Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 85 of 214
Found at i:24119550 original size:16 final size:17
Alignment explanation
Indices: 24119516--24119556 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 17
24119506 ATTATTTTAA
24119516 ATTTT-ATTAAATCATAT
1 ATTTTAATTAAA-CATAT
24119533 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAACATAT
24119549 A-TTTAATT
1 ATTTTAATT
24119557 TTAATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 7 0.30
16 5 0.22
17 5 0.22
18 6 0.26
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTAATTAAACATAT
Found at i:24119627 original size:66 final size:65
Alignment explanation
Indices: 24119557--24119751 Score: 173
Period size: 66 Copynumber: 3.1 Consensus size: 65
24119547 ATATTTAATT
24119557 TTAATTATTTAAAATTATCTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAAT
1 TTAATTATTTAAAATTAT-TTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAAT
24119622 A
65 A
* * * * **
24119623 TTAATTA-TTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TTAAT
1 TTAATTATTTAA-AATTATTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAAT
24119676 A
65 A
* * *
24119677 ATAATTATGTT-AATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAA
1 TTAATTAT-TTAAAATTAT-TTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAA
24119741 TA
64 TA
*
24119743 TTGATTATT
1 TTAATTATT
24119752 AAGAATTTTA
Statistics
Matches: 98, Mismatches: 16, Indels: 31
0.68 0.11 0.21
Matches are distributed among these distances:
54 13 0.13
55 6 0.06
56 7 0.07
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 5 0.05
65 10 0.10
66 21 0.21
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.50
Consensus pattern (65 bp):
TTAATTATTTAAAATTATTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAATA
Found at i:24119639 original size:120 final size:120
Alignment explanation
Indices: 24119515--24119924 Score: 693
Period size: 120 Copynumber: 3.4 Consensus size: 120
24119505 AATTATTTTA
* * * *
24119515 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATTTTAATTAT-TTAAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT-AATTTATATTT
* *
24119579 TATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
24119635 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAATTTATATTTT
24119700 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
24119755 AATTTTATTAAATTATATATTTTAATTATAATATATTT-A--ATAATTCTGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAATTTATATTTT
24119817 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
24119872 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT
24119925 TAAATATGAT
Statistics
Matches: 275, Mismatches: 11, Indels: 8
0.94 0.04 0.03
Matches are distributed among these distances:
117 114 0.41
118 1 0.00
119 1 0.00
120 157 0.57
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAATTTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:24119675 original size:15 final size:15
Alignment explanation
Indices: 24119640--24119691 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
24119630 TTAAGAATTT
*
24119640 TATTAAATTAT-ATA
1 TATTTAATTATAATA
24119654 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
24119668 TATTTAATAATAAT-
1 TATTTAATTATAATA
24119682 TATGTTAATT
1 TAT-TTAATT
24119692 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:24119901 original size:18 final size:18
Alignment explanation
Indices: 24119873--24119921 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
24119863 ATTATTAAGA
24119873 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
24119890 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
24119906 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
24119922 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:24119907 original size:16 final size:16
Alignment explanation
Indices: 24119873--24119927 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
24119863 ATTATTAAGA
24119873 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
24119890 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
24119906 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
24119920 ATGTTTAA
1 AT-TTTAA
24119928 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:24120137 original size:44 final size:45
Alignment explanation
Indices: 24120072--24120162 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
24120062 ACCTCTATTC
* * *
24120072 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
24120116 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
24120161 CA
1 CA
24120163 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:24120164 original size:16 final size:16
Alignment explanation
Indices: 24120143--24120211 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
24120133 GATTAGCTAT
24120143 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24120159 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
24120176 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24120192 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
24120208 TACA
1 TACA
24120212 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:24120185 original size:33 final size:32
Alignment explanation
Indices: 24120143--24120211 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
24120133 GATTAGCTAT
24120143 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
24120176 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
24120208 TACA
1 TACA
24120212 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:24121012 original size:10 final size:11
Alignment explanation
Indices: 24120989--24121013 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24120979 AAGGTATAGT
24120989 AAAATATTTAA
1 AAAATATTTAA
24121000 AAAATATTTAA
1 AAAATATTTAA
24121011 AAA
1 AAA
24121014 GAAAGAGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATATTTAA
Found at i:24121286 original size:29 final size:30
Alignment explanation
Indices: 24121247--24121306 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
24121237 ATTTTAATTT
*
24121247 AAAATCAAAA-TTAGCAGTAAAATTCAATA
1 AAAATCAAAATTTAGCAGTAAAATCCAATA
* * *
24121276 AAAATGAAAATTTAGTATTAAAATCCAATA
1 AAAATCAAAATTTAGCAGTAAAATCCAATA
24121306 A
1 A
24121307 TATAAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.58, C:0.08, G:0.07, T:0.27
Consensus pattern (30 bp):
AAAATCAAAATTTAGCAGTAAAATCCAATA
Found at i:24125015 original size:22 final size:21
Alignment explanation
Indices: 24124985--24125025 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
24124975 CAAATGTGTT
*
24124985 AAAATTATTAATTAAAAATAAA
1 AAAAATATT-ATTAAAAATAAA
*
24125007 AAAAATATTTTTAAAAATA
1 AAAAATATTATTAAAAATA
24125026 CTAATTACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAAATATTATTAAAAATAAA
Found at i:24130545 original size:70 final size:70
Alignment explanation
Indices: 24130427--24130713 Score: 380
Period size: 70 Copynumber: 4.1 Consensus size: 70
24130417 TTGAATTTGT
* * * *
24130427 GAGCCTTAAAGCTATAGCTGGGAGCTTCAGCTCGCACTTACTAGTTTGGAGGCTGGGGTGTT-AA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
24130491 GCCTAC
66 -CCTAC
* * * * *
24130497 GAGCTTTAAAGCTACAGTTGGGAGCTTCAGCTTACACTAACTAGTTTGGAGGTTGCGGTGTTAAA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
* *
24130562 CTTGC
66 CCTAC
* * * * *
24130567 AAGCCCTAAAGCTACAGCTGGGAGCTTCAACTTGCACTAACTATTTTGGAGGCTGCGGTTTTGAA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
24130632 CCTAC
66 CCTAC
*
24130637 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACT-GTTTTGGAGGCTGTGGTGTTGA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAG-TTTGGAGGCTGCGGTGTTGA
*
24130701 ACCTAT
65 ACCTAC
24130707 GAGCCTT
1 GAGCCTT
24130714 TAGATCACAA
Statistics
Matches: 186, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
70 184 0.99
71 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (70 bp):
GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
CCTAC
Found at i:24130739 original size:70 final size:69
Alignment explanation
Indices: 24130444--24131178 Score: 278
Period size: 71 Copynumber: 10.4 Consensus size: 69
24130434 AAAGCTATAG
* * * * * * *
24130444 CTGGGAG-CTTCAGCTCGCACTTACTAGTTTGGAGGCTGGGGTGTT-AAGCCTACGAGCTTTAAA
1 CTGGGAGCCTT-AGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAA-CCTACGAGCCTTAGA
* *
24130507 GCTACAG
64 TC-ACAA
* * * * * * * * * * * * *
24130514 TTGGGAG-CTTCAGCTTACACTAACTAGTTTGGAGGTTGCGGTGTTAAACTTGCAAGCCCTAAAG
1 CTGGGAGCCTT-AGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAACCTACGAGCCTTAGAT
*
24130578 CTACAG
65 C-ACAA
* * * * *
24130584 CTGGGAG-CTTCAACTTGCACTAACTATTTTGGAGGCTGCGGTTTTGAACCTACGAGCCTTAAAG
1 CTGGGAGCCTT-AGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAACCTACGAGCCTTAGAT
*
24130648 CTACAG
65 C-ACAA
* * *
24130654 CTGGGAG-CTTCAGCTTGCACTAACTGTTTTGGAGGCTGTGGTGTTGAACCTATGAGCCTTTAGA
1 CTGGGAGCCTT-AGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAACCTACGAGCC-TTAGA
24130718 TCACAA
64 TCACAA
* ** * *
24130724 CTGGTG-GCCTTAGCTTTCACTAACTATTTTCAGG-GATTGTGGTACTGAACCTACGAGCCCTAA
1 CTGG-GAGCCTTAGCTTGCACTAACTATTTT--GGAGGCTGTGGTATTGAACCTACGAG-CCTTA
24130787 GATCACAA
62 GATCACAA
** * *** * * *
24130795 CTGGGAGCCTTAGC-T-CTAGCTAACTATTTTTAAGGGTTGTAAAATTGAACTTGCGAGCCCTAA
1 CTGGGAGCCTTAGCTTGC-A-CTAACTATTTTGGA-GGCTGTGGTATTGAACCTACGAG-CCTTA
*
24130858 GATCACAG
62 GATCACAA
* * * * * * * ** *
24130866 TTGGGAGCCTTAGCTCT-CTCTAACTATTTTTGAGGTTTGTAGAATTGAACTTGTGAGCCCTAAG
1 CTGGGAGCCTTAGCT-TGCACTAACTATTTTGGAGG-CTGTGGTATTGAACCTACGAG-CCTTAG
*
24130930 ATCACAG
63 ATCACAA
* * * * * * * * * *
24130937 TTAGGAGCCTTAGCACT-CTCTAACTATTTTTGAGG-GGTTACGGTATTGAATCAATGAGACCTA
1 CTGGGAGCCTTAGC-TTGCACTAACTATTTTGGAGGCTG-T--GGTATTGAACCTACGAG-CCTT
*
24131000 AGATCATAA
61 AGATCACAA
* ** * * * *
24131009 CTGGGAGCTTTAGCTCT-CTTTAACTATTTTTGGGGGCTGCGGTATTGAACCTGCGAGCCCTAAG
1 CTGGGAGCCTTAGCT-TGCACTAACTA-TTTTGGAGGCTGTGGTATTGAACCTACGAG-CCTTAG
*
24131073 ATCACAG
63 ATCACAA
* * * * * * ** *
24131080 TTGGGAGCCTTAGC-T-CTCTAACTATTATTGGGGGCTGCGGTATTAAACTTGTGAGCTCTAAGA
1 CTGGGAGCCTTAGCTTGCACTAACTATT-TTGGAGGCTGTGGTATTGAACCTACGAGC-CTTAGA
*
24131143 TCATAA
64 TCACAA
* *
24131149 CTGGGAGTCTTAGCTCT-CTCTAACTATTTT
1 CTGGGAGCCTTAGCT-TGCACTAACTATTTT
24131179 TTTGAGAAAG
Statistics
Matches: 548, Mismatches: 91, Indels: 52
0.79 0.13 0.08
Matches are distributed among these distances:
68 3 0.01
69 58 0.11
70 201 0.37
71 230 0.42
72 46 0.08
73 9 0.02
74 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (69 bp):
CTGGGAGCCTTAGCTTGCACTAACTATTTTGGAGGCTGTGGTATTGAACCTACGAGCCTTAGATC
ACAA
Found at i:24131037 original size:143 final size:139
Alignment explanation
Indices: 24130853--24131179 Score: 397
Period size: 143 Copynumber: 2.3 Consensus size: 139
24130843 ACTTGCGAGC
* ** * ** * *
24130853 CCTAAGATCACAGTTGGGAGCCTTAGCTCTCTCTAACTATTTTTGAGGTTTGTAGAATTGAACTT
1 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTCTAACTATTTTTGAGGGCTGCAGAATTGAACCT
* * *
24130918 GTGAGCCCTAAGATCACAGTTAGGAGCCTTAGCACTCTCTAACTATTTTTGAGGGGTTACGGTAT
66 GCGAGCCCTAAGATCACAGTTAGGAGCCTTAG--CTCTCTAACTATTATTG-GGGGCTACGGTAT
*
24130983 TGAATCAATGAGA-
128 T-AAAC-ATGAGAG
* * * *
24130996 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTTTAACTATTTTTGGGGGCTGCGGTATTGAACCT
1 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTCTAACTATTTTTGAGGGCTGCAGAATTGAACCT
* *
24131061 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGCTCTCTAACTATTATTGGGGGCTGCGGTATTAA
66 GCGAGCCCTAAGATCACAGTTAGGAGCCTTAGCTCTCTAACTATTATTGGGGGCTACGGTATTAA
* *
24131126 ACTTGTGAG
131 ACATGAGAG
24131135 CTCTAAGATCATAACTGGGAG-TCTTAGCTCTCTCTAACTATTTTT
1 C-CTAAGATCATAACTGGGAGCT-TTAGCTCTCTCTAACTATTTTT
24131180 TTGAGAAAGG
Statistics
Matches: 160, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
138 4 0.03
139 5 0.03
140 52 0.32
141 16 0.10
143 83 0.52
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (139 bp):
CCTAAGATCATAACTGGGAGCTTTAGCTCTCTCTAACTATTTTTGAGGGCTGCAGAATTGAACCT
GCGAGCCCTAAGATCACAGTTAGGAGCCTTAGCTCTCTAACTATTATTGGGGGCTACGGTATTAA
ACATGAGAG
Found at i:24131184 original size:214 final size:213
Alignment explanation
Indices: 24130782--24131179 Score: 528
Period size: 214 Copynumber: 1.9 Consensus size: 213
24130772 ACCTACGAGC
* * *
24130782 CCTAAGATCACAACTGGGAGCCTTAGCTCTAGCTAACTATTTTTAAGGGTTGTAAAATTGAACTT
1 CCTAAGATCACAACTGGGAGCCTTAGCTCTAGCTAACTATTTTTAAGGGCTGCAAAATTGAACCT
* ** *
24130847 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGCTCTCTCTAACTATTTTTGAGGTTTGTAGAATT
66 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGC-CTCTCTAACTATTATTGAGGGCTGCAGAATT
* **
24130912 GAACTTGTGAGCCCTAAGATCACAGTTAGGAGCCTTAGCACTCTCTAACTATTTTTGAGGGGTTA
130 AAACTTGTGAGCCCTAAGATCACAACTAGGAGCCTTAGCACTCTCTAACTATTTTTGAGGGGTTA
24130977 CGGTATTGAATCAATGAGA
195 CGGTATTGAATCAATGAGA
* * *** ** ***
24130996 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTTTAACTATTTTTGGGGGCTGCGGTATTGAACCT
1 CCTAAGATCACAACTGGGAGCCTTAGCTCTAGCTAACTATTTTTAAGGGCTGCAAAATTGAACCT
* * *
24131061 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAG-CTCTCTAACTATTATTGGGGGCTGCGGTATTA
66 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGCCTCTCTAACTATTATTGAGGGCTGCAGAATTA
* * * * *
24131125 AACTTGTGAGCTCTAAGATCATAACTGGGAGTCTTAGCTCTCTCTAACTATTTTT
131 AACTTGTGAGCCCTAAGATCACAACTAGGAGCCTTAGCACTCTCTAACTATTTTT
24131180 TTGAGAAAGG
Statistics
Matches: 156, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
212 72 0.46
214 84 0.54
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (213 bp):
CCTAAGATCACAACTGGGAGCCTTAGCTCTAGCTAACTATTTTTAAGGGCTGCAAAATTGAACCT
GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGCCTCTCTAACTATTATTGAGGGCTGCAGAATTA
AACTTGTGAGCCCTAAGATCACAACTAGGAGCCTTAGCACTCTCTAACTATTTTTGAGGGGTTAC
GGTATTGAATCAATGAGA
Found at i:24138364 original size:18 final size:17
Alignment explanation
Indices: 24138331--24138368 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
24138321 TTAAATGTAA
24138331 TTTAAATACAACTTTTT
1 TTTAAATACAACTTTTT
24138348 TTTAATATACGAA-TTTTT
1 TTTAA-ATAC-AACTTTTT
24138366 TTT
1 TTT
24138369 TGAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 12 0.63
19 2 0.11
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (17 bp):
TTTAAATACAACTTTTT
Found at i:24147035 original size:50 final size:50
Alignment explanation
Indices: 24146932--24147124 Score: 161
Period size: 50 Copynumber: 3.7 Consensus size: 50
24146922 TTTCTTGTTC
* * * * * * ** * *
24146932 TGCCAATGTCATATCCTAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
* * * *
24146982 TGCCCATGCCATGTTCCAAACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
* * * *
24147032 TGCCAACGCCATGTCCCAGACGTGGTCTTACATGGGACCTATCATAACCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAT---CTC-A-G
*
24147087 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA
24147125 TTTCTTTATC
Statistics
Matches: 113, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
50 73 0.65
53 3 0.03
54 1 0.01
55 1 0.01
56 35 0.31
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
Found at i:24154183 original size:50 final size:48
Alignment explanation
Indices: 24154059--24154247 Score: 191
Period size: 50 Copynumber: 3.8 Consensus size: 48
24154049 GATAATAACA
* * *
24154059 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-TTTCATAT-CG
* * * *
24154108 AGCCAATGCCATCTCCCATATATGGTCTTACATGGGAGTTTTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TTTTCATATC-G
* ** ** *
24154158 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCATTCATCTCG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TTTTCATATCG
*
24154207 TTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATTT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTT
24154248 CTTTATCCAA
Statistics
Matches: 112, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
48 1 0.01
49 40 0.36
50 71 0.63
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTTTCATATCG
Found at i:24158722 original size:21 final size:20
Alignment explanation
Indices: 24158693--24158738 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
24158683 CGAAATGCAA
24158693 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
24158714 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
24158734 T-AACC
1 TCAACC
24158739 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:24160181 original size:30 final size:30
Alignment explanation
Indices: 24160097--24160174 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
24160087 TTATTGAAAT
*
24160097 GTGGAAGCCTTTGTGGTTGTTCTCTGATAA
1 GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
24160127 GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
1 GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
*
24160157 GTGGAAGGCTTTGTGGCT
1 GTGGAAGCCTTTGTGGCT
24160175 AATCTCTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.15, C:0.14, G:0.33, T:0.37
Consensus pattern (30 bp):
GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
Found at i:24160257 original size:29 final size:29
Alignment explanation
Indices: 24160167--24160258 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
24160157 GTGGAAGGCT
*
24160167 TTGTGGC-TAATCTCTTATATGTGAGCCC
1 TTGTGGCATAATCTATTATATGTGAGCCC
** *
24160195 TTGTCACATAATCTGTTATATGTGAGCCC
1 TTGTGGCATAATCTATTATATGTGAGCCC
** *
24160224 TTGTGGTGTAATCTATTATATGTGAGCCA
1 TTGTGGCATAATCTATTATATGTGAGCCC
24160253 TTGTGG
1 TTGTGG
24160259 AAGAATATGT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 5 0.09
29 49 0.91
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (29 bp):
TTGTGGCATAATCTATTATATGTGAGCCC
Found at i:24166427 original size:36 final size:37
Alignment explanation
Indices: 24166387--24166459 Score: 85
Period size: 37 Copynumber: 2.0 Consensus size: 37
24166377 TCAAAAACCT
*
24166387 GCAAAGCAAACACTCAA-CACTCAAAAAGAAAAATTA
1 GCAAACCAAACACTCAATCACTCAAAAAGAAAAATTA
** ** *
24166423 GCAAACCTTACTGTTAATCACTCAAAAAGAAAAATTA
1 GCAAACCAAACACTCAATCACTCAAAAAGAAAAATTA
24166460 AATTCTCAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
36 11 0.37
37 19 0.63
ACGTcount: A:0.53, C:0.21, G:0.08, T:0.18
Consensus pattern (37 bp):
GCAAACCAAACACTCAATCACTCAAAAAGAAAAATTA
Found at i:24171342 original size:22 final size:21
Alignment explanation
Indices: 24171314--24171360 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
24171304 AGGACGAGGC
*
24171314 TATGTGGCAGTTTAACTGCAAT
1 TATGTGGCAG-TTAACGGCAAT
* *
24171336 TATGTGGCCGTTATCGGCAAT
1 TATGTGGCAGTTAACGGCAAT
24171357 TATG
1 TATG
24171361 GTGTGGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (21 bp):
TATGTGGCAGTTAACGGCAAT
Found at i:24176595 original size:27 final size:27
Alignment explanation
Indices: 24176564--24176741 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24176554 TAAATTGTAC
24176564 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24176591 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24176617 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24176645 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24176673 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24176700 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24176727 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24176742 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24176678 original size:82 final size:81
Alignment explanation
Indices: 24176565--24176720 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24176555 AAATTGTACA
* *
24176565 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
24176629 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24176646 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
24176711 TGCGAGTTGA
65 TGCGAATTGA
24176721 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24176732 original size:82 final size:81
Alignment explanation
Indices: 24176561--24176741 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
24176551 GATTAAATTG
* *
24176561 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24176626 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
24176642 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24176706 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24176724 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
24176742 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24179687 original size:30 final size:30
Alignment explanation
Indices: 24179653--24179770 Score: 173
Period size: 30 Copynumber: 3.9 Consensus size: 30
24179643 AATCAGTCTA
* *
24179653 GGCCATAGCCCTATACAGTAGCAGTGTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTGTG
*
24179683 GGCCATAGCCCAATACAGTAACAGAGTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTGTG
* *
24179713 GGCCTTAGCCCAATACAGTAACAGTCTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTGTG
* *
24179743 GGCCTTAGTCCAATACAGTAACAGTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTG
24179771 GCCTTAGCCT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 80 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (30 bp):
GGCCATAGCCCAATACAGTAACAGTGTGTG
Found at i:24179937 original size:26 final size:26
Alignment explanation
Indices: 24179908--24180004 Score: 86
Period size: 26 Copynumber: 3.7 Consensus size: 26
24179898 ATATCGTAGT
*
24179908 AAAGCTGCCAGTATCAGTAACGCAGC
1 AAAGCTGCCAGTAACAGTAACGCAGC
* * **
24179934 AAAGTTACCAGTAACAGTAACGGGGC
1 AAAGCTGCCAGTAACAGTAACGCAGC
* * * ** * *
24179960 AGAGTTGCTAGTCTCAGTATCGCACC
1 AAAGCTGCCAGTAACAGTAACGCAGC
24179986 AAAGCTGCCAGTAACAGTA
1 AAAGCTGCCAGTAACAGTA
24180005 TTTGTGGCAA
Statistics
Matches: 52, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.19
Consensus pattern (26 bp):
AAAGCTGCCAGTAACAGTAACGCAGC
Found at i:24180229 original size:27 final size:27
Alignment explanation
Indices: 24180199--24180364 Score: 149
Period size: 27 Copynumber: 6.2 Consensus size: 27
24180189 TATAACGGTC
*
24180199 ATTTTACCCTTCGAGGGTATTTCAAAA
1 ATTTTACCCTTCGAGGGTATTTCAATA
* * *
24180226 ATTTTACCCTTTGGGGGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTCAATA
* *
24180253 ATTTTACCTTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCAATA
* * ***
24180280 ATTTTACCCTTTGGGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCAATA
* * *
24180307 A-TTTACCTTTTG-GGAGTATTTCGATA
1 ATTTTACCCTTCGAGG-GTATTTCAATA
**
24180333 ATTTTACCCTTCG-GGGATATTTCGGTA
1 ATTTTACCCTTCGAGGG-TATTTCAATA
24180360 ATTTT
1 ATTTT
24180365 CCCACGAATC
Statistics
Matches: 116, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
25 2 0.02
26 21 0.18
27 93 0.80
ACGTcount: A:0.21, C:0.14, G:0.20, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCAATA
Found at i:24180268 original size:54 final size:54
Alignment explanation
Indices: 24180194--24180364 Score: 238
Period size: 54 Copynumber: 3.2 Consensus size: 54
24180184 TAGGGTATAA
* * * *
24180194 CGGTCATTTTACCCTTCGAGGGTATTTCAAAAATTTTACCCTTTGGGGGTATTT
1 CGGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTT
*
24180248 CAGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTT
1 CGGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTT
* * * *
24180302 TGGTAA-TTTACCTTTTG-GGAGTATTTCGATAATTTTACCCTTCGGGGATATTT
1 CGGTAATTTTACCTTTCGAGG-GTATTTCGATAATTTTACCCTTTGGGGGTATTT
24180355 CGGTAATTTT
1 CGGTAATTTT
24180365 CCCACGAATC
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
52 2 0.02
53 46 0.44
54 56 0.54
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.44
Consensus pattern (54 bp):
CGGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTT
Found at i:24180335 original size:53 final size:53
Alignment explanation
Indices: 24180201--24180363 Score: 229
Period size: 53 Copynumber: 3.1 Consensus size: 53
24180191 TAACGGTCAT
* * * *
24180201 TTTACCCTTCGAGGGTATTTCAAAAATTTTACCCTTTGGGGGTATTTCAGTAA
1 TTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTCGGTAA
*
24180254 TTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTTGGTAA
1 -TTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTCGGTAA
* * *
24180308 TTTACCTTTTG-GGAGTATTTCGATAATTTTACCCTTCGGGGATATTTCGGTAA
1 TTTACCTTTCGAGG-GTATTTCGATAATTTTACCCTTTGGGGGTATTTCGGTAA
24180361 TTT
1 TTT
24180364 TCCCACGAAT
Statistics
Matches: 99, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
52 2 0.02
53 49 0.49
54 48 0.48
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (53 bp):
TTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTCGGTAA
Found at i:24183534 original size:133 final size:133
Alignment explanation
Indices: 24183296--24183562 Score: 534
Period size: 133 Copynumber: 2.0 Consensus size: 133
24183286 TTTTCTTAAA
24183296 ACAATGAAGTTCCCCGATCTAATGGAGGAATGTTCAGTGATGAAGGAGTTAGAAACCTTAGTTTC
1 ACAATGAAGTTCCCCGATCTAATGGAGGAATGTTCAGTGATGAAGGAGTTAGAAACCTTAGTTTC
24183361 TATGAAATGGGAGAACAATTTTGTAGAGGACCTGTTAGAGAACACCTTAGGGTCTAAGCCATTAG
66 TATGAAATGGGAGAACAATTTTGTAGAGGACCTGTTAGAGAACACCTTAGGGTCTAAGCCATTAG
24183426 AAG
131 AAG
24183429 ACAATGAAGTTCCCCGATCTAATGGAGGAATGTTCAGTGATGAAGGAGTTAGAAACCTTAGTTTC
1 ACAATGAAGTTCCCCGATCTAATGGAGGAATGTTCAGTGATGAAGGAGTTAGAAACCTTAGTTTC
24183494 TATGAAATGGGAGAACAATTTTGTAGAGGACCTGTTAGAGAACACCTTAGGGTCTAAGCCATTAG
66 TATGAAATGGGAGAACAATTTTGTAGAGGACCTGTTAGAGAACACCTTAGGGTCTAAGCCATTAG
24183559 AAG
131 AAG
24183562 A
1 A
24183563 TGAAGAAGGT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 134 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.26
Consensus pattern (133 bp):
ACAATGAAGTTCCCCGATCTAATGGAGGAATGTTCAGTGATGAAGGAGTTAGAAACCTTAGTTTC
TATGAAATGGGAGAACAATTTTGTAGAGGACCTGTTAGAGAACACCTTAGGGTCTAAGCCATTAG
AAG
Found at i:24185407 original size:30 final size:30
Alignment explanation
Indices: 24185373--24185433 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
24185363 AATTTAATTA
24185373 TGCCTTAATTACTTGTCTAAATGTCTTGTG
1 TGCCTTAATTACTTGTCTAAATGTCTTGTG
24185403 TGCCTTAATTACTTGTCTAAATGTCTTGTG
1 TGCCTTAATTACTTGTCTAAATGTCTTGTG
24185433 T
1 T
24185434 ATGTCATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (30 bp):
TGCCTTAATTACTTGTCTAAATGTCTTGTG
Found at i:24186601 original size:27 final size:27
Alignment explanation
Indices: 24186558--24186621 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
24186548 AGCAGAGCTG
24186558 CCAGTAA-AGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
*
24186584 CCAGTAACAGTA-ACTGTGGCAGAGCCA
1 CCAGTAACAGTATA-TGTGGCAAAGCCA
24186611 CCAG-AACAGTA
1 CCAGTAACAGTA
24186622 CTTCCTCCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
26 15 0.43
27 20 0.57
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAAGCCA
Found at i:24186811 original size:27 final size:27
Alignment explanation
Indices: 24186781--24186878 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
24186771 TAACTATCGG
*
24186781 GGGTATTTCGGTAATTTTACCCATTAA
1 GGGTATTTCGATAATTTTACCCATTAA
* * **
24186808 GGGTAATACGATAATTTTACCCATCGA
1 GGGTATTTCGATAATTTTACCCATTAA
* * *
24186835 GGTTATTTCAATAATTTTACCCATTAG
1 GGGTATTTCGATAATTTTACCCATTAA
* *
24186862 GGGTATTTTGGTAATTT
1 GGGTATTTCGATAATTT
24186879 GCCCACGAAT
Statistics
Matches: 55, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACCCATTAA
Found at i:24186878 original size:54 final size:54
Alignment explanation
Indices: 24186754--24186866 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
24186744 ACCCTAACGG
* * * * **
24186754 GGGTATTACAATAATTTTAACTATCGGGGGTATTTCGGTAATTTTACCCATTAA
1 GGGTAATACGATAATTTTAACCATCGAGGGTATTTCAATAATTTTACCCATTAA
* * *
24186808 GGGTAATACGATAATTTTACCCATCGAGGTTATTTCAATAATTTTACCCATTAG
1 GGGTAATACGATAATTTTAACCATCGAGGGTATTTCAATAATTTTACCCATTAA
24186862 GGGTA
1 GGGTA
24186867 TTTTGGTAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (54 bp):
GGGTAATACGATAATTTTAACCATCGAGGGTATTTCAATAATTTTACCCATTAA
Found at i:24201258 original size:12 final size:13
Alignment explanation
Indices: 24201234--24201262 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
24201224 AGGCTATAAC
24201234 TATTGCATTTATT
1 TATTGCATTTATT
24201247 TATTGC-TTTATT
1 TATTGCATTTATT
24201259 TATT
1 TATT
24201263 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:24221095 original size:16 final size:16
Alignment explanation
Indices: 24221074--24221104 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24221064 TCCCAATCCC
*
24221074 ATGCAGTATGTCATGA
1 ATGCAGTATGCCATGA
24221090 ATGCAGTATGCCATG
1 ATGCAGTATGCCATG
24221105 CTTAGAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGTATGCCATGA
Found at i:24236845 original size:49 final size:49
Alignment explanation
Indices: 24236764--24236873 Score: 121
Period size: 49 Copynumber: 2.2 Consensus size: 49
24236754 AATGGAGGAA
* * * * * * *
24236764 GTATCTGGCAGTAAATTTGCACTATCTGGTGGCTTGTCCACCATATTTT
1 GTATTTGGCAGTAAATTTACACTATCTAGTGGCTAGACCACAATATTCT
* *
24236813 GTATTTGGCAGTGAATTTACATTATCTAGTGGCTAGACCACAATATTCT
1 GTATTTGGCAGTAAATTTACACTATCTAGTGGCTAGACCACAATATTCT
* *
24236862 ATTTTTGGCAGT
1 GTATTTGGCAGT
24236874 TCGACTCCAC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (49 bp):
GTATTTGGCAGTAAATTTACACTATCTAGTGGCTAGACCACAATATTCT
Found at i:24237329 original size:19 final size:20
Alignment explanation
Indices: 24237285--24237330 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
24237275 ATGTTTATTT
* * *
24237285 ACTTTGGACTTTGGTTTTGG
1 ACTTTGGACTTTGCTCTTAG
24237305 AC-TTGGACTTT-CTCTTAG
1 ACTTTGGACTTTGCTCTTAG
24237323 ACTTTGGA
1 ACTTTGGA
24237331 TTTATTCTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 6 0.27
19 14 0.64
20 2 0.09
ACGTcount: A:0.15, C:0.15, G:0.24, T:0.46
Consensus pattern (20 bp):
ACTTTGGACTTTGCTCTTAG
Found at i:24237509 original size:23 final size:21
Alignment explanation
Indices: 24237454--24237493 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
24237444 ACAATCATAG
24237454 TGTTTTC-AAACTCAACACTC
1 TGTTTTCAAAACTCAACACTC
24237474 TGTTTTCAAAACTCAACACT
1 TGTTTTCAAAACTCAACACT
24237494 ACTTGTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.35
Consensus pattern (21 bp):
TGTTTTCAAAACTCAACACTC
Found at i:24244405 original size:80 final size:79
Alignment explanation
Indices: 24244321--24244492 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 79
24244311 GGACTAAGAT
*
24244321 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAG-CCCTGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGTCCC-GAAGG-CATTGTGCGAGATAC
* *
24244384 TAAATCCGGGTTAAGTC
63 TAAAACCGGGCTAAGTC
* * * * * *
24244401 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAA
*
24244466 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
24244480 CCGAAGGCATTTG
1 CCGAAGGCATTTG
24244493 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 38 0.48
80 35 0.44
81 6 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:24244472 original size:39 final size:39
Alignment explanation
Indices: 24244321--24244490 Score: 200
Period size: 40 Copynumber: 4.3 Consensus size: 39
24244311 GGACTAAGAT
24244321 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAG-C
1 CCGAAGGCA-TTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
24244360 CCTGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CC-GAAGG-CATTGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
24244401 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
24244441 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
24244480 CCGAAGGCATT
1 CCGAAGGCATT
24244491 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
39 40 0.34
40 70 0.60
41 7 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:24251843 original size:40 final size:38
Alignment explanation
Indices: 24251793--24252016 Score: 207
Period size: 40 Copynumber: 5.7 Consensus size: 38
24251783 TTGAATGCTG
* * *
24251793 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAA
*
24251833 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGG-CTTTGTGCGAG-TACTAAA
* *
24251873 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAA
* * **
24251912 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAG-TACTAAA
* * * *
24251952 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAA
* *
24251991 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
24252017 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 71 0.45
40 76 0.48
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (38 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTACTAAA
Found at i:24251909 original size:39 final size:39
Alignment explanation
Indices: 24251793--24252014 Score: 248
Period size: 39 Copynumber: 5.6 Consensus size: 39
24251783 TTGAATGCTG
* * * * *
24251793 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
24251833 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
24251873 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* **
24251912 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * *
24251952 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
24251991 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
24252015 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
39 76 0.47
40 75 0.47
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:24251952 original size:79 final size:79
Alignment explanation
Indices: 24251793--24252014 Score: 266
Period size: 79 Copynumber: 2.8 Consensus size: 79
24251783 TTGAATGCTG
* * * * * * * *
24251793 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
24251857 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
*
24251873 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTCG
* **
24251938 TGCGAGTTGTTAAA
66 TGCGAGATACTAAA
* * * *
24251952 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATT
24252015 TGAACGAGGA
Statistics
Matches: 123, Mismatches: 18, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
78 1 0.01
79 96 0.78
80 26 0.21
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:24252034 original size:79 final size:79
Alignment explanation
Indices: 24251868--24252049 Score: 240
Period size: 79 Copynumber: 2.3 Consensus size: 79
24251858 GTGCGAGATA
* *
24251868 CTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** **
24251933 ATTCGTGCGAGTTG
66 ATTCGAACGAGGAG
* * * *
24251947 TTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
*
24252012 ATTTGAACGAGGAG
66 ATTCGAACGAGGAG
* *
24252026 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
24252050 TACGTGATTT
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
78 14 0.16
79 74 0.84
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAG
Found at i:24260603 original size:40 final size:40
Alignment explanation
Indices: 24260548--24260768 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
24260538 TATTCGAATG
* *
24260548 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
24260588 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
24260628 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
24260668 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* *
24260708 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT--TCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAT-T
*
24260747 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
24260769 TACTTGGGTT
Statistics
Matches: 164, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 14 0.09
39 7 0.04
40 143 0.87
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:24269119 original size:40 final size:40
Alignment explanation
Indices: 24269023--24269243 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
24269013 TATTCGAATG
* * *
24269023 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
24269063 A-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
*
24269102 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
24269142 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* * *
24269182 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGATT
*
24269222 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
24269244 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 50 0.30
40 114 0.68
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
Found at i:24274864 original size:47 final size:46
Alignment explanation
Indices: 24274764--24274893 Score: 134
Period size: 47 Copynumber: 2.8 Consensus size: 46
24274754 GTACGAATAG
* * * ** *
24274764 TACCTTGATTTGGCTACGGCCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGG-GCATGGTATAGGTACTCCGAGAGAAGT
* *
24274811 TACCTTGATTTGGCTACGGGTCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGG-CATGGTATAGGTACTCCGAGAGAAGT
* **
24274858 TCCCTTGATTTGGCTATAGGCAATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGC-ATGGTATAGGTACT
24274894 TATCTATTGC
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 1 0.01
47 69 0.99
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (46 bp):
TACCTTGATTTGGCTACGGGCATGGTATAGGTACTCCGAGAGAAGT
Found at i:24280290 original size:40 final size:40
Alignment explanation
Indices: 24280206--24280427 Score: 229
Period size: 40 Copynumber: 5.5 Consensus size: 40
24280196 TTGAATGCTG
* * *
24280206 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** *
24280245 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
24280286 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
24280326 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
**
24280367 TCCGGGTTAAGTCCCGAAGGCA-TTGTATGAGTTACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
24280405 AACCGGGCTATGTCCCGAAGGCA
1 -TCCGGGTTAAGTCCCGAAGGCA
24280428 CTTGAACGAG
Statistics
Matches: 156, Mismatches: 20, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 20 0.13
40 101 0.65
41 34 0.22
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:24280420 original size:120 final size:119
Alignment explanation
Indices: 24280206--24280426 Score: 261
Period size: 120 Copynumber: 1.8 Consensus size: 119
24280196 TTGAATGCTG
* *
24280206 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* *
24280271 GTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
66 GTACGAGTTATTAA-TCCGGGCTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
* * * **
24280326 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAGTGACT-AAATCCGGACTAAGAT-CCGAAGGCA
* *
24280389 -TTGTATGAGTTACTATAA-CCGGGCTATGTCCCGAAGGC
63 TTTGTACGAGTTA-T-TAATCCGGGCTAAGTCCCGAAGGC
24280427 ACTTGAACGA
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
120 55 0.65
121 27 0.32
122 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTATTAATCCGGGCTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
Found at i:24282815 original size:38 final size:39
Alignment explanation
Indices: 24282720--24282881 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
24282710 GGACTTTAGC
* * * * *
24282720 CCGGACATATTTCTAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
24282759 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
24282798 -CGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
24282836 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
24282875 TCGGATA
1 CCGGATA
24282882 AACATCACTG
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.32
39 78 0.68
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:24282824 original size:77 final size:78
Alignment explanation
Indices: 24282734--24282881 Score: 253
Period size: 77 Copynumber: 1.9 Consensus size: 78
24282724 ACATATTTCT
* * * *
24282734 AGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAG-T
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTT
24282798 CGGATATAATTCC
66 CGGATATAATTCC
24282811 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTT
1 AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTT
24282876 CGGATA
66 CGGATA
24282882 AACATCACTG
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
77 59 0.89
78 7 0.11
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (78 bp):
AGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTT
CGGATATAATTCC
Found at i:24285560 original size:20 final size:20
Alignment explanation
Indices: 24285535--24285575 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
24285525 AGTCATTGGT
24285535 CACCCTTAAACAATCATACA
1 CACCCTTAAACAATCATACA
24285555 CACCCTTAAACAATCATACA
1 CACCCTTAAACAATCATACA
24285575 C
1 C
24285576 TTCCATATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.20
Consensus pattern (20 bp):
CACCCTTAAACAATCATACA
Found at i:24293818 original size:44 final size:42
Alignment explanation
Indices: 24293714--24293837 Score: 169
Period size: 42 Copynumber: 2.9 Consensus size: 42
24293704 CGGAAAGCAT
* *
24293714 ATACAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAA
* *
24293756 ATACGATGCCAATGTCCCAGACGTAGTCTCACACGTAAATC-A
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCAA
*
24293798 TTAGTCGATGCCAATGTCCCAGACGTGGTCTTACACGAAA
1 ATA--CGATGCCAATGTCCCAGACGTGGTCTTACACGAAA
24293838 AAACATATCA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 34 0.47
43 8 0.11
44 30 0.42
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAA
Found at i:24311401 original size:40 final size:39
Alignment explanation
Indices: 24311364--24311540 Score: 196
Period size: 40 Copynumber: 4.5 Consensus size: 39
24311354 ATATCCGGAC
24311364 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
24311404 TAAGCCCTGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAGTCC-GAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
24311444 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * * *
24311484 TATGTCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
24311522 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
24311541 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 24 0.20
39 20 0.17
40 70 0.59
41 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:24311534 original size:78 final size:80
Alignment explanation
Indices: 24311370--24311538 Score: 209
Period size: 78 Copynumber: 2.1 Consensus size: 80
24311360 GGACTAAGAT
* *
24311370 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCCCTGAAGGCCTTTGTGCGAGATACTA
1 CCGAAGGCATTCGTGCGAGATACAAATTCCGGGTTAAGCCCTGAAGGCCATTGTGCGAGATACTA
* *
24311435 AATCCGGGTTAAGTC
66 AAACCGGGCTAAGTC
* * * * * *
24311450 CCGAAGGCATTCGTGCGAGTTATTAAA-TCCGGGTTATGTCC-GAAGG-CATTGTGTGAGTTACT
1 CCGAAGGCATTCGTGCGAGATA-CAAATTCCGGGTTAAGCCCTGAAGGCCATTGTGCGAGATACT
*
24311512 AAAACCGGGCTATGTC
65 AAAACCGGGCTAAGTC
24311528 CCGAAGGCATT
1 CCGAAGGCATT
24311539 TGAACGAGGA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 37 0.48
79 5 0.06
80 32 0.42
81 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGATACAAATTCCGGGTTAAGCCCTGAAGGCCATTGTGCGAGATACTA
AAACCGGGCTAAGTC
Found at i:24318334 original size:137 final size:141
Alignment explanation
Indices: 24318105--24318382 Score: 528
Period size: 138 Copynumber: 2.0 Consensus size: 141
24318095 GAGGCATGAG
24318105 GATGAGTTAAGATTCGGCCTAGGTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTT
1 GATGAGTTAAGATTCGGCCTAGGTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTT
24318170 GTTAATGATACATGTGATGATGGCTTGATGATTCTTGAA-CTCCTTTTTAGCATTTTTGTGTGAG
66 GTTAATGATACATGTGATGATGGCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTGTGTGAG
24318234 CACATATGTGC
131 CACATATGTGC
24318245 GATGAGTT-AGATTCGG-CTAGGTGGAGGTTGTGTTAATGCCATTGCATGC-AAATATGAAGCTT
1 GATGAGTTAAGATTCGGCCTAGGTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTT
24318307 GTTAATGATACATGTGATGATGGCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTGTGTGAG
66 GTTAATGATACATGTGATGATGGCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTGTGTGAG
24318372 CACATATGTGC
131 CACATATGTGC
24318383 ATTGGTTGCT
Statistics
Matches: 137, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
137 52 0.38
138 69 0.50
139 8 0.06
140 8 0.06
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (141 bp):
GATGAGTTAAGATTCGGCCTAGGTGGAGGTTGTGTTAATGCCATTGCATGCAAAATATGAAGCTT
GTTAATGATACATGTGATGATGGCTTGATGATTCTTGAACCTCCTTTTTAGCATTTTTGTGTGAG
CACATATGTGC
Found at i:24319112 original size:80 final size:79
Alignment explanation
Indices: 24319028--24319199 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
24319018 GGACTAAGAT
*
24319028 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
24319092 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
24319108 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
24319173 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
24319187 CCGAAGGCATTTG
1 CCGAAGGCATTTG
24319200 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:24319179 original size:39 final size:39
Alignment explanation
Indices: 24318975--24319197 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
24318965 TTGAATGCTG
* * * * *
24318975 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
24319015 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
24319054 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
24319095 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
24319135 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
24319174 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
24319198 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:24319217 original size:79 final size:80
Alignment explanation
Indices: 24319055--24319232 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
24319045 AGATACAAAT
* * * *
24319055 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
24319120 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
24319135 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
24319199 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
24319214 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24319233 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:24321027 original size:21 final size:21
Alignment explanation
Indices: 24321002--24321057 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
24320992 CAACACTTTC
*
24321002 CTTTTTTTTTCAATAACTTCAA
1 CTTTTTTTTTCAATAACGT-AA
**
24321024 -TTTTTTTTT-AATTTCGTAA
1 CTTTTTTTTTCAATAACGTAA
24321043 CTTTTTTTTTCAATA
1 CTTTTTTTTTCAATA
24321058 CAAATACATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
19 2 0.07
20 14 0.50
21 12 0.43
ACGTcount: A:0.23, C:0.12, G:0.02, T:0.62
Consensus pattern (21 bp):
CTTTTTTTTTCAATAACGTAA
Found at i:24321117 original size:11 final size:10
Alignment explanation
Indices: 24321095--24321130 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
24321085 CGCCAAAAAA
24321095 TTTTTTAATT
1 TTTTTTAATT
*
24321105 TTTTTCAATT
1 TTTTTTAATT
24321115 TTTTTTGAATT
1 TTTTTT-AATT
24321126 TTTTT
1 TTTTT
24321131 AAACACTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (10 bp):
TTTTTTAATT
Found at i:24324252 original size:51 final size:51
Alignment explanation
Indices: 24324186--24324317 Score: 167
Period size: 51 Copynumber: 2.6 Consensus size: 51
24324176 TTGGTTCACG
*
24324186 TAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCT-TCCGGTACACA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTAT-CGATACACA
* * * ** * *
24324237 TAGTAGTCTGTACATAGTACTACACATGTGACCATTATCTATCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTATCGATACACA
*
24324288 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACATAGTACTACACACGTG
24324318 TTTATAGGCA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
51 67 0.99
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTATCGATACACA
Found at i:24329835 original size:6 final size:6
Alignment explanation
Indices: 24329820--24329913 Score: 71
Period size: 6 Copynumber: 15.7 Consensus size: 6
24329810 TAATGGAATC
* ** * **
24329820 GAAAAA GAAAAC GAAAAA GAAAAA GAAATT GCAAAA GAAAAA GAAATC
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
** * * * **
24329868 GAAAAA GTGAGA GAAAAA GAAAAA GAGAAA TAAATC GAAAAA GAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAA
24329914 TTGAGATTGA
Statistics
Matches: 62, Mismatches: 26, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
6 62 1.00
ACGTcount: A:0.70, C:0.04, G:0.19, T:0.06
Consensus pattern (6 bp):
GAAAAA
Found at i:24329843 original size:18 final size:18
Alignment explanation
Indices: 24329820--24329913 Score: 98
Period size: 18 Copynumber: 5.2 Consensus size: 18
24329810 TAATGGAATC
*
24329820 GAAAAAGAAAACGAAAAA
1 GAAAAAGAAATCGAAAAA
* *
24329838 GAAAAAGAAATTGCAAAA
1 GAAAAAGAAATCGAAAAA
24329856 GAAAAAGAAATCGAAAAA
1 GAAAAAGAAATCGAAAAA
** * **
24329874 GTGAGAGAAAAAGAAAAA
1 GAAAAAGAAATCGAAAAA
* *
24329892 GAGAAATAAATCGAAAAA
1 GAAAAAGAAATCGAAAAA
24329910 GAAA
1 GAAA
24329914 TTGAGATTGA
Statistics
Matches: 60, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 60 1.00
ACGTcount: A:0.70, C:0.04, G:0.19, T:0.06
Consensus pattern (18 bp):
GAAAAAGAAATCGAAAAA
Found at i:24338557 original size:125 final size:125
Alignment explanation
Indices: 24338418--24338667 Score: 500
Period size: 125 Copynumber: 2.0 Consensus size: 125
24338408 TCCACTCCTC
24338418 CACCATTAAAGGTCATCGAACCTTCACCTCACCCCCACTGGACCACCACCTCTCTTCCGCTATCA
1 CACCATTAAAGGTCATCGAACCTTCACCTCACCCCCACTGGACCACCACCTCTCTTCCGCTATCA
24338483 TCGCGTCACCGTACTGCCGCCGCCGTCGACCACCACCAAAAGTTTTTATTTTTCTTATTT
66 TCGCGTCACCGTACTGCCGCCGCCGTCGACCACCACCAAAAGTTTTTATTTTTCTTATTT
24338543 CACCATTAAAGGTCATCGAACCTTCACCTCACCCCCACTGGACCACCACCTCTCTTCCGCTATCA
1 CACCATTAAAGGTCATCGAACCTTCACCTCACCCCCACTGGACCACCACCTCTCTTCCGCTATCA
24338608 TCGCGTCACCGTACTGCCGCCGCCGTCGACCACCACCAAAAGTTTTTATTTTTCTTATTT
66 TCGCGTCACCGTACTGCCGCCGCCGTCGACCACCACCAAAAGTTTTTATTTTTCTTATTT
24338668 TGTTCCCCTC
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 125 1.00
ACGTcount: A:0.22, C:0.39, G:0.12, T:0.27
Consensus pattern (125 bp):
CACCATTAAAGGTCATCGAACCTTCACCTCACCCCCACTGGACCACCACCTCTCTTCCGCTATCA
TCGCGTCACCGTACTGCCGCCGCCGTCGACCACCACCAAAAGTTTTTATTTTTCTTATTT
Found at i:24348882 original size:27 final size:27
Alignment explanation
Indices: 24348851--24349025 Score: 190
Period size: 27 Copynumber: 6.4 Consensus size: 27
24348841 TAAATTGTAC
24348851 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
24348878 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
24348904 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
24348932 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
24348960 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
24348987 AGCATTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
24349014 AGCACTGAGTGT
1 AGCACTAAGTGT
24349026 ACGGACTCAA
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:24348996 original size:82 final size:81
Alignment explanation
Indices: 24348852--24349007 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
24348842 AAATTGTACA
* *
24348852 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
24348917 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
24348933 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCATTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
24348997 GTGCGAGTTGA
64 GTGCGAATTGA
24349008 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24349019 original size:82 final size:81
Alignment explanation
Indices: 24348848--24349025 Score: 214
Period size: 82 Copynumber: 2.2 Consensus size: 81
24348838 GATTAAATTG
* *
24348848 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
24348913 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** * *
24348929 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCATT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
24348993 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
24349011 TATAGCACTGAGTGT
1 TACAGCACTAAGTGT
24349026 ACGGACTCAA
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 62 0.77
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:24357070 original size:27 final size:27
Alignment explanation
Indices: 24357036--24357186 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
24357026 TAAATTGTAC
* *
24357036 AGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
24357062 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
24357090 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
24357118 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
24357145 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
24357172 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24357187 GACTCAATAT
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 84 0.78
28 23 0.21
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:24357133 original size:55 final size:54
Alignment explanation
Indices: 24357035--24357186 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 54
24357025 TTAAATTGTA
** *
24357035 CAGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATG
1 CAGCACTAAGTGTGCGAGTTGAATATGTA-GCACTAAGTGTGCGAATTGACCACG
* * * **
24357089 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAG-TTGAATATGTAGCACTAAGTGTGCGAATTGACCACG
* * * *
24357144 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
24357187 GACTCAATAT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 38 0.46
55 44 0.53
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (54 bp):
CAGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAATTGACCACG
Found at i:24357177 original size:82 final size:82
Alignment explanation
Indices: 24357036--24357186 Score: 187
Period size: 82 Copynumber: 1.8 Consensus size: 82
24357026 TAAATTGTAC
* * *
24357036 AGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTG
1 AGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
24357101 TGCGAGTTTGACTATGT
66 TGCGAGTTTGACTATGT
** * * ** * *
24357118 AGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTGTGCGAATTGACCATACAGCACTAAGT
24357182 GTGCG
65 GTGCG
24357187 GACTCAATAT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 1 0.02
82 56 0.98
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGTGCGAATTGACCATACAGCACTAAGTG
TGCGAGTTTGACTATGT
Found at i:24366034 original size:20 final size:21
Alignment explanation
Indices: 24366011--24366050 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24366001 AATGAGTTGC
24366011 TTATATTTC-TAAATATAATT
1 TTATATTTCTTAAATATAATT
* *
24366031 TTATGTTTCTTATATATAAT
1 TTATATTTCTTAAATATAAT
24366051 AAAAATAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (21 bp):
TTATATTTCTTAAATATAATT
Found at i:24372817 original size:13 final size:13
Alignment explanation
Indices: 24372799--24372823 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24372789 GTGAATTTAC
24372799 TTGTGTGAAAATG
1 TTGTGTGAAAATG
24372812 TTGTGTGAAAAT
1 TTGTGTGAAAAT
24372824 TTTATCGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (13 bp):
TTGTGTGAAAATG
Found at i:24373954 original size:41 final size:41
Alignment explanation
Indices: 24373897--24374049 Score: 216
Period size: 41 Copynumber: 3.7 Consensus size: 41
24373887 TTTTGTAAGT
* *
24373897 TCAGGCTTTATGCCTAGCAAGCTTTATGCTGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
*
24373938 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
* * * * *
24373979 TCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGTA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
* *
24374020 TCGGGCTTTGTGCCTAGCAGGCTTTATGCC
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCC
24374050 AGTTTTTTAT
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 100 1.00
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.35
Consensus pattern (41 bp):
TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
Found at i:24374905 original size:69 final size:69
Alignment explanation
Indices: 24374818--24375387 Score: 897
Period size: 69 Copynumber: 8.3 Consensus size: 69
24374808 TTATTTTTAA
*
24374818 GCCTATTTGCTGTATATATGCTGTTATATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
1 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
24374883 TGCT
66 TGCT
* * * *
24374887 GCCTATTTACTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTATTAACTTTGGTATCTATA
1 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
*
24374952 TGTT
66 TGCT
*
24374956 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTATTAAATTTGGTATGTATA
1 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
24375021 TGCT
66 TGCT
* * *
24375025 GCCTATTTACTGTATATATGCTGTTAAATTTTGATGTAAAAATGCTGTTAAATTTGGTATGTATA
1 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
24375090 TGCT
66 TGCT
* * * * * ***
24375094 GCCCATTTGTTGTATATATGTTGATAAATTTTGGTGTAAAAATGCTGCCCAATTTGGTATGTATA
1 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
24375159 TGCT
66 TGCT
* *
24375163 GCCCATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
1 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
24375228 TGCT
66 TGCT
* *
24375232 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAGAAGTGCTGTTAAATTTGATATGTATA
1 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
24375297 TGCT
66 TGCT
* *
24375301 GCCTATTTACTGTGTATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
1 GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
*
24375366 TGTT
66 TGCT
* *
24375370 GCCCATTTGTTGTATATA
1 GCCTATTTGCTGTATATA
24375388 AGAGTTGTCC
Statistics
Matches: 459, Mismatches: 42, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 459 1.00
ACGTcount: A:0.25, C:0.09, G:0.20, T:0.45
Consensus pattern (69 bp):
GCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATA
TGCT
Found at i:24375180 original size:22 final size:22
Alignment explanation
Indices: 24375076--24375185 Score: 85
Period size: 22 Copynumber: 4.9 Consensus size: 22
24375066 ATGCTGTTAA
* *
24375076 ATTTGGTATGTATATGCTGCCC
1 ATTTGGTGTATATATGCTGCCC
* * ***
24375098 ATTTGTTGTATATATGTTGATAA
1 ATTTGGTGTATATATGCTG-CCC
* *
24375121 ATTTTGGTGTAAAAATGCTGCCC
1 A-TTTGGTGTATATATGCTGCCC
* *
24375144 AATTTGGTATGTATATGCTGCCC
1 -ATTTGGTGTATATATGCTGCCC
*
24375167 ATTTGTTGTATATATGCTG
1 ATTTGGTGTATATATGCTG
24375186 TTAAATTTTG
Statistics
Matches: 64, Mismatches: 21, Indels: 6
0.70 0.23 0.07
Matches are distributed among these distances:
22 31 0.48
23 18 0.28
24 15 0.23
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.44
Consensus pattern (22 bp):
ATTTGGTGTATATATGCTGCCC
Found at i:24375256 original size:45 final size:45
Alignment explanation
Indices: 24375066--24375262 Score: 139
Period size: 45 Copynumber: 4.3 Consensus size: 45
24375056 TGATGTAAAA
* * *
24375066 ATGCTGTTAAATTTGGTATGTATATGCTGCCCATTTGTTGTATAT
1 ATGCTGTTAAATTTGGTATATATATGCTGCCTATTTGGTGTATAT
* * * * * * * *
24375111 ATGTTGATAAATTTTGGTGTAAAAATGCTGCCCAATTTGGTATGTAT
1 ATGCTGTTAAA-TTTGGTATATATATGCTG-CCTATTTGGTGTATAT
*** * * * *
24375158 ATGCTG-CCCATTTGTTGTATATATGCTG-TTAAATTTTGGTGTA-AA
1 ATGCTGTTAAATTTGGTATATATATGCTGCCT--A-TTTGGTGTATAT
* *
24375203 AGTGCTGTTAAATTTGGTATGTATATGCTGCCTATTTGCTGTATAT
1 A-TGCTGTTAAATTTGGTATATATATGCTGCCTATTTGGTGTATAT
24375249 ATGCTGTTAAATTT
1 ATGCTGTTAAATTT
24375263 TGGTGTAGAA
Statistics
Matches: 112, Mismatches: 31, Indels: 18
0.70 0.19 0.11
Matches are distributed among these distances:
45 48 0.43
46 30 0.27
47 33 0.29
48 1 0.01
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (45 bp):
ATGCTGTTAAATTTGGTATATATATGCTGCCTATTTGGTGTATAT
Found at i:24381581 original size:41 final size:41
Alignment explanation
Indices: 24381524--24381640 Score: 191
Period size: 41 Copynumber: 2.9 Consensus size: 41
24381514 TTTTGTAAGT
24381524 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
* *
24381565 TCAGGCTTGATGCCTAGCAGGCTCTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
* *
24381606 TCAGACTTTATGTCTAGCAGGCTTTGTGCC-GTGAA
1 TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAA
24381641 ATGTATTGGG
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 5 0.07
41 65 0.93
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (41 bp):
TCAGGCTTTATGCCTAGCAGGCTTTGTGCCGGTGAATTATA
Found at i:24382536 original size:45 final size:45
Alignment explanation
Indices: 24382485--24382588 Score: 163
Period size: 45 Copynumber: 2.3 Consensus size: 45
24382475 GTAAAAGTGC
*
24382485 TGTTAAATTTGGTATGTATATGCTGCCTATTTACTGTATATATGT
1 TGTTAAATTTGGTATGTATATGCTGCCCATTTACTGTATATATGT
**
24382530 TGTTAAATTTGGTATGTATATGCTGCCCATTTGTTGTATATATGT
1 TGTTAAATTTGGTATGTATATGCTGCCCATTTACTGTATATATGT
*
24382575 TGATAAAATTTGGT
1 TG-TTAAATTTGGT
24382589 GTAACAATGC
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
45 44 0.81
46 10 0.19
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (45 bp):
TGTTAAATTTGGTATGTATATGCTGCCCATTTACTGTATATATGT
Found at i:24382601 original size:46 final size:44
Alignment explanation
Indices: 24382489--24382601 Score: 120
Period size: 45 Copynumber: 2.5 Consensus size: 44
24382479 AAGTGCTGTT
* * *
24382489 AAATTTGGTATGTATATGCTGCCTATTTACTGTATATATGTTGTT
1 AAATTTGG-ATGTAAATGCTGCCCATTTACTGTATATATGTTGTA
* **
24382534 AAATTTGGTATGTATATGCTGCCCATTTGTTGTATATATGTTGATA
1 AAATTTGG-ATGTAAATGCTGCCCATTTACTGTATATATGTTG-TA
24382580 AAATTTGG-TGTAACAATGCTGC
1 AAATTTGGATGT-A-AATGCTGC
24382602 TTAATTTGGT
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 3 0.05
45 41 0.68
46 16 0.27
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (44 bp):
AAATTTGGATGTAAATGCTGCCCATTTACTGTATATATGTTGTA
Found at i:24382614 original size:69 final size:69
Alignment explanation
Indices: 24382530--24382794 Score: 383
Period size: 69 Copynumber: 3.9 Consensus size: 69
24382520 GTATATATGT
* * *
24382530 TGTTAAATTTGGTATGTATATGCTGCCCATTTGTTGTATATATGTTGATAAAATTTGGTGTAACA
1 TGTTAAATTTGGTATGTATATGCTGCCCATTTGCTGTATATATGCTGTTAAAATTTGGTGTAA-A
24382595 A-TGC
65 AGTGC
* * *
24382599 TGCTT-AATTTGGTATGTATATGCTGCCCATTTGTTGTATATATGCTGTTAAATTTTAGTGTAAA
1 TG-TTAAATTTGGTATGTATATGCTGCCCATTTGCTGTATATATGCTGTTAAAATTTGGTGTAAA
*
24382663 AGTGT
65 AGTGC
* * *
24382668 TGTTAAAGTTGGTATGTATATGCTGCCTATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAA
1 TGTTAAATTTGGTATGTATATGCTGCCCATTTGCTGTATATATGCTGTTAAAATTTGGTGTAAAA
24382733 GTGC
66 GTGC
* *
24382737 TGTTAAATTTGGTATGTATATGCTGCCTATTTACTGTATATATGCTGTT-AAATTTGGT
1 TGTTAAATTTGGTATGTATATGCTGCCCATTTGCTGTATATATGCTGTTAAAATTTGGT
24382795 ATGTATATGG
Statistics
Matches: 180, Mismatches: 13, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
68 12 0.07
69 166 0.92
70 2 0.01
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (69 bp):
TGTTAAATTTGGTATGTATATGCTGCCCATTTGCTGTATATATGCTGTTAAAATTTGGTGTAAAA
GTGC
Found at i:24382645 original size:45 final size:45
Alignment explanation
Indices: 24382580--24382823 Score: 133
Period size: 45 Copynumber: 5.4 Consensus size: 45
24382570 TATGTTGATA
*
24382580 AAATTTGGTGTA-ACAATGCTGCTT-AATTTGGTATGTATATGCTGC
1 AAATTTGGTGTATA-TATGCTG-TTAAATTTGGTATGTATATGCTGC
** * * * *
24382625 CCATTTGTTGTATATATGCTGTTAAATTT--TAGTGTAAAAGTGTTGTT
1 AAATTTGGTGTATATATGCTGTTAAATTTGGTA-TGT-ATA-TGCTG-C
* * * * * * * *
24382672 AAAGTTGGTATGTATATGCTGCCT--ATTTGCTGTATATATGCTGTT
1 AAATTTGGTGTATATATGCTG-TTAAATTTGGTATGTATATGCTG-C
*
24382717 AAATTTTGGTGTA-AAAGTGCTGTTAAATTTGGTATGTATATGCTGC
1 AAA-TTTGGTGTATATA-TGCTGTTAAATTTGGTATGTATATGCTGC
** ** *
24382763 CTATTTACTGTATATATGCTGTTAAATTTGGTATGTATATGGTGC
1 AAATTTGGTGTATATATGCTGTTAAATTTGGTATGTATATGCTGC
** *
24382808 TCATTTGTTGTATATA
1 AAATTTGGTGTATATA
24382824 AAAGCTGTCC
Statistics
Matches: 148, Mismatches: 37, Indels: 28
0.69 0.17 0.13
Matches are distributed among these distances:
43 2 0.01
44 5 0.03
45 81 0.55
46 25 0.17
47 33 0.22
48 2 0.01
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (45 bp):
AAATTTGGTGTATATATGCTGTTAAATTTGGTATGTATATGCTGC
Found at i:24382660 original size:24 final size:23
Alignment explanation
Indices: 24382450--24382803 Score: 158
Period size: 23 Copynumber: 15.4 Consensus size: 23
24382440 CCTATTTTTC
*
24382450 TGTATATATGATGTTAAATTTTGG
1 TGTATATATGCTGTTAAA-TTTGG
*
24382474 TGTA-AAAGTGCTGTTAAATTTGG
1 TGTATATA-TGCTGTTAAATTTGG
* * * **
24382497 TATGTATATGCTGCCT--ATTTAC
1 TGTATATATGCTG-TTAAATTTGG
*
24382519 TGTATATATGTTGTTAAATTTGG
1 TGTATATATGCTGTTAAATTTGG
* * *** *
24382542 TATGTATATGCTG-CCCATTTGT
1 TGTATATATGCTGTTAAATTTGG
* *
24382564 TGTATATATGTTGATAAAATTTGG
1 TGTATATATGCTG-TTAAATTTGG
*
24382588 TGTA-ACAATGCTGCTT-AATTTGG
1 TGTATA-TATGCTG-TTAAATTTGG
* * *** *
24382611 TATGTATATGCTG-CCCATTTGT
1 TGTATATATGCTGTTAAATTTGG
*
24382633 TGTATATATGCTGTTAAATTTTAG
1 TGTATATATGCTGTTAAA-TTTGG
* * *
24382657 TGTA-AAAGTGTTGTTAAAGTTGG
1 TGTATATA-TGCTGTTAAATTTGG
* * * *
24382680 TATGTATATGCTGCCT--ATTTGC
1 TGTATATATGCTG-TTAAATTTGG
24382702 TGTATATATGCTGTTAAATTTTGG
1 TGTATATATGCTGTTAAA-TTTGG
*
24382726 TGTA-AAAGTGCTGTTAAATTTGG
1 TGTATATA-TGCTGTTAAATTTGG
* * * **
24382749 TATGTATATGCTGCCT--ATTTAC
1 TGTATATATGCTG-TTAAATTTGG
24382771 TGTATATATGCTGTTAAATTTGG
1 TGTATATATGCTGTTAAATTTGG
* *
24382794 TATGTATATG
1 TGTATATATG
24382804 GTGCTCATTT
Statistics
Matches: 233, Mismatches: 74, Indels: 47
0.66 0.21 0.13
Matches are distributed among these distances:
21 3 0.01
22 75 0.32
23 83 0.36
24 72 0.31
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (23 bp):
TGTATATATGCTGTTAAATTTGG
Found at i:24385200 original size:19 final size:19
Alignment explanation
Indices: 24385152--24385201 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
24385142 CATTTTCCAT
*
24385152 TATGTTAAA-ATTTACTGA
1 TATGGTAAATATTTACTGA
24385170 TAT-G-ACAATATTTACTGA
1 TATGGTA-AATATTTACTGA
24385188 TATGGTAAATATTT
1 TATGGTAAATATTT
24385202 TTTTAAGGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
16 1 0.04
17 2 0.07
18 15 0.56
19 8 0.30
20 1 0.04
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (19 bp):
TATGGTAAATATTTACTGA
Found at i:24392995 original size:45 final size:45
Alignment explanation
Indices: 24392931--24393056 Score: 153
Period size: 45 Copynumber: 2.8 Consensus size: 45
24392921 ACGATATAAA
* * * *
24392931 AATGTAGAAGACCATGGTTGACAGACACTATAACATCAAGACGAG
1 AATGTATAAGACTATGGTTGAAAGACACTATGACATCAAGACGAG
* * *
24392976 AATGTATAAGACTATGGTTGAAATACATTATGGCATCAAGACGAG
1 AATGTATAAGACTATGGTTGAAAGACACTATGACATCAAGACGAG
* * * *
24393021 AATGAATAAGATTATGATTGAAAGACTCTATGACAT
1 AATGTATAAGACTATGGTTGAAAGACACTATGACAT
24393057 GCTTCAATCA
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.25
Consensus pattern (45 bp):
AATGTATAAGACTATGGTTGAAAGACACTATGACATCAAGACGAG
Found at i:24393775 original size:22 final size:21
Alignment explanation
Indices: 24393727--24393775 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
24393717 CTTTGATTAG
24393727 ATAAAACAATTAAAATAAAGA
1 ATAAAACAATTAAAATAAAGA
* *
24393748 ACTAAAATAATTAAAATAGAATA
1 A-TAAAACAATTAAAATA-AAGA
24393771 ATAAA
1 ATAAA
24393776 TCTACGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 19 0.79
23 4 0.17
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.22
Consensus pattern (21 bp):
ATAAAACAATTAAAATAAAGA
Found at i:24406686 original size:17 final size:17
Alignment explanation
Indices: 24406651--24406701 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
24406641 TCTTTTAATG
* **
24406651 TTTATTTTATTTTGATT
1 TTTATTTTCTTTTCTTT
*
24406668 TTGATTTT-TTTTCTTT
1 TTTATTTTCTTTTCTTT
*
24406684 TTTCTTTTCTTTTCTTT
1 TTTATTTTCTTTTCTTT
24406701 T
1 T
24406702 GGCACGTTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
16 12 0.43
17 16 0.57
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.80
Consensus pattern (17 bp):
TTTATTTTCTTTTCTTT
Found at i:24409306 original size:22 final size:20
Alignment explanation
Indices: 24409271--24409329 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 20
24409261 TTTTTCTTGC
24409271 AAAATCAAAGTTTTATTTTTAA
1 AAAATCAAA-TTTTATTTTT-A
*
24409293 AAAATC-AATATTT-TTCTTA
1 AAAATCAAAT-TTTATTTTTA
24409312 AAAATCAAATCTTTATTT
1 AAAATCAAAT-TTTATTT
24409330 CGAAATAGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 7 0.23
20 11 0.35
21 7 0.23
22 6 0.19
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (20 bp):
AAAATCAAATTTTATTTTTA
Found at i:24409526 original size:148 final size:151
Alignment explanation
Indices: 24409303--24409592 Score: 403
Period size: 148 Copynumber: 1.9 Consensus size: 151
24409293 AAAATCAATA
* * * *
24409303 TTTTTCTTAAAAATCAAATCTTTATTTCGAAATAGTTGAAAAAGATTAAAACTTTGTTTTAGAAA
1 TTTTTCTTAAAAATCAAATCTTTATTTCAAAATAATTGAAAAAGATCAAAACTTTATTTTAGAAA
*
24409368 ATGTAAACTTTCCTTAAAAATGACAAAAAAAACAAACTTTTA-TTTTAAAAATCTAAACTTTCTC
66 ATGTAAACTTTCCTTAAAAATGACAAAAAAAACAAACTTTTATTTTTAAAAATCTAAACTTTCGC
*
24409432 TTTTTTAAAAAAACCGCTATTT
131 -TTTTAAAAAAAACCGCTATTT
*
24409454 TTTTTCTTAAAAATCATAA-CTTTTATTTCAAAATAATT-AAAAA-ATCAAAAGTTTATTTTA-A
1 TTTTTCTTAAAAATCA-AATC-TTTATTTCAAAATAATTGAAAAAGATCAAAACTTTATTTTAGA
* ** * *
24409515 AAAT-TAAACTTTCTTTTGAAATGACTAAAAAAACAAATTTTTATTTTTAAAAATCTAAACTTTC
64 AAATGTAAACTTTCCTTAAAAATGACAAAAAAAACAAACTTTTATTTTTAAAAATCTAAACTTTC
24409579 GCTTTTAAAAAAAA
129 GCTTTTAAAAAAAA
24409593 TCAAAACTTT
Statistics
Matches: 124, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
148 45 0.36
149 26 0.21
150 14 0.11
151 22 0.18
152 17 0.14
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (151 bp):
TTTTTCTTAAAAATCAAATCTTTATTTCAAAATAATTGAAAAAGATCAAAACTTTATTTTAGAAA
ATGTAAACTTTCCTTAAAAATGACAAAAAAAACAAACTTTTATTTTTAAAAATCTAAACTTTCGC
TTTTAAAAAAAACCGCTATTT
Found at i:24409563 original size:50 final size:51
Alignment explanation
Indices: 24409359--24409578 Score: 156
Period size: 50 Copynumber: 4.4 Consensus size: 51
24409349 TAAAACTTTG
* * * * *
24409359 TTTTAGAAAATGTAAACTTTC-CTTAAAAATGACAAAAAAAACAAACTTTTA
1 TTTTA-AAAATCTAAACTTTCTATTTAAAATGACTAAAAAAACAAATTTTTA
* * ** *
24409410 TTTTAAAAATCTAAACTTTCTCTTT----T--TTAAAAAAACCGCTATTTTTT
1 TTTTAAAAATCTAAACTTTCTATTTAAAATGACTAAAAAAA-C-AAATTTTTA
* * * **
24409457 TTCTTAAAAATC-ATAACTTT-TATTTCAAAATAATTAAAAAATCAAAAGTTTA
1 TT-TTAAAAATCTA-AACTTTCTATTT-AAAATGACTAAAAAAACAAATTTTTA
*
24409509 TTTTAAAAAT-TAAACTTTCT-TTTGAAATGACTAAAAAAACAAATTTTTA
1 TTTTAAAAATCTAAACTTTCTATTTAAAATGACTAAAAAAACAAATTTTTA
24409558 TTTTTAAAAATCTAAACTTTC
1 -TTTTAAAAATCTAAACTTTC
24409579 GCTTTTAAAA
Statistics
Matches: 132, Mismatches: 21, Indels: 32
0.71 0.11 0.17
Matches are distributed among these distances:
45 7 0.05
46 1 0.01
47 13 0.10
48 15 0.11
49 20 0.15
50 33 0.25
51 27 0.20
52 7 0.05
53 1 0.01
54 8 0.06
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.40
Consensus pattern (51 bp):
TTTTAAAAATCTAAACTTTCTATTTAAAATGACTAAAAAAACAAATTTTTA
Found at i:24409592 original size:149 final size:151
Alignment explanation
Indices: 24409303--24409592 Score: 401
Period size: 149 Copynumber: 1.9 Consensus size: 151
24409293 AAAATCAATA
* * * *
24409303 TTTTTCTTAAAAATCAAATCTTTATTTCGAAATAGTTGAAAAAGATTAAAACTTTGTTTTAGAAA
1 TTTTTCTTAAAAATCAAATCTTTATTTCAAAATAATTGAAAAAGATCAAAACTTTATTTTAGAAA
*
24409368 ATGTAAACTTTCCTTAAAAATGACAAAAAAAACAAACTTTTATTTTAAAAATCTAAACTTTCTCT
66 ATGTAAACTTTCCTTAAAAATGACAAAAAAAACAAACTTTTATTTTAAAAATCTAAACTTTCGCT
**
24409433 TTTTTAAAAAAACCGCTATTT
131 TTTAAAAAAAAACCGCTATTT
*
24409454 TTTTTCTTAAAAATCATAA-CTTTTATTTCAAAATAATT-AAAAA-ATCAAAAGTTTATTTTA-A
1 TTTTTCTTAAAAATCA-AATC-TTTATTTCAAAATAATTGAAAAAGATCAAAACTTTATTTTAGA
* ** * *
24409515 AAAT-TAAACTTTCTTTTGAAATGACTAAAAAAACAAATTTTTATTTTTAAAAATCTAAACTTTC
64 AAATGTAAACTTTCCTTAAAAATGACAAAAAAAACAAACTTTTA-TTTTAAAAATCTAAACTTTC
24409579 GCTTTTAAAAAAAA
128 GCTTTTAAAAAAAA
24409593 TCAAAACTTT
Statistics
Matches: 123, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
148 34 0.28
149 36 0.29
150 14 0.11
151 22 0.18
152 17 0.14
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (151 bp):
TTTTTCTTAAAAATCAAATCTTTATTTCAAAATAATTGAAAAAGATCAAAACTTTATTTTAGAAA
ATGTAAACTTTCCTTAAAAATGACAAAAAAAACAAACTTTTATTTTAAAAATCTAAACTTTCGCT
TTTAAAAAAAAACCGCTATTT
Found at i:24410447 original size:42 final size:42
Alignment explanation
Indices: 24410391--24410531 Score: 185
Period size: 42 Copynumber: 3.4 Consensus size: 42
24410381 CTTCATATAC
*
24410391 AATGCAATGCAAAGTAAATGGACCTCCACACCTGGGCTTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCTTCTA
* * * * *
24410433 AATGCAATGAAAAGTAAACGGGCCTGCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCTTCTA
* * *
24410475 AATACAATAAAAAGTAAATGAACCTCCACACCTGGGCCTT-TA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGG-CTTCTA
24410517 AATGCAATGAAAAGT
1 AATGCAATGAAAAGT
24410532 CACCTGGGCT
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 80 0.98
43 2 0.02
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCTTCTA
Found at i:24410537 original size:29 final size:29
Alignment explanation
Indices: 24410503--24410560 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
24410493 TGAACCTCCA
24410503 CACCTGGGCCTT-TAAATGCAATGAAAAGT
1 CACCTGGG-CTTCTAAATGCAATGAAAAGT
24410532 CACCTGGGCTTCTAAATGCAATGAAAAGT
1 CACCTGGGCTTCTAAATGCAATGAAAAGT
24410561 AAACGGGCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 3 0.11
29 25 0.89
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (29 bp):
CACCTGGGCTTCTAAATGCAATGAAAAGT
Found at i:24410577 original size:71 final size:71
Alignment explanation
Indices: 24410461--24410602 Score: 176
Period size: 71 Copynumber: 2.0 Consensus size: 71
24410451 CGGGCCTGCA
* * * * *
24410461 CACCTAGGCCTCTAAATACAATAAAAAGTAAATGAACCTCCACACCTGGGCCTTTAAATGCAATG
1 CACCTAGGCCTCTAAATACAATAAAAAGTAAACGAACCTCCACACCTAGGCCTCTAAATACAATA
24410526 AAAAGT
66 AAAAGT
* * * * ** *
24410532 CACCTGGGCTTCTAAATGCAATGAAAAGTAAACGGGCCTGCACACCTAGGCCTCTAAATACAATA
1 CACCTAGGCCTCTAAATACAATAAAAAGTAAACGAACCTCCACACCTAGGCCTCTAAATACAATA
24410597 AAAAGT
66 AAAAGT
24410603 AAATGAACCT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
71 59 1.00
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.20
Consensus pattern (71 bp):
CACCTAGGCCTCTAAATACAATAAAAAGTAAACGAACCTCCACACCTAGGCCTCTAAATACAATA
AAAAGT
Found at i:24410601 original size:42 final size:42
Alignment explanation
Indices: 24410532--24410850 Score: 415
Period size: 42 Copynumber: 7.6 Consensus size: 42
24410522 AATGAAAAGT
* * * * *
24410532 CACCTGGGCTTCTAAATGCAATGAAAAGTAAACGGGCCTGCA
1 CACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCA
* * *
24410574 CACCTAGGCCTCTAAATACAATAAAAAGTAAATGAACCTCCA
1 CACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCA
* * *
24410616 CACCTGGGCCTTTAAATGCAATGAAAAGTGAATGGACCTCCA
1 CACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCA
* *
24410658 CACCT-GAGCCTTTAAATGCAATGAAAAGTGAATGGACCTCCA
1 CACCTAG-GCCTCTAAATGCAATGAAAAGTAAATGGACCTCCA
* * *
24410700 CACCTAGGACTTTAAATGCAATGAAAAGTAAATGGACCTCTA
1 CACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCA
* * *
24410742 CACCTAGGCCTCTAAATGCAATAAAAAGTAAATAGACCTCTA
1 CACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCA
* * *
24410784 CGCCCAGGCCTCTAAATGTAATGAAAAGTAAATGGACCTCCA
1 CACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCA
*
24410826 CACCTGGGCCTCTAAATGCAATGAA
1 CACCTAGGCCTCTAAATGCAATGAA
24410851 TGCTTTCTTT
Statistics
Matches: 244, Mismatches: 31, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
41 1 0.00
42 242 0.99
43 1 0.00
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.21
Consensus pattern (42 bp):
CACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCA
Found at i:24410617 original size:113 final size:113
Alignment explanation
Indices: 24410419--24410644 Score: 452
Period size: 113 Copynumber: 2.0 Consensus size: 113
24410409 TGGACCTCCA
24410419 CACCTGGGCTTCTAAATGCAATGAAAAGTAAACGGGCCTGCACACCTAGGCCTCTAAATACAATA
1 CACCTGGGCTTCTAAATGCAATGAAAAGTAAACGGGCCTGCACACCTAGGCCTCTAAATACAATA
24410484 AAAAGTAAATGAACCTCCACACCTGGGCCTTTAAATGCAATGAAAAGT
66 AAAAGTAAATGAACCTCCACACCTGGGCCTTTAAATGCAATGAAAAGT
24410532 CACCTGGGCTTCTAAATGCAATGAAAAGTAAACGGGCCTGCACACCTAGGCCTCTAAATACAATA
1 CACCTGGGCTTCTAAATGCAATGAAAAGTAAACGGGCCTGCACACCTAGGCCTCTAAATACAATA
24410597 AAAAGTAAATGAACCTCCACACCTGGGCCTTTAAATGCAATGAAAAGT
66 AAAAGTAAATGAACCTCCACACCTGGGCCTTTAAATGCAATGAAAAGT
24410645 GAATGGACCT
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 113 1.00
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (113 bp):
CACCTGGGCTTCTAAATGCAATGAAAAGTAAACGGGCCTGCACACCTAGGCCTCTAAATACAATA
AAAAGTAAATGAACCTCCACACCTGGGCCTTTAAATGCAATGAAAAGT
Found at i:24424344 original size:144 final size:145
Alignment explanation
Indices: 24424062--24424354 Score: 400
Period size: 144 Copynumber: 2.0 Consensus size: 145
24424052 TTATTTTTTT
* *
24424062 AAAATCACTACTTTTCTTAAAAATCAAAGCTCTATTTCGAAATAGTTGAAAAAGATCAAAACTTC
1 AAAATCACTACTTTTCTTAAAAATCAAAACTCTATTTCGAAATAGTTGAAAAAGATCAAAAATTC
*
24424127 TTTTAAAAATATTTAGACTTTTCCTTAAAATGACTAAAAAATAGATTTTTATTTTAAAAATATAA
66 TTTTAAAAATATTTAAACTTTTCCTTAAAATGACTAAAAAATAGATTTTTATTTTAAAAATATAA
24424192 ACTTTCTCTTTTTAAA
131 ACTTTCTC-TTTTAAA
* * * *
24424208 AAAATCACTATTTTTCTTAAAAATCAAAACTTTTATTTCTAAATAGTT-AAAAA-ATTAAAAATT
1 AAAATCACTACTTTTCTTAAAAATCAAAAC-TCTATTTCGAAATAGTTGAAAAAGATCAAAAATT
* * *
24424271 -TGTTTTAAAA-A-TTAAAC-TTTCCTTTGAAATGACTAAAAAAATAGATTTTTATTTTTAAAAT
65 CT-TTTAAAAATATTTAAACTTTTCC-TTAAAATGACT-AAAAAATAGATTTTTATTTTAAAAAT
*
24424332 CTAAACTTTCTCTTTTAAA
127 ATAAACTTTCTCTTTTAAA
24424351 AAAA
1 AAAA
24424355 GAAACTAGAA
Statistics
Matches: 132, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
142 5 0.04
143 26 0.20
144 38 0.29
145 15 0.11
146 33 0.25
147 15 0.11
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.40
Consensus pattern (145 bp):
AAAATCACTACTTTTCTTAAAAATCAAAACTCTATTTCGAAATAGTTGAAAAAGATCAAAAATTC
TTTTAAAAATATTTAAACTTTTCCTTAAAATGACTAAAAAATAGATTTTTATTTTAAAAATATAA
ACTTTCTCTTTTAAA
Found at i:24425005 original size:35 final size:35
Alignment explanation
Indices: 24424959--24425029 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
24424949 CTATTGTTAG
24424959 TATGAGTGTACAAATATAGACATTAAATGTGTGAT
1 TATGAGTGTACAAATATAGACATTAAATGTGTGAT
* *
24424994 TATGAGTGTACAAATGTGGACATTAAATGTGTGAT
1 TATGAGTGTACAAATATAGACATTAAATGTGTGAT
24425029 T
1 T
24425030 TCAAAGGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.35
Consensus pattern (35 bp):
TATGAGTGTACAAATATAGACATTAAATGTGTGAT
Found at i:24425452 original size:21 final size:21
Alignment explanation
Indices: 24425422--24425461 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
24425412 ATTTATTTGT
*
24425422 AAAATGTGTAATATACATGATA
1 AAAATGTGTAAAATA-ATGATA
24425444 AAAAT-TGTAAAATAATGA
1 AAAATGTGTAAAATAATGA
24425462 ATTGTATGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 8 0.47
22 5 0.29
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (21 bp):
AAAATGTGTAAAATAATGATA
Found at i:24441655 original size:15 final size:14
Alignment explanation
Indices: 24441623--24441660 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
24441613 TTAGTGAAAG
24441623 AAAAATTTAATGTT
1 AAAAATTTAATGTT
24441637 AAAAATTTAAT-TAT
1 AAAAATTTAATGT-T
*
24441651 AAAAAATTAA
1 AAAAATTTAA
24441661 ATATCAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 1 0.05
14 21 0.95
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (14 bp):
AAAAATTTAATGTT
Found at i:24444880 original size:12 final size:12
Alignment explanation
Indices: 24444863--24444888 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24444853 AAACAAAAAC
24444863 AATTTTTTTTTG
1 AATTTTTTTTTG
24444875 AATTTTTTTTTG
1 AATTTTTTTTTG
24444887 AA
1 AA
24444889 AAATGCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:24445590 original size:209 final size:210
Alignment explanation
Indices: 24445208--24445627 Score: 691
Period size: 209 Copynumber: 2.0 Consensus size: 210
24445198 TGCAACACAA
*
24445208 ATCCAAATTTTGTTTAATAGTTTACATGTCGCATAAAAAAATAAAAAATAAATGTAAAAGCATGT
1 ATCCAAAATTTGTTTAATAGTTTACATGTCGCATAAAAAAATAAAAAATAAATGTAAAAGCATGT
* *
24445273 AACTAGGCATTGGACGTGTCGTCCCCCAATCTGTTTCGTCAACTCTCGGTATGTTCCTTCTGTTA
66 AACTAGGCATTGGACGTGTCATCCCCCAATCTGTTTCGTCAACTCTCCGTATGTTCCTTCTGTTA
*
24445338 AGCACTATTTTATTCACACGCATCCGACGAATGGGCGTGCTTTGCTCTCTAGGATCAACATCCCC
131 AGCACTATTTTATTCACACGCATCCGACGAATGGGCATGCTTTGCTCTCTAGGATCAACATCCCC
24445403 GATCATAGGGCATGT
196 GATCATAGGGCATGT
* *
24445418 ATCCAAAATTTGTTTAATATTTTACATGTCGCAT-AAAAAATAAATAATAAATGTAAAAGCATGT
1 ATCCAAAATTTGTTTAATAGTTTACATGTCGCATAAAAAAATAAAAAATAAATGTAAAAGCATGT
* *
24445482 AACTATGCATTGGACGTGTCATCCCCTAAGTC-GTTTCGTCAACTCTCCGTATGTTCCTTCTGTT
66 AACTAGGCATTGGACGTGTCATCCCCCAA-TCTGTTTCGTCAACTCTCCGTATGTTCCTTCTGTT
* * * * *
24445546 AAGCACTATTTTCTTCACACGGATCCGATGGATGGGCATGCTTTGCTCTCTGGGATCAACATCCC
130 AAGCACTATTTTATTCACACGCATCCGACGAATGGGCATGCTTTGCTCTCTAGGATCAACATCCC
*
24445611 TGATCATAGGGCATGT
195 CGATCATAGGGCATGT
24445627 A
1 A
24445628 GGTGTAGCTA
Statistics
Matches: 195, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
209 161 0.83
210 34 0.17
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (210 bp):
ATCCAAAATTTGTTTAATAGTTTACATGTCGCATAAAAAAATAAAAAATAAATGTAAAAGCATGT
AACTAGGCATTGGACGTGTCATCCCCCAATCTGTTTCGTCAACTCTCCGTATGTTCCTTCTGTTA
AGCACTATTTTATTCACACGCATCCGACGAATGGGCATGCTTTGCTCTCTAGGATCAACATCCCC
GATCATAGGGCATGT
Found at i:24447451 original size:50 final size:50
Alignment explanation
Indices: 24447380--24447563 Score: 196
Period size: 50 Copynumber: 3.7 Consensus size: 50
24447370 GGTAAAGAGG
* * **
24447380 TCCCATGTAAGACCATATCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGACATGAGAAA
* * * * *
24447430 TCCC-TCTTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCAT-GTAAGACCATATCTGGGACATGGCATTGGCACCGACATGAGAAA
* *
24447480 TCCCATGTAAAACCATATCTGGGATATGGCATTGGCA--GTACATGA-AACA
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCG-ACATGAGAA-A
* *
24447529 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGG
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGG
24447564 TATGTTATTA
Statistics
Matches: 112, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
48 3 0.03
49 37 0.33
50 71 0.63
51 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATATCTGGGACATGGCATTGGCACCGACATGAGAAA
Found at i:24454060 original size:35 final size:35
Alignment explanation
Indices: 24454014--24454087 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
24454004 ATAAGTATTT
24454014 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTA
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTA
24454049 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTA
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTA
24454084 AGTT
1 AGTT
24454088 CATCTTAGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.41
Consensus pattern (35 bp):
AGTTGCTGGAATAAATTACTCATCTTAGTTAATTA
Found at i:24454092 original size:19 final size:19
Alignment explanation
Indices: 24454068--24454106 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
24454058 AATAAATTAC
24454068 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
*
24454087 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
24454106 T
1 T
24454107 GTTTAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.51
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:24455414 original size:12 final size:11
Alignment explanation
Indices: 24455397--24455428 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
24455387 GGAGGTTTGT
24455397 AAAAAAATTCA
1 AAAAAAATTCA
*
24455408 AAAAAAATTTA
1 AAAAAAATTCA
24455419 AAAAAAATTC
1 AAAAAAATTC
24455429 GTGCACAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:24457590 original size:18 final size:18
Alignment explanation
Indices: 24457546--24457608 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
24457536 AAATGAGAGA
*
24457546 AAAAGAAGAAAATGAAA-
1 AAAAGAAGAAAAAGAAAG
24457563 ATGAAA-AAGAAAAAGAAAG
1 A--AAAGAAGAAAAAGAAAG
*
24457582 AAAAGAAGAAAAATTAAGAG
1 AAAAGAAGAAAAA-GAA-AG
24457602 AAAAGAA
1 AAAAGAA
24457609 ATCGATTTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
17 4 0.11
18 19 0.50
19 6 0.16
20 9 0.24
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (18 bp):
AAAAGAAGAAAAAGAAAG
Found at i:24458553 original size:19 final size:19
Alignment explanation
Indices: 24458529--24458621 Score: 86
Period size: 19 Copynumber: 5.1 Consensus size: 19
24458519 AATAAATTAC
*
24458529 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
24458548 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
** * * *
24458567 TGC-T-GGAATAAATT-A-C
1 T-CATCTTAGTTAATTAAGT
24458583 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
*
24458602 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
24458621 T
1 T
24458622 GCTTAAATCA
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
15 1 0.02
16 2 0.04
17 7 0.12
18 7 0.12
19 39 0.68
20 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:24458578 original size:54 final size:54
Alignment explanation
Indices: 24458510--24458624 Score: 203
Period size: 54 Copynumber: 2.1 Consensus size: 54
24458500 ATAAGTATTT
* *
24458510 AGTTACTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAGTTAATTA
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
*
24458564 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTT
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
24458618 AGTTGCT
1 AGTTGCT
24458625 TAAATCATTA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.43
Consensus pattern (54 bp):
AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
Found at i:24462995 original size:275 final size:275
Alignment explanation
Indices: 24462504--24463052 Score: 1053
Period size: 275 Copynumber: 2.0 Consensus size: 275
24462494 ACTTGGATCA
* *
24462504 ACTCTGATGCCTTTAGCCTACACTATATGTCCCAGAAAATCGACTTCTCAGAGCTAGAACTCGCA
1 ACTCTGATGCCTTCAGCCTACACTATATGTCCCAGAAAATCAACTTCTCAGAGCTAGAACTCGCA
* *
24462569 TTTGCTAAACTTAGCAAACAGTTGTTTATCTTGTGGAGTTTGTAAAACAATTCTCAATTGTTCAG
66 TTTGCTAAACTTAGCAAACAGTTGTTTATCTTGCGGAGTTTGTAAAACAATTCTCAATTGCTCAG
24462634 CATGCTCAGATTCATCTCGGGAATATATTAGAATATCATAAAATCCATAAATATCGCAGGTGCAT
131 CATGCTCAGATTCATCTCGGGAATATATTAGAATATCATAAAATCCATAAATATCGCAGGTGCAT
24462699 TAGTTAAACCAAATGGCATCATAAGAAATTCATAGTGTTCGTACCTAGTTCTAAATGTAGTTTTC
196 TAGTTAAACCAAATGGCATCATAAGAAATTCATAGTGTTCGTACCTAGTTCTAAATGTAGTTTTC
24462764 AGCATATCCAAATCG
261 AGCATATCCAAATCG
24462779 ACTCTGATGCCTTCAGCCTACACTATATGTCCCAGAAAATCAACTTCTCAGAGCTAGAACTCGCA
1 ACTCTGATGCCTTCAGCCTACACTATATGTCCCAGAAAATCAACTTCTCAGAGCTAGAACTCGCA
24462844 TTTGCTAAACTTAGCAAACAGTTGTTTATCTTGCGGAGTTTGTAAAACAATTCTCAATTGCTCAG
66 TTTGCTAAACTTAGCAAACAGTTGTTTATCTTGCGGAGTTTGTAAAACAATTCTCAATTGCTCAG
24462909 CATGCTCAGATTCATCTCGGGAATATATTAGAATATCATAAAATCCATAAATATCGCAGGTGCAT
131 CATGCTCAGATTCATCTCGGGAATATATTAGAATATCATAAAATCCATAAATATCGCAGGTGCAT
24462974 TAGTTAAACCAAATGGCATCATAAGAAATTCATAGTGTTCGTACCTAGTTCTAAATGTAGTTTTC
196 TAGTTAAACCAAATGGCATCATAAGAAATTCATAGTGTTCGTACCTAGTTCTAAATGTAGTTTTC
*
24463039 AGCATATCTAAATC
261 AGCATATCCAAATC
24463053 TTTCACTCGT
Statistics
Matches: 269, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
275 269 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (275 bp):
ACTCTGATGCCTTCAGCCTACACTATATGTCCCAGAAAATCAACTTCTCAGAGCTAGAACTCGCA
TTTGCTAAACTTAGCAAACAGTTGTTTATCTTGCGGAGTTTGTAAAACAATTCTCAATTGCTCAG
CATGCTCAGATTCATCTCGGGAATATATTAGAATATCATAAAATCCATAAATATCGCAGGTGCAT
TAGTTAAACCAAATGGCATCATAAGAAATTCATAGTGTTCGTACCTAGTTCTAAATGTAGTTTTC
AGCATATCCAAATCG
Found at i:24467397 original size:9 final size:9
Alignment explanation
Indices: 24467383--24467442 Score: 57
Period size: 9 Copynumber: 6.4 Consensus size: 9
24467373 TTCACATCTT
24467383 TCTCTCAAC
1 TCTCTCAAC
* *
24467392 TCTCTCGAT
1 TCTCTCAAC
*
24467401 TCTCTCAAAT
1 TCTCTC-AAC
24467411 TCTCTCAAAC
1 TCTCTC-AAC
* *
24467421 CCTCTCAAG
1 TCTCTCAAC
24467430 TCTCTCAAC
1 TCTCTCAAC
24467439 TCTC
1 TCTC
24467443 ATGTTTTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
9 26 0.62
10 16 0.38
ACGTcount: A:0.22, C:0.40, G:0.03, T:0.35
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:24473591 original size:112 final size:113
Alignment explanation
Indices: 24473383--24473592 Score: 325
Period size: 112 Copynumber: 1.9 Consensus size: 113
24473373 CATTTTAAAG
* * *
24473383 GAAAATTTATATTTTGAAAACAACGTTTTGATTTTTTTTTTCAACTATTTTGAAATAAAAGCTTT
1 GAAAATTTAGATTTTGAAAACAACGTTTTGATTTTTTTTCTCAACTATTTCGAAATAAAAGCTTT
* *
24473448 GATCTTTAAGACAAGTAATGATTTTTTAAAAGACGGAAAAAAACAAGA
66 GATCATTAAGAAAAGTAATGATTTTTTAAAAGACGGAAAAAAACAAGA
* *
24473496 GAAAGTTTAGATTTTTAAAACAAAC-TTTTGA-TTTTTTTCTCAACTATTTCGAAATAAAAGCTT
1 GAAAATTTAGATTTTGAAAAC-AACGTTTTGATTTTTTTTCTCAACTATTTCGAAATAAAAGCTT
*
24473559 TGATCATTAAGAAAAGTAGTGATTTTTTAAAAGA
65 TGATCATTAAGAAAAGTAATGATTTTTTAAAAGA
24473593 AAAAAATATA
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
112 61 0.69
113 24 0.27
114 3 0.03
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.39
Consensus pattern (113 bp):
GAAAATTTAGATTTTGAAAACAACGTTTTGATTTTTTTTCTCAACTATTTCGAAATAAAAGCTTT
GATCATTAAGAAAAGTAATGATTTTTTAAAAGACGGAAAAAAACAAGA
Found at i:24473687 original size:156 final size:156
Alignment explanation
Indices: 24473496--24473909 Score: 552
Period size: 156 Copynumber: 2.6 Consensus size: 156
24473486 AAAAACAAGA
* *
24473496 GAAAGTTTAGATTTTTAAAACAAACTTTTGATTTTTTTCTCAACTATTTCGAAATAAAAGCTTTG
1 GAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTT-TCAACTATTTCGAAATAAAAGCTTTG
* * *
24473561 ATCATTAAGAAAAGTAGTGA-TTTTTTAAAAGAAAAAAATATAAA-TTTTAGATTTTTAAAAAT-
65 ATCTTTAAGAAAAGTAGTGATTTTTTTAAAA-AAAAAAAGAAAAAGTTTT-GATTTTTAAAAATA
* * *
24473623 AAAAATATGTTTTTTTAATCATTTTAAAG
128 AAAAAAATATTTTTTTAATAATTTTAAAG
*
24473652 GAAAGTATAAATTTTTAAAACAAAATTTTGATTTTTTTTTCAACTATTTCGAAATAAAAGCTTT-
1 GAAAGTTTAAATTTTTAAAACAAAATTTTGA-TTTTTTTTCAACTATTTCGAAATAAAAGCTTTG
*
24473716 ATTCTTTAAGAAAAGTAGTGATTTTTTTAATAAAAAAAAAGAAAAAGTTTTTATTTTTAAAAATA
65 A-TCTTTAAGAAAAGTAGTGATTTTTTTAA-AAAAAAAAAGAAAAAGTTTTGATTTTTAAAAAT-
*
24473781 AAAAAAAATATTTTTTTAGTAATTTTAAAG
127 AAAAAAAATATTTTTTTAATAATTTTAAAG
* * * *
24473811 GAAAAGTTTAAATTTTTAAAATAAAGTTTTGA-TCTTTTTCAACTATTTCGAAAT-AAAGTTTTG
1 G-AAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCGAAATAAAAGCTTTG
* * *
24473874 ATTTTTAAGAAAAGTAGTTATTTTTTTAAAATAAAA
65 ATCTTTAAGAAAAGTAGTGATTTTTTTAAAAAAAAA
24473910 CTTTAATTTT
Statistics
Matches: 230, Mismatches: 19, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
155 1 0.00
156 77 0.33
157 71 0.31
158 28 0.12
159 26 0.11
160 27 0.12
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.43
Consensus pattern (156 bp):
GAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCGAAATAAAAGCTTTGA
TCTTTAAGAAAAGTAGTGATTTTTTTAAAAAAAAAAAGAAAAAGTTTTGATTTTTAAAAATAAAA
AAAATATTTTTTTAATAATTTTAAAG
Found at i:24473884 original size:157 final size:156
Alignment explanation
Indices: 24473496--24473909 Score: 552
Period size: 157 Copynumber: 2.6 Consensus size: 156
24473486 AAAAACAAGA
* *
24473496 GAAAGTTTAGATTTTTAAAACAAACTTTTGATTTTTTTCTCAACTATTTCGAAATAAAAGCTTTG
1 GAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTT-TCAACTATTTCGAAATAAAAGCTTTG
** * *
24473561 ATCATTAAGAAAAGTAGTGA-TTTTTTAAAAGAAAAAAATATAAATTTTAGATTTTTAAAAATAA
65 ATTTTTAAGAAAAGTAGTGATTTTTTTAAAAGAAAAAAAGAAAAATTTTAGATTTTTAAAAATAA
* * *
24473625 AAATATGTTTTTTTAATCATTTTAAAG
130 AAAAATATTTTTTTAATAATTTTAAAG
*
24473652 GAAAGTATAAATTTTTAAAACAAAATTTTGATTTTTTTTTCAACTATTTCGAAATAAAAGCTTT-
1 GAAAGTTTAAATTTTTAAAACAAAATTTTGA-TTTTTTTTCAACTATTTCGAAATAAAAGCTTTG
*
24473716 ATTCTTTAAGAAAAGTAGTGATTTTTTTAATAA-AAAAAAAGAAAAAGTTTT-TATTTTTAAAAA
65 ATT-TTTAAGAAAAGTAGTGATTTTTTTAA-AAGAAAAAAAGAAAAA-TTTTAGATTTTTAAAAA
*
24473779 TAAAAAAAAATATTTTTTTAGTAATTTTAAAG
127 T--AAAAAAATATTTTTTTAATAATTTTAAAG
* * * *
24473811 GAAAAGTTTAAATTTTTAAAATAAAGTTTTGA-TCTTTTTCAACTATTTCGAAAT-AAAGTTTTG
1 G-AAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCGAAATAAAAGCTTTG
* *
24473874 ATTTTTAAGAAAAGTAGTTATTTTTTTAAAATAAAA
65 ATTTTTAAGAAAAGTAGTGATTTTTTTAAAAGAAAA
24473910 CTTTAATTTT
Statistics
Matches: 230, Mismatches: 18, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
155 2 0.01
156 71 0.31
157 74 0.32
158 30 0.13
159 26 0.11
160 27 0.12
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.43
Consensus pattern (156 bp):
GAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCGAAATAAAAGCTTTGA
TTTTTAAGAAAAGTAGTGATTTTTTTAAAAGAAAAAAAGAAAAATTTTAGATTTTTAAAAATAAA
AAAATATTTTTTTAATAATTTTAAAG
Found at i:24474032 original size:12 final size:12
Alignment explanation
Indices: 24474015--24474039 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24474005 CATGGCCAAC
24474015 ATAGAAGGATGA
1 ATAGAAGGATGA
24474027 ATAGAAGGATGA
1 ATAGAAGGATGA
24474039 A
1 A
24474040 GATTTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16
Consensus pattern (12 bp):
ATAGAAGGATGA
Found at i:24475616 original size:20 final size:20
Alignment explanation
Indices: 24475591--24475629 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
24475581 TTGTTTCTTC
24475591 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
24475611 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
24475630 AAATAACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Done.