Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 87 of 214
Found at i:24757629 original size:21 final size:22
Alignment explanation
Indices: 24757579--24757630 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
24757569 AAAGAAAAAC
* * *
24757579 CCTTACACCCATCACATCCTAA
1 CCTTTCACCCATCAAATCCAAA
24757601 CCTTTCACCCATCAAAT-CAAA
1 CCTTTCACCCATCAAATCCAAA
*
24757622 CTTTTCACC
1 CCTTTCACC
24757631 TAGAAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.31, C:0.42, G:0.00, T:0.27
Consensus pattern (22 bp):
CCTTTCACCCATCAAATCCAAA
Found at i:24757739 original size:22 final size:22
Alignment explanation
Indices: 24757711--24757760 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
24757701 TCAAAACAAA
24757711 AACCTTTCACCCATCAAATCCT
1 AACCTTTCACCCATCAAATCCT
*
24757733 AACCTTTCACCCATCACATCCT
1 AACCTTTCACCCATCAAATCCT
*
24757755 AGCCTT
1 AACCTT
24757761 CTCTTTACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.28, C:0.42, G:0.02, T:0.28
Consensus pattern (22 bp):
AACCTTTCACCCATCAAATCCT
Found at i:24763778 original size:69 final size:69
Alignment explanation
Indices: 24763655--24763815 Score: 216
Period size: 69 Copynumber: 2.3 Consensus size: 69
24763645 ATAGTCCGTC
* * * *
24763655 GGGATAGTAAACACAAGGATTACGAGGTGTAAGATCATAGCTCAACTATGGCAACCAATGGAGTC
1 GGGACAGTAAACACAAGGATTACGAGGTGTAAGATCATAACTCAACAATAGCAACCAATGGAGTC
*
24763720 TTTT
66 TATT
** * *
24763724 GGGACAGTAAACACAAGGATTGTGATGTGTAAG-TCCATAACTCGACAATAGCAACCAATGGAGT
1 GGGACAGTAAACACAAGGATTACGAGGTGTAAGAT-CATAACTCAACAATAGCAACCAATGGAGT
24763788 CTATT
65 CTATT
*
24763793 GGGACAGTAAACACAGGGATTAC
1 GGGACAGTAAACACAAGGATTAC
24763816 TATAATAGCC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
68 1 0.01
69 78 0.99
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (69 bp):
GGGACAGTAAACACAAGGATTACGAGGTGTAAGATCATAACTCAACAATAGCAACCAATGGAGTC
TATT
Found at i:24764879 original size:33 final size:33
Alignment explanation
Indices: 24764837--24764901 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
24764827 TTAGCCTTGA
24764837 TAAGTTCATACGATATTATTTTTGTGTATTTTT
1 TAAGTTCATACGATATTATTTTTGTGTATTTTT
*
24764870 TAAGTTCATATGATATTATTTTTGTGTATTTT
1 TAAGTTCATACGATATTATTTTTGTGTATTTT
24764902 GATAATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.25, C:0.05, G:0.12, T:0.58
Consensus pattern (33 bp):
TAAGTTCATACGATATTATTTTTGTGTATTTTT
Found at i:24766598 original size:23 final size:26
Alignment explanation
Indices: 24766548--24766602 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 26
24766538 GAAAAATAAC
*
24766548 ATATGAAACAGTTTTAAAGAATATAT
1 ATATGAAACAGTTTGAAAGAATATAT
24766574 ATATGAAA-A-TTTGAAAGATATATAT
1 ATATGAAACAGTTTGAAAGA-ATATAT
24766599 ATAT
1 ATAT
24766603 AATAATTTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 8 0.30
25 11 0.41
26 8 0.30
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (26 bp):
ATATGAAACAGTTTGAAAGAATATAT
Found at i:24766602 original size:25 final size:24
Alignment explanation
Indices: 24766548--24766611 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 24
24766538 GAAAAATAAC
*
24766548 ATATGAAACAGTTTTAAAGAATATAT
1 ATATGAAA-A-TTTGAAAGAATATAT
24766574 ATATGAAAATTTGAAAGATATATAT
1 ATATGAAAATTTGAAAGA-ATATAT
24766599 ATAT-AATAATTTG
1 ATATGAA-AATTTG
24766612 CAATAAATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
24 10 0.29
25 17 0.49
26 8 0.23
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (24 bp):
ATATGAAAATTTGAAAGAATATAT
Found at i:24767091 original size:25 final size:25
Alignment explanation
Indices: 24767049--24767115 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 25
24767039 TTTTTATCAA
24767049 AAAAAATAAAAATAATAAAGAAAGG
1 AAAAAATAAAAATAATAAAGAAAGG
* *
24767074 AAAAAATATAAAAT-ATAAATAAAGT
1 AAAAAATA-AAAATAATAAAGAAAGG
24767099 AAAAAGATAACAAATAA
1 AAAAA-ATAA-AAATAA
24767116 GTAGCTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
25 23 0.64
26 12 0.33
27 1 0.03
ACGTcount: A:0.75, C:0.01, G:0.07, T:0.16
Consensus pattern (25 bp):
AAAAAATAAAAATAATAAAGAAAGG
Found at i:24770935 original size:50 final size:50
Alignment explanation
Indices: 24770820--24771062 Score: 369
Period size: 50 Copynumber: 4.8 Consensus size: 50
24770810 AATAATAATA
* * * ** *
24770820 TGCCAAAGCCATGTCCCAGACATGGTCTTACATAGAATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
24770871 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
24770921 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
24770971 TGCCAACGCCATGTCCCAAACATGCTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
24771021 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
24771063 TTACCCAAAT
Statistics
Matches: 175, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 144 0.82
51 31 0.18
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:24773493 original size:9 final size:9
Alignment explanation
Indices: 24773479--24773511 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
24773469 AACTCTTTTA
24773479 TTATTTATT
1 TTATTTATT
24773488 TTATTTATT
1 TTATTTATT
24773497 TTATATTA-T
1 TTAT-TTATT
24773506 TTATTT
1 TTATTT
24773512 TAAACTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.09
9 18 0.78
10 3 0.13
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTATTTATT
Found at i:24773503 original size:23 final size:24
Alignment explanation
Indices: 24773477--24773717 Score: 113
Period size: 28 Copynumber: 9.6 Consensus size: 24
24773467 AAAACTCTTT
24773477 TATTATTTATTTT-ATTTATTTTA
1 TATTATTTATTTTAATTTATTTTA
** *
24773500 TATTATTTATTTTAAACTGTTTTACA
1 TATTATTTATTTTAATTTATTTT--A
*
24773526 TATTATTTATTTTAATTTTTTTCTCATA
1 TATTATTTATTTTAA-TTTATT-T--TA
** *
24773554 TATTATTTATTTTAAACTATTATA
1 TATTATTTATTTTAATTTATTTTA
*
24773578 TATATATGTTATCTTTTAAATTT-TTATA
1 TAT-TAT-TTA--TTTT-AATTTATTTTA
* * *
24773606 TATTATTT-TTTAAAAATTGTTTTA
1 TATTATTTATTT-TAATTTATTTTA
*
24773630 TTATTACTTATTTTAAGTTT-TTTTA
1 -TATTATTTATTTTAA-TTTATTTTA
* *
24773655 TATATTTTTATTTGAA---ACTTTT-
1 TAT-TATTTATTTTAATTTA-TTTTA
24773677 TATTATTTATTTTGAATTGT-TTTTA
1 TATTATTTATTTT-AATT-TATTTTA
24773702 TAAATTATTTATTTTA
1 T--ATTATTTATTTTA
24773718 TATTGTTGTA
Statistics
Matches: 167, Mismatches: 23, Indels: 53
0.69 0.09 0.22
Matches are distributed among these distances:
21 8 0.05
22 5 0.03
23 24 0.14
24 22 0.13
25 27 0.16
26 27 0.16
27 21 0.13
28 29 0.17
29 3 0.02
30 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (24 bp):
TATTATTTATTTTAATTTATTTTA
Found at i:24773505 original size:14 final size:14
Alignment explanation
Indices: 24773482--24773567 Score: 56
Period size: 14 Copynumber: 6.3 Consensus size: 14
24773472 TCTTTTATTA
*
24773482 TTTATTTTATTTAT
1 TTTATATTATTTAT
24773496 TTTATATTATTTAT
1 TTTATATTATTTAT
* * *
24773510 TTTAAACT-GTT-T
1 TTTATATTATTTAT
**
24773522 TACATATTATTTAT
1 TTTATATTATTTAT
24773536 TTTA-ATT-TTT-T
1 TTTATATTATTTAT
24773547 TCTCATATATTATTTAT
1 T-T--TATATTATTTAT
24773564 TTTA
1 TTTA
24773568 AACTATTATA
Statistics
Matches: 53, Mismatches: 11, Indels: 16
0.66 0.14 0.20
Matches are distributed among these distances:
11 2 0.04
12 9 0.17
13 7 0.13
14 26 0.49
15 3 0.06
16 4 0.08
17 2 0.04
ACGTcount: A:0.27, C:0.05, G:0.01, T:0.67
Consensus pattern (14 bp):
TTTATATTATTTAT
Found at i:24773565 original size:28 final size:26
Alignment explanation
Indices: 24773498--24773737 Score: 169
Period size: 26 Copynumber: 9.4 Consensus size: 26
24773488 TTATTTATTT
24773498 TATATTATTTATTTTAAACTGTTTTA
1 TATATTATTTATTTTAAACTGTTTTA
* ** *
24773524 CATATTATTTATTTTAATTTTTTTCTCA
1 TATATTATTTATTTTAAACTGTTT-T-A
* *
24773552 TATATTATTTATTTTAAACTATTATA
1 TATATTATTTATTTTAAACTGTTTTA
24773578 TATA-TATGTTATCTTTTAAA-T-TTTTA
1 TATATTAT-TTA--TTTTAAACTGTTTTA
* *
24773604 TATATTATTT-TTTAAAAATTGTTTTA
1 TATATTATTTATTT-TAAACTGTTTTA
* ** *
24773630 T-TATTACTTATTTTAAGTTTTTTTA
1 TATATTATTTATTTTAAACTGTTTTA
*
24773655 TATATT-TTTATTTGAAAC---TTT-
1 TATATTATTTATTTTAAACTGTTTTA
* *
24773676 T-TATTATTTATTTTGAATTGTTTTTA
1 TATATTATTTATTTTAAACTG-TTTTA
* * * *
24773702 TAAATTATTTATTTTATATTGTTGTA
1 TATATTATTTATTTTAAACTGTTTTA
24773728 TATATTATTT
1 TATATTATTT
24773738 TGTTTTGTTT
Statistics
Matches: 169, Mismatches: 27, Indels: 36
0.73 0.12 0.16
Matches are distributed among these distances:
20 4 0.02
21 10 0.06
22 3 0.02
23 3 0.02
24 3 0.02
25 32 0.19
26 65 0.38
27 22 0.13
28 27 0.16
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (26 bp):
TATATTATTTATTTTAAACTGTTTTA
Found at i:24773678 original size:49 final size:50
Alignment explanation
Indices: 24773476--24773737 Score: 220
Period size: 54 Copynumber: 5.2 Consensus size: 50
24773466 AAAAACTCTT
*
24773476 TTATTATTTATTTT-ATTTATTT-TATATTATTTATTTTAAACTGTTTTA
1 TTATTATTTATTTTAATTTTTTTATATATTATTTATTTTAAACTGTTTTA
* * *
24773524 CATATTATTTATTTTAATTTTTTTCTCATATATTATTTATTTTAAACTATTATA
1 -TTATTATTTATTTTAA-TTTTTT-T-ATATATTATTTATTTTAAACTGTTTTA
* * *
24773578 -TATATATGTTATCTTTTAA-ATTTTTATATATTATTT-TTTAAAAATTGTTTTA
1 TTAT-TAT-TTA--TTTTAATTTTTTTATATATTATTTATTT-TAAACTGTTTTA
* *
24773630 TTATTACTTATTTTAAGTTTTTTTATATATT-TTTATTTGAAAC---TTT-
1 TTATTATTTATTTTAA-TTTTTTTATATATTATTTATTTTAAACTGTTTTA
* * * *
24773676 TTATTATTTATTTTGAATTGTTTTTATAAATTATTTATTTTATATTGTTGTA
1 TTATTATTTATTTT-AATT-TTTTTATATATTATTTATTTTAAACTGTTTTA
24773728 TATATTATTT
1 T-TATTATTT
24773738 TGTTTTGTTT
Statistics
Matches: 172, Mismatches: 19, Indels: 40
0.74 0.08 0.17
Matches are distributed among these distances:
46 15 0.09
47 16 0.09
48 9 0.05
49 19 0.11
50 7 0.04
51 28 0.16
52 26 0.15
53 15 0.09
54 31 0.18
56 6 0.03
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (50 bp):
TTATTATTTATTTTAATTTTTTTATATATTATTTATTTTAAACTGTTTTA
Found at i:24773699 original size:22 final size:22
Alignment explanation
Indices: 24773620--24773699 Score: 56
Period size: 24 Copynumber: 3.4 Consensus size: 22
24773610 ATTTTTTAAA
24773620 AATTGTTTTATTATTACTTATTTT-
1 AATTGTTTTATTA-T--TTATTTTG
* *
24773644 AAGTTTTTTTATATATTTTTATTTG
1 AA-TTGTTTTAT-TATTTAT-TTTG
*
24773669 AAACT-TTTTATTATTTATTTTG
1 -AATTGTTTTATTATTTATTTTG
24773691 AATTGTTTT
1 AATTGTTTT
24773700 TATAAATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
21 3 0.07
22 8 0.18
23 9 0.20
24 11 0.24
25 10 0.22
26 4 0.09
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.66
Consensus pattern (22 bp):
AATTGTTTTATTATTTATTTTG
Found at i:24773708 original size:27 final size:26
Alignment explanation
Indices: 24773678--24773737 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
24773668 GAAACTTTTT
*
24773678 ATTATTTATTTTGA-ATTGTTTTTATAA
1 ATTATTTATTTT-ATATTG-TTGTATAA
*
24773705 ATTATTTATTTTATATTGTTGTATAT
1 ATTATTTATTTTATATTGTTGTATAA
24773731 ATTATTT
1 ATTATTT
24773738 TGTTTTGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (26 bp):
ATTATTTATTTTATATTGTTGTATAA
Found at i:24776743 original size:44 final size:44
Alignment explanation
Indices: 24776680--24777534 Score: 216
Period size: 44 Copynumber: 18.9 Consensus size: 44
24776670 CATTATGGTG
* *
24776680 AATCTTATCTCCCTGAAGTTGTAGCGGAGCAGATTAAAGCCACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * **
24776724 AATCTTATCCCCCTAAAGTTGTAGTGG-GCCAGATTGAAGTTACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAG-CAGATTAAAGCCACT
* * * ** *
24776768 AGTCTTATCTCCCTGAAA-TTGCAGTGGAGCAGACTAAAGATAGCG
1 AATCTTATCTCCCT-AAAGTTGTAGTGGAGCAGATTAAAGCCA-CT
* * * * * * * *
24776813 AATCTTATTTCCTTGAAGTTGTAGTGGAACTGATTGAAGCTATAAATT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGC----CACT
* * * * ** * *
24776861 GCAGATCTTATCTCTCTGAAGTTGCAGTAGAATAGATCATAG-CA--
1 --A-ATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * ** * * **
24776905 AACCTTATCTCCCTGAAGTTGCAGTAAAGCAGGTTGAAGTTAC-
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * * ** * * *
24776948 AAGTCTTATCTTCTTGAAGTTGCAGCAGAGCAGACTAAAGACAGCG
1 AA-TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCA-CT
* * * * * * *
24776994 AATCTTATTTCCCTGAAGTTGCAATGGAACAGATTGAAGCTACAAGTTGCA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGC--C-A----CT
* * * * * ** *
24777045 AACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * ** * * ** * *
24777089 AATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACA
1 AA-TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* ** * * * ** *
24777134 AACCTCT-TCTCCCTGAAA-TTACATTAGAGTAGATCGAAGACAC-
1 AATCT-TATCTCCCT-AAAGTTGTAGTGGAGCAGATTAAAGCCACT
** * ** *
24777177 AATCCTTATCTCCCGGAAGTTGTAGTGGAGCAGGATAAAAATACACA
1 AAT-CTTATCTCCCTAAAGTTGTAGTGGAGCA-GAT-TAAAGCCACT
* * * * * ***
24777224 AAACTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATT--AAAGCCACT
* * * * * *
24777270 AATCTTTTCTCCCTAAAGTTGCAGTAGAGCAAATTGAAGACAGGCTACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATT--A-A-A-GCCACT
* * * * *
24777319 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * * *
24777363 AATCTCATCTTCCTGAAGTTGTAGTGGAGCATATTAAAGCCACA
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * * * ** *
24777407 AACCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATACC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * *
24777451 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCTACT
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
* * * * *
24777495 AATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATAAAAGC
1 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGC
24777535 GACAAATCCT
Statistics
Matches: 617, Mismatches: 157, Indels: 74
0.73 0.19 0.09
Matches are distributed among these distances:
41 29 0.05
42 2 0.00
43 8 0.01
44 293 0.47
45 105 0.17
46 72 0.12
47 5 0.01
48 3 0.00
49 35 0.06
50 1 0.00
51 64 0.10
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCACT
Found at i:24776851 original size:89 final size:89
Alignment explanation
Indices: 24776682--24777531 Score: 292
Period size: 88 Copynumber: 9.4 Consensus size: 89
24776672 TTATGGTGAA
* * * * * * *
24776682 TCTTATCTCCCTGAAGTTGTAGCGGAGCAGATTAAAGCCA-CTAATCTTATCCCCCTAAAGTTGT
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
**
24776746 AGTGGGCCAGATTGAAGTTACTAG
66 AGTGGAACAGATTGAAGTTACTAG
* * * * * *
24776770 TCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTTCCTTGAAGTTGT
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
* *
24776835 AGTGGAACTGATTGAAGCTATAAATTGCAG
66 AGTGGAACAGATTGAAG-T-T--ACT--AG
* * ** * * *
24776865 ATCTTATCTCTCTGAAGTTGCA--GTAG-A-A-TAGATCATAGCAAACCTTATCTCCCTGAAGTT
1 -TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTA-AAGACAGCGAATCTTATCTCCCTGAAGTT
* * *
24776925 GCAGT-AAAGCAGGTTGAAGTTACAAG
64 GCAGTGGAA-CAGATTGAAGTTACTAG
* * * *
24776951 TCTTATCTTCTTGAAGTTGCAGCAGAGCAGACTAAAGACAGCGAATCTTATTTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
* * *
24777016 AATGGAACAGATTGAAGCTACAAG
66 AGTGGAACAGATTGAAGTTACTAG
* ** * ** * *
24777040 TTGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CCAATTCTTATCTCCTT
1 -T------CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAA-TCTTATCTCCCT
* * ** * * * *
24777104 GAAGTTCCAGCGGAGTAGATCGAAGCTACAAA
58 GAAGTTGCAGTGGAACAGATTGAAGTTACTAG
* * * *** * * *
24777136 CCTCT-TCTCCCTGAAATTACATTAGAGTAGA-TCGAAGACA-C-AATCCTTATCTCCCGGAAGT
1 TCT-TATCTCCCTGAAGTTGCAGCGGAGCAGACT-AAAGACAGCGAAT-CTTATCTCCCTGAAGT
* * ** * * * *
24777197 TGTAGTGGAGCAGGATAAAAATACACAAA
63 TGCAGTGGAACA-GATTGAAGT-TACTAG
* * * ** * * * * * *
24777226 ACTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACTAATCTTTTCTCCCTAAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGA-CAGCGAATCTTATCTCCCTGAAGTTG
* * * * * *
24777291 CAGTAGAGCAAATTGAAGACAGGCTACAAA
65 CAGTGGAACAGATT---GA-A-GTTACTAG
* * * * * *
24777321 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAA-ACCA-CAAATCTCATCTTCCTGAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGA-CAGCGAATCTTATCTCCCTGAAGTTG
* * * * ** * *
24777384 TAGTGGAGCATATTAAAGCCACAAA
65 CAGTGGAACAGATTGAAGTTACTAG
* * * * ** * * * *
24777409 CCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATA-CCAATCTTATCTCCCTAAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
** * *
24777473 AGTGGAGTAGATTGAAGCTACTAA
66 AGTGGAACAGATTGAAGTTACTAG
* * *
24777497 TCCTATCTCCTTGAAGTTGCAGTGGAGCAGA-TAAA
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAA
24777532 AGCGACAAAT
Statistics
Matches: 576, Mismatches: 146, Indels: 81
0.72 0.18 0.10
Matches are distributed among these distances:
85 18 0.03
86 2 0.00
87 6 0.01
88 162 0.28
89 112 0.19
90 38 0.07
91 10 0.02
92 60 0.10
93 35 0.06
94 6 0.01
95 43 0.07
96 84 0.15
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (89 bp):
TCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGAATCTTATCTCCCTGAAGTTGC
AGTGGAACAGATTGAAGTTACTAG
Found at i:24777242 original size:46 final size:45
Alignment explanation
Indices: 24777043--24777532 Score: 248
Period size: 44 Copynumber: 10.9 Consensus size: 45
24777033 CTACAAGTTG
* * * **
24777043 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTAC-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAATACA
* * * * * ** *
24777088 CAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGAT-CGAA-GCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATAC-A
* * * * * * ** *
24777132 CAAACCTCT-TCTCCCTGAAATTACATTAGAGTAGAT-CGAAGACA
1 CAAATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATACA
* *
24777176 C-AATCCTTATCTCCCGGAAGTTGTAGTGGAGCAGGATAAAAATACA
1 CAAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAATACA
* * * *
24777222 CAAAACTTATCTCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAATACA
* * * * * * **
24777268 CTAATCTTTTCTCCCTAAAGTTGCAGTAGAGCAAATTGAAGACAGGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T-AA-AAATAC-A
* * *
24777317 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAA-CCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATACA
* * * * * **
24777361 CAAATCTCATCTTCCTGAAGTTGTAGTGGAGCATAT-TAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATACA
* * * * * *
24777405 CAAACCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATAC-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAAATACA
* * ** *
24777450 C-AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGAT-TGAA-GCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATAC-A
* * *
24777493 CTAATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATAAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAA
24777533 GCGACAAATC
Statistics
Matches: 339, Mismatches: 86, Indels: 40
0.73 0.18 0.09
Matches are distributed among these distances:
41 1 0.00
42 2 0.01
43 9 0.03
44 176 0.52
45 36 0.11
46 75 0.22
47 5 0.01
48 3 0.01
49 32 0.09
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (45 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAATACA
Found at i:24777543 original size:44 final size:43
Alignment explanation
Indices: 24777316--24777563 Score: 223
Period size: 44 Copynumber: 5.6 Consensus size: 43
24777306 AAGACAGGCT
* * *
24777316 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACC
1 ACAAATCCTATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAGCC
* *
24777360 ACAAAT-CTCATCTTCCTGAAGTTGTAGTGGAGCATATTAAAGCC
1 ACAAATCCT-ATC-TCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
* * * **
24777404 ACAAA-CCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGAT
1 ACAAATCC-TATC-TCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
* * * * * *
24777448 ACCAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCT
1 ACAAATCCTATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAGCC
* * *
24777492 ACTAATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATAAAAGCG
1 ACAAATCCTATCTCC-TGAAGTTGCAGTGGAGCAGATTAAAGCC
24777536 ACAAATCCTATAC-CTCTGAAGTTGCAGT
1 ACAAATCCTAT-CTC-CTGAAGTTGCAGT
24777564 AGGTTAGATT
Statistics
Matches: 171, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
43 4 0.02
44 162 0.95
45 5 0.03
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (43 bp):
ACAAATCCTATCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
Found at i:24777555 original size:132 final size:132
Alignment explanation
Indices: 24777319--24777559 Score: 310
Period size: 132 Copynumber: 1.8 Consensus size: 132
24777309 ACAGGCTACA
*
24777319 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCACAAATCTCATCTTCCTGAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCACAAATCTCATCTTCCTGAAGTTG
* * * *
24777384 TAGTGGAGCATATTAAAGCCACAAACCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATA
66 CAGTGGAGCAGATAAAAGCCACAAACCTTATCCTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATA
24777449 CC
131 CC
* * * * * *
24777451 AATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCTACTAATC-CTATC-TCCTTGAAGT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCACAAATCTC-ATCTTCC-TGAAGT
*
24777514 TGCAGTGGAGCAGATAAAAGCGACAAATCC-TATACCT-CTGAAGTTG
64 TGCAGTGGAGCAGATAAAAGCCACAAA-CCTTAT-CCTCCTGAAGTTG
24777560 CAGTAGGTTA
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
131 4 0.04
132 85 0.91
133 4 0.04
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (132 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACCACAAATCTCATCTTCCTGAAGTTG
CAGTGGAGCAGATAAAAGCCACAAACCTTATCCTCCTGAAGTTGTAGTGGAGCAGGTTGAAGATA
CC
Found at i:24779213 original size:49 final size:51
Alignment explanation
Indices: 24779127--24779314 Score: 172
Period size: 54 Copynumber: 3.6 Consensus size: 51
24779117 TCCATTTAAT
* *
24779127 TTATTTATTTAATAAAACTCTTTTAT-TATTATTTATTTTAAGTTTTT-TATA
1 TTATTTATTT-AT-AAACTGTTTTATATATTATTTATTTTAAATTTTTATATA
* *
24779178 TTATTTATTT-TAAACTGTTTTACATATTATTTATTTTAATTTTTTTCTCATATA
1 TTATTTATTTATAAACTGTTTTATATATTATTTATTTTAA--ATTTT-T-ATATA
* * * *
24779232 TTATTTATTT-TAAACTATTATATATATGT-TATCTTTTAAATTTTTATATA
1 TTATTTATTTATAAACTGTTTTATATAT-TATTTATTTTAAATTTTTATATA
* *
24779282 TTATTT-TTCTAAAAACTGTTTTATATGTTATTT
1 TTATTTATT-TATAAACTGTTTTATATATTATTT
24779315 TTTAATTATT
Statistics
Matches: 113, Mismatches: 14, Indels: 20
0.77 0.10 0.14
Matches are distributed among these distances:
48 10 0.09
49 18 0.16
50 13 0.12
51 30 0.27
52 5 0.04
54 36 0.32
55 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (51 bp):
TTATTTATTTATAAACTGTTTTATATATTATTTATTTTAAATTTTTATATA
Found at i:24779241 original size:28 final size:26
Alignment explanation
Indices: 24779127--24779314 Score: 140
Period size: 26 Copynumber: 7.2 Consensus size: 26
24779117 TCCATTTAAT
*
24779127 TTATTTATTTAATAAAACTCTTTTAT-TA
1 TTATTTATTT--T-AAACTGTTTTATATA
*
24779155 TTATTTATTTT-AA--GTTTTTTATA
1 TTATTTATTTTAAACTGTTTTATATA
*
24779178 TTATTTATTTTAAACTGTTTTACATA
1 TTATTTATTTTAAACTGTTTTATATA
** *
24779204 TTATTTATTTTAATTTTTTTCTCATATA
1 TTATTTATTTTAAACTGTTT-T-ATATA
* *
24779232 TTATTTATTTTAAACTATTATATATA
1 TTATTTATTTTAAACTGTTTTATATA
* *
24779258 TGT-TATCTTTTAAA-T-TTTTATATA
1 T-TATTTATTTTAAACTGTTTTATATA
* *
24779282 TTATTT-TTCTAAAAACTGTTTTATATG
1 TTATTTATT-T-TAAACTGTTTTATATA
24779309 TTATTT
1 TTATTT
24779315 TTTAATTATT
Statistics
Matches: 130, Mismatches: 18, Indels: 25
0.75 0.10 0.14
Matches are distributed among these distances:
22 5 0.04
23 16 0.12
24 16 0.12
25 4 0.03
26 42 0.32
27 17 0.13
28 30 0.23
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (26 bp):
TTATTTATTTTAAACTGTTTTATATA
Found at i:24779369 original size:26 final size:25
Alignment explanation
Indices: 24779311--24779372 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
24779301 TTTATATGTT
* *
24779311 ATTTTTTAATTATTATTTATTTTAA
1 ATTTTTTTATTATTATTTATTTGAA
* *
24779336 ATTGTTTTATTATTGTTTATTTGAA
1 ATTTTTTTATTATTATTTATTTGAA
24779361 ACTTTTTTTATT
1 A-TTTTTTTATT
24779373 TATTCTGAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
25 22 0.71
26 9 0.29
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.68
Consensus pattern (25 bp):
ATTTTTTTATTATTATTTATTTGAA
Found at i:24779372 original size:45 final size:42
Alignment explanation
Indices: 24779321--24779446 Score: 128
Period size: 45 Copynumber: 2.9 Consensus size: 42
24779311 ATTTTTTAAT
* *
24779321 TATTATTTATTTTAAATTGTTTTAT-TATTGTTTATTTGAAAC
1 TATTATTTATTTTAAATT-TTTTATAAATTATTTATTTGAAAC
* * * *
24779363 TTTTTTTATTTATTCTGAATTTTTTATAAATTATTTATTTTAAAC
1 ---TATTATTTATTTTAAATTTTTTATAAATTATTTATTTGAAAC
*
24779408 TATTATTTATTTTAAATTTTTGTATATATTATTTTATTT
1 TATTATTTATTTTAAATTTTT-TATAAATTA-TTTATTT
24779447 CATTTTCTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
42 18 0.26
43 8 0.12
44 13 0.19
45 29 0.43
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (42 bp):
TATTATTTATTTTAAATTTTTTATAAATTATTTATTTGAAAC
Found at i:24780469 original size:6 final size:6
Alignment explanation
Indices: 24780458--24780500 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
24780448 TAAGTTTCCA
* * * *
24780458 AAAATG AAAATG AAAATG GAAATG GAAATG GAAATG GAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG A
24780501 TCCATTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:24780486 original size:18 final size:18
Alignment explanation
Indices: 24780459--24780500 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
24780449 AAGTTTCCAA
24780459 AAATGAAAATGAAAATGG
1 AAATGAAAATGAAAATGG
* *
24780477 AAATGGAAATGGAAATGG
1 AAATGAAAATGAAAATGG
24780495 AAATGA
1 AAATGA
24780501 TCCATTTGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (18 bp):
AAATGAAAATGAAAATGG
Found at i:24780699 original size:26 final size:27
Alignment explanation
Indices: 24780650--24780712 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
24780640 TATATAAATT
*
24780650 TTAAAATTTTACCAAGGGAAAAAATCA
1 TTAAAATTTTACCAACGGAAAAAATCA
* *
24780677 TTAAAATTTTACCAACGG-TAAAATCG
1 TTAAAATTTTACCAACGGAAAAAATCA
*
24780703 TCAAAATTTT
1 TTAAAATTTT
24780713 GTTTGGGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 15 0.47
27 17 0.53
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.32
Consensus pattern (27 bp):
TTAAAATTTTACCAACGGAAAAAATCA
Found at i:24782096 original size:7 final size:7
Alignment explanation
Indices: 24782084--24782108 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24782074 ATCTGAAACG
24782084 AAAACAT
1 AAAACAT
24782091 AAAACAT
1 AAAACAT
24782098 AAAACAT
1 AAAACAT
24782105 AAAA
1 AAAA
24782109 TTAAACTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAACAT
Found at i:24785000 original size:20 final size:20
Alignment explanation
Indices: 24784932--24785001 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
24784922 ACTCTACTTC
*
24784932 AAGCTCACTCAGCTCAATTTT
1 AAGCTCATTCAGCTC-ATTTT
* *
24784953 TAGCTCA-ACGAGCTCATTCTT
1 AAGCTCATTC-AGCTCATT-TT
*
24784974 -AGTTCATTCAGCTCATTTT
1 AAGCTCATTCAGCTCATTTT
24784993 AAGCTCATT
1 AAGCTCATT
24785002 TTAGTTTGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
19 2 0.05
20 24 0.60
21 14 0.35
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (20 bp):
AAGCTCATTCAGCTCATTTT
Found at i:24785150 original size:28 final size:28
Alignment explanation
Indices: 24785093--24785150 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
24785083 CTGGTCAAAT
* * **
24785093 AATTATTAAGTGTTTTAATTATGTTTTA
1 AATTATTAAGTGTCTTAAATATGTCCTA
*
24785121 AATTATTTAGTGTCTTAAATATGTCCTA
1 AATTATTAAGTGTCTTAAATATGTCCTA
24785149 AA
1 AA
24785151 CTCATACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.50
Consensus pattern (28 bp):
AATTATTAAGTGTCTTAAATATGTCCTA
Found at i:24786416 original size:13 final size:12
Alignment explanation
Indices: 24786382--24786412 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
24786372 GGTTTATTGT
24786382 AAAAAAATTTGA
1 AAAAAAATTTGA
24786394 AAAAAAATTTGA
1 AAAAAAATTTGA
24786406 AAAAAAA
1 AAAAAAA
24786413 ATTTCGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (12 bp):
AAAAAAATTTGA
Found at i:24791688 original size:11 final size:10
Alignment explanation
Indices: 24791672--24791714 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
24791662 TAGCTCAACG
24791672 AGCTCATTCTT
1 AGCTCATT-TT
*
24791683 AGCTCA-TTC
1 AGCTCATTTT
24791692 AGCTCATTTT
1 AGCTCATTTT
24791702 AAGCTCATTTT
1 -AGCTCATTTT
24791713 AG
1 AG
24791715 TTTGCATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 7 0.25
10 5 0.18
11 16 0.57
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (10 bp):
AGCTCATTTT
Found at i:24791695 original size:20 final size:19
Alignment explanation
Indices: 24791642--24791710 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 19
24791632 CTCTACTTCA
*
24791642 AGCTCACTCAGCTCAATTTTT
1 AGCTCATTCAGCTC-A-TTTT
*
24791663 AGCTCA-ACGAGCTCATTCTT
1 AGCTCATTC-AGCTCATT-TT
24791683 AGCTCATTCAGCTCATTTT
1 AGCTCATTCAGCTCATTTT
24791702 AAGCTCATT
1 -AGCTCATT
24791711 TTAGTTTGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
19 4 0.10
20 26 0.62
21 12 0.29
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.36
Consensus pattern (19 bp):
AGCTCATTCAGCTCATTTT
Found at i:24791859 original size:28 final size:28
Alignment explanation
Indices: 24791802--24791859 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
24791792 CTGGTCAAAT
* * **
24791802 AATTATTAAGTGTTTTAATTATGTTTTA
1 AATTATTAAGTGTCTTAAATATGTCCTA
*
24791830 AATTATTTAGTGTCTTAAATATGTCCTA
1 AATTATTAAGTGTCTTAAATATGTCCTA
24791858 AA
1 AA
24791860 CTCATACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.50
Consensus pattern (28 bp):
AATTATTAAGTGTCTTAAATATGTCCTA
Found at i:24794136 original size:13 final size:15
Alignment explanation
Indices: 24794113--24794144 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
24794103 TAAATATATT
24794113 CTTTAGAGTT-AAAA
1 CTTTAGAGTTAAAAA
24794127 CTTT-GAGTTAAAAA
1 CTTTAGAGTTAAAAA
24794141 CTTT
1 CTTT
24794145 CATTTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (15 bp):
CTTTAGAGTTAAAAA
Found at i:24797556 original size:22 final size:21
Alignment explanation
Indices: 24797526--24797570 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
24797516 AAAAGTATAA
*
24797526 TTTTTAATATTTTTACA-AAAT
1 TTTTTAATAATTTTA-ATAAAT
24797547 TTTTTGAATAATTTTAATAAAT
1 TTTTT-AATAATTTTAATAAAT
24797569 TT
1 TT
24797571 CTATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTTAATAATTTTAATAAAT
Found at i:24798832 original size:3 final size:3
Alignment explanation
Indices: 24798826--24798881 Score: 105
Period size: 3 Copynumber: 19.0 Consensus size: 3
24798816 TTTCCATTAG
24798826 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
24798873 TTC TTC TTC
1 TTC TTC TTC
24798882 ATGTAAAGAT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 50 0.96
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:24799288 original size:30 final size:30
Alignment explanation
Indices: 24799252--24799312 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
24799242 CAATGCCATG
24799252 ATAAACAATTGGAGTGTATTCAATATTCTT
1 ATAAACAATTGGAGTGTATTCAATATTCTT
24799282 ATAAACAATTGGAGTGTATTCAATATTCTT
1 ATAAACAATTGGAGTGTATTCAATATTCTT
24799312 A
1 A
24799313 ATATGATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (30 bp):
ATAAACAATTGGAGTGTATTCAATATTCTT
Found at i:24803272 original size:235 final size:235
Alignment explanation
Indices: 24802861--24803330 Score: 922
Period size: 235 Copynumber: 2.0 Consensus size: 235
24802851 ATCAAGGTGC
24802861 AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
1 AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
24802926 TAAAGTCGATATAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
66 TAAAGTCGATATAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
*
24802991 AGACATACTCCGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
131 AGACATACTCAGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
24803056 GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
196 GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
24803096 AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
1 AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
*
24803161 TAAAGTCGATGTAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
66 TAAAGTCGATATAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
24803226 AGACATACTCAGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
131 AGACATACTCAGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
24803291 GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
196 GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
24803331 GACATCACTA
Statistics
Matches: 233, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
235 233 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (235 bp):
AAAAAGAAAAACACTACTTGATATAAACCGATAATCATAACCGAGTAATTTCGTTGATGTCTGAT
TAAAGTCGATATAGTCAAGGTGGTGGCCTAAGTTCCTTTAGAGAATGAACTGAAATAGTTCTTCA
AGACATACTCAGATCATTATTTATTTTTACCCGACCTTTTGATGCAATGTGTTAAGTGGTCAAAA
GTCTGACGTGATCCTTAACACACCTAACTTAGGCCACCTT
Found at i:24805232 original size:18 final size:17
Alignment explanation
Indices: 24805205--24805238 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
24805195 ATGAAGGTGC
24805205 AGATGAGGAAAAAAATA
1 AGATGAGGAAAAAAATA
*
24805222 AGATCGAGGAAGAAAAT
1 AGAT-GAGGAAAAAAAT
24805239 GCGGTCAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.59, C:0.03, G:0.26, T:0.12
Consensus pattern (17 bp):
AGATGAGGAAAAAAATA
Found at i:24809867 original size:17 final size:17
Alignment explanation
Indices: 24809845--24809887 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
24809835 CTTGCCTGAG
24809845 AAAATGTTGAGTTGTGT
1 AAAATGTTGAGTTGTGT
**
24809862 AAAATGTTTGTTTTGTGT
1 AAAATG-TTGAGTTGTGT
24809880 AAAATGTT
1 AAAATGTT
24809888 TGTTAGCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (17 bp):
AAAATGTTGAGTTGTGT
Found at i:24809879 original size:18 final size:18
Alignment explanation
Indices: 24809856--24809891 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
24809846 AAATGTTGAG
24809856 TTGTGTAAAATGTTTGTT
1 TTGTGTAAAATGTTTGTT
24809874 TTGTGTAAAATGTTTGTT
1 TTGTGTAAAATGTTTGTT
24809892 AGCCATCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (18 bp):
TTGTGTAAAATGTTTGTT
Found at i:24828418 original size:736 final size:733
Alignment explanation
Indices: 24826833--24828564 Score: 2736
Period size: 736 Copynumber: 2.4 Consensus size: 733
24826823 TCAATATTTC
* *
24826833 CATGAAGTTTATGAAGGATATTTTTTCCAAGAAGAAATGGCTTAATGAGTATGAGACTATTGCTT
1 CATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAAT-GCTTAGTGAGTATGAGACTATTGCTT
* * ** * *
24826898 TGACAAAAGAGTGTTGTGTGTTCTTACAGAACAAACTACCTTGGAAACTAAAGGACCTTGGAAGC
65 TGACAAAAGAGTGCTGTGTGTTCTTACAGAACAAGCTACCTTCAAAACTAAAGGACCCTGAAAGC
* * * * *
24826963 TTTACGATACCATGTAACATCTGAGAATCTTATTTCGGTGAAGCTTTGTATGACATTTGAGCAAA
130 TTTACGATACCATGTAACATCAGAGAATCTTACTGCGGTGAAGCTTTGTATGACATTGGAGCAAG
* * * *
24827028 CATCAACTTGATGCCCAAATATATTTTCAAACTATTGGGAATAGGTGAAGTAAGAACAACTACTA
195 CATCAAGTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTACTA
* * *
24827093 TGAAACTTCAACTTGCGGATCTTTCGTTAGCATATCCGAAGGAAAAGCTTTGTAGTAGACCGCAA
260 TGAAACTTCAACTTCCGGATCTTTCGTTAGCATATCCGAAGGAAAAGCTTCGTAGTAGACCACAA
* * *
24827158 AGAGCTTTCATGAGCGATACAGAAAATCCAAGGAGTTTGGGTAAGAAGCATTGATACTTGGTTGC
325 AGAGCTTTCATAAGCGATACAAAAAATCCAAGGAGTTTGGGTAAGAAGCATTGATAATTGGTTGC
* * *
24827223 ATTACGATGTGGTAAGATTTTGAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTTAGAAGG
390 ATTACGAAGTGGTAAGATTTTAAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGAGAAGG
*
24827288 AGGAAAGTCAAACAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTGAAAAATATGATGAG
455 AGGAAAGTCAAACAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTAAAAAATATGATGAG
* *
24827353 GTACACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAGAAAAG
520 GTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAAAAAAG
* * * * *
24827418 TAGTCCATATCAATCTAGAGCTCCATATCCTCAAAATCTTGAACAGAATAAGTAGAAACAAGAGG
585 TAGTCCATATCAACCTAGAGCTCCATATCCTCAAAATCCTCAACAGAATAAGCAGAAACAACAGG
* *
24827483 TACAATTTAAGAAGTTCTTGGAAGTTCTAAAGTAACTCAGATCAACATCCTTTTGGTGGAGGCTT
650 TACAATTTAAGAAGTTCTTGGAAGTTCTAAAGTAACTCACATCAACATCCTATTGGTGGAGGCTT
24827548 TAGAATAAATGCCCAACTA
715 TAGAATAAATGCCCAACTA
24827567 CATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGACTTAGTGAGTATGAGACTATTGCTT
1 CATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATG-CTTAGTGAGTATGAGACTATTGCTT
* * *
24827632 TGACAAAAGAGTGCAGTGTTTTCTTACAGAACAAGCTACGTTTCAAAACTAAAGGACCCTGAAAG
65 TGACAAAAGAGTGCTGTGTGTTCTTACAGAACAAGCTAC-CTTCAAAACTAAAGGACCCTGAAAG
* *
24827697 CTTTACGATACCATGTAACATCAGAGAATATTACTGCGGTGAAGCTTTGTATGACATTGGAGCAG
129 CTTTACGATACCATGTAACATCAGAGAATCTTACTGCGGTGAAGCTTTGTATGACATTGGAGCAA
24827762 GCATCAAGTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTACT
194 GCATCAAGTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTACT
* * * *
24827827 ATGACACTTCAACTTCCGGATCTTTCGTTAGCATATCCTGAGGGAAAAGCTTCGTATTAGACCAT
259 ATGAAACTTCAACTTCCGGATCTTTCGTTAGCATATCC-GAAGGAAAAGCTTCGTAGTAGACCAC
24827892 AAAGAGC-TTCGATAAGCGATACAAAAAATCCAAGGAGTTTGGGTAAGAAGCATTG-TGAATTGG
323 AAAGAGCTTTC-ATAAGCGATACAAAAAATCCAAGGAGTTTGGGTAAGAAGCATTGAT-AATTGG
*
24827955 TTGCATTACGAAGTGGTAAGATTTTAAAACCCAAGGAGGTTGTGATTGAAGATGAGCGTACTGAG
386 TTGCATTACGAAGTGGTAAGATTTTAAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGAG
* * * *
24828020 AAGGAGGAAAGTCAACCAAAATTTGAAGTTTTTATACTGAAAAAATAATATGCTAAAAAATATGA
451 AAGGAGGAAAGTCAAACAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTAAAAAATATGA
* *
24828085 TGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACTCTTTTTTCAGATTTACTTCTTTAAA
516 TGAGGTAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAAA
* * *
24828150 AAAGTTGTCCATATCAACCTGGAGTTCCATATCCTCAAAATCCTCAACAGAATAAGCAGAAACAA
581 AAAGTAGTCCATATCAACCTAGAGCTCCATATCCTCAAAATCCTCAACAGAATAAGCAGAAACAA
* *
24828215 CTGGTACAATTTAAGAAGTTCTTGGATGTTCTAAAGTAACTTCACATCAACAT-CTCATTGGTGG
646 CAGGTACAATTTAAGAAGTTCTTGGAAGTTCTAAAGTAAC-TCACATCAACATCCT-ATTGGTGG
* *
24828279 ATGCTTTAGAATAGATGCCCAACTA
709 AGGCTTTAGAATAAATGCCCAACTA
* *
24828304 CTTGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGCTTTAGTGACTATGAGACTATTGCTT
1 CATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGC-TTAGTGAGTATGAGACTATTGCTT
* **
24828369 TGACAAAAGAGAGCTGTCCGTTCTTACAGAACAAGCTACC-TCTAAAACTAAAGGACCCT-AGAA
65 TGACAAAAGAGTGCTGTGTGTTCTTACAGAACAAGCTACCTTC-AAAACTAAAGGACCCTGA-AA
*
24828432 GCTTTACGATACCATGTAACATCAGAGAATCTTACTGCGGTGAAGCTTTGTACGACATTGGAGCA
128 GCTTTACGATACCATGTAACATCAGAGAATCTTACTGCGGTGAAGCTTTGTATGACATTGGAGCA
*
24828497 AGCATCAAGTTGATGCCCAAATCTATTTTCAAACTGTTGGGAATAGGTGAAGTAAGACCCACTAC
193 AGCATCAAGTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTAC
24828562 TAT
258 TAT
24828565 AAAAGTTGAT
Statistics
Matches: 917, Mismatches: 71, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
733 1 0.00
734 96 0.10
735 182 0.20
736 502 0.55
737 136 0.15
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (733 bp):
CATGAAGTTTATGAAGGATATTTTGTCCAAGAAGAAATGCTTAGTGAGTATGAGACTATTGCTTT
GACAAAAGAGTGCTGTGTGTTCTTACAGAACAAGCTACCTTCAAAACTAAAGGACCCTGAAAGCT
TTACGATACCATGTAACATCAGAGAATCTTACTGCGGTGAAGCTTTGTATGACATTGGAGCAAGC
ATCAAGTTGATGCCCAAATCTATTTTCAAACTATTGGGAATAGGTGAAGTAAGACCCACTACTAT
GAAACTTCAACTTCCGGATCTTTCGTTAGCATATCCGAAGGAAAAGCTTCGTAGTAGACCACAAA
GAGCTTTCATAAGCGATACAAAAAATCCAAGGAGTTTGGGTAAGAAGCATTGATAATTGGTTGCA
TTACGAAGTGGTAAGATTTTAAAACCCAAGGAGGTTGTGATTGAAGATGAGCCTACTGAGAAGGA
GGAAAGTCAAACAAAAGTTGAAGTTCTTATACTGAAAAAATAAGATGCTAAAAAATATGATGAGG
TAAACCCTAAACTAGTAAATTCTAAGAAGCTAACACCTTTTTCAGATTTACTTCTTTAAAAAAGT
AGTCCATATCAACCTAGAGCTCCATATCCTCAAAATCCTCAACAGAATAAGCAGAAACAACAGGT
ACAATTTAAGAAGTTCTