Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 84 of 214
Found at i:23799309 original size:12 final size:12
Alignment explanation
Indices: 23799292--23799328 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
23799282 TTGTCACATG
23799292 TATTAAATTAAT
1 TATTAAATTAAT
23799304 TATTAAATTAAT
1 TATTAAATTAAT
*
23799316 TATTGAATTAAT
1 TATTAAATTAAT
23799328 T
1 T
23799329 TAATTGGGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (12 bp):
TATTAAATTAAT
Found at i:23811436 original size:23 final size:23
Alignment explanation
Indices: 23811407--23811578 Score: 245
Period size: 23 Copynumber: 7.5 Consensus size: 23
23811397 CTACCCTGTT
* * *
23811407 TTGGACAGCTTTTATACATCAAT
1 TTGGACAGCATTTATACACCAAA
* * *
23811430 TTGGACAACATTAATACATCAAA
1 TTGGACAGCATTTATACACCAAA
*
23811453 TTGGATAGCATTTATACACCAAA
1 TTGGACAGCATTTATACACCAAA
*
23811476 TTGGACAGCATTTATACAGCAAA
1 TTGGACAGCATTTATACACCAAA
23811499 TTGGACAGCATTTATACACCAAA
1 TTGGACAGCATTTATACACCAAA
* *
23811522 GTGGACAACATTTATACACCAAA
1 TTGGACAGCATTTATACACCAAA
*
23811545 TTGGACAGCATTTATACATCAAA
1 TTGGACAGCATTTATACACCAAA
23811568 TTGGACAGCAT
1 TTGGACAGCAT
23811579 CAATTAGTCA
Statistics
Matches: 133, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 133 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (23 bp):
TTGGACAGCATTTATACACCAAA
Found at i:23812352 original size:40 final size:40
Alignment explanation
Indices: 23812261--23812395 Score: 146
Period size: 40 Copynumber: 3.4 Consensus size: 40
23812251 ATTATGATCC
* * * * * **
23812261 CACACGCTAAGTGCCTTACATAACTGAAGCTATCTCAGTTT
1 CACACACTAAGTGCCATAAATAGCCGAAGCTATCTC-GAAT
* * *
23812302 CGCACACTAAGTGCCATATATAGCCGAAGTTATTCTC-AAT
1 CACACACTAAGTGCCATAAATAGCCGAAGCTA-TCTCGAAT
23812342 CACACACTAAGTGCCATAAATAGCCGAAGCTATCTCGAAT
1 CACACACTAAGTGCCATAAATAGCCGAAGCTATCTCGAAT
*
23812382 CACATACTAAGTGC
1 CACACACTAAGTGC
23812396 TAAACATAGT
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
39 4 0.05
40 46 0.58
41 25 0.32
42 4 0.05
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (40 bp):
CACACACTAAGTGCCATAAATAGCCGAAGCTATCTCGAAT
Found at i:23813978 original size:29 final size:31
Alignment explanation
Indices: 23813955--23814012 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
23813945 GTAAATACTC
* *
23813955 AAAA-TTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGATCAATAGTGTAAATATGA
23813984 AAAATTTGAAGGATCAATAGTGTAAATAT
1 AAAATTTGAAGGATCAATAGTGTAAATAT
23814013 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 4 0.16
30 10 0.40
31 11 0.44
ACGTcount: A:0.48, C:0.02, G:0.21, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGATCAATAGTGTAAATATGA
Found at i:23815601 original size:16 final size:16
Alignment explanation
Indices: 23815580--23815611 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
23815570 ATAAAATGAA
23815580 TGAAATATTAATTTAT
1 TGAAATATTAATTTAT
23815596 TGAAATATTAATTTAT
1 TGAAATATTAATTTAT
23815612 ATCAAGATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (16 bp):
TGAAATATTAATTTAT
Found at i:23816597 original size:15 final size:15
Alignment explanation
Indices: 23816577--23816623 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
23816567 AAAGGCTATT
*
23816577 TTTAAAAGAAGATAG
1 TTTAAAAAAAGATAG
23816592 TTTAAAACAAAG--AG
1 TTTAAAA-AAAGATAG
23816606 TTTAAAGAAAAGATAG
1 TTTAAA-AAAAGATAG
23816622 TT
1 TT
23816624 GATGGATTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
14 12 0.44
15 8 0.30
16 7 0.26
ACGTcount: A:0.53, C:0.02, G:0.17, T:0.28
Consensus pattern (15 bp):
TTTAAAAAAAGATAG
Found at i:23821506 original size:12 final size:12
Alignment explanation
Indices: 23821489--23821520 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
23821479 TGGCTCGCCC
23821489 ATATTAATTTTT
1 ATATTAATTTTT
23821501 ATATT-ATTTTT
1 ATATTAATTTTT
23821512 ATA-TAATTT
1 ATATTAATTT
23821521 AAAAAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:23825055 original size:4 final size:4
Alignment explanation
Indices: 23825046--23825072 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
23825036 TTGTTATCAT
23825046 TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT
23825073 TTACTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:23827547 original size:50 final size:49
Alignment explanation
Indices: 23827430--23827622 Score: 162
Period size: 50 Copynumber: 3.9 Consensus size: 49
23827420 AAATTTGGGG
* *
23827430 AATGAG-A-TCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACTGA
1 AATGAGAACTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAC-GA
* ** * *
23827478 GATGAGAGGTGCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 AATGAGAACT-CCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGA
* * * * *
23827528 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGGAATTGGTA-GTA
1 AATGAGAACTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-A
* * * *
23827577 AAGGA-AACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 AATGAGAAC-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
23827623 TGTTATTATC
Statistics
Matches: 114, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
48 9 0.08
49 37 0.32
50 64 0.56
51 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (49 bp):
AATGAGAACTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGA
Found at i:23829472 original size:10 final size:10
Alignment explanation
Indices: 23829450--23829479 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
23829440 ACTCAATACA
23829450 AATAATA-AT
1 AATAATATAT
23829459 AATAATATAT
1 AATAATATAT
23829469 AATAATATAT
1 AATAATATAT
23829479 A
1 A
23829480 TGTAAAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.35
10 13 0.65
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
AATAATATAT
Found at i:23830821 original size:143 final size:143
Alignment explanation
Indices: 23830562--23831255 Score: 840
Period size: 143 Copynumber: 4.9 Consensus size: 143
23830552 TGCCTTCAGC
* * * * *
23830562 TTTAATTTGTTCCACTGCAACACCGGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCACTGCAA
1 TTTAATCTGTTTCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAA
* * * * *
23830627 CTTCAGGGAGATAAAGCT-AGTGGCTTCAATCTATTTCACTACAACTTTAGGAAGATAAGAT-TC
66 CTTCAGGGAGATAAGGCTGA-TGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCT-
* **
23830690 GCCATAACTCGTAGA
129 GCCATAATTTATAGA
* *
23830705 TTTAATCTGTTTCACTGCAACGCCAGGGAAATCAGATTCGCTATCTTCAGTCTGCTCCGCTGCAA
1 TTTAATCTGTTTCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAA
23830770 CTTCAGGGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTGT-AGGAAGATAAGATCTG
66 CTTCAGGGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACT-TCAGGAAGATAAGATCTG
23830834 CCATAATTTATAGA
130 CCATAATTTATAGA
* * * * *
23830848 TTTAATTTGTTTCATTGCAACGCCAGGGAAATAAGATTCGCTGTTTTTAGTCTGCTTCGCTGCAA
1 TTTAATCTGTTTCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAA
* * * **
23830913 CTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCT-CACTGCAACTTCAGGAAGATAAGATCCAC
66 CTTCAGGGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCTGC
* *
23830977 CATAATTTGTAGC
131 CATAATTTATAGA
** * *
23830990 TTTAATCTG-TTCTACTATAACGCCAGGGAAATAAGATTCGTTGTCTTCAGTCTGCTCCACTGCA
1 TTTAATCTGTTTC-ACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCA
* * *
23831054 ACTTCAGAGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTG
65 ACTTCAGGGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCTG
*
23831119 CCATAATTTATAGC
130 CCATAATTTATAGA
* * * * * * * *
23831133 TTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCACTATCTTTAGTTTGCTCTGCTACAA
1 TTTAATCTGTTTCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAA
* * * *** * * *
23831198 CTTCAGGGGGATAAGACTTGCTTTTTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
66 CTTCAGGGAGATAAGGC-TGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATA
23831256 GGATTGGTTT
Statistics
Matches: 480, Mismatches: 63, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
141 4 0.01
142 121 0.25
143 316 0.66
144 39 0.08
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (143 bp):
TTTAATCTGTTTCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAA
CTTCAGGGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCTGC
CATAATTTATAGA
Found at i:23831073 original size:285 final size:285
Alignment explanation
Indices: 23830562--23831255 Score: 917
Period size: 285 Copynumber: 2.4 Consensus size: 285
23830552 TGCCTTCAGC
* * * * *
23830562 TTTAATTTGTTCCACTGCAACACCGGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCACTGCAA
1 TTTAATTTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTTCGCTGCAA
* * ** * * * *
23830627 CTTCAGGGAGATAAAGCTAGTGGCTTCAATCTATTTCACTACAACTTTAGGAAGATAAGATTCGC
66 CTTCAGGGAGATAAGGCTGGTGGCTTCAATCT-GCTCACTGCAACTTCAGGAAGATAAGATCCAC
* *
23830692 CATAACTCGTAGATTTAATCTGTTTCACTGCAACGCCAGGGAAATCAGATTCGCTATCTTCAGTC
130 CATAACTCGTAGATTTAATCTGTTTCACTACAACGCCAGGGAAATAAGATTCGCTATCTTCAGTC
* *
23830757 TGCTCCGCTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTGT-AGG
195 TGCTCCACTGCAACTTCAGAGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACT-TCAGG
23830821 AAGATAAGATCTGCCATAATTTATAGA
259 AAGATAAGATCTGCCATAATTTATAGA
* * *
23830848 TTTAATTTGTTTCATTGCAACGCCAGGGAAATAAGATTCGCTGTTTTTAGTCTGCTTCGCTGCAA
1 TTTAATTTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTTCGCTGCAA
*
23830913 CTTTAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCACTGCAACTTCAGGAAGATAAGATCCACC
66 CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCACTGCAACTTCAGGAAGATAAGATCCACC
* * * * * *
23830978 ATAATTTGTAGCTTTAATCTG-TTCTACTATAACGCCAGGGAAATAAGATTCGTTGTCTTCAGTC
131 ATAACTCGTAGATTTAATCTGTTTC-ACTACAACGCCAGGGAAATAAGATTCGCTATCTTCAGTC
* *
23831042 TGCTCCACTGCAACTTCAGAGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGA
195 TGCTCCACTGCAACTTCAGAGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTTCAGGA
*
23831107 AGATAAGATCTGCCATAATTTATAGC
260 AGATAAGATCTGCCATAATTTATAGA
* * * * * *
23831133 TTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCACTATCTTTAGTTTGC-TCTGCTACA
1 TTTAATTTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTTC-GCTGCA
* * * *** * *
23831197 ACTTCAGGGGGATAAGACTTGCTTTTTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
65 ACTTCAGGGAGATAAGGC-TGGTGGCTTCAATCTGCT-CACTGCAACTTCAGGAAGATA
23831256 GGATTGGTTT
Statistics
Matches: 355, Mismatches: 48, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
284 6 0.02
285 230 0.65
286 99 0.28
287 20 0.06
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (285 bp):
TTTAATTTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTTAGTCTGCTTCGCTGCAA
CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCACTGCAACTTCAGGAAGATAAGATCCACC
ATAACTCGTAGATTTAATCTGTTTCACTACAACGCCAGGGAAATAAGATTCGCTATCTTCAGTCT
GCTCCACTGCAACTTCAGAGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAA
GATAAGATCTGCCATAATTTATAGA
Found at i:23831286 original size:44 final size:45
Alignment explanation
Indices: 23831195--23831609 Score: 223
Period size: 44 Copynumber: 9.3 Consensus size: 45
23831185 TGCTCTGCTA
* * * *
23831195 CAACTTCAGGGGGATAAGACTTGCTTTTTTCAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTGGTTTCTTCAATCTGCTCCACTG
* *
23831240 CAACTTCAGGGAGATAGGA-TTGGTTTCTTCAATCTGCTCCAGTG
1 CAACTTCAGGGAGATAAGACTTGGTTTCTTCAATCTGCTCCACTG
** * ***
23831284 CAACTTCTA-GGAGATAAGACTT-GTAACTTTAATCCATTCCACTG
1 CAACTTC-AGGGAGATAAGACTTGGTTTCTTCAATCTGCTCCACTG
* * * * *
23831328 CAACTTCAAGGAGATAGGATTATTGG-TT-TT-AA--T-CTACACTA
1 CAACTTCAGGGAGATAAGA--CTTGGTTTCTTCAATCTGCTCCACTG
** * * * *
23831369 CAACTTCAGGGAGATAAGA-TT--TGCCAT-GATCTACTCTACTG
1 CAACTTCAGGGAGATAAGACTTGGTTTCTTCAATCTGCTCCACTG
* ** * * *
23831410 CAAATTCAAAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCCACTG
1 CAACTTCAGGGAGATAAGA-CT-TG-GTT-T--CTTCAATCTGCTCCACTG
** * * * *
23831461 CAACTTCAGGGAGATAAGACTT-GTCACTTTAATCCGCTCTACTA
1 CAACTTCAGGGAGATAAGACTTGGTTTCTTCAATCTGCTCCACTG
* * * *
