGGCAATGCATCGCACACAAAGCCATTCCACGTCTCACTTCATCTTCGGCCAAAAGA
1 CTTCTTACAGGCAATGCATCGCACACAAAGCCATTCCACGTCTCACTTCATCTTCGGCCAAAAGA
23550255 AGT
66 AGT
*
23550258 GTTCTTA
1 CTTCTTA
23550265 AAGCATGGCC
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 74 1.00
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (68 bp):
CTTCTTACAGGCAATGCATCGCACACAAAGCCATTCCACGTCTCACTTCATCTTCGGCCAAAAGA
AGT
Found at i:23552128 original size:18 final size:19
Alignment explanation
Indices: 23552094--23552137 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
23552084 TTCTAAACTC
23552094 TTTTC-TTTTTCTTTTTCT
1 TTTTCATTTTTCTTTTTCT
23552112 TTTTCATTTTTC-TTTTCT
1 TTTTCATTTTTCTTTTTCT
*
23552130 TGTTCATT
1 TTTTCATT
23552138 CACTCTCGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTCATTTTTCTTTTTCT
Found at i:23552130 original size:5 final size:6
Alignment explanation
Indices: 23552094--23552127 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
23552084 TTCTAAACTC
23552094 TTTTCT TTTTCT TTTTCT TTTTCAT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTC-T TTTTCT TTT
23552128 CTTGTTCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:23556995 original size:27 final size:27
Alignment explanation
Indices: 23556965--23557142 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
23556955 ATATTGAGTC
* * *
23556965 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
23556992 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
23557019 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** *** *
23557047 CGCACACTTAGTGCCGCATGGCCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
23557074 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
23557101 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
23557128 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23557143 GTACAATTTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:23557104 original size:82 final size:81
Alignment explanation
Indices: 23556991--23557141 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
23556981 TACAATCAAC
* *
23556991 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
23557056 AGTGCCGCATGGCCAAT
65 AGTGCCGCATGGCCAAT
* **
23557073 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
23557137 AGTGC
65 AGTGC
23557142 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGCCAAT
Found at i:23563913 original size:27 final size:27
Alignment explanation
Indices: 23563883--23564058 Score: 174
Period size: 27 Copynumber: 6.5 Consensus size: 27
23563873 ATTGAGTCCA
* * *
23563883 CACACTCAGTGCTATACAATCAACTCG
1 CACACTTAGTGCTACATAATCAACTCG
* *
23563910 CACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTACATAATCAACTCG
*
23563937 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATC-AACTCG
** ** *
23563965 CACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTACATAATCAACTCG
* **
23563992 CACACTTAGTGC-ATCATATTCATTTCG
1 CACACTTAGTGCTA-CATAATCAACTCG
* * *
23564019 CACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTACATAATCAACTCG
23564046 CACACTTAGTGCT
1 CACACTTAGTGCT
23564059 GTACAATTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CACACTTAGTGCTACATAATCAACTCG
Found at i:23563971 original size:55 final size:55
Alignment explanation
Indices: 23563883--23564058 Score: 207
Period size: 54 Copynumber: 3.2 Consensus size: 55
23563873 ATTGAGTCCA
* * * *
23563883 CACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCTACGTAATCAAATCG
1 CACACTTAGTGCTAT-CATAGTCAACTCGCACACTTAGTGCAACATAGTCAAATCG
** * *
23563937 CACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCG
1 CACACTTAGTGCTATCATAGTC-AACTCGCACACTTAGTGCAACATAGTCAAATCG
* **
23563992 CACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCG
1 CACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAATCG
23564046 CACACTTAGTGCT
1 CACACTTAGTGCT
23564059 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 55 0.53
55 45 0.44
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (55 bp):
CACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAATCG
Found at i:23564020 original size:82 final size:81
Alignment explanation
Indices: 23563902--23564057 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23563892 TGCTATACAA
* *
23563902 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23563967 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23563984 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23564048 CACTTAGTGC
65 CACTTAGTGC
23564058 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23574263 original size:27 final size:27
Alignment explanation
Indices: 23574204--23574289 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
23574194 CCAGCTAGCA
* * *
23574204 AAACCAACTGGCAAACCCCAGCTCACC
1 AAACCAACTAGCGAACCCCAGTTCACC
*
23574231 AGACCAACTAGCGAACCCCAGTTC-CC
1 AAACCAACTAGCGAACCCCAGTTCACC
* *
23574257 TAAACCAACTAGTGAACCCCTGTTCACC
1 -AAACCAACTAGCGAACCCCAGTTCACC
23574285 AAACC
1 AAACC
23574290 TGCTTGTGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 46 0.92
28 2 0.04
ACGTcount: A:0.35, C:0.41, G:0.12, T:0.13
Consensus pattern (27 bp):
AAACCAACTAGCGAACCCCAGTTCACC
Found at i:23574575 original size:22 final size:23
Alignment explanation
Indices: 23574532--23574575 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
23574522 TAATTATTTT
*
23574532 TTATATATTTTTTAAACTTATTA
1 TTATATATTTTTTAAACATATTA
23574555 TTATAT-TTTTTTGAAA-ATATT
1 TTATATATTTTTT-AAACATATT
23574576 TATGTATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (23 bp):
TTATATATTTTTTAAACATATTA
Found at i:23574578 original size:23 final size:22
Alignment explanation
Indices: 23574503--23574578 Score: 55
Period size: 23 Copynumber: 3.1 Consensus size: 22
23574493 AAATTTTATA
23574503 TATTATTATTTCTTTTCAATAATTATT
1 TATTA-TATTT-TTTT-AA-AA-TATT
* *
23574530 TTTTATATATTTTTTAAACT-TAT
1 TATTATAT-TTTTTTAAAATAT-T
23574553 TATTATATTTTTTTGAAAATATT
1 TATTATATTTTTTT-AAAATATT
23574576 TAT
1 TAT
23574579 GTATTTCTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
22 7 0.17
23 17 0.41
24 2 0.05
25 2 0.05
26 7 0.17
27 6 0.15
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (22 bp):
TATTATATTTTTTTAAAATATT
Found at i:23575741 original size:28 final size:30
Alignment explanation
Indices: 23575678--23575744 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 30
23575668 GTAATTATTT
*
23575678 TAAATTCTATGAATTTTTTATAATATTTTT
1 TAAATTCTATGAATTTTTTATAATATTTTA
*
23575708 TGAATT-T-TGAATTTTTT-TAAATATTTTA
1 TAAATTCTATGAATTTTTTAT-AATATTTTA
23575736 TAAATTCTA
1 TAAATTCTA
23575745 ATTTATTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 1 0.03
28 23 0.74
29 2 0.06
30 5 0.16
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.58
Consensus pattern (30 bp):
TAAATTCTATGAATTTTTTATAATATTTTA
Found at i:23589409 original size:24 final size:23
Alignment explanation
Indices: 23589371--23589415 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
23589361 TTAATGTTTT
*
23589371 AAAATTTAAAATTTCAATATTAA
1 AAAAATTAAAATTTCAATATTAA
23589394 AAAAATTAAAACTTTCAATATT
1 AAAAATTAAAA-TTTCAATATT
23589416 GGGATGAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAAATTAAAATTTCAATATTAA
Found at i:23591044 original size:139 final size:140
Alignment explanation
Indices: 23590738--23591114 Score: 499
Period size: 140 Copynumber: 2.7 Consensus size: 140
23590728 GTCCTAAGAC
* ** * * *
23590738 GACACTTTTGGG-CGACACTTTCCTAAATGTTGAAATAGACTTGCCAATATATGTTTTGGCCAAC
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACGCTTTGGCCAAC
* * *** ** *
23590802 TCTTTGTATAACGGTTTAGATATGCATGCCTAAGACAATGCTTAAATAAGAGTTGGCTTTGTCCG
66 TCTTTGTATAAGGGTTGAGATATGCATGCCTAAGACAACAATTAAATAAGAGTCAGCTTTGTCCA
*
23590867 ACACTATGGT
131 ACACTATGCT
* *
23590877 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTCGCCAAC
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACGCTTTGGCCAAC
* * * *
23590942 -CATTTGTATAAGGGTCGAGATATGCATGTCTAGGGCAACAATT-AATAAGAGTCAGCTTTGTCC
66 TC-TTTGTATAAGGGTTGAGATATGCATGCCTAAGACAACAATTAAATAAGAGTCAGCTTTGTCC
23591005 AACACTATGCT
130 AACACTATGCT
*
23591016 GACACTTTTGGGCCGACACTTTCTTAAGTGTTGGGATAGACTTGCCGATATACGCTTTGGCCAAC
1 GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACGCTTTGGCCAAC
* *
23591081 TCTTTTGTTTAAGGCTTGAGATATGCATGCCTAA
66 TC-TTTGTATAAGGGTTGAGATATGCATGCCTAA
23591115 TGTAACACCC
Statistics
Matches: 205, Mismatches: 30, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
139 102 0.50
140 103 0.50
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (140 bp):
GACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGATATACGCTTTGGCCAAC
TCTTTGTATAAGGGTTGAGATATGCATGCCTAAGACAACAATTAAATAAGAGTCAGCTTTGTCCA
ACACTATGCT
Found at i:23592406 original size:37 final size:37
Alignment explanation
Indices: 23592356--23592434 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23592346 TTATTACGAA
* * *
23592356 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
23592393 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
23592430 GTCTT
1 GTCTT
23592435 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:23592631 original size:47 final size:47
Alignment explanation
Indices: 23592553--23593032 Score: 744
Period size: 47 Copynumber: 10.1 Consensus size: 47
23592543 CCCTTCGGGA
* * * * * * *
23592553 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
23592600 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
23592647 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
*
23592696 CTTATCTCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
*
23592745 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
23592792 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
*
23592839 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
* *
23592886 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
23592933 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
* *
23592982 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
23593029 CTTA
1 CTTA
23593033 CTGTCATTTC
Statistics
Matches: 402, Mismatches: 27, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 262 0.65
49 140 0.35
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23592757 original size:96 final size:94
Alignment explanation
Indices: 23592553--23593032 Score: 753
Period size: 96 Copynumber: 5.0 Consensus size: 94
23592543 CCCTTCGGGA
* * * * * * * * *
23592553 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23592618 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
23592647 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA--TCACATATAT
23592712 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23592745 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23592810 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
23592839 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
23592904 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
23592933 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
23592998 ACTTTCACGTTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
23593029 CTTA
1 CTTA
23593033 CTGTCATTTC
Statistics
Matches: 362, Mismatches: 18, Indels: 10
0.93 0.05 0.03
Matches are distributed among these distances:
94 151 0.42
96 162 0.45
98 49 0.14
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:23596408 original size:40 final size:40
Alignment explanation
Indices: 23596351--23596507 Score: 215
Period size: 40 Copynumber: 3.9 Consensus size: 40
23596341 CGAATACACG
* * *
23596351 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
23596391 ACACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
23596431 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
23596471 TCACTAGCATAAATGCTCTTTGGGACTTAGCCCGGAT
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
23596508 TTAGTAACTC
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:23596543 original size:39 final size:39
Alignment explanation
Indices: 23596493--23596625 Score: 144
Period size: 40 Copynumber: 3.4 Consensus size: 39
23596483 ATGCTCTTTG
23596493 GGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTC
1 GGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTC
* * *
23596532 AGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC
1 -GGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTC
* * * * *
23596571 GGATCTTAGTCCGGATATAGTCACTTAGCA-CAAAGCCTTC
1 GGA-CTTAGCCCGGATTTAGTAAC-TCGCACCAATGCCTTC
23596611 GGGACTTAGCCCGGA
1 -GGACTTAGCCCGGA
23596626 CATCATTCGA
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
38 2 0.03
39 33 0.43
40 35 0.45
41 7 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
GGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTC
Found at i:23596972 original size:29 final size:29
Alignment explanation
Indices: 23596933--23597011 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
23596923 CTTAATAATC
*
23596933 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
23596963 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
23596992 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
23597012 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:23598847 original size:37 final size:37
Alignment explanation
Indices: 23598797--23598875 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23598787 TTATTACGAA
* * *
23598797 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
23598834 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
23598871 GTCTT
1 GTCTT
23598876 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:23599294 original size:143 final size:142
Alignment explanation
Indices: 23598994--23599758 Score: 1216
Period size: 143 Copynumber: 5.4 Consensus size: 142
23598984 CCCTTCGGGA
* * * * * * * * * *
23598994 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
23599059 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
23599122 TCGGCCATTAGGC
130 TCGGCCATTAGGC
* * *
23599135 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAT
1 CTTATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--GTATAT
*
23599200 ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCAT
61 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
23599265 CACATCGGCCATTAGGC
126 CACATCGGCCATTAGGC
*
23599282 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
23599347 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
23599412 TCGGCCATTAGGC
130 TCGGCCATTAGGC
* *
23599425 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
*
23599490 TTTCACATTCATCATATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
23599553 TCGGCCATTAGGC
130 TCGGCCATTAGGC
* *
23599566 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACAC
23599631 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
23599696 TCGGCCATTAGGC
130 TCGGCCATTAGGC
*
23599709 CTTATCACATATATACAC-TTCACGTTCATCACATCGGCCATTAGGCCTTA
1 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
23599759 CTATCATTTC
Statistics
Matches: 595, Mismatches: 21, Indels: 15
0.94 0.03 0.02
Matches are distributed among these distances:
141 147 0.25
142 32 0.05
143 280 0.47
145 91 0.15
147 45 0.08
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (142 bp):
CTTATCACAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:23599764 original size:49 final size:47
Alignment explanation
Indices: 23598994--23599758 Score: 1235
Period size: 47 Copynumber: 16.1 Consensus size: 47
23598984 CCCTTCGGGA
* * * * * *
23598994 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23599041 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23599088 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23599135 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23599184 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23599233 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23599282 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23599329 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23599376 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23599425 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23599472 CTTATCACGTATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23599519 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23599566 CTTATCACATATATATACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23599613 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23599660 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23599709 CTTATCACATATATACAC-TTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23599755 CTTA
1 CTTA
23599759 CTATCATTTC
Statistics
Matches: 679, Mismatches: 33, Indels: 13
0.94 0.05 0.02
Matches are distributed among these distances:
46 31 0.05
47 413 0.61
49 235 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23603575 original size:35 final size:35
Alignment explanation
Indices: 23603543--23604003 Score: 375
Period size: 35 Copynumber: 12.8 Consensus size: 35
23603533 CGTGTTTATT
* * * * *
23603543 CCAACCTTTTTAAGATTGTCTTAAACGAGTTTATT
1 CCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
* * * * *
23603578 CCAACCTTTTAAAGATTGCCTTAAATGGGTCTATC
1 CCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
* * *
23603613 CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTATATC
1 CCAACCTTTTT-AAGGTTGCCTTAGACGA-GTCTATC
* ** *
23603650 CCAAACTTTTTAAGGTTGTATTAGATG-GCTCTATC
1 CCAACCTTTTTAAGGTTGCCTTAGACGAG-TCTATC
* * *
23603685 TCAACCTTTTAAAGGTTGCCTTAGACGGGTCTATC
1 CCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
* *
23603720 CTAACCTTTTTTAAGGGTTGCCTTAGACAAGGTCTATC
1 CCAACC-TTTTTAA-GGTTGCCTTAGACGA-GTCTATC
23603758 CCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
1 CCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
* * *
23603793 CCAACCTTTTTTAAGGGTTGCCTTAAACAAGGTTTATC
1 CCAACC-TTTTTAA-GGTTGCCTTAGACGA-GTCTATC
* * * * *
23603831 CCAACCTTTTTCAGGTTTCCTTAAATGGGTCTATC
1 CCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
* * ** *
23603866 TCAACATATTTTAAAGGTTGTTTTAGATGAGGTCTATC
1 CCAACCT-TTTT-AAGGTTGCCTTAGACGA-GTCTATC
* *
23603904 CCAACCTTTTTAAGGTTGCCATAGACGACTCTATC
1 CCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
* * * * * *
23603939 TCGACCTTTTTTAGAGGTTTCCTTAGACAAGGTATATG
1 CCAACC-TTTTTA-AGGTTGCCTTAGACGA-GTCTATC
* *
23603977 CCAACCTTTTTAAAGTTGTCTTAGACG
1 CCAACCTTTTTAAGGTTGCCTTAGACG
23604004 GTTCTATATT
Statistics
Matches: 340, Mismatches: 70, Indels: 31
0.77 0.16 0.07
Matches are distributed among these distances:
34 1 0.00
35 109 0.32
36 97 0.29
37 89 0.26
38 44 0.13
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (35 bp):
CCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
Found at i:23603659 original size:37 final size:37
Alignment explanation
Indices: 23603543--23604066 Score: 349
Period size: 37 Copynumber: 14.5 Consensus size: 37
23603533 CGTGTTTATT
* * * * *
23603543 CCAACCTTTTT-AAGATTGTCTTAAACGA-GTTTATT
1 CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTCTATC
* * *
23603578 CCAACC-TTTTAAAGATTGCCTTA-A-ATGGGTCTATC
1 CCAACCTTTTTAAAGGTTGTCTTAGACA-AGGTCTATC
*
23603613 CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTATATC
1 CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTCTATC
* * *
23603650 CCAAACTTTTT-AAGGTTGTATTAG--ATGGCTCTATC
1 CCAACCTTTTTAAAGGTTGTCTTAGACAAGG-TCTATC
* * *
23603685 TCAACC-TTTTAAAGGTTGCCTTAGAC-GGGTCTATC
1 CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTCTATC
* * *
23603720 CTAACCTTTTTTAAGGGTTGCCTTAGACAAGGTCTATC
1 CCAACC-TTTTTAAAGGTTGTCTTAGACAAGGTCTATC
* *
23603758 CCAACCTTTTT-AAGGTTGCCTTAGACGA-GTCTATC
1 CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTCTATC
* * * *
23603793 CCAACCTTTTTTAAGGGTTGCCTTAAACAAGGTTTATC
1 CCAACC-TTTTTAAAGGTTGTCTTAGACAAGGTCTATC
* *
23603831 CCAACCTTTTT-CAGGTT-TCCTTA-A-ATGGGTCTATC
1 CCAACCTTTTTAAAGGTTGT-CTTAGACA-AGGTCTATC
* * * **
23603866 TCAACATATTTTAAAGGTTGTTTTAGATGAGGTCTATC
1 CCAACCT-TTTTAAAGGTTGTCTTAGACAAGGTCTATC
* * * *
23603904 CCAACCTTTTT-AAGGTTGCCATAGACGA-CTCTATC
1 CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTCTATC
* * * * *
23603939 TCGACCTTTTTTAGAGGTT-TCCTTAGACAAGGTATATG
1 CCAACC-TTTTTAAAGGTTGT-CTTAGACAAGGTCTATC
23603977 CCAACCTTTTTAAA-GTTGTCTTAGAC--GGTTCTAT-
1 CCAACCTTTTTAAAGGTTGTCTTAGACAAGG-TCTATC
*** * *
23604011 ATTACCATTTTTTAAAGGTTGCCTTAGAC-AGGTCTATT
1 CCAACC--TTTTTAAAGGTTGTCTTAGACAAGGTCTATC
*
23604049 TCAACCCTTTTTAAAGGT
1 CCAA-CCTTTTTAAAGGT
23604067 CGGTCTTGAC
Statistics
Matches: 387, Mismatches: 67, Indels: 68
0.74 0.13 0.13
Matches are distributed among these distances:
34 18 0.05
35 98 0.25
36 97 0.25
37 120 0.31
38 52 0.13
39 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (37 bp):
CCAACCTTTTTAAAGGTTGTCTTAGACAAGGTCTATC
Found at i:23603773 original size:73 final size:72
Alignment explanation
Indices: 23603605--23604062 Score: 415
Period size: 73 Copynumber: 6.3 Consensus size: 72
23603595 GCCTTAAATG
* * * * *
23603605 GGTCTATCCCAACCTTTTTAAAGGTTGTCTTAGACAAGGTATATCCCAAAC-TTTTTAA-GGTTG
1 GGTCTATCCCAACCTTTTT-AAGGTTGCCTTAGAC-GGGTCTAT-CTAACCTTTTTTAAGGGTTG
** *
23603668 TATTAG--AT
63 CCTTAGACAA
* *
23603676 GGCTCTATCTCAACCTTTTAAAGGTTGCCTTAGACGGGTCTATCCTAACCTTTTTTAAGGGTTGC
1 GG-TCTATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCTAT-CTAACCTTTTTTAAGGGTTGC
23603741 CTTAGACAA
64 CTTAGACAA
* *
23603750 GGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCCCAACCTTTTTTAAGGGTTGCC
1 GGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCTAT-CTAACCTTTTTTAAGGGTTGCC
*
23603815 TTAAACAA
65 TTAGACAA
* * * * * * * * **
23603823 GGTTTATCCCAACCTTTTTCAGGTTTCCTTAAATGGGTCTATCTCAACATATTTTAAAGGTTGTT
1 GGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCTATCT-AACCTTTTTTAAGGGTTGCC
**
23603888 TTAGATGA
65 TTAGACAA
* ** * *
23603896 GGTCTATCCCAACCTTTTTAAGGTTGCCATAGACGACTCTATCTCGACCTTTTTT-AGAGGTTTC
1 GGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCTATCT-AACCTTTTTTAAG-GGTTGC
23603960 CTTAGACAA
64 CTTAGACAA
* * * * * * * *
23603969 GGTATATGCCAACCTTTTTAAAGTTGTCTTAGACGGTTCTATATTACCATTTTTTAAAGGTTGCC
1 GGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCTATCTAACC-TTTTTTAAGGGTTGCC
23604034 TTAGAC-A
65 TTAGACAA
**
23604041 GGTCTATTTCAACCCTTTTTAA
1 GGTCTATCCCAA-CCTTTTTAA
23604063 AGGTCGGTCT
Statistics
Matches: 316, Mismatches: 61, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
70 11 0.03
71 23 0.07
72 39 0.12
73 239 0.76
74 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (72 bp):
GGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTCTATCTAACCTTTTTTAAGGGTTGCCT
TAGACAA
Found at i:23603878 original size:146 final size:144
Alignment explanation
Indices: 23603584--23604062 Score: 466
Period size: 146 Copynumber: 3.3 Consensus size: 144
23603574 TATTCCAACC
* * ** * * *
23603584 TTTTAAAGATTGCCTTAAATGGGTCTATCCCAACCTTTTTAAAGGTTGTCTTAGACAAGGTATAT
1 TTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTT-AAGGTTGCCTTAGACGA-GTCTAT
* ** * * * * * *
23603649 CCCAAAC-TTTTTAA-GGTTGTATT-AGATGGCTCTATCTCAACCTTTTAAAGGTTGCCTTAGAC
64 CCCAACCTTTTTTAAGGGTTGCCTTAACAAGG-TATATCCCAACCTTTTTAAGGTTTCCTTAGAC
*
23603711 GGGTCTATC-CTAACCTT
128 GGGTCTATCTC-AACATT
*
23603728 TTTTAAGGGTTGCCTTAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
1 TTTTAAAGGTTGCCTTAGAC-AGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
* * * *
23603793 CCAACCTTTTTTAAGGGTTGCCTTAAACAAGGTTTATCCCAACCTTTTTCAGGTTTCCTTAAATG
65 CCAACCTTTTTTAAGGGTTGCCTT-AACAAGGTATATCCCAACCTTTTTAAGGTTTCCTTAGACG
*
23603858 GGTCTATCTCAACATA
129 GGTCTATCTCAACATT
** * * *
23603874 TTTTAAAGGTTGTTTTAGATGAGGTCTATCCCAACCTTTTTAAGGTTGCCATAGACGACTCTATC
1 TTTTAAAGGTTGCCTTAGA-CAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATC
* * * * *
23603939 TCGACCTTTTTT-AGAGGTTTCCTTAGACAAGGTATATGCCAACCTTTTTAAAGTTGT-CTTAGA
65 CCAACCTTTTTTAAG-GGTTGCCTTA-ACAAGGTATATCCCAACCTTTTTAAGGTT-TCCTTAGA
* * * *
23604002 CGGTTCTATATTACCATT
127 CGGGTCTATCTCAACATT
**
23604020 TTTTAAAGGTTGCCTTAGACAGGTCTATTTCAACCCTTTTTAA
1 TTTTAAAGGTTGCCTTAGACAGGTCTATCCCAA-CCTTTTTAA
23604063 AGGTCGGTCT
Statistics
Matches: 277, Mismatches: 47, Indels: 20
0.81 0.14 0.06
Matches are distributed among these distances:
143 11 0.04
144 38 0.14
145 40 0.14
146 182 0.66
147 6 0.02
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (144 bp):
TTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGAGTCTATCC
CAACCTTTTTTAAGGGTTGCCTTAACAAGGTATATCCCAACCTTTTTAAGGTTTCCTTAGACGGG
TCTATCTCAACATT
Found at i:23606924 original size:20 final size:17
Alignment explanation
Indices: 23606899--23606937 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 17
23606889 ACCATGTATT
23606899 AAATTAAATAACATAAATGA
1 AAATTAAA-AA-AT-AATGA
23606919 AAATTAAAAAATAATGA
1 AAATTAAAAAATAATGA
23606936 AA
1 AA
23606938 TAAAACTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 2 0.11
19 2 0.11
20 8 0.42
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (17 bp):
AAATTAAAAAATAATGA
Found at i:23607359 original size:131 final size:131
Alignment explanation
Indices: 23607117--23607378 Score: 443
Period size: 131 Copynumber: 2.0 Consensus size: 131
23607107 ATACACATAA
* * *
23607117 CAACATAGCATATGTTGTATTCCACCGTGTACAATAATCTAAAATCAACCTCTTATTTGGCAATT
1 CAACATAGCATATGTTGCATTCCACCGTGTACAACAATCTAAAATCAACCTCTTATTTGGCAACT
* *
23607182 GAAGTTGTTTAACAATATCACTGAACATAGTCAAAGGCACAATGGATACTGTGATGTACTTCACA
66 GAAGTTGTTTAACAATATCACTAAACATAGTCAAAAGCACAATGGATACTGTGATGTACTTCACA
23607247 C
131 C
23607248 CAACATAGCATATGTTGCATTCCACCGTGTACAACAATCTAAAATCAACCTCTTATTTGGCAACT
1 CAACATAGCATATGTTGCATTCCACCGTGTACAACAATCTAAAATCAACCTCTTATTTGGCAACT
* * * *
23607313 GAAGTTGTTTGACAATATCACTAAACATAGTCAAAAGCATAGTGGATGCTGTGATGTACTTCACA
66 GAAGTTGTTTAACAATATCACTAAACATAGTCAAAAGCACAATGGATACTGTGATGTACTTCACA
23607378 C
131 C
23607379 TTTCCCTTAC
Statistics
Matches: 122, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 122 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.30
Consensus pattern (131 bp):
CAACATAGCATATGTTGCATTCCACCGTGTACAACAATCTAAAATCAACCTCTTATTTGGCAACT
GAAGTTGTTTAACAATATCACTAAACATAGTCAAAAGCACAATGGATACTGTGATGTACTTCACA
C
Found at i:23619584 original size:39 final size:39
Alignment explanation
Indices: 23619489--23619750 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
23619479 TTGAATGATG
*
23619489 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* * *
23619527 ATCCGGACTAAGATCCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
23619568 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
23619607 TTCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
23619646 TTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
23619685 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
23619724 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
23619751 AACAAGGAGC
Statistics
Matches: 198, Mismatches: 18, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
39 129 0.65
40 58 0.29
41 10 0.05
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:23627572 original size:38 final size:38
Alignment explanation
Indices: 23627484--23627720 Score: 296
Period size: 38 Copynumber: 6.3 Consensus size: 38
23627474 GGACTAAGAT
23627484 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AG-
1 CCGAAGGCATTTGTGCGAGATACTAATT-CGGGCTAAGC
23627521 CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGC
23627559 CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGC
23627597 CCGAAGGCATTTGTGCGAG-T--T-ATTC-GGCTAAG-
1 CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGC
* * *
23627629 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGG-TTAGTC
1 CCGAAGGCATTTGTGCGAGATACT-AATTCGGGCTAAG-C
** *
23627668 CCGAAGGCATTTGTGCGA-ATTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTA-ATTCGGGCTAAG-C
23627708 CCGAAGGCATTTG
1 CCGAAGGCATTTG
23627721 AACGAGGAGC
Statistics
Matches: 181, Mismatches: 6, Indels: 23
0.86 0.03 0.11
Matches are distributed among these distances:
32 19 0.10
33 8 0.04
34 4 0.02
35 2 0.01
36 6 0.03
37 37 0.20
38 60 0.33
39 28 0.15
40 17 0.09
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGC
Found at i:23642331 original size:39 final size:39
Alignment explanation
Indices: 23642288--23642536 Score: 376
Period size: 39 Copynumber: 6.3 Consensus size: 39
23642278 GGACTAAGAT
23642288 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
*
23642327 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
*
23642366 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
23642405 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * * *
23642444 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
23642484 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
23642524 CCGAAGGCATTTG
1 CCGAAGGCATTTG
23642537 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 150 0.76
40 47 0.24
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:23642457 original size:117 final size:119
Alignment explanation
Indices: 23642236--23642536 Score: 391
Period size: 117 Copynumber: 2.6 Consensus size: 119
23642226 TTGAATGATG
* * * * * *
23642236 TCCGGGCTAAGTCCTGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
23642298 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* **
23642354 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-ATTTCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
23642415 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
23642471 TCCGGGTTATGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
23642536 G
66 G
23642537 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
117 82 0.52
118 54 0.34
119 22 0.14
120 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:23656704 original size:335 final size:335
Alignment explanation
Indices: 23656094--23656774 Score: 1227
Period size: 335 Copynumber: 2.0 Consensus size: 335
23656084 AGTAAATTAG
*
23656094 CACCCAAATCATGCTTAAATCGAAACCCGTCAAATATAAAATTTCAGTCCAAATATTAATCCATA
1 CACCCAAATCATGCTTAAATCGAAACCAGTCAAATATAAAATTTCAGTCCAAATATTAATCCATA
* * * * * *
23656159 TTAGTTCAAAGTTATATGCTCAACCATGTATCAAAAATTGTAAATAATCATGACATATAATCATC
66 ATAGGTCAAACTCATATGCTCAACCATGTACCAAAAATCGTAAATAATCATGACATATAATCATC
23656224 AATTTAGCATATAACATTTCATACATATATATTGGCATATACAATCATGGCTTAATCGAGTGACC
131 AATTTAGCATATAACATTTCATACATATATATTGGCATATACAATCATGGCTTAATCGAGTGACC
* * *
23656289 ATACATCGAATAAACGGATCTGCTTGCTCCCAATCAAAATTAGAATTAGTCTCAGATTAAGCTAC
196 ATACATCGAATAAACAGATCTGCTTACTCCCAATCAAAATCAGAATTAGTCTCAGATTAAGCTAC
23656354 CCGAGGCCACACGCTCCCTTATATTGCCTCAAATCAATCCCGTTGAGTGGAGACACAAGCTCAAC
261 CCGAGGCCACACGCTCCCTTATATTGCCTCAAATCAATCCCGTTGAGTGGAGACACAAGCTCAAC
23656419 ACTCCTTTAT
326 ACTCCTTTAT
*
23656429 CACCCAAATCATGCTTAAATCGAAACCATTCAAATATAAAATTTCAGTCCAAATATTAATCCATA
1 CACCCAAATCATGCTTAAATCGAAACCAGTCAAATATAAAATTTCAGTCCAAATATTAATCCATA
*
23656494 ATAGGTCAAACTCATATGCTCAACCATGTACCAAAACTCGTAAATAATCATGACATATAATCATC
66 ATAGGTCAAACTCATATGCTCAACCATGTACCAAAAATCGTAAATAATCATGACATATAATCATC
23656559 AATTTAGCATATAACATTTCATACATATATATTGGCATATACAATCATGGCTTAATCGAGTGACC
131 AATTTAGCATATAACATTTCATACATATATATTGGCATATACAATCATGGCTTAATCGAGTGACC
*
23656624 ATACATCGAATAAACAGATCTGCTTACTCCCAATCAAAATCAGAATTAGTCTCGGATTAAGCTAC
196 ATACATCGAATAAACAGATCTGCTTACTCCCAATCAAAATCAGAATTAGTCTCAGATTAAGCTAC
23656689 CCGAGGCCACACGCTCCCTTATATTGCCTCAAATCAATCCCGTTGAGTGGAGACACAAGCTCAAC
261 CCGAGGCCACACGCTCCCTTATATTGCCTCAAATCAATCCCGTTGAGTGGAGACACAAGCTCAAC
23656754 ACTCCTTTAT
326 ACTCCTTTAT
23656764 CTACTCCAAAT
1 C-AC-CCAAAT
23656775 TAGTCCACCT
Statistics
Matches: 331, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
335 323 0.98
336 2 0.01
337 6 0.02
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (335 bp):
CACCCAAATCATGCTTAAATCGAAACCAGTCAAATATAAAATTTCAGTCCAAATATTAATCCATA
ATAGGTCAAACTCATATGCTCAACCATGTACCAAAAATCGTAAATAATCATGACATATAATCATC
AATTTAGCATATAACATTTCATACATATATATTGGCATATACAATCATGGCTTAATCGAGTGACC
ATACATCGAATAAACAGATCTGCTTACTCCCAATCAAAATCAGAATTAGTCTCAGATTAAGCTAC
CCGAGGCCACACGCTCCCTTATATTGCCTCAAATCAATCCCGTTGAGTGGAGACACAAGCTCAAC
ACTCCTTTAT
Found at i:23662484 original size:13 final size:13
Alignment explanation
Indices: 23662466--23662490 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23662456 AGTCTATTAT
23662466 TTCTGTATCTGTA
1 TTCTGTATCTGTA
23662479 TTCTGTATCTGT
1 TTCTGTATCTGT
23662491 GTTTGGGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.56
Consensus pattern (13 bp):
TTCTGTATCTGTA
Found at i:23663915 original size:42 final size:42
Alignment explanation
Indices: 23663868--23663950 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
23663858 AATATGTGTG
*
23663868 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
1 AAACGTTTGAAATTCAAACATTTGAACTCTTATTCTTATCCA
23663910 AAACGTTTGAAATTCAAACATTTGAACTCTTATTCTTATCC
1 AAACGTTTGAAATTCAAACATTTGAACTCTTATTCTTATCC
23663951 CTTTGAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (42 bp):
AAACGTTTGAAATTCAAACATTTGAACTCTTATTCTTATCCA
Found at i:23672074 original size:40 final size:39
Alignment explanation
Indices: 23672037--23672207 Score: 209
Period size: 39 Copynumber: 4.3 Consensus size: 39
23672027 GGACTAAGAT
23672037 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGC
* *
23672076 CCGAAGGCATTTGTGCAAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGC
* * * *
23672115 CCAAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAG-C
* * * * *
23672155 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAT-TCTGGGCTAAG-C
23672195 CCGAAGGCATTTG
1 CCGAAGGCATTTG
23672208 AACGAGTAGC
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 70 0.61
40 44 0.39
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGC
Found at i:23672179 original size:79 final size:79
Alignment explanation
Indices: 23671987--23672207 Score: 227
Period size: 79 Copynumber: 2.8 Consensus size: 79
23671977 AATGATGTCC
* * * * *
23671987 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATATCCGGACTAAGAT-CCGAAGGCATTT
1 GGGCTAAG-CCCGAAGGCAATTGTGC-AAGAT-ACTATAACCGGGCTAAG-TCCCAAAGGCATTT
*
23672049 GTGCGAGATACTAATTCT
62 GTGCGAGATACTAAATCT
* *
23672067 GGGCTAAGCCCGAAGGCATTTGTGCAAGATACTA-ATTCCGGGCTAAG-CCCAAAGGCATTTGTG
1 GGGCTAAGCCCGAAGGCAATTGTGCAAGATACTATA-ACCGGGCTAAGTCCCAAAGGCATTTGTG
*
23672130 CGAGTTACTAAATCT
65 CGAGATACTAAATCT
* * * * *
23672145 GGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAG-CCCGAAGGCAATTGTGCAAGATACTATAACCGGGCTAAGTCCCAAAGGCATTTG
23672208 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 12, Indels: 14
0.82 0.08 0.09
Matches are distributed among these distances:
78 35 0.29
79 57 0.47
80 30 0.25
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
GGGCTAAGCCCGAAGGCAATTGTGCAAGATACTATAACCGGGCTAAGTCCCAAAGGCATTTGTGC
GAGATACTAAATCT
Found at i:23672214 original size:40 final size:40
Alignment explanation
Indices: 23671984--23672207 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
23671974 TTGAATGATG
* * * *
23671984 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
23672024 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
23672064 TCTGGGCTAAG-CCCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23672103 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
23672142 TCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
23672183 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23672208 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 69 0.44
40 77 0.49
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23672229 original size:79 final size:79
Alignment explanation
Indices: 23672040--23672240 Score: 185
Period size: 79 Copynumber: 2.6 Consensus size: 79
23672030 CTAAGATCCG
** * * * * * *
23672040 AAGGCATTTGTGCGAGATACTAATTCTGGGCTAAG-CCCGAAGGCATTTGTGCAAGATACTAATT
1 AAGGCATTTGAACGAGTTACTAAATCTCGGTTAAGTCCCGAAGGCAATTGTGCAAGATACTAATA
23672104 CCGGGCTAAGCCCA
66 CCGGGCTAAGCCCA
** * * *
23672118 AAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATA
1 AAGGCATTTGAACGAGTTACTAAATCTCGGTTAAGTCCCGAAGGCAATTGTGCAAGATACTAAT-
* *
23672182 ACCGGGCTATGTCCCG
65 ACCGGGCTAAG-CCCA
* * *
23672198 AAGGCATTTGAACGAG-TAGCTATATC-CGGTTAAATTCCGAAGG
1 AAGGCATTTGAACGAGTTA-CTAAATCTCGGTTAAGTCCCGAAGG
23672241 TACGTGATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
78 34 0.33
79 47 0.45
80 23 0.22
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGAACGAGTTACTAAATCTCGGTTAAGTCCCGAAGGCAATTGTGCAAGATACTAATA
CCGGGCTAAGCCCA
Found at i:23673815 original size:42 final size:42
Alignment explanation
Indices: 23673768--23673850 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
23673758 AATATGTGTG
23673768 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
1 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
23673810 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC
1 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC
23673851 CTTTGAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.39
Consensus pattern (42 bp):
AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
Found at i:23701003 original size:27 final size:27
Alignment explanation
Indices: 23700972--23701149 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
23700962 TAAATTGTAC
23700972 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23700999 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23701025 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23701053 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
23701081 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23701108 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23701135 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23701150 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23701086 original size:82 final size:81
Alignment explanation
Indices: 23700973--23701128 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
23700963 AAATTGTACA
*
23700973 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
23701037 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23701054 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
23701119 TGCGAGTTGA
65 TGCGAATTGA
23701129 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23701140 original size:82 final size:81
Alignment explanation
Indices: 23700969--23701149 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
23700959 GATTAAATTG
*
23700969 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
23701034 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23701050 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
23701114 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23701132 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23701150 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23708259 original size:27 final size:27
Alignment explanation
Indices: 23708228--23708405 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
23708218 TAAATTGTAC
23708228 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23708255 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23708281 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23708309 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
23708337 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23708364 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23708391 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23708406 GACTCGATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23708342 original size:82 final size:81
Alignment explanation
Indices: 23708229--23708384 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
23708219 AAATTGTACA
*
23708229 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
23708293 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23708310 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
23708375 TGCGAGTTGA
65 TGCGAATTGA
23708385 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23708396 original size:82 final size:81
Alignment explanation
Indices: 23708225--23708405 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
23708215 GATTAAATTG
*
23708225 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
23708290 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23708306 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
23708370 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23708388 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23708406 GACTCGATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23709417 original size:23 final size:22
Alignment explanation
Indices: 23709366--23709428 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 22
23709356 CCTCTTCTTT
*
23709366 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
23709388 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
23709411 TTCTTTTCAATTTCTTTT
1 TTCTTTTC--TTTCTTTT
23709429 CTGTTTCACA
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
21 2 0.06
22 5 0.15
23 15 0.44
24 11 0.32
25 1 0.03
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:23709424 original size:29 final size:29
Alignment explanation
Indices: 23709392--23709448 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
23709382 TCTAACTCAT
*
23709392 TTTCTCTTCTTTCTTCA-ACTTCTTTTCAA
1 TTTCTCTTCTGT-TTCACACTTCTTTTCAA
* *
23709421 TTTCTTTTCTGTTTCACATTTCTTTTCA
1 TTTCTCTTCTGTTTCACACTTCTTTTCA
23709449 CTCTCAATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.12, C:0.25, G:0.02, T:0.61
Consensus pattern (29 bp):
TTTCTCTTCTGTTTCACACTTCTTTTCAA
Found at i:23709443 original size:18 final size:16
Alignment explanation
Indices: 23709411--23709447 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
23709401 TTTCTTCAAC
23709411 TTCTTTTCAATTTCTT
1 TTCTTTTCAATTTCTT
23709427 TTCTGTTTCACATTTCTT
1 TTCT-TTTCA-ATTTCTT
23709445 TTC
1 TTC
23709448 ACTCTCAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 5 0.26
18 10 0.53
ACGTcount: A:0.11, C:0.22, G:0.03, T:0.65
Consensus pattern (16 bp):
TTCTTTTCAATTTCTT
Found at i:23713231 original size:6 final size:6
Alignment explanation
Indices: 23713222--23713249 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
23713212 CATTACCATT
23713222 CCATAG CCATAG CCATAG CCATAG CCAT
1 CCATAG CCATAG CCATAG CCATAG CCAT
23713250 TGACATAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.14, T:0.18
Consensus pattern (6 bp):
CCATAG
Found at i:23713256 original size:18 final size:18
Alignment explanation
Indices: 23713222--23713256 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23713212 CATTACCATT
*
23713222 CCATAGCCATAGCCATAG
1 CCATAGCCATAGACATAG
*
23713240 CCATAGCCATTGACATA
1 CCATAGCCATAGACATA
23713257 AATTATGACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.31, G:0.14, T:0.20
Consensus pattern (18 bp):
CCATAGCCATAGACATAG
Found at i:23719319 original size:38 final size:37
Alignment explanation
Indices: 23719249--23719321 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 37
23719239 CTTTCATAAT
*
23719249 TTCACTTTTTCACTTTCAATCACAATTCAATTCAAAA
1 TTCACTTTTCCACTTTCAATCACAATTCAATTCAAAA
23719286 TTCACTTTTCCA-TTTCTAAGTCA-ATATTCAATTCAA
1 TTCACTTTTCCACTTTC-AA-TCACA-ATTCAATTCAA
23719322 TTCCACACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 4 0.12
37 14 0.44
38 14 0.44
ACGTcount: A:0.33, C:0.23, G:0.01, T:0.42
Consensus pattern (37 bp):
TTCACTTTTCCACTTTCAATCACAATTCAATTCAAAA
Found at i:23719352 original size:23 final size:22
Alignment explanation
Indices: 23719309--23719352 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
23719299 TTCTAAGTCA
23719309 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
23719332 ATATTCACTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
23719353 TCAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.36
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:23719463 original size:45 final size:45
Alignment explanation
Indices: 23719396--23719490 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
23719386 TAACAGATAC
* * *
23719396 CCGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGT
1 CCGGTGGAATCAGCACAAAGCAACCACCTTACTAATCAATGATGT
23719441 CCGGTGGAATCAGCACAAAGCAACCACCTTACTAATCAATGATGT
1 CCGGTGGAATCAGCACAAAGCAACCACCTTACTAATCAATGATGT
*
23719486 TCGGT
1 CCGGT
23719491 TCACATAGTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (45 bp):
CCGGTGGAATCAGCACAAAGCAACCACCTTACTAATCAATGATGT
Found at i:23719556 original size:51 final size:51
Alignment explanation
Indices: 23719495--23719625 Score: 176
Period size: 51 Copynumber: 2.6 Consensus size: 51
23719485 TTCGGTTCAC
23719495 ATAGTAGCCTGCACATAGTACTACACATGTGA-C-AATTACCATCCGATACAT
1 ATAGTAGCCTGCACATAGTACTACACATGTGATCGAA--ACCATCCGATACAT
* * * * *
23719546 GTAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCGGTACGT
1 ATAGTAGCCTGCACATAGTACTACACATGTGATCGAAACCATCCGATACAT
*
23719597 ATAGTAACCTGCACATAGTACTACACATG
1 ATAGTAGCCTGCACATAGTACTACACATG
23719626 CGACCTATCA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
51 67 0.96
52 1 0.01
53 2 0.03
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (51 bp):
ATAGTAGCCTGCACATAGTACTACACATGTGATCGAAACCATCCGATACAT
Found at i:23724732 original size:212 final size:212
Alignment explanation
Indices: 23724354--23724776 Score: 729
Period size: 212 Copynumber: 2.0 Consensus size: 212
23724344 GTCATGAAAA
* *
23724354 GCAACTATAGTGAGCAAGATCCTGATGGATTTAAACATAGCTACAGGAGAAAAGGTTTCATCATA
1 GCAACTATAGCGAGCAAGATCCTGATGGATTTAAACATAGCTACAGGAGAAAAAGTTTCATCATA
* * *
23724419 GTCAACACCATGAGCTTGGTGAAAACCTTTAGCGACTAATCGCCCCTTGTATGTTTATACATTAC
66 GTCAACACCATGAACTTGGCGAAAACCTTTAACGACTAATCGCCCCTTGTATGTTTATACATTAC
23724484 CATCCACACCGGTTTTCTTTTTGAAAACCCACTTGCACCCTATGGGTTTAACCCCTTCGGGTGGG
131 CATCCACACCGGTTTTCTTTTTGAAAACCCACTTGCACCCTATGGGTTTAACCCCTTCGGGTGGG
23724549 TCAACCAAAGTCCATAT
196 TCAACCAAAGTCCATAT
*
23724566 GCAATTATAGCGAGCAAGATCCTGATGGATTTAAACATAGCTACAGGAGAAAAAGTTTCATCATA
1 GCAACTATAGCGAGCAAGATCCTGATGGATTTAAACATAGCTACAGGAGAAAAAGTTTCATCATA
* *
23724631 GTCAACACCATGAACTTGGCGAAAACCTTTAATGACTAATCGCCCCTTGTATGTTTGTACATTAC
66 GTCAACACCATGAACTTGGCGAAAACCTTTAACGACTAATCGCCCCTTGTATGTTTATACATTAC
** * * *
23724696 CATCCATGCCGGTTTTTTTTTTGAAAACCCACTTGCACCCTTTGGGTTTAACCCCTTCGGTTGGG
131 CATCCACACCGGTTTTCTTTTTGAAAACCCACTTGCACCCTATGGGTTTAACCCCTTCGGGTGGG
23724761 TCAACCAAAGTCCATA
196 TCAACCAAAGTCCATA
23724777 CTTGGTTTTC
Statistics
Matches: 198, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
212 198 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (212 bp):
GCAACTATAGCGAGCAAGATCCTGATGGATTTAAACATAGCTACAGGAGAAAAAGTTTCATCATA
GTCAACACCATGAACTTGGCGAAAACCTTTAACGACTAATCGCCCCTTGTATGTTTATACATTAC
CATCCACACCGGTTTTCTTTTTGAAAACCCACTTGCACCCTATGGGTTTAACCCCTTCGGGTGGG
TCAACCAAAGTCCATAT
Found at i:23732006 original size:22 final size:23
Alignment explanation
Indices: 23731966--23732011 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
23731956 TCAAAGGCGG
23731966 AGGAAAATTAATTTTTATATTTT
1 AGGAAAATTAATTTTTATATTTT
*
23731989 AGGAAAGTTAA-TTTTATATTTT
1 AGGAAAATTAATTTTTATATTTT
23732011 A
1 A
23732012 TATTTTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (23 bp):
AGGAAAATTAATTTTTATATTTT
Found at i:23733043 original size:17 final size:17
Alignment explanation
Indices: 23733021--23733054 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
23733011 TAATTGAATT
23733021 TTAGATT-TGAATTTCAA
1 TTAGATTCT-AATTTCAA
23733038 TTAGATTCTAATTTCAA
1 TTAGATTCTAATTTCAA
23733055 AAAACATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.94
18 1 0.06
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (17 bp):
TTAGATTCTAATTTCAA
Found at i:23734496 original size:23 final size:23
Alignment explanation
Indices: 23734444--23734489 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
23734434 TCTTGTTATT
23734444 AAATTGAATTGATTGTGACTATC
1 AAATTGAATTGATTGTGACTATC
23734467 AAATTGAATTGATTGTGACTATC
1 AAATTGAATTGATTGTGACTATC
23734490 TTTTTGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (23 bp):
AAATTGAATTGATTGTGACTATC
Found at i:23737785 original size:38 final size:38
Alignment explanation
Indices: 23737725--23738058 Score: 180
Period size: 38 Copynumber: 8.7 Consensus size: 38
23737715 AACTTTCAAT
*
23737725 ACACCGGCAC-AAGCCTACTAGGCACAAAGCCTGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACAAAGCCTGAATA
*
23737762 ACACCGGCACAAAGCCTGCTAGGCACAGAA--CTCAAATA
1 ACACCGGCACAAAGCCTGCTAGGCACA-AAGCCT-GAATA
* * * * **
23737800 ACACCGGGACAAAGTCTGCTAGGCACAGACCCCAAATA
1 ACACCGGCACAAAGCCTGCTAGGCACAAAGCCTGAATA
* * ** *
23737838 GCACCGACACAAAGCCTAAATAACACTGGCACAAAGCCTG-CTA
1 ACACCGGCACAAAGCCT-GCT---A--GGCACAAAGCCTGAATA
** * * * * *
23737881 GACATAGAGCCCGAATAACAT-C--GGCACAAAACCAGAATA
1 -ACACCG-GCAC-AA-AGCCTGCTAGGCACAAAGCCTGAATA
* * * * * *
23737920 ACATCGACACAAATCCTGCTAGTCACAGAGTCTGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACAAAGCCTGAATA
* * * *
23737958 ACACCGGCACAAAGCCTACTAGGCATAGAGACTGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACAAAGCCTGAATA
* * *
23737996 ACACCGGTACAAAGCCTCCTAGGCACAGAG-CTCGAATA
1 ACACCGGCACAAAGCCTGCTAGGCACAAAGCCT-GAATA
* *
23738034 ACACCGGCACGAAGCTTGCTAGGCA
1 ACACCGGCACAAAGCCTGCTAGGCA
23738059 ATAACATTAT
Statistics
Matches: 225, Mismatches: 52, Indels: 39
0.71 0.16 0.12
Matches are distributed among these distances:
35 3 0.01
36 3 0.01
37 17 0.08
38 174 0.77
39 6 0.03
42 1 0.00
43 2 0.01
44 12 0.05
45 2 0.01
46 2 0.01
47 3 0.01
ACGTcount: A:0.38, C:0.30, G:0.19, T:0.13
Consensus pattern (38 bp):
ACACCGGCACAAAGCCTGCTAGGCACAAAGCCTGAATA
Found at i:23737858 original size:22 final size:22
Alignment explanation
Indices: 23737833--23737876 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
23737823 CACAGACCCC
*
23737833 AAATAGCACCGACACAAAGCCT
1 AAATAACACCGACACAAAGCCT
* *
23737855 AAATAACACTGGCACAAAGCCT
1 AAATAACACCGACACAAAGCCT
23737877 GCTAGACATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.30, G:0.14, T:0.11
Consensus pattern (22 bp):
AAATAACACCGACACAAAGCCT
Found at i:23737909 original size:60 final size:60
Alignment explanation
Indices: 23737795--23737975 Score: 186
Period size: 60 Copynumber: 3.0 Consensus size: 60
23737785 CACAGAACTC
* * * * * * * *
23737795 AAATAACACCGGGACAAAGTCTGCTAGGCACAGACCCCAAATAGCACCGACACAAAGCCT
1 AAATAACACTGGCACAAAGCCTGCTAGACACAGAGCCCGAATAACACCGGCACAAAGCCT
* * *
23737855 AAATAACACTGGCACAAAGCCTGCTAGACATAGAGCCCGAATAACATCGGCACAAAACC-
1 AAATAACACTGGCACAAAGCCTGCTAGACACAGAGCCCGAATAACACCGGCACAAAGCCT
* * * * *
23737914 AGAATAACA-TCGACACAAATCCTGCTAGTCACAGAGTCTGAATAACACCGGCACAAAGCCT
1 A-AATAACACT-GGCACAAAGCCTGCTAGACACAGAGCCCGAATAACACCGGCACAAAGCCT
23737975 A
1 A
23737976 CTAGGCATAG
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
59 2 0.02
60 96 0.97
61 1 0.01
ACGTcount: A:0.41, C:0.29, G:0.17, T:0.13
Consensus pattern (60 bp):
AAATAACACTGGCACAAAGCCTGCTAGACACAGAGCCCGAATAACACCGGCACAAAGCCT
Found at i:23742496 original size:39 final size:40
Alignment explanation
Indices: 23742395--23742579 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
23742385 TTGAATGATG
* *
23742395 TCCGGGCTAAGTCCCGAAGGC-TTTGTG-GTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTAAT
* *
23742434 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
23742475 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
23742514 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
23742553 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
23742580 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 9 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:23742531 original size:79 final size:80
Alignment explanation
Indices: 23742395--23742579 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 80
23742385 TTGAATGATG
* *
23742395 TCCGGGCTAAGTCCCGAAGGC-TTTGTGGTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGG-AAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
23742459 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * **
23742474 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTG-GAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
23742536 ATTGTGCGAGTTACTATA
63 ATTGTGCGAGATACTATA
* *
23742554 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23742580 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.35
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGGAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:23742601 original size:79 final size:79
Alignment explanation
Indices: 23742448--23742612 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
23742438 GGACTAAGAT
* * **
23742448 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
23742513 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
23742527 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
23742590 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
23742606 CCGAAGG
1 CCGAAGG
23742613 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:23750426 original size:39 final size:40
Alignment explanation
Indices: 23750325--23750509 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
23750315 TTGAATGATG
* *
23750325 TCCGGGCTAAGTCCCGAAGGC-TTTGTG-GTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTAAT
* *
23750364 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
23750405 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
23750444 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
23750483 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
23750510 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 9 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:23750461 original size:79 final size:80
Alignment explanation
Indices: 23750325--23750509 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 80
23750315 TTGAATGATG
* *
23750325 TCCGGGCTAAGTCCCGAAGGC-TTTGTGGTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGG-AAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
23750389 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * **
23750404 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTG-GAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
23750466 ATTGTGCGAGTTACTATA
63 ATTGTGCGAGATACTATA
* *
23750484 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23750510 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.35
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGGAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:23750531 original size:79 final size:79
Alignment explanation
Indices: 23750378--23750542 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
23750368 GGACTAAGAT
* * **
23750378 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
23750443 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
23750457 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
23750520 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
23750536 CCGAAGG
1 CCGAAGG
23750543 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:23781597 original size:22 final size:22
Alignment explanation
Indices: 23781572--23781639 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 22
23781562 CTAGGCATAG
* *
23781572 AGCCCGACTAGCACTGGCACAA
1 AGCCTGACTAACACTGGCACAA
*
23781594 AGCCTGACTAACACCGGCACAA
1 AGCCTGACTAACACTGGCACAA
* *
23781616 AGACTGAATAACACTGGCACAA
1 AGCCTGACTAACACTGGCACAA
23781638 AG
1 AG
23781640 ACTGCTAGGC
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.38, C:0.31, G:0.21, T:0.10
Consensus pattern (22 bp):
AGCCTGACTAACACTGGCACAA
Found at i:23781597 original size:38 final size:38
Alignment explanation
Indices: 23781483--23781667 Score: 174
Period size: 38 Copynumber: 4.7 Consensus size: 38
23781473 CGGTACAAGA
* *
23781483 CTGCTAGGCACAAAGCCTGAATAACACTGGCACAAAGC
1 CTGCTAGGCATAGAGCCTGAATAACACTGGCACAAAGC
* * * *
23781521 ATGCTAGGCATAGAACCTAAATAACACTGGCATAAAGC
1 CTGCTAGGCATAGAGCCTGAATAACACTGGCACAAAGC
* * *
23781559 CTGCTAGGCATAGAGCCCGACTAGCACTGGCACAAAGC
1 CTGCTAGGCATAGAGCCTGAATAACACTGGCACAAAGC
* * * *
23781597 CTGACTAACACCGGCACAAAGACTGAATAACACTGGCACAAAGA
1 CTG-CT---A--GGCATAGAGCCTGAATAACACTGGCACAAAGC
*
23781641 CTGCTAGGCACAGAGCCCT-AATAACAC
1 CTGCTAGGCATAGAG-CCTGAATAACAC
23781668 CGACAGGAAG
Statistics
Matches: 118, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
38 82 0.69
39 4 0.03
40 1 0.01
42 1 0.01
43 2 0.02
44 28 0.24
ACGTcount: A:0.37, C:0.28, G:0.21, T:0.14
Consensus pattern (38 bp):
CTGCTAGGCATAGAGCCTGAATAACACTGGCACAAAGC
Found at i:23781640 original size:22 final size:22
Alignment explanation
Indices: 23781583--23781643 Score: 95
Period size: 22 Copynumber: 2.8 Consensus size: 22
23781573 GCCCGACTAG
* *
23781583 CACTGGCACAAAGCCTGACTAA
1 CACTGGCACAAAGACTGAATAA
*
23781605 CACCGGCACAAAGACTGAATAA
1 CACTGGCACAAAGACTGAATAA
23781627 CACTGGCACAAAGACTG
1 CACTGGCACAAAGACTG
23781644 CTAGGCACAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.39, C:0.30, G:0.20, T:0.11
Consensus pattern (22 bp):
CACTGGCACAAAGACTGAATAA
Found at i:23781727 original size:38 final size:38
Alignment explanation
Indices: 23781685--23781834 Score: 183
Period size: 38 Copynumber: 3.9 Consensus size: 38
23781675 AAGGCTGTTA
* * * *
23781685 GGCACAATGCCTGCTAGGCATAGAGTCTGAATAACACC
1 GGCACAAAGCCTACTAGGCACAGAGCCTGAATAACACC
23781723 GGCACAAAGCCTACTAGGCACAGAGCCTGAATAACACC
1 GGCACAAAGCCTACTAGGCACAGAGCCTGAATAACACC
*** ** *
23781761 AATACAAAGCCTGTTAGGCACAGAGCCCGAATAACACC
1 GGCACAAAGCCTACTAGGCACAGAGCCTGAATAACACC
** *
23781799 GGCATGAAGCCTACTAGGCACAAAGCCTGAATAACA
1 GGCACAAAGCCTACTAGGCACAGAGCCTGAATAACA
23781835 TTATGCTTCT
Statistics
Matches: 93, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 93 1.00
ACGTcount: A:0.37, C:0.28, G:0.21, T:0.14
Consensus pattern (38 bp):
GGCACAAAGCCTACTAGGCACAGAGCCTGAATAACACC
Found at i:23781798 original size:76 final size:76
Alignment explanation
Indices: 23781688--23781834 Score: 222
Period size: 76 Copynumber: 1.9 Consensus size: 76
23781678 GCTGTTAGGC
* * * * *
23781688 ACAATGCCTGCTAGGCATAGAGTCTGAATAACACCGGCACAAAGCCTACTAGGCACAGAGCCTGA
1 ACAAAGCCTGCTAGGCACAGAGCCCGAATAACACCGGCACAAAGCCTACTAGGCACAAAGCCTGA
23781753 ATAACACCAAT
66 ATAACACCAAT
* **
23781764 ACAAAGCCTGTTAGGCACAGAGCCCGAATAACACCGGCATGAAGCCTACTAGGCACAAAGCCTGA
1 ACAAAGCCTGCTAGGCACAGAGCCCGAATAACACCGGCACAAAGCCTACTAGGCACAAAGCCTGA
23781829 ATAACA
66 ATAACA
23781835 TTATGCTTCT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
76 63 1.00
ACGTcount: A:0.37, C:0.28, G:0.20, T:0.14
Consensus pattern (76 bp):
ACAAAGCCTGCTAGGCACAGAGCCCGAATAACACCGGCACAAAGCCTACTAGGCACAAAGCCTGA
ATAACACCAAT
Found at i:23785296 original size:23 final size:23
Alignment explanation
Indices: 23785267--23785507 Score: 302
Period size: 23 Copynumber: 10.5 Consensus size: 23
23785257 CTACCATGTT
* * *
23785267 TTGGACATCTTTTATACATTAAA
1 TTGGACAACATTTATACATCAAA
* *
23785290 TTAGACAACATTTATACACCAAA
1 TTGGACAACATTTATACATCAAA
*
23785313 TTGGACAACATTTACACATCAAA
1 TTGGACAACATTTATACATCAAA
*
23785336 TTGGACAACATTTATACAACAAA
1 TTGGACAACATTTATACATCAAA
* *
23785359 TTGGACAGCATTTATACACCAAA
1 TTGGACAACATTTATACATCAAA
* ** *
23785382 TTAGACAGTATTTATACAGCAAA
1 TTGGACAACATTTATACATCAAA
*
23785405 TTGGACAACATTTATACATCAAT
1 TTGGACAACATTTATACATCAAA
* *
23785428 TTGGACAGCATTTATACAGCAAA
1 TTGGACAACATTTATACATCAAA
* * *
23785451 TTGGACAGCATTTATACACCGAA
1 TTGGACAACATTTATACATCAAA
*
23785474 TTGGACAGCATTTATACATCAAA
1 TTGGACAACATTTATACATCAAA
23785497 TTGGACAACAT
1 TTGGACAACAT
23785508 CAATCAGTCA
Statistics
Matches: 190, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 190 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (23 bp):
TTGGACAACATTTATACATCAAA
Found at i:23786287 original size:40 final size:40
Alignment explanation
Indices: 23786191--23786405 Score: 238
Period size: 40 Copynumber: 5.3 Consensus size: 40
23786181 ATTATAATCC
* * * * *
23786191 CACATACTAAGTGCCTTATATAGCCGAAGCTA-TCTCATTTT
1 CACACACTAAGTGCCATAAATAGCCGAAGCTATTCCCA--AT
* * *
23786232 CGCACACTAAGTGCCATACATATCCGAAGCTATTCCCAAT
1 CACACACTAAGTGCCATAAATAGCCGAAGCTATTCCCAAT
* *
23786272 CAAACACTAAGTGCCATAAATAGCCGAAGCTA-TCTCGAAT
1 CACACACTAAGTGCCATAAATAGCCGAAGCTATTC-CCAAT
* * *
23786312 CACATACTAAGTGCCATACATAGCCGAAGTTATTCCCAAT
1 CACACACTAAGTGCCATAAATAGCCGAAGCTATTCCCAAT
*
23786352 CACACACTAAGTGCCATAAATAGCCGAAGCTA-TCTCGAAT
1 CACACACTAAGTGCCATAAATAGCCGAAGCTATTC-CCAAT
*
23786392 CACATACTAAGTGC
1 CACACACTAAGTGC
23786406 TAAACACAGG
Statistics
Matches: 148, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.03
40 111 0.75
41 29 0.20
42 4 0.03
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.24
Consensus pattern (40 bp):
CACACACTAAGTGCCATAAATAGCCGAAGCTATTCCCAAT
Found at i:23786346 original size:80 final size:80
Alignment explanation
Indices: 23786196--23786405 Score: 323
Period size: 80 Copynumber: 2.6 Consensus size: 80
23786186 AATCCCACAT
* * * * * *
23786196 ACTAAGTGCCTTATATAGCCGAAGCTATCTC-ATTTTCGCACACTAAGTGCCATACATATCCGAA
1 ACTAAGTGCCATAAATAGCCGAAGCTATCTCGA--ATCACATACTAAGTGCCATACATAGCCGAA
23786260 GCTATTCCCAATCAAAC
64 GCTATTCCCAATCAAAC
*
23786277 ACTAAGTGCCATAAATAGCCGAAGCTATCTCGAATCACATACTAAGTGCCATACATAGCCGAAGT
1 ACTAAGTGCCATAAATAGCCGAAGCTATCTCGAATCACATACTAAGTGCCATACATAGCCGAAGC
*
23786342 TATTCCCAATCACAC
66 TATTCCCAATCAAAC
23786357 ACTAAGTGCCATAAATAGCCGAAGCTATCTCGAATCACATACTAAGTGC
1 ACTAAGTGCCATAAATAGCCGAAGCTATCTCGAATCACATACTAAGTGC
23786406 TAAACACAGG
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
80 90 0.75
81 29 0.24
82 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (80 bp):
ACTAAGTGCCATAAATAGCCGAAGCTATCTCGAATCACATACTAAGTGCCATACATAGCCGAAGC
TATTCCCAATCAAAC
Found at i:23793401 original size:20 final size:20
Alignment explanation
Indices: 23793376--23793414 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
23793366 TACTTTCTTC
23793376 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
23793396 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
23793415 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Done.