23831505 CAACTTCAGGGAGATAGGA-TT-ATTGGCTTTAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTGGTT-TCTTCAATCTGCTCCACTG
* * * * *
23831549 TAACTTCAGGGGGATAAGACTTGCTTTTCTTCAGTTTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTG-GTTTCTTCAATCTGCTCCACTG
23831595 CAACTTCAGGGAGAT
1 CAACTTCAGGGAGAT
23831610 GAGATTCGCC
Statistics
Matches: 277, Mismatches: 68, Indels: 49
0.70 0.17 0.12
Matches are distributed among these distances:
38 4 0.01
40 1 0.00
41 43 0.16
43 5 0.02
44 134 0.48
45 24 0.09
46 30 0.11
47 5 0.02
49 1 0.00
50 4 0.01
51 26 0.09
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (45 bp):
CAACTTCAGGGAGATAAGACTTGGTTTCTTCAATCTGCTCCACTG
Found at i:23832925 original size:47 final size:48
Alignment explanation
Indices: 23832853--23832953 Score: 150
Period size: 47 Copynumber: 2.1 Consensus size: 48
23832843 ATTTTTTACC
* * *
23832853 TTTTTTTTTGAAACTCAAAGTGCCCTTTGCGGGTTTTCACCTTGGTTT
1 TTTTTTTTTGAAACTCAAAGCGCCCTTTGCGGGTTTTCACCTTAGTCT
* *
23832901 TTTTTTTTTG-GACTCAAGGCGCCCTTTGCGGGTTTTCACCTTAGTCT
1 TTTTTTTTTGAAACTCAAAGCGCCCTTTGCGGGTTTTCACCTTAGTCT
23832948 TTTTTT
1 TTTTTT
23832954 ATGCAAAGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 38 0.79
48 10 0.21
ACGTcount: A:0.12, C:0.20, G:0.19, T:0.50
Consensus pattern (48 bp):
TTTTTTTTTGAAACTCAAAGCGCCCTTTGCGGGTTTTCACCTTAGTCT
Found at i:23833923 original size:12 final size:12
Alignment explanation
Indices: 23833908--23833949 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
23833898 TTATTTTCAT
23833908 TTTTTTGAAATA
1 TTTTTTGAAATA
* *
23833920 TTTTCT--AATT
1 TTTTTTGAAATA
23833930 TTTTTTGAAATA
1 TTTTTTGAAATA
23833942 TTTTTTGA
1 TTTTTTGA
23833950 CTGGATCTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
10 8 0.33
12 16 0.67
ACGTcount: A:0.26, C:0.02, G:0.07, T:0.64
Consensus pattern (12 bp):
TTTTTTGAAATA
Found at i:23833930 original size:21 final size:20
Alignment explanation
Indices: 23833899--23833945 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
23833889 TCATCATTTT
23833899 TATTTTCA-TTTTTTTGAAA
1 TATTTTCATTTTTTTTGAAA
23833918 TATTTTCTAATTTTTTTTGAAA
1 TATTTTC--ATTTTTTTTGAAA
23833940 TATTTT
1 TATTTT
23833946 TTGACTGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.28
21 1 0.04
22 17 0.68
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (20 bp):
TATTTTCATTTTTTTTGAAA
Found at i:23836937 original size:40 final size:40
Alignment explanation
Indices: 23836883--23837196 Score: 520
Period size: 40 Copynumber: 7.8 Consensus size: 40
23836873 ATTACCACAA
* ** *
23836883 GCACAATTGCCTTCGGGTCTTAGCCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
23836923 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
23836963 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
23837003 GCACAAATGCCTGCGGGTCTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
23837043 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
23837083 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
23837123 GCACAAATGTCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
23837163 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
23837197 ATACAAATGC
Statistics
Matches: 256, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 256 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:23845415 original size:40 final size:40
Alignment explanation
Indices: 23845361--23845672 Score: 502
Period size: 40 Copynumber: 7.8 Consensus size: 40
23845351 ATTACCACAA
* ** *
23845361 GCACAATTGCCTTCGGGTCTTAGCCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
23845401 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
23845441 GCACAATTGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
23845481 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
23845521 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
23845561 GCAC-AATG-CTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
23845599 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
23845639 GCACAAATGCCTTCGGGTCTTAGCCCGTATATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAT
23845673 ATACAAATGC
Statistics
Matches: 253, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
38 33 0.13
39 8 0.03
40 212 0.84
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:23845628 original size:118 final size:120
Alignment explanation
Indices: 23845361--23845672 Score: 520
Period size: 118 Copynumber: 2.6 Consensus size: 120
23845351 ATTACCACAA
* * ** * *
23845361 GCACAATTGCCTTCGGGTCTTAGCCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
23845426 CGGATATATCAACTTGCACAATTGCCTTCGGGTTTTAGCCCGGATATATCAACTC
66 CGGATATATCAACTCGCACAATTGCCTGCGGGTCTTAGCCCGGATATATCAACTC
23845481 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
23845546 CGGATATATCAACTCGCACAA-TG-CTGCGGGTCTTAGCCCGGATATATCAACTC
66 CGGATATATCAACTCGCACAATTGCCTGCGGGTCTTAGCCCGGATATATCAACTC
23845599 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
23845664 CGTATATAT
66 CGGATATAT
23845673 ATACAAATGC
Statistics
Matches: 182, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
118 101 0.55
119 2 0.01
120 79 0.43
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.25
Consensus pattern (120 bp):
GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTCGCACAATTGCCTGCGGGTCTTAGCCCGGATATATCAACTC
Found at i:23851273 original size:10 final size:10
Alignment explanation
Indices: 23851249--23851280 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
23851239 CTCAATACAA
23851249 ATAATAATA-
1 ATAATAATAT
23851258 ATAATAATAT
1 ATAATAATAT
23851268 ATAATAATAT
1 ATAATAATAT
23851278 ATA
1 ATA
23851281 TGTAAAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATAATAATAT
Found at i:23851602 original size:21 final size:24
Alignment explanation
Indices: 23851578--23851631 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 24
23851568 AATATATATA
23851578 TAAAATAATAGAT-TAT-G-AAA-T
1 TAAAATAATA-ATATATGGAAAACT
23851599 T-AAATAATAATATATGGAAAACT
1 TAAAATAATAATATATGGAAAACT
23851622 TAAAATAATA
1 TAAAATAATA
23851632 TTAAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
19 2 0.07
20 11 0.39
21 2 0.07
22 3 0.11
23 2 0.07
24 8 0.29
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.31
Consensus pattern (24 bp):
TAAAATAATAATATATGGAAAACT
Found at i:23851614 original size:20 final size:20
Alignment explanation
Indices: 23851558--23851614 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
23851548 ATTATACTAG
*
23851558 ATTAACATAA-AATATAT-AT
1 ATTAA-ATAATAATATATGAA
*
23851577 ATAAAATAATAGAT-TATGAA
1 ATTAAATAATA-ATATATGAA
23851597 ATTAAATAATAATATATG
1 ATTAAATAATAATATATG
23851615 GAAAACTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 4 0.13
19 10 0.32
20 17 0.55
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (20 bp):
ATTAAATAATAATATATGAA
Found at i:23852826 original size:12 final size:12
Alignment explanation
Indices: 23852811--23852858 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
23852801 TTATATAATA
23852811 TTTTTTATTTGG
1 TTTTTTATTTGG
*
23852823 TTTTTTAATT--
1 TTTTTTATTTGG
*
23852833 TTTTTGATTTGG
1 TTTTTTATTTGG
*
23852845 TTTATTATTTGG
1 TTTTTTATTTGG
23852857 TT
1 TT
23852859 GTGGGCCCGG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
10 8 0.28
12 21 0.72
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (12 bp):
TTTTTTATTTGG
Found at i:23852831 original size:22 final size:22
Alignment explanation
Indices: 23852806--23852847 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
23852796 GACTTTTATA
23852806 TAATATTTTTT-ATTTGGTTTTT
1 TAAT-TTTTTTGATTTGGTTTTT
23852828 TAATTTTTTTGATTTGGTTT
1 TAATTTTTTTGATTTGGTTT
23852848 ATTATTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.00, G:0.12, T:0.71
Consensus pattern (22 bp):
TAATTTTTTTGATTTGGTTTTT
Found at i:23855898 original size:2 final size:2
Alignment explanation
Indices: 23855891--23855941 Score: 84
Period size: 2 Copynumber: 25.5 Consensus size: 2
23855881 ATGATGGAAA
* *
23855891 AG AG AG AG AG AG AT AG AG AG AG AG AG AG AG AG AG AG AG TG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
23855933 AG AG AG AG A
1 AG AG AG AG A
23855942 TCATAGTGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.47, T:0.04
Consensus pattern (2 bp):
AG
Found at i:23859794 original size:5 final size:6
Alignment explanation
Indices: 23859779--23859803 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23859769 ACAGTTTATT
23859779 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
23859804 TGGTTTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:23863367 original size:51 final size:51
Alignment explanation
Indices: 23863291--23863473 Score: 217
Period size: 51 Copynumber: 3.6 Consensus size: 51
23863281 GATGAACACG
23863291 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGAG-CACA
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTG-GTCACA
** * * * * * *
23863342 TGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAA-CTATGGTTACA
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTA-CCGAAAAGCTTTGGTCACA
* * *
23863393 TGTGTAGTACTAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTGGTCACG
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGTCACA
* *
23863444 TATGTAGTACTATGTGAAGGCTACTATGTG
1 TGTGTAGTACTAAGTGAAGGCTACTATGTG
23863474 AAGGCTACTA
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
50 6 0.06
51 95 0.90
52 5 0.05
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGTCACA
Found at i:23863470 original size:14 final size:14
Alignment explanation
Indices: 23863451--23863489 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
23863441 ACGTATGTAG
23863451 TACTATGTGAAGGC
1 TACTATGTGAAGGC
23863465 TACTATGTGAAGGC
1 TACTATGTGAAGGC
*
23863479 TACTACGTGAA
1 TACTATGTGAA
23863490 CTGTAAAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (14 bp):
TACTATGTGAAGGC
Found at i:23866390 original size:8 final size:8
Alignment explanation
Indices: 23866377--23866402 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
23866367 CACTTGTACT
23866377 TTGACTAA
1 TTGACTAA
23866385 TTGACTAA
1 TTGACTAA
23866393 TTGACTAA
1 TTGACTAA
23866401 TT
1 TT
23866403 TAATAAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (8 bp):
TTGACTAA
Found at i:23867468 original size:30 final size:30
Alignment explanation
Indices: 23867434--23867493 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
23867424 GATTTGAAAA
*
23867434 AGGTGATCTAATAACTAAGAATTAACTAAG
1 AGGTGATCCAATAACTAAGAATTAACTAAG
*
23867464 AGGTGATCCGATAACTAAGAATTAACTAAG
1 AGGTGATCCAATAACTAAGAATTAACTAAG
23867494 TAATCAACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (30 bp):
AGGTGATCCAATAACTAAGAATTAACTAAG
Found at i:23869111 original size:7 final size:7
Alignment explanation
Indices: 23869099--23869123 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
23869089 ATTTTAGTGT
23869099 TTCCAAC
1 TTCCAAC
23869106 TTCCAAC
1 TTCCAAC
23869113 TTCCAAC
1 TTCCAAC
23869120 TTCC
1 TTCC
23869124 CCAACGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.32
Consensus pattern (7 bp):
TTCCAAC
Found at i:23875067 original size:50 final size:50
Alignment explanation
Indices: 23874951--23875144 Score: 271
Period size: 50 Copynumber: 3.9 Consensus size: 50
23874941 TAATAATAAC
* * ** *
23874951 ATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTTCTCATATCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCG
* * * ** *
23875002 ATGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCA
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
23875052 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
*
23875102 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
23875145 TTACCCAAAT
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 94 0.73
51 34 0.27
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
Found at i:23880012 original size:28 final size:28
Alignment explanation
Indices: 23879947--23880097 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
23879937 GAGATTGGCG
* * * *
23879947 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
23879976 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
23880004 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
23880032 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
23880060 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
23880087 CTGAGTGTGCG
1 CTAAGTGTGCG
23880098 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:23888255 original size:56 final size:56
Alignment explanation
Indices: 23888164--23888286 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
23888154 GAGATTGGCG
* * *
23888164 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
23888221 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
23888276 CTGAGTGTGCG
1 CTAAGTGTGCG
23888287 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:23888273 original size:27 final size:28
Alignment explanation
Indices: 23888164--23888286 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
23888154 GAGATTGGCG
* * * *
23888164 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
23888193 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
23888221 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
23888249 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
23888276 CTGAGTGTGCG
1 CTAAGTGTGCG
23888287 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:23888297 original size:27 final size:27
Alignment explanation
Indices: 23888189--23888299 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
23888179 TAAATTGTAC
* * *
23888189 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
23888217 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
23888245 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
23888272 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
23888299 A
1 A
23888300 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:23895138 original size:3 final size:3
Alignment explanation
Indices: 23895130--23895174 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
23895120 AAACAAACCT
23895130 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
23895175 AGTTAAAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:23896835 original size:44 final size:44
Alignment explanation
Indices: 23896732--23897801 Score: 460
Period size: 44 Copynumber: 24.5 Consensus size: 44
23896722 TCTGCTTTAT
* * * * * *
23896732 TGCAACTTCAGAGAGATAAGATCTA-CTACTTTAATCCGTTCCAC
1 TGCAACCTCAGGGAGATAAGAT-TATCGACTTCAATCTGCTCCAC
* * * *
23896776 TACAA-CTTAGGGAGATAGGATTATCGACTTGAATCTGCTCCAC
1 TGCAACCTCAGGGAGATAAGATTATCGACTTCAATCTGCTCCAC
* * * * *
23896819 TGCAACCTCAAGGAGATAAGATT-TGCCATCTTCGATCTGCCCCAT
1 TGCAACCTCAGGGAGATAAGATTAT-CGA-CTTCAATCTGCTCCAC
* * * * * *
23896864 TGCCACTTCAGGGGGATAAGATCT-GCTTAC-TCAGTCTGCTCCAC
1 TGCAACCTCAGGGAGATAAGAT-TATC-GACTTCAATCTGCTCCAC
** * * ** *
23896908 TGCAACCTCAGGGAGATAAGA-CCT-GA-TGCGATCCACTCTAC
1 TGCAACCTCAGGGAGATAAGATTATCGACTTCAATCTGCTCCAC
* * * * *
23896949 TGCAACTTCAGAGAGATAAGATCTAT-TACTTTAATCCGCTCCAC
1 TGCAACCTCAGGGAGATAAGAT-TATCGACTTCAATCTGCTCCAC
* * * * *
23896993 TACAACTTCAGGGAGATAGGATTATCGTCTTCAGTCTGCTCCAC
1 TGCAACCTCAGGGAGATAAGATTATCGACTTCAATCTGCTCCAC
* *
23897037 TGCAACCTCAGGGAGATAAGATTTATC-ATCTTCGATCTTC-CCTAC
1 TGCAACCTCAGGGAGATAAGA-TTATCGA-CTTCAATCTGCTCC-AC
* * * * * *
23897082 TGCAACCTCAGGGGGATAAGACCT-GCTTAC-TCAGTCTACTCCAC
1 TGCAACCTCAGGGAGATAAGA-TTATC-GACTTCAATCTGCTCCAC
* * ** * * ** * *
23897126 TACAACCTCAAGGAGATAAGA-CCT-GA-TGCGATCCACTCTAG
1 TGCAACCTCAGGGAGATAAGATTATCGACTTCAATCTGCTCCAC
* * * * * *
23897167 TGCAACTTTAGAGAGATAAGATCTAT-TACTTTAATCCGCTCCAC
1 TGCAACCTCAGGGAGATAAGAT-TATCGACTTCAATCTGCTCCAC
* * *
23897211 TACAACTTCTA-GGAGAT-AGAATTATCGTCTTCAATCTGCTCCAC
1 TGCAACCTC-AGGGAGATAAG-ATTATCGACTTCAATCTGCTCCAC
* *
23897255 TGCAACCTCAGGGAGATAAGATTTATC-ATCTTCGATCTGCCCCAC
1 TGCAACCTCAGGGAGATAAGA-TTATCGA-CTTCAATCTGCTCCAC
* * * *
23897300 AGCAACCTCAAGGG-GATAAGACCTA-CTTACTT-AGTCTGCTCCAC
1 TGCAACCTC-AGGGAGATAAGA-TTATC-GACTTCAATCTGCTCCAC
* *
23897344 TGCAACCTCAGGGAGATAAGACCTGATGCGA--TCCAT-T-CT--AC
1 TGCAACCTCAGGGAGATAAGA--TTAT-CGACTTCAATCTGCTCCAC
* * * * **
23897385 TGCAACTTCAGAGAGATAAGATCTAT-TACTTTAATCCACTCCAC
1 TGCAACCTCAGGGAGATAAGAT-TATCGACTTCAATCTGCTCCAC
* * * *
23897429 TACAACTTCAGGGAGATAGGATTATCGTCTTCAATCTGCTCCAC
1 TGCAACCTCAGGGAGATAAGATTATCGACTTCAATCTGCTCCAC
* * * *
23897473 TGCAACCTCAAGGAGATAAGCTTTATC-ATCTTCGATCTGCCCCAC
1 TGCAACCTCAGGGAGATAAG-ATTATCGA-CTTCAATCTGCTCCAC
* * * * *
23897518 TGCAACCTCAGGGGGATAAGACTT-GCTTAC-TCAGTCTGCTCCGC
1 TGCAACCTCAGGGAGATAAGA-TTATC-GACTTCAATCTGCTCCAC
* ** * ** *
23897562 TGCAACCTTAGGGAGATAAGA-CCT-GA-TGT-GATCCACTCTAC
1 TGCAACCTCAGGGAGATAAGATTATCGACT-TCAATCTGCTCCAC
* * * * *
23897603 TGCAACTTCAGAGAGATAAGATCTAT-TACTTTAATCCGCTCCAC
1 TGCAACCTCAGGGAGATAAGAT-TATCGACTTCAATCTGCTCCAC
* * * * *
23897647 TACAACTTCAGGAAGATAGGATTATCAACTTCAATCTGCTCCAC
1 TGCAACCTCAGGGAGATAAGATTATCGACTTCAATCTGCTCCAC
* * *
23897691 TGCAACCTCAGGGAGATAAGAATTGTC-ATCTTCGATCTGCCCCAC
1 TGCAACCTCAGGGAGATAAG-ATTATCGA-CTTCAATCTGCTCCAC
* * ** ** *
23897736 TGCCACTTCAGTGG-GATAAGACCTGCTC-AC-TCAGCCTGCTCCGC
1 TGCAACCTCAG-GGAGATAAGA--TTATCGACTTCAATCTGCTCCAC
*
23897780 TGCAACCTTAGGGAGATAAGAT
1 TGCAACCTCAGGGAGATAAGAT
23897802 CTGATGTGAT
Statistics
Matches: 762, Mismatches: 199, Indels: 132
0.70 0.18 0.12
Matches are distributed among these distances:
38 1 0.00
39 1 0.00
40 5 0.01
41 99 0.13
42 6 0.01
43 62 0.08
44 380 0.50
45 191 0.25
46 16 0.02
47 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (44 bp):
TGCAACCTCAGGGAGATAAGATTATCGACTTCAATCTGCTCCAC
Found at i:23897095 original size:218 final size:218
Alignment explanation
Indices: 23896708--23897848 Score: 1764
Period size: 218 Copynumber: 5.2 Consensus size: 218
23896698 TTTAGTTGGC
* ** * * * *
23896708 AAGACTTGATGCGATCTGCTTTATTGCAACTTCAGAGAGATAAGATCTACTACTTTAATCCGTTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
* * *
23896773 CACTACAACTT-AGGGAGATAGGATTATCGACTTGAATCTGCTCCACTGCAACCTCAAGGAGATA
66 CACTACAACTTCAGGGAGATAGGATTATCGTCTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
** * * * *
23896837 AGATTTGCCATCTTCGATCTGCCCCATTGCCACTTCAGGGGGATAAGATCTGCTTACTCAGTCTG
131 AGATTTATCATCTTCGATCTGCCCCACTGCAACCTCAGGGGGATAAGACCTGCTTACTCAGTCTG
23896902 CTCCACTGCAACCTCAGGGAGAT
196 CTCCACTGCAACCTCAGGGAGAT
23896925 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
*
23896990 CACTACAACTTCAGGGAGATAGGATTATCGTCTTCAGTCTGCTCCACTGCAACCTCAGGGAGATA
66 CACTACAACTTCAGGGAGATAGGATTATCGTCTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
* * *
23897055 AGATTTATCATCTTCGATCTTCCCTACTGCAACCTCAGGGGGATAAGACCTGCTTACTCAGTCTA
131 AGATTTATCATCTTCGATCTGCCCCACTGCAACCTCAGGGGGATAAGACCTGCTTACTCAGTCTG
* *
23897120 CTCCACTACAACCTCAAGGAGAT
196 CTCCACTGCAACCTCAGGGAGAT
* *
23897143 AAGACCTGATGCGATCCACTCTAGTGCAACTTTAGAGAGATAAGATCTATTACTTTAATCCGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
*
23897208 CACTACAACTTCTA-GGAGATAGAATTATCGTCTTCAATCTGCTCCACTGCAACCTCAGGGAGAT
66 CACTACAACTTC-AGGGAGATAGGATTATCGTCTTCAATCTGCTCCACTGCAACCTCAGGGAGAT
* * * *
23897272 AAGATTTATCATCTTCGATCTGCCCCACAGCAACCTCAAGGGGATAAGACCTACTTACTTAGTCT
130 AAGATTTATCATCTTCGATCTGCCCCACTGCAACCTCAGGGGGATAAGACCTGCTTACTCAGTCT
23897337 GCTCCACTGCAACCTCAGGGAGAT
195 GCTCCACTGCAACCTCAGGGAGAT
* *
23897361 AAGACCTGATGCGATCCATTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCACTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
*
23897426 CACTACAACTTCAGGGAGATAGGATTATCGTCTTCAATCTGCTCCACTGCAACCTCAAGGAGATA
66 CACTACAACTTCAGGGAGATAGGATTATCGTCTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
* *
23897491 AGCTTTATCATCTTCGATCTGCCCCACTGCAACCTCAGGGGGATAAGACTTGCTTACTCAGTCTG
131 AGATTTATCATCTTCGATCTGCCCCACTGCAACCTCAGGGGGATAAGACCTGCTTACTCAGTCTG
* *
23897556 CTCCGCTGCAACCTTAGGGAGAT
196 CTCCACTGCAACCTCAGGGAGAT
*
23897579 AAGACCTGATGTGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
* **
23897644 CACTACAACTTCAGGAAGATAGGATTATCAACTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
66 CACTACAACTTCAGGGAGATAGGATTATCGTCTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
* * * * * * *
23897709 AGAATTGTCATCTTCGATCTGCCCCACTGCCACTTCAGTGGGATAAGACCTGCTCACTCAGCCTG
131 AGATTTATCATCTTCGATCTGCCCCACTGCAACCTCAGGGGGATAAGACCTGCTTACTCAGTCTG
* *
23897774 CTCCGCTGCAACCTTAGGGAGAT
196 CTCCACTGCAACCTCAGGGAGAT
* * * * * *
23897797 AAGATCTGATGTGATCTACTCTACTACAACTTCAGAGATATAATATCTATTA
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTA
23897849 TATTCACTAA
Statistics
Matches: 851, Mismatches: 70, Indels: 5
0.92 0.08 0.01
Matches are distributed among these distances:
217 70 0.08
218 780 0.92
219 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (218 bp):
AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
CACTACAACTTCAGGGAGATAGGATTATCGTCTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
AGATTTATCATCTTCGATCTGCCCCACTGCAACCTCAGGGGGATAAGACCTGCTTACTCAGTCTG
CTCCACTGCAACCTCAGGGAGAT
Found at i:23897556 original size:89 final size:89
Alignment explanation
Indices: 23896808--23897711 Score: 381
Period size: 85 Copynumber: 10.4 Consensus size: 89
23896798 ATCGACTTGA
* * * * * *
23896808 ATCTGCTCCACTGCAACCTCAAGGAGATAAGATTTGC-CATCTTC-GATCTGCCCCATTGCCACT
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGA-TTGCTTA-CTTCAG-TCTGCTCCACTGCAACC
* * * * *
23896871 TCAGGGGGATAAGATCT-GCTTAC-TC-
63 TCAAGGAGATAAGATTTATCAT-CTTCG
* * * ** * *
23896896 AGTCTGCTCCACTGCAACCTCAGGGAGATAAGA--CCTGA-TGC-GATCCACTCTACTGCAACTT
1 A-TCTGCTCCACTGCAACCTCAGGGAGATAAGATTGCTTACTTCAG-TCTGCTCCACTGCAACCT
* * **
23896957 C-AGAGAGATAAGATCTATTA-CTTTA
64 CAAG-GAGATAAGATTTATCATCTTCG
* * * * * *
23896982 ATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGT-CTTCAGTCTGCTCCACTGCAACCTC
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATT-GCTTACTTCAGTCTGCTCCACTGCAACCTC
*
23897046 AGGGAGATAAGATTTATCATCTTCG
65 AAGGAGATAAGATTTATCATCTTCG
* * * * *
23897071 ATCTTC-CCTACTGCAACCTCAGGGGGATAAGACCTGCTTAC-TCAGTCTACTCCACTACAACCT
1 ATCTGCTCC-ACTGCAACCTCAGGGAGATAAGA-TTGCTTACTTCAGTCTGCTCCACTGCAACCT
** * *
23897134 CAAGGAGATAAGA--CCTGA--TGCG
64 CAAGGAGATAAGATTTATCATCTTCG
** * * * * * * * * * * *
23897156 ATCCACTCTAGTGCAACTTTAGAGAGATAAGATCT-ATTACTTTAATCCGCTCCACTACAACTTC
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGAT-TGCTTACTTCAGTCTGCTCCACTGCAACCTC
* * * *
23897220 TAGGAGAT-AGAATTATCGTCTTCA
65 AAGGAGATAAGATTTATCATCTTCG
** * * *
23897244 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTATCATCTTC-GATCTGCCCCACAGCAACCT
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTGCTTA-CTTCAG-TCTGCTCCACTGCAACCT
* ** * *
23897308 CAAGGGGATAAGACCTA-CTTACTTAG
64 CAAGGAGATAAGATTTATCAT-CTTCG
* * * *** * *
23897334 -TCTGCTCCACTGCAACCTCAGGGAGATAAGA--CCTGA-TGC-GATCCATTCTACTGCAACTTC
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTGCTTACTTCAG-TCTGCTCCACTGCAACCTC
* * **
23897394 -AGAGAGATAAGATCTATTA-CTTTA
65 AAG-GAGATAAGATTTATCATCTTCG
** * * * * * *
23897418 ATCCACTCCACTACAACTTCAGGGAGATAGGATTATCGT-CTTCAATCTGCTCCACTGCAACCTC
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATT-GCTTACTTCAGTCTGCTCCACTGCAACCTC
*
23897482 AAGGAGATAAGCTTTATCATCTTCG
65 AAGGAGATAAGATTTATCATCTTCG
* * * *
23897507 ATCTGCCCCACTGCAACCTCAGGGGGATAAGACTTGCTTAC-TCAGTCTGCTCCGCTGCAACCTT
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGA-TTGCTTACTTCAGTCTGCTCCACTGCAACCTC
* ** * *
23897571 AGGGAGATAAGA--CCTGAT-GT-G
65 AAGGAGATAAGATTTATCATCTTCG
** * * * * * * * * *
23897592 ATCCACTCTACTGCAACTTCAGAGAGATAAGATCT-ATTACTTTAATCCGCTCCACTACAACTTC
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGAT-TGCTTACTTCAGTCTGCTCCACTGCAACCTC
* * *
23897656 -AGGAAGATAGGA-TTATCAACTTCA
65 AAGG-AGATAAGATTTATCATCTTCG
23897680 ATCTGCTCCACTGCAACCTCAGGGAGATAAGA
1 ATCTGCTCCACTGCAACCTCAGGGAGATAAGA
23897712 ATTGTCATCT
Statistics
Matches: 594, Mismatches: 176, Indels: 92
0.69 0.20 0.11
Matches are distributed among these distances:
84 21 0.04
85 210 0.35
86 7 0.01
87 10 0.02
88 123 0.21
89 210 0.35
90 13 0.02
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (89 bp):
ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTGCTTACTTCAGTCTGCTCCACTGCAACCTCA
AGGAGATAAGATTTATCATCTTCG
Found at i:23897756 original size:174 final size:173
Alignment explanation
Indices: 23897418--23897760 Score: 385
Period size: 174 Copynumber: 2.0 Consensus size: 173
23897408 TATTACTTTA
* * * *
23897418 ATCCACTCCACTACAACTTCAGGGAGATAGGATTATCGTCTTCAATCTGCTCCACTGCAACCTCA
1 ATCCACTCCACTACAACTTCAGAGAGATAAGATTATC-TCTTCAATCCGCTCCACTACAACCTCA
* * * * * *
23897483 AGGAGATAAGCTTTATCATCTTCGATCTGCCCCACTGCAACCTCAGGGGGATAAGACTTGCTTAC
65 AGGAGATAAGCATTATCAACTTCAATCTGCCCCACTGCAACCTCAGGGAGATAAGAATTGCATAC
* *
23897548 TCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGTG
130 TCAGTCTGCCCCACTGCAACCTTAGGGAGATAAGACCTGATGTG
* * * *
23897592 ATCCACTCTACTGCAACTTCAGAGAGATAAGATCTAT-TACTTTAATCCGCTCCACTACAACTTC
1 ATCCACTCCACTACAACTTCAGAGAGATAAGAT-TATCT-CTTCAATCCGCTCCACTACAACCTC
* *
23897656 -AGGAAGAT-AGGATTATCAACTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGAATTGTCA
64 AAGG-AGATAAGCATTATCAACTTCAATCTGCCCCACTGCAACCTCAGGGAGATAAGAATTG-CA
*
23897719 T-CTTC-GATCTGCCCCACTGCCA-CTTCAGTGG-GATAAGACCTG
127 TAC-TCAG-TCTGCCCCACTGCAACCTT-AG-GGAGATAAGACCTG
23897761 CTCACTCAGC
Statistics
Matches: 142, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
173 54 0.38
174 83 0.58
175 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (173 bp):
ATCCACTCCACTACAACTTCAGAGAGATAAGATTATCTCTTCAATCCGCTCCACTACAACCTCAA
GGAGATAAGCATTATCAACTTCAATCTGCCCCACTGCAACCTCAGGGAGATAAGAATTGCATACT
CAGTCTGCCCCACTGCAACCTTAGGGAGATAAGACCTGATGTG
Found at i:23899121 original size:7 final size:7
Alignment explanation
Indices: 23899107--23899149 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
23899097 AGCCTCTCCA
23899107 TCATTTT
1 TCATTTT
*
23899114 TTATTTT
1 TCATTTT
23899121 TCA-TTT
1 TCATTTT
*
23899127 TCACATTT
1 TCA-TTTT
23899135 TCATTTT
1 TCATTTT
23899142 TCATTTT
1 TCATTTT
23899149 T
1 T
23899150 TTTGACTCGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
6 6 0.19
7 19 0.61
8 6 0.19
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (7 bp):
TCATTTT
Found at i:23900044 original size:22 final size:22
Alignment explanation
Indices: 23899998--23900044 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
23899988 TGGCCTCTCC
* *
23899998 TTTTCTTTTTCCTTTTTTCCCT
1 TTTTCTTTCTCCTTTTTTCCAT
23900020 TTTTCTTTCTCTCTTTTTT-CAT
1 TTTTCTTTCTC-CTTTTTTCCAT
23900042 TTT
1 TTT
23900045 CATTTTGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTCTTTCTCCTTTTTTCCAT
Found at i:23900065 original size:6 final size:6
Alignment explanation
Indices: 23900035--23900107 Score: 53
Period size: 6 Copynumber: 12.7 Consensus size: 6
23900025 TTTCTCTCTT
* * * ** * *
23900035 TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTTTC TTTT-- TCTT-C
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
*
23900080 TTTTGT TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTT
23900108 TTTTATTTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
4 3 0.05
5 3 0.05
6 50 0.89
ACGTcount: A:0.11, C:0.08, G:0.10, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:23906850 original size:51 final size:51
Alignment explanation
Indices: 23906771--23907064 Score: 407
Period size: 50 Copynumber: 5.8 Consensus size: 51
23906761 GATAATAACA
* ** *
23906771 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
* ** *
23906822 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
* ** *
23906873 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGAT-CTCTCATCTCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
* *
23906923 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
* *
23906973 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCCCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
*
23907023 TGCCAATGCCATGTCCCAGACATGGCCTTACATGGGA-CCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCT
23907065 TTACCCAAAT
Statistics
Matches: 225, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
50 140 0.62
51 85 0.38
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
Found at i:23906886 original size:25 final size:25
Alignment explanation
Indices: 23906807--23906886 Score: 58
Period size: 25 Copynumber: 3.2 Consensus size: 25
23906797 CTTACATGGG
23906807 ATGTTCTCATATCGGTGCCCATGCC
1 ATGTTCTCATATCGGTGCCCATGCC
* * * **
23906832 ATG-TCCCAGA-CATGGT-CTTACATGGG
1 ATGTTCTCATATC--GGTGC--CCATGCC
23906858 ATGTTCTCATATCGGTGCCCATGCC
1 ATGTTCTCATATCGGTGCCCATGCC
23906883 ATGT
1 ATGT
23906887 CCCAGACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 14
0.61 0.16 0.23
Matches are distributed among these distances:
23 1 0.03
24 6 0.16
25 14 0.37
26 10 0.26
27 6 0.16
28 1 0.03
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.31
Consensus pattern (25 bp):
ATGTTCTCATATCGGTGCCCATGCC
Found at i:23919099 original size:66 final size:68
Alignment explanation
Indices: 23918974--23919130 Score: 246
Period size: 66 Copynumber: 2.3 Consensus size: 68
23918964 CACTCAATTC
* *
23918974 TTTTTCAGTCTCTTTTTCTTTTTCTATTTTTTTTCTTGCATAAAAATTTCTCTTTTCAAGTTCAC
1 TTTTTTAGTCTCTTTTTCTTTTTCTATTTTTTTTCTCGCATAAAAATTTCTCTTTTCAAGTTCAC
23919039 TA-
66 TAT
*
23919041 TTTTTTAGTCTCTTTTTCTTTTTCTA-TTTTTTTCTCGCATAAAAATTTCTCTTTTCAAGTTTAC
1 TTTTTTAGTCTCTTTTTCTTTTTCTATTTTTTTTCTCGCATAAAAATTTCTCTTTTCAAGTTCAC
23919105 TAT
66 TAT
**
23919108 TTTTTTCTTCTCTTTTTTCTTTT
1 TTTTTTAGTCTC-TTTTTCTTTT
23919131 CGTATTTCAA
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
66 38 0.46
67 35 0.42
68 10 0.12
ACGTcount: A:0.15, C:0.17, G:0.04, T:0.64
Consensus pattern (68 bp):
TTTTTTAGTCTCTTTTTCTTTTTCTATTTTTTTTCTCGCATAAAAATTTCTCTTTTCAAGTTCAC
TAT
Found at i:23919184 original size:19 final size:19
Alignment explanation
Indices: 23919122--23919184 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
23919112 TTCTTCTCTT
*
23919122 TTTTC-TTTTCGTATTTCAA
1 TTTTCTTTTTC-TATTTCAC
23919141 TTTTCTTTTTCTCA-TT--C
1 TTTTCTTTTTCT-ATTTCAC
* *
23919158 TTTGCTTTTTCTTTTTCAC
1 TTTTCTTTTTCTATTTCAC
23919177 TTTTCTTT
1 TTTTCTTT
23919185 CCTCTCATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
17 13 0.37
19 16 0.46
20 6 0.17
ACGTcount: A:0.08, C:0.19, G:0.03, T:0.70
Consensus pattern (19 bp):
TTTTCTTTTTCTATTTCAC
Found at i:23926057 original size:5 final size:5
Alignment explanation
Indices: 23926047--23926075 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
23926037 GATAATTTGA
23926047 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
23926076 CAAAAGCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAAAT
Found at i:23930236 original size:22 final size:22
Alignment explanation
Indices: 23930217--23930269 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
23930207 AATGTTTATA
23930217 TTTTA-ATTTGATTAATTTTAAT
1 TTTTATATTT-ATTAATTTTAAT
* *
23930239 TTTTATATTTTTTAATTTTAGT
1 TTTTATATTTATTAATTTTAAT
*
23930261 TTATATATT
1 TTTTATATT
23930270 ATGTGTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (22 bp):
TTTTATATTTATTAATTTTAAT
Found at i:23932235 original size:29 final size:30
Alignment explanation
Indices: 23932190--23932251 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
23932180 AAAAAAAGTA
* * *
23932190 AAAAATTAATTTTAAATT-T-TTTAAATAT
1 AAAAATTAATATCAAATTATATTAAAATAT
23932218 AAAAATTAAATATCAAATTATATTAAAATAT
1 AAAAATT-AATATCAAATTATATTAAAATAT
23932249 AAA
1 AAA
23932252 GAGTAACAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 7 0.25
29 9 0.32
30 1 0.04
31 11 0.39
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (30 bp):
AAAAATTAATATCAAATTATATTAAAATAT
Found at i:23940577 original size:14 final size:15
Alignment explanation
Indices: 23940550--23940580 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
23940540 ATATTATTTA
23940550 TTAAATTAAATTAAT
1 TTAAATTAAATTAAT
23940565 TTAAATT-AATTAAT
1 TTAAATTAAATTAAT
23940579 TT
1 TT
23940581 TTCCAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTAAATTAAATTAAT
Found at i:23943017 original size:51 final size:51
Alignment explanation
Indices: 23942880--23943025 Score: 172
Period size: 50 Copynumber: 2.9 Consensus size: 51
23942870 CCGTGTAATT
* *
23942880 ATTATC-ATTCGATACACGTAGTAGCCTTCACATAGTACTACACACATGATC
1 ATTATCTA-TCGATACACGTAGTAGCCTGCACATAGTACTACACACATGACC
* * * **
23942931 A--AACTTTCTGATTCACGTAGTAGCCTGCACATAGTACTACACATGTGACC
1 ATTATCTATC-GATACACGTAGTAGCCTGCACATAGTACTACACACATGACC
* *
23942981 ATTATCTATCGATACATGTAGTAGCCTGCACTTAGTACTACACAC
1 ATTATCTATCGATACACGTAGTAGCCTGCACATAGTACTACACAC
23943026 GTGTTTATAG
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
49 4 0.05
50 37 0.47
51 32 0.41
52 5 0.06
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (51 bp):
ATTATCTATCGATACACGTAGTAGCCTGCACATAGTACTACACACATGACC
Found at i:23946736 original size:106 final size:106
Alignment explanation
Indices: 23946387--23946859 Score: 738
Period size: 107 Copynumber: 4.5 Consensus size: 106
23946377 TCGAAACCCA
* *
23946387 GCACATTTTCTCGAATTTCCAAATGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAA-GATATTTG
23946452 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
65 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
* * * *
23946494 GCACGTTTTCTCGAATTTCTAAACGCAAAATATTGCCTTATTTTAAAATTTTAATAGGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAA-AAGATATTTG
23946559 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
65 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
* *
23946601 GCACTTTTTCTCGAATTTCCAAACGCAAAATATTACCTTACTTTGAAATTTTAGAAAGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTA-AAAGATATTTG
* *
23946666 GCTATTTGGTTGAACG-AGAAATCGAAACCCAGCACATTAGG
65 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
* *
23946707 GCACGTTTTCTCGAATTTCCAAATGCAAAATATTGCCTTACTTTGAAATTTTATAAGGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTA-AAAGATATTTG
* * *
23946772 GATATTTGGTC-AACG-AGAAATCAAAACCCAGCACATTAGG
65 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
23946812 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTA-TTTAGAAA
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTT-GAAA
23946860 AATTTTCCTT
Statistics
Matches: 340, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
104 3 0.01
105 71 0.21
106 93 0.27
107 171 0.50
108 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (106 bp):
GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGATATTTGG
CTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
Found at i:23946865 original size:213 final size:214
Alignment explanation
Indices: 23946387--23946859 Score: 760
Period size: 213 Copynumber: 2.2 Consensus size: 214
23946377 TCGAAACCCA
*
23946387 GCACATTTTCTCGAATTTCCAAATGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTG
1 GCACATTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTG
*
23946452 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCTAAA
66 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAAA
* *
23946517 CGCAAAATATTGCCTTATTTTAAAATTTTAATAGGATATTTGGCTATTTGGTCGAACGAAAAAAT
131 CGCAAAATATTGCCTTACTTTAAAATTTTAATAGGATATTTGGATATTTGGTCGAACGAAAAAAT
*
23946582 CGAAACCCAGCACATTAGG
196 CAAAACCCAGCACATTAGG
* *
23946601 GCACTTTTTCTCGAATTTCCAAACGCAAAATATTACCTTACTTTGAAATTTTAGAAA-GATATTT
1 GCACATTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTA-AAAGGATATTT
* *
23946665 GGCTATTTGGTTGAACG-AGAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAA
65 GGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAA
* * *
23946729 ATGCAAAATATTGCCTTACTTTGAAATTTT-ATAAGGATATTTGGATATTTGGTC-AACG-AGAA
130 ACGCAAAATATTGCCTTACTTTAAAATTTTAAT-AGGATATTTGGATATTTGGTCGAACGAAAAA
23946791 ATCAAAACCCAGCACATTAGG
194 ATCAAAACCCAGCACATTAGG
*
23946812 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTA-TTTAGAAA
1 GCACATTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTT-GAAA
23946860 AATTTTCCTT
Statistics
Matches: 242, Mismatches: 14, Indels: 9
0.91 0.05 0.03
Matches are distributed among these distances:
210 3 0.01
211 65 0.27
212 6 0.02
213 92 0.38
214 73 0.30
215 3 0.01
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (214 bp):
GCACATTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTG
GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAAA
CGCAAAATATTGCCTTACTTTAAAATTTTAATAGGATATTTGGATATTTGGTCGAACGAAAAAAT
CAAAACCCAGCACATTAGG
Found at i:23956850 original size:95 final size:96
Alignment explanation
Indices: 23956666--23956939 Score: 299
Period size: 96 Copynumber: 2.9 Consensus size: 96
23956656 GTTTGTCAAT
* * ** * ** *
23956666 TAAATTAATTATAAATTTTT-CAAAATTGGATTA-GGTTTCGTGTTTATTGTTTTTTAAGAGAAA
1 TAAATTAATTATAAATTTTTATAAAATTAGATTAGGGTTTAATGATTAGAG-TTTCTAAG-GAAA
* * *
23956729 AATTAATTAAATTAGGGTTTAGGGTTACTTGAG
64 AATCAAATAAATTAGGGTTCAGGGTTACTTGAG
* *
23956762 TAATTTAA-T-TAAATTTTTTTAAAAATTAGATTAGGGTTT-A-GAGTTAAGAGTTTCTAAGGAA
1 TAAATTAATTATAAATTTTTAT-AAAATTAGATTAGGGTTTAATGA-TT-AGAGTTTCTAAGGAA
23956823 AAATCAAATAAATTAGGGTTCAGGGTTACTTGAG
63 AAATCAAATAAATTAGGGTTCAGGGTTACTTGAG
* * *
23956857 TAAATTAATTATAAATTTTTATAAAATTAGATTAGGGTTTAATGATTAGGGTTTTTAAGTAAGAA
1 TAAATTAATTATAAATTTTTATAAAATTAGATTAGGGTTTAATGATTAGAGTTTCTAAGGAA-AA
*
23956922 CTCAAATAAATTAGGGTT
65 ATCAAATAAATTAGGGTT
23956940 TTGGGTTTTG
Statistics
Matches: 151, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
94 9 0.06
95 43 0.28
96 58 0.38
97 39 0.26
98 2 0.01
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (96 bp):
TAAATTAATTATAAATTTTTATAAAATTAGATTAGGGTTTAATGATTAGAGTTTCTAAGGAAAAA
TCAAATAAATTAGGGTTCAGGGTTACTTGAG
Found at i:23957204 original size:126 final size:126
Alignment explanation
Indices: 23956979--23957394 Score: 670
Period size: 126 Copynumber: 3.3 Consensus size: 126
23956969 TTGTTAATTT
* * *
23956979 AAAGAAGCTCCCACGTGGACACACTTTTGCTACAGTAGCTCCTGAAAAATTAATTTTGAGTAGAC
1 AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* * *
23957044 GTTTCTGTGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGTATAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
23957105 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTTCTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
*
23957170 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * * *
23957231 AAAGAAGCTCCCACATAGACGCGCTTTTGCTATAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* * * *
23957296 GTTTCTGAGAAAATAGTGTCAAAAATGTTTTAAGTAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
*
23957357 AAAGAAGCTCCCACGTGGACACGCTTTTGCTATAGTAG
1 AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAG
23957395 TGCATGTTTG
Statistics
Matches: 269, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 269 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:23958484 original size:52 final size:52
Alignment explanation
Indices: 23958401--23958501 Score: 193
Period size: 52 Copynumber: 1.9 Consensus size: 52
23958391 TAAGGAAAAG
*
23958401 TAATGGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
23958453 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
23958502 TATGTGCATG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (52 bp):
TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
Found at i:23966033 original size:34 final size:35
Alignment explanation
Indices: 23965995--23966062 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 35
23965985 TCTATAAGTA
**
23965995 AATTTCTATTTTAGTACATGGAATAATAT-AAAAG
1 AATTTCTATTTTAGTACATCAAATAATATCAAAAG
*
23966029 AATTTCTATTTTATTACATCAAATAATATCAAAA
1 AATTTCTATTTTAGTACATCAAATAATATCAAAA
23966063 TATTCAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.40
Consensus pattern (35 bp):
AATTTCTATTTTAGTACATCAAATAATATCAAAAG
Found at i:23972664 original size:51 final size:50
Alignment explanation
Indices: 23972533--23972669 Score: 156
Period size: 50 Copynumber: 2.7 Consensus size: 50
23972523 GAAAGTGATG
* *
23972533 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTGCCCGAATGATAGGTC
1 GTCACGTGT-TAGTACTATGTGCAGGCTACTATGTGTGACCG-A-GATAGGTC
* *
23972586 G-CATGTGTT-GTACTATGTGCAGGCTACTATGTGT-ACCG-GATAGCTTC
1 GTCACGTGTTAGTACTATGTGCAGGCTACTATGTGTGACCGAGATAG-GTC
23972633 GATCACGTGTATAGTACTATGTGCAGGCTACTATGTG
1 G-TCACGTGT-TAGTACTATGTGCAGGCTACTATGTG
23972670 AACTGGTATC
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
46 5 0.07
47 3 0.04
49 9 0.12
50 25 0.34
51 25 0.34
52 6 0.08
53 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (50 bp):
GTCACGTGTTAGTACTATGTGCAGGCTACTATGTGTGACCGAGATAGGTC
Found at i:23972914 original size:16 final size:16
Alignment explanation
Indices: 23972893--23972924 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23972883 TGATTGAAAG
*
23972893 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
23972909 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
23972925 GCAAGAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:23980005 original size:17 final size:18
Alignment explanation
Indices: 23979983--23980016 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23979973 TTTGGGCCGA
23979983 GTGGGC-CACACAGGCAT
1 GTGGGCTCACACAGGCAT
*
23980000 GTGGGCTCACACGGGCA
1 GTGGGCTCACACAGGCA
23980017 GTCCACATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.29, G:0.38, T:0.12
Consensus pattern (18 bp):
GTGGGCTCACACAGGCAT
Found at i:23987921 original size:16 final size:16
Alignment explanation
Indices: 23987900--23987938 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
23987890 AATGAGCCAT
*
23987900 ATCCATGAATCTAGCC
1 ATCCATGAATCCAGCC
*
23987916 ATCCATGTATCCAGCC
1 ATCCATGAATCCAGCC
*
23987932 ATTCATG
1 ATCCATG
23987939 TATGCTCCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (16 bp):
ATCCATGAATCCAGCC
Found at i:23988451 original size:20 final size:21
Alignment explanation
Indices: 23988428--23988466 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
23988418 AATAAATTAA
23988428 AATCAAATT-CAA-TGAGCTAG
1 AATC-AATTCCAATTGAGCTAG
23988448 AATCAATTCCAATTGAGCT
1 AATCAATTCCAATTGAGCT
23988467 CCATTGGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 7 0.41
21 6 0.35
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (21 bp):
AATCAATTCCAATTGAGCTAG
Found at i:23991436 original size:15 final size:14
Alignment explanation
Indices: 23991416--23991451 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
23991406 ATTTCTTATC
23991416 TTTTTTTTCATGAA
1 TTTTTTTTCATGAA
23991430 TTTTTTTTCATGAA
1 TTTTTTTTCATGAA
23991444 TTTTTTTT
1 TTTTTTTT
23991452 ACGAACTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.72
Consensus pattern (14 bp):
TTTTTTTTCATGAA
Found at i:23995949 original size:20 final size:20
Alignment explanation
Indices: 23995924--23995992 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
23995914 ATATGCAATT
*
23995924 CAGGGGTACCGAAGTACAAA
1 CAGGGGCACCGAAGTACAAA
* * *
23995944 CAGGGGCA-TGTAAGTGCAATT
1 CAGGGGCACCG-AAGTACAA-A
*
23995965 CAGGGGCACCAAAGTACAAA
1 CAGGGGCACCGAAGTACAAA
23995985 CAGGGGCA
1 CAGGGGCA
23995993 TGTAAGTGCA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
19 1 0.03
20 22 0.58
21 15 0.39
ACGTcount: A:0.36, C:0.20, G:0.32, T:0.12
Consensus pattern (20 bp):
CAGGGGCACCGAAGTACAAA
Found at i:23995969 original size:21 final size:21
Alignment explanation
Indices: 23995944--23996028 Score: 118
Period size: 21 Copynumber: 4.1 Consensus size: 21
23995934 GAAGTACAAA
23995944 CAGGGGCATGTAAGTGCAATT
1 CAGGGGCATGTAAGTGCAATT
*** * *
23995965 CAGGGGCACCAAAGTACAA-A
1 CAGGGGCATGTAAGTGCAATT
23995985 CAGGGGCATGTAAGTGCAATT
1 CAGGGGCATGTAAGTGCAATT
23996006 CAGGGGCATGTAAGTGCAATT
1 CAGGGGCATGTAAGTGCAATT
23996027 CA
1 CA
23996029 CGGGACAAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
20 15 0.28
21 38 0.72
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.19
Consensus pattern (21 bp):
CAGGGGCATGTAAGTGCAATT
Found at i:23996013 original size:41 final size:41
Alignment explanation
Indices: 23995772--23996011 Score: 232
Period size: 41 Copynumber: 5.9 Consensus size: 41
23995762 AAGTTACCCG
* * * * * *
23995772 AGTATAAACAGGGGCAC-AAATGTGCTATTTAGGGGTATCGA
1 AGTACAAACAGGGGCACGTAA-GTGCAATTCAGGGGTACCAA
* * * * * *
23995813 AGTACAAATAGGGGCACGTATGTACGATTCAAGAGTACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCAA
* * * *
23995854 AGTACAAACAGGGGCACATATGTGCAATTCAAGGGTACAAA
1 AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCAA
* * * * *
23995895 ATTACAAATAGGGACACATATA-TGCAATTCAGGGGTACCGA
1 AGTACAAACAGGGGCACGTA-AGTGCAATTCAGGGGTACCAA
* *
23995936 AGTACAAACAGGGGCATGTAAGTGCAATTCAGGGGCACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCAA
*
23995977 AGTACAAACAGGGGCATGTAAGTGCAATTCAGGGG
1 AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGG
23996012 CATGTAAGTG
Statistics
Matches: 165, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
40 1 0.01
41 163 0.99
42 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (41 bp):
AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCAA
Found at i:23996798 original size:16 final size:16
Alignment explanation
Indices: 23996777--23996845 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
23996767 TTTGGTTCGC
23996777 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23996793 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23996809 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
23996826 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23996842 TGTA
1 TGTA
23996846 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23996823 original size:33 final size:32
Alignment explanation
Indices: 23996777--23996845 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
23996767 TTTGGTTCGC
23996777 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
23996809 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
23996842 TGTA
1 TGTA
23996846 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:23996910 original size:44 final size:45
Alignment explanation
Indices: 23996826--23996916 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
23996816 GGATTAGAGG
* * *
23996826 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
23996871 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
23996915 TG
1 TG
23996917 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:23997098 original size:16 final size:16
Alignment explanation
Indices: 23997061--23997115 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
23997051 TTAATCATAT
*
23997061 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
23997077 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
23997092 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
23997110 -TAAAAT
1 TTAAAAT
23997116 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:23997108 original size:18 final size:18
Alignment explanation
Indices: 23997067--23997115 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
23997057 ATATTTAAAC
23997067 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
23997085 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
23997101 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
23997116 TCTTAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:23997346 original size:14 final size:15
Alignment explanation
Indices: 23997297--23997348 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23997287 ATAAAATATA
23997297 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
23997312 TATTAAATATATTAT
1 AATTAAATATATTAT
23997327 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
23997340 AATTTAATA
1 AATTAAATA
23997349 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:23997457 original size:16 final size:17
Alignment explanation
Indices: 23997432--23997472 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
23997422 AAATAATTAA
23997432 AATT-AAATATAT-TTT
1 AATTAAAATATATATTT
23997447 AATTAAAATATATGATTT
1 AATTAAAATATAT-ATTT
23997465 AA-TAAAAT
1 AATTAAAAT
23997473 TTAAAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.17
16 8 0.35
17 6 0.26
18 5 0.22
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
AATTAAAATATATATTT
Found at i:23997484 original size:120 final size:120
Alignment explanation
Indices: 23997064--23997473 Score: 693
Period size: 120 Copynumber: 3.4 Consensus size: 120
23997054 ATCATATTTA
*
23997064 AACATAATTATAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
23997129 TATTCTTATATGAATGTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
23997184 AACATAA-T-T-ATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
23997246 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* *
23997301 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* * *
23997366 TATTCTTATATGAATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA-ATT
* * *
23997422 AA-ATAATTAAAATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
23997474 TAAAATAATT
Statistics
Matches: 276, Mismatches: 10, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
117 113 0.41
118 2 0.01
119 2 0.01
120 155 0.56
121 4 0.01
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATAATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:24006389 original size:20 final size:20
Alignment explanation
Indices: 24006364--24006424 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
24006354 ATCTATAATT
24006364 TAGGGGTACCGAAGTACAAA
1 TAGGGGTACCGAAGTACAAA
* ** * * *
24006384 TAGGGGCACATATGTGCAAT
1 TAGGGGTACCGAAGTACAAA
24006404 TCAGGGGTACCGAAGTACAAA
1 T-AGGGGTACCGAAGTACAAA
24006425 CATGGGCATG
Statistics
Matches: 28, Mismatches: 12, Indels: 1
0.68 0.29 0.02
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.18
Consensus pattern (20 bp):
TAGGGGTACCGAAGTACAAA
Found at i:24006389 original size:41 final size:41
Alignment explanation
Indices: 24006330--24006489 Score: 205
Period size: 41 Copynumber: 3.9 Consensus size: 41
24006320 AATTTGAAGT
* * *
24006330 TACCG-AGTACAAACAGGGGCACGTATCTATAATTTAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGTAATTCAGGGG
* * *
24006370 TACCGAAGTACAAATAGGGGCACATATGTGCAATTCAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGTAATTCAGGGG
* * *
24006411 TACCGAAGTACAAACATGGGCATGTAAGTGTAATTCAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGTAATTCAGGGG
* * *
24006452 TACTGAAGTACAAACAGGGGCACGTAAGTGTAGTTCAG
1 TACCGAAGTACAAACAGGGGCACGTATGTGTAATTCAG
24006490 AAAATAATTA
Statistics
Matches: 103, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 5 0.05
41 98 0.95
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (41 bp):
TACCGAAGTACAAACAGGGGCACGTATGTGTAATTCAGGGG
Found at i:24006471 original size:20 final size:20
Alignment explanation
Indices: 24006365--24006471 Score: 56
Period size: 20 Copynumber: 5.2 Consensus size: 20
24006355 TCTATAATTT
* *
24006365 AGGGGTACCGAAGTACAAAT
1 AGGGGTACTGAAGTACAAAC
* * * *
24006385 AGGGGCACAT-ATGTGCAATTC
1 AGGGGTAC-TGAAGTACAA-AC
*
24006406 AGGGGTACCGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
* * ** *
24006426 ATGGGCA-TGTAAGTGTAATTC
1 AGGGGTACTG-AAGTACAA-AC
24006447 AGGGGTACTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
24006467 AGGGG
1 AGGGG
24006472 CACGTAAGTG
Statistics
Matches: 59, Mismatches: 22, Indels: 12
0.63 0.24 0.13
Matches are distributed among these distances:
19 1 0.02
20 31 0.53
21 25 0.42
22 2 0.03
ACGTcount: A:0.35, C:0.15, G:0.32, T:0.19
Consensus pattern (20 bp):
AGGGGTACTGAAGTACAAAC
Found at i:24006480 original size:20 final size:20
Alignment explanation
Indices: 24006335--24006480 Score: 55
Period size: 20 Copynumber: 7.2 Consensus size: 20
24006325 GAAGTTACCG
24006335 AGTACAAACAGGGGCACGTA
1 AGTACAAACAGGGGCACGTA
** * ** *
24006355 TCTATAATTTAGGGGTACCG-A
1 AGTACAA-ACAGGGGCA-CGTA
* *
24006376 AGTACAAATAGGGGCACATA
1 AGTACAAACAGGGGCACGTA
* * * *
24006396 TGTGCAATTCAGGGGTACCG-A
1 AGTACAA-ACAGGGGCA-CGTA
* *
24006417 AGTACAAACATGGGCATGTA
1 AGTACAAACAGGGGCACGTA
** * *
24006437 AGTGTAATTCAGGGGTAC-TGA
1 AGTACAA-ACAGGGGCACGT-A
24006458 AGTACAAACAGGGGCACGTA
1 AGTACAAACAGGGGCACGTA
24006478 AGT
1 AGT
24006481 GTAGTTCAGA
Statistics
Matches: 83, Mismatches: 34, Indels: 18
0.61 0.25 0.13
Matches are distributed among these distances:
19 2 0.02
20 42 0.51
21 36 0.43
22 3 0.04
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.21
Consensus pattern (20 bp):
AGTACAAACAGGGGCACGTA
Found at i:24010074 original size:3 final size:3
Alignment explanation
Indices: 24010022--24010058 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
24010012 AAGACAAAAG
*
24010022 AGA ATA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
24010059 AGGAGATGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:24013636 original size:71 final size:71
Alignment explanation
Indices: 24013561--24013720 Score: 205
Period size: 71 Copynumber: 2.3 Consensus size: 71
24013551 CGATGTCACA
* * *
24013561 ACAACAACCATTCAATGTCACAACAACAAACTTGGAACCTAGATGG-GGACCATACAACCTTCAA
1 ACAACAACCACTCAATGTCACAACAACAAACTTCGAACCTAGA-GGAGAACCATACAACCTTCAA
*
24013625 TGTTGTG
65 TGTCGTG
* * * * * *
24013632 ACAACAACCACTCAATGTCACGACAATAATCTTCGAACCTAGAGGATAAGCATTCAACCTTCAAT
1 ACAACAACCACTCAATGTCACAACAACAAACTTCGAACCTAGAGGAGAACCATACAACCTTCAAT
24013697 GTCGTG
66 GTCGTG
*
24013703 ACAAAAACCACTCAATGT
1 ACAACAACCACTCAATGT
24013721 TGCAATATCG
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
70 2 0.03
71 75 0.97
ACGTcount: A:0.39, C:0.26, G:0.14, T:0.21
Consensus pattern (71 bp):
ACAACAACCACTCAATGTCACAACAACAAACTTCGAACCTAGAGGAGAACCATACAACCTTCAAT
GTCGTG
Found at i:24013735 original size:71 final size:70
Alignment explanation
Indices: 24013615--24013777 Score: 186
Period size: 71 Copynumber: 2.3 Consensus size: 70
24013605 GGGGACCATA
* * * *
24013615 CAACCTTCAATGTTGTGACAACAACCACTCAATGTCACGACAATAATCTTCGAACCTAGAGGATA
1 CAACCTTCAATGTCGTGACAAAAACCACTCAATGT-ACGACAATAATCTTCGAACCAAGAGGACA
24013680 AGCATT
65 AGCATT
* * * *
24013686 CAACCTTCAATGTCGTGACAAAAACCACTCAATGT-TG-CAATATCGATCTTTGAACCAATAGGG
1 CAACCTTCAATGTCGTGACAAAAACCACTCAATGTACGACAATA---ATCTTCGAACCAAGAGGA
24013749 CAAGCATT
63 CAAGCATT
**
24013757 CAATGTTCAATGTCGTGACAA
1 CAACCTTCAATGTCGTGACAA
24013778 TGGCCATAGG
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
68 5 0.06
69 1 0.01
71 73 0.92
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (70 bp):
CAACCTTCAATGTCGTGACAAAAACCACTCAATGTACGACAATAATCTTCGAACCAAGAGGACAA
GCATT
Found at i:24015830 original size:12 final size:11
Alignment explanation
Indices: 24015802--24015845 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
24015792 AGATAAATGT
*
24015802 TATTTAATTAA
1 TATTTTATTAA
24015813 TATTTTATTAA
1 TATTTTATTAA
* *
24015824 TATTTTTAGTAT
1 TA-TTTTATTAA
24015836 TATTTTATTA
1 TATTTTATTA
24015846 TTAAATGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:24022004 original size:60 final size:60
Alignment explanation
Indices: 24021912--24022033 Score: 154
Period size: 60 Copynumber: 2.0 Consensus size: 60
24021902 AAGTCTAATA
* * * * *
24021912 TATGAGAACACCTTTGTGTCTATCTGAAGTTATAAGGACACCTTTGTGGCTATCTGATGT
1 TATGACAACAACTTTGTGGCTATCTGAAGTTATAAGGACACCTTTATGGCTATCTAATGT
* * ** *
24021972 TATGACAACAACTTTGTGGCTATTTGATGTTATTTGGGCACCTTTATGGCTATCTAATGT
1 TATGACAACAACTTTGTGGCTATCTGAAGTTATAAGGACACCTTTATGGCTATCTAATGT
24022032 TA
1 TA
24022034 CATGGACACC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (60 bp):
TATGACAACAACTTTGTGGCTATCTGAAGTTATAAGGACACCTTTATGGCTATCTAATGT
Found at i:24022057 original size:30 final size:30
Alignment explanation
Indices: 24021910--24022057 Score: 129
Period size: 30 Copynumber: 4.9 Consensus size: 30
24021900 TGAAGTCTAA
*
24021910 TATATGAGAACACCTTTGTGTCTATCTGAA-GT
1 TATATG-G-ACACCTTTGTGGCTATCT-AATGT
* *
24021942 TATAAGGACACCTTTGTGGCTATCTGATGT
1 TATATGGACACCTTTGTGGCTATCTAATGT
** * * *
24021972 TATGA-CAACAACTTTGTGGCTATTTGATGT
1 TAT-ATGGACACCTTTGTGGCTATCTAATGT
* * *
24022002 TATTTGGGCACCTTTATGGCTATCTAATGT
1 TATATGGACACCTTTGTGGCTATCTAATGT
* *
24022032 TACATGGACACCTTTGTAGCTATCTA
1 TATATGGACACCTTTGTGGCTATCTA
24022058 TCTATCTATC
Statistics
Matches: 93, Mismatches: 20, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
29 1 0.01
30 85 0.91
31 2 0.02
32 5 0.05
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.39
Consensus pattern (30 bp):
TATATGGACACCTTTGTGGCTATCTAATGT
Found at i:24022654 original size:40 final size:40
Alignment explanation
Indices: 24022599--24022679 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
24022589 TTAATTTTAA
24022599 TAAACTCATCTTAGTTAATAATTGAGTTGTTGGACTATAT
1 TAAACTCATCTTAGTTAATAATTGAGTTGTTGGACTATAT
* * *
24022639 TAAACTCATTTTAGTTAATAATTGCGTTGTTGGACTTTAT
1 TAAACTCATCTTAGTTAATAATTGAGTTGTTGGACTATAT
24022679 T
1 T
24022680 TTCATTAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.46
Consensus pattern (40 bp):
TAAACTCATCTTAGTTAATAATTGAGTTGTTGGACTATAT
Found at i:24022830 original size:9 final size:9
Alignment explanation
Indices: 24022803--24022849 Score: 58
Period size: 9 Copynumber: 4.9 Consensus size: 9
24022793 TAAGTTTAAT
24022803 ATGTGTTTAA
1 ATGTGTTT-A
*
24022813 ATATGTTTA
1 ATGTGTTTA
24022822 ATGTGTTTA
1 ATGTGTTTA
24022831 ATGTGTTTTTA
1 ATGTG--TTTA
24022842 ATGTGTTT
1 ATGTGTTT
24022850 TGATTGTAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 17 0.52
10 7 0.21
11 9 0.27
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.57
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:24022844 original size:11 final size:11
Alignment explanation
Indices: 24022818--24022850 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
24022808 TTTAAATATG
24022818 TTTAATGTG--
1 TTTAATGTGTT
24022827 TTTAATGTGTT
1 TTTAATGTGTT
24022838 TTTAATGTGTT
1 TTTAATGTGTT
24022849 TT
1 TT
24022851 GATTGTAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.41
11 13 0.59
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (11 bp):
TTTAATGTGTT
Found at i:24030533 original size:40 final size:40
Alignment explanation
Indices: 24030478--24030904 Score: 746
Period size: 40 Copynumber: 10.7 Consensus size: 40
24030468 AGCATTGGAT
24030478 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24030518 TATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24030558 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24030598 TATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
24030638 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24030678 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24030718 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24030758 TATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
24030798 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24030838 TATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
24030878 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
24030905 ATGTGTTTGC
Statistics
Matches: 365, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 365 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:24039173 original size:40 final size:40
Alignment explanation
Indices: 24039118--24039393 Score: 525
Period size: 40 Copynumber: 6.9 Consensus size: 40
24039108 AGCATTGGAT
24039118 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24039158 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24039198 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24039238 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24039278 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24039318 TATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24039358 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAG
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
24039394 ATGAGGCAAT
Statistics
Matches: 231, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 231 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:24039456 original size:40 final size:40
Alignment explanation
Indices: 24039397--24039562 Score: 287
Period size: 40 Copynumber: 4.2 Consensus size: 40
24039387 ATGCGAGATG
24039397 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGA
1 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGA
* *
24039437 AGGTAATTATGCGAGTTGATATATCCGGGCTATGACCCGA
1 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGA
*
24039477 AGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGA
1 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGA
* *
24039517 AGGCAATTATGCGAGTTGATATGTCCGGGTTAAGACCCGA
1 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGA
24039557 AGGCAA
1 AGGCAA
24039563 ATGTGTTTGC
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 118 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (40 bp):
AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGA
Found at i:24039468 original size:98 final size:98
Alignment explanation
Indices: 24039299--24039495 Score: 385
Period size: 98 Copynumber: 2.0 Consensus size: 98
24039289 TAAGACCCGA
24039299 AGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGATATATC
1 AGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGATATATC
24039364 CGGGCTATGACCCGAAGGCAATTATGCGAGATG
66 CGGGCTATGACCCGAAGGCAATTATGCGAGATG
*
24039397 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGATATATC
1 AGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGATATATC
24039462 CGGGCTATGACCCGAAGGCAATTATGCGAGATG
66 CGGGCTATGACCCGAAGGCAATTATGCGAGATG
24039495 A
1 A
24039496 TATATCCGGG
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (98 bp):
AGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGATATATC
CGGGCTATGACCCGAAGGCAATTATGCGAGATG
Found at i:24039507 original size:138 final size:138
Alignment explanation
Indices: 24039259--24039531 Score: 492
Period size: 138 Copynumber: 2.0 Consensus size: 138
24039249 TAAGACCCGA
24039259 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATC
1 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATC
* * *
24039324 CGGGCTAAGACCCGAAGGTAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTAT
66 CGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTAT
24039389 GCGAGATG
131 GCGAGATG
* *
24039397 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGATATATC
1 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATC
*
24039462 CGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTAT
66 CGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTAT
24039527 GCGAG
131 GCGAG
24039532 TTGATATGTC
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 129 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (138 bp):
AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATC
CGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTAT
GCGAGATG
Found at i:24039518 original size:178 final size:178
Alignment explanation
Indices: 24039219--24039562 Score: 634
Period size: 178 Copynumber: 1.9 Consensus size: 178
24039209 TAAGACCCGA
24039219 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATC
1 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATC
*
24039284 CGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGTAATTAT
66 CGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTAT
*
24039349 GCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
131 GCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
24039397 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGATATATC
1 AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATC
*
24039462 CGGGCTATGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTAT
66 CGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTAT
* *
24039527 GCGAGTTGATATGTCCGGGTTAAGACCCGAAGGCAA
131 GCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAA
24039563 ATGTGTTTGC
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
178 160 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (178 bp):
AGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATC
CGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTAT
GCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
Found at i:24050563 original size:19 final size:19
Alignment explanation
Indices: 24050541--24050582 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
24050531 AGCTTATTAA
24050541 GTTTAATATGTGTTAATAT
1 GTTTAATATGTGTTAATAT
* * *
24050560 GTTTAATGTGTTTTAATGT
1 GTTTAATATGTGTTAATAT
24050579 GTTT
1 GTTT
24050583 TTAATGTGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.19, T:0.57
Consensus pattern (19 bp):
GTTTAATATGTGTTAATAT
Found at i:24050583 original size:10 final size:10
Alignment explanation
Indices: 24050542--24050594 Score: 63
Period size: 10 Copynumber: 5.3 Consensus size: 10
24050532 GCTTATTAAG
*
24050542 TTTAATATGT
1 TTTAATGTGT
* *
24050552 GTTAATATG-
1 TTTAATGTGT
24050561 TTTAATGTGT
1 TTTAATGTGT
24050571 TTTAATGTGTT
1 TTTAATGTG-T
24050582 TTTAATGTGT
1 TTTAATGTGT
24050592 TTT
1 TTT
24050595 GATTTTTCCT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 7 0.18
10 21 0.55
11 10 0.26
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (10 bp):
TTTAATGTGT
Found at i:24050586 original size:11 final size:11
Alignment explanation
Indices: 24050561--24050594 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
24050551 TGTTAATATG
24050561 TTTAATGTG-T
1 TTTAATGTGTT
24050571 TTTAATGTGTT
1 TTTAATGTGTT
24050582 TTTAATGTGTT
1 TTTAATGTGTT
24050593 TT
1 TT
24050595 GATTTTTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.65
Consensus pattern (11 bp):
TTTAATGTGTT
Found at i:24058236 original size:40 final size:40
Alignment explanation
Indices: 24058191--24058571 Score: 675
Period size: 40 Copynumber: 9.7 Consensus size: 40
24058181 GCATTTGGAT
24058191 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24058231 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24058271 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24058311 TATATCCGGGCTAAGACCCGAAGGCAA-TATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24058350 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24058390 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24058430 TATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24058470 TATA-CC-GGCT--GA-CCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24058505 TATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
24058545 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
24058572 ATGTGTTGCG
Statistics
Matches: 327, Mismatches: 8, Indels: 12
0.94 0.02 0.03
Matches are distributed among these distances:
35 25 0.08
36 4 0.01
37 4 0.01
38 4 0.01
39 43 0.13
40 247 0.76
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:24066852 original size:40 final size:40
Alignment explanation
Indices: 24066797--24067223 Score: 755
Period size: 40 Copynumber: 10.7 Consensus size: 40
24066787 AGCATTGGAT
24066797 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24066837 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24066877 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24066917 TATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
24066957 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24066997 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
24067037 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24067077 TATATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
** *
24067117 TATATCCGGGCTGTGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
24067157 TATATCCGGGCTAAGACCCGAAGGTAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
24067197 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
24067224 ATGTGTTTGC
Statistics
Matches: 367, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 367 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:24072685 original size:17 final size:18
Alignment explanation
Indices: 24072652--24072686 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
24072642 GAAATAAAAC
*
24072652 ATGACAATGAAATATCAG
1 ATGACAATGAAAAATCAG
24072670 ATGACAA-GAAAAATCAG
1 ATGACAATGAAAAATCAG
24072687 CACCACCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (18 bp):
ATGACAATGAAAAATCAG
Found at i:24072918 original size:20 final size:18
Alignment explanation
Indices: 24072890--24072937 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
24072880 AAGAAAAGTG
24072890 ATAATAATAATAAAATAAA
1 ATAA-AATAATAAAATAAA
* *
24072909 TATAACAATAATGACATAAA
1 -ATAA-AATAATAAAATAAA
24072929 ATAAAATAA
1 ATAAAATAA
24072938 GAGTTGATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 5 0.20
19 4 0.16
20 16 0.64
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (18 bp):
ATAAAATAATAAAATAAA
Found at i:24075754 original size:98 final size:98
Alignment explanation
Indices: 24075633--24075825 Score: 287
Period size: 98 Copynumber: 2.0 Consensus size: 98
24075623 AAAAATCATA
* * *
24075633 AAGGAAATTTTTCGAGTTTGGGATTATAAAGGAATTGTGTCCTAACGTACTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATTGTGCCCTAACGTACTGGGTGTGATTTCTT
* *
24075698 AAATCTTGGATAAGCGGATGTTCTTTTAAAGTG
66 AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
* * * * *
24075731 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATTGTGCCCTAACTTATTGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATTGTGCCCTAACGTACTGGGTGTGATTTCTT
*
24075796 AAATCTTGGATAAGTGAATGTTCCTTTAAA
66 AAATCTTGGATAAGCGAATGTTCCTTTAAA
24075826 ATTTCTCATT
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
98 84 1.00
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.38
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATTGTGCCCTAACGTACTGGGTGTGATTTCTT
AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
Found at i:24079252 original size:267 final size:267
Alignment explanation
Indices: 24078777--24079309 Score: 1039
Period size: 267 Copynumber: 2.0 Consensus size: 267
24078767 ATATACAGAC
*
24078777 TTTAGCAGTACAAGCTGACACGCTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
1 TTTAGCAGTACAAGCTGACACACTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
*
24078842 TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTCATT
66 TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTAATT
24078907 TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
131 TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
24078972 TTTCTGCATTCATTTCATGCATTGCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
196 TTTCTGCATTCATTTCATGCATTGCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
24079037 ATTAATT
261 ATTAATT
24079044 TTTAGCAGTACAAGCTGACACACTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
1 TTTAGCAGTACAAGCTGACACACTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
24079109 TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTAATT
66 TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTAATT
24079174 TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
131 TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
*
24079239 TTTCTGCATTCATTTCATGCATTTCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
196 TTTCTGCATTCATTTCATGCATTGCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
24079304 ATTAAT
261 ATTAAT
24079310 CTAAATCACT
Statistics
Matches: 263, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
267 263 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.38
Consensus pattern (267 bp):
TTTAGCAGTACAAGCTGACACACTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTAATT
TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
TTTCTGCATTCATTTCATGCATTGCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
ATTAATT
Found at i:24087523 original size:44 final size:43
Alignment explanation
Indices: 24087473--24087905 Score: 233
Period size: 45 Copynumber: 9.7 Consensus size: 43
24087463 GGTCGCATCT
*
24087473 AGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCA
* *
24087517 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGAA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCA
* * * *
24087562 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGA-TTA-AAGCCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A
* * * * * * * *
24087605 TAATCCTATCTCCTTGAAGTTACATTGGAGCAGATTAA-AACCTC
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-A
* * * * * * * *
24087649 AGATCTTATCTCTCTGAAGTTACAG-AGAGCATA-T-CGTATCT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA
*
24087690 AGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG--AAGCA
* * *
24087735 AGTCTTATC-CTCCTGAAGTTGCAGTGAGTTGCAGA-GAGTAGATCGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTG-G-AGCAGACTA--AGA-AGCA
*
24087782 TCTAGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGCAAAGCA
1 ---AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG--AAGCA
* * *
24087830 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACCGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-CTAAGA-AGCA
* * *
24087875 AATCTTATCTCCCTGAAGTTGCGGTCGAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
24087906 TATTAAAACC
Statistics
Matches: 299, Mismatches: 54, Indels: 71
0.71 0.13 0.17
Matches are distributed among these distances:
40 20 0.07
41 8 0.03
42 5 0.02
43 13 0.04
44 82 0.27
45 112 0.37
46 13 0.04
47 9 0.03
48 10 0.03
49 3 0.01
50 23 0.08
51 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCA
Found at i:24087834 original size:95 final size:95
Alignment explanation
Indices: 24087666--24087857 Score: 330
Period size: 95 Copynumber: 2.0 Consensus size: 95
24087656 ATCTCTCTGA
* * *
24087666 AGTTACAGAGAGCATATCGTATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAA
1 AGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAATTGCAGTGGAACAGACTAAGCAA
24087731 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
66 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
* * *
24087761 AGTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGCAA
1 AGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAATTGCAGTGGAACAGACTAAGCAA
24087826 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
66 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
24087856 AG
1 AG
24087858 GTAGACCGAA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 91 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (95 bp):
AGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAATTGCAGTGGAACAGACTAAGCAA
AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
Found at i:24088035 original size:66 final size:67
Alignment explanation
Indices: 24087873--24088040 Score: 284
Period size: 67 Copynumber: 2.5 Consensus size: 67
24087863 CCGAAGATGG
* *
24087873 CAAATCTTATCTCCCTGAAGTTGCGGTCGAGCATATTAAAACCAACAGTGGAGCGGGTTAAAAAC
1 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAACCAACAGTGGAGCGGGTTAAAAAC
24087938 CT
66 CT
*
24087940 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCAACAGTGGAGCGGG-TAAAAAC
1 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAACCAACAGTGGAGCGGGTTAAAAAC
24088004 CT
66 CT
* *
24088006 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGA
24088041 CTGGTAGATC
Statistics
Matches: 96, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
66 42 0.44
67 54 0.56
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (67 bp):
CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAACCAACAGTGGAGCGGGTTAAAAAC
CT
Found at i:24090042 original size:98 final size:98
Alignment explanation
Indices: 24089921--24090115 Score: 327
Period size: 98 Copynumber: 2.0 Consensus size: 98
24089911 AAAAATCATA
* *
24089921 AAGGAAATTTTCCGAGTTTGGGATTATAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
* *
24089986 AAATCTTGGATAAGCGGATGTTCTTTTAAAGTG
66 AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
* *
24090019 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
24090084 AAATCTTGGATAAGTGAATGTTCCTTTAAAGT
66 AAATCTTGGATAAGCGAATGTTCCTTTAAAGT
24090116 TTTTCATTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
Found at i:24097476 original size:29 final size:29
Alignment explanation
Indices: 24097444--24097655 Score: 230
Period size: 29 Copynumber: 7.3 Consensus size: 29
24097434 AGGATAGTTT
*
24097444 CGACTATCAACTATGAAAAGGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* *
24097473 CGACCATCAACTATGAAAAGCGATGTTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* * **
24097502 CGACCATCAAATATGAAAAGGGATAGTTT
1 CGACCATCAACTATGAAAAGGGATGGTGA
* *
24097531 CGACTATCGACTATGAAAAGGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* * **
24097560 CGACCATCGATTAATGAAAAGGGATGGTTC
1 CGACCATCAACT-ATGAAAAGGGATGGTGA
**
24097590 CGACCATCGAA-TATGAAAAGGGATGGAAA
1 CGACCATC-AACTATGAAAAGGGATGGTGA
* *
24097619 CGACCATCGAA-AATGAAAAGGGATGGTTA
1 CGACCATC-AACTATGAAAAGGGATGGTGA
24097648 CGACCATC
1 CGACCATC
24097656 GTTTAGCATA
Statistics
Matches: 155, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
29 130 0.84
30 24 0.15
31 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (29 bp):
CGACCATCAACTATGAAAAGGGATGGTGA
Found at i:24097517 original size:58 final size:58
Alignment explanation
Indices: 24097444--24097655 Score: 257
Period size: 58 Copynumber: 3.6 Consensus size: 58
24097434 AGGATAGTTT
* * * * *
24097444 CGACTATCAACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGCGATGTTGA
1 CGACCATCAAATATGAAAAGGGATGGTTACGACCATCAACTATGAAAAGGGATGGTGA
* * * *
24097502 CGACCATCAAATATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGATGGTGA
1 CGACCATCAAATATGAAAAGGGATGGTTACGACCATCAACTATGAAAAGGGATGGTGA
* * * **
24097560 CGACCATCGATTAATGAAAAGGGATGGTTCCGACCATCGAA-TATGAAAAGGGATGGAAA
1 CGACCATCAAAT-ATGAAAAGGGATGGTTACGACCATC-AACTATGAAAAGGGATGGTGA
24097619 CGACCATCGAAA-ATGAAAAGGGATGGTTACGACCATC
1 CGACCATC-AAATATGAAAAGGGATGGTTACGACCATC
24097656 GTTTAGCATA
Statistics
Matches: 131, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
58 83 0.63
59 46 0.35
60 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (58 bp):
CGACCATCAAATATGAAAAGGGATGGTTACGACCATCAACTATGAAAAGGGATGGTGA
Found at i:24097628 original size:88 final size:87
Alignment explanation
Indices: 24097444--24097656 Score: 275
Period size: 88 Copynumber: 2.4 Consensus size: 87
24097434 AGGATAGTTT
* *
24097444 CGACTATCAACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGCGATGTTGACGACCAT
1 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGACTATGAAAAGCGATGTTGACGACCAT
***
24097509 CAAATATGAAAAGGGATAGTTT
66 CAAATATGAAAAGGGATAGAAA
* * *
24097531 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGATTAATGAAAAGGGATGGTT-CCGACC
1 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGACT-ATGAAAAGCGAT-GTTGACGACC
* *
24097595 ATCGAATATGAAAAGGGATGGAAA
64 ATCAAATATGAAAAGGGATAGAAA
* ** *
24097619 CGACCATCGAAAATGAAAAGGGATGGTTACGACCATCG
1 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCG
24097657 TTTAGCATAC
Statistics
Matches: 110, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
87 38 0.35
88 69 0.63
89 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (87 bp):
CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGACTATGAAAAGCGATGTTGACGACCAT
CAAATATGAAAAGGGATAGAAA
Found at i:24103065 original size:15 final size:15
Alignment explanation
Indices: 24103045--24103081 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
24103035 AATTGTTCGC
24103045 AGCAATAGTTGGTCT
1 AGCAATAGTTGGTCT
24103060 AGCAATAGTTGGTCT
1 AGCAATAGTTGGTCT
24103075 AGCAATA
1 AGCAATA
24103082 CTTGATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (15 bp):
AGCAATAGTTGGTCT
Found at i:24107518 original size:125 final size:127
Alignment explanation
Indices: 24107341--24107591 Score: 373
Period size: 125 Copynumber: 2.0 Consensus size: 127
24107331 AAATGAAAGG
* * * *
24107341 AGGATGATTTATCAGAAGAATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGTAGGT
1 AGGATGATTTATAAGAAGAATTTTTGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTAGGT
*
24107406 CTTGGAA-AAATAATTTCAACTTGACATTTCTGAGCAAATAGTTT-AAAAAACGCTTCAAGC
66 CCTGGAAGAAATAATTTCAACTTGACATTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
* * *
24107466 AGGATGCTTTATAAGAA-AATTTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAGTTGG
1 AGGATGATTTATAAGAAGAATTTT-TGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTAGG
* * *
24107530 TCCTGGAAGAAATAATTTCAAGTTGACGTTTTTGAGCAAATAGTTTAAAAAAACGCTTCAAG
65 TCCTGGAAGAAATAATTTCAACTTGACATTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAG
24107592 TAGGGGTGGA
Statistics
Matches: 112, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
124 6 0.05
125 57 0.51
126 34 0.30
127 15 0.13
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (127 bp):
AGGATGATTTATAAGAAGAATTTTTGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTAGGT
CCTGGAAGAAATAATTTCAACTTGACATTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
Found at i:24108345 original size:29 final size:29
Alignment explanation
Indices: 24108313--24108369 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
24108303 ATCGTTATGC
*
24108313 ATATATATTATCACTAGTTAAAAATGAAT
1 ATATATATTATCACCAGTTAAAAATGAAT
24108342 ATATATATTATCACCAGTTAAAAATGAA
1 ATATATATTATCACCAGTTAAAAATGAA
24108370 GAAAAGAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (29 bp):
ATATATATTATCACCAGTTAAAAATGAAT
Found at i:24109516 original size:31 final size:30
Alignment explanation
Indices: 24109467--24109525 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
24109457 TTTGTTTAGA
24109467 AAAAAATATATTTTAAAATTATT-AAATAGG
1 AAAAAATATATTTTAAAATT-TTCAAATAGG
*
24109497 AAAAAATATTTTTTAAAAATTTTCAAATA
1 AAAAAATATATTTT-AAAATTTTCAAATA
24109526 ATATAAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (30 bp):
AAAAAATATATTTTAAAATTTTCAAATAGG
Found at i:24111292 original size:21 final size:21
Alignment explanation
Indices: 24111268--24111309 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
24111258 CAGCTTCCAA
* *
24111268 CGGGGGTTGTGGTTGCTCCGG
1 CGGGGATTGTGGTTCCTCCGG
*
24111289 CGGGGATTTTGGTTCCTCCGG
1 CGGGGATTGTGGTTCCTCCGG
24111310 TAGGGTATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.21, G:0.45, T:0.31
Consensus pattern (21 bp):
CGGGGATTGTGGTTCCTCCGG
Found at i:24111591 original size:18 final size:18
Alignment explanation
Indices: 24111565--24111607 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
24111555 GACTCGGAAA
* * *
24111565 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
24111583 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
24111601 AGGATAC
1 AGGATAC
24111608 GCACCTGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:24112761 original size:11 final size:11
Alignment explanation
Indices: 24112742--24112826 Score: 56
Period size: 11 Copynumber: 8.0 Consensus size: 11
24112732 TGATTTAAGA
24112742 GAAATTTGAGAG
1 GAAA-TTGAGAG
24112754 GAAATTGAGAG
1 GAAATTGAGAG
* *
24112765 CAAATTGAGAT
1 GAAATTGAGAG
*
24112776 TAAA-T-AG-G
1 GAAATTGAGAG
*
24112784 G-ATTTGAGA-
1 GAAATTGAGAG
24112793 GAAATTTG-GAAG
1 GAAA-TTGAG-AG
24112805 GAAATTGAGAG
1 GAAATTGAGAG
*
24112816 CAAATTGAGAG
1 GAAATTGAGAG
24112827 AATAATAGAG
Statistics
Matches: 57, Mismatches: 8, Indels: 17
0.70 0.10 0.21
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 5 0.09
10 3 0.05
11 38 0.67
12 9 0.16
ACGTcount: A:0.44, C:0.02, G:0.31, T:0.24
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:24112788 original size:51 final size:51
Alignment explanation
Indices: 24112726--24112825 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
24112716 AATAATTAAA
*
24112726 AAATAGTGATTTAAGAGAAATTT-GAGAGGAAATTGAGAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTGGA-AGGAAATTGAGAGCAAATTGAGATT
*
24112777 AAATAGGGATTTGAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGAGA
24112826 GAATAATAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 44 0.96
52 2 0.04
ACGTcount: A:0.45, C:0.02, G:0.28, T:0.25
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGAGATT
Found at i:24114206 original size:30 final size:30
Alignment explanation
Indices: 24114152--24114208 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
24114142 AATTCAATAA
*
24114152 TTAAATTTTTAATACTTCAAATTTCAACAT
1 TTAAATTTTTAACACTTCAAATTTCAACAT
*
24114182 TTAAATTTTTAGCACTT-AATATTTCAA
1 TTAAATTTTTAACACTTCAA-ATTTCAA
24114209 TTTGTTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (30 bp):
TTAAATTTTTAACACTTCAAATTTCAACAT
Done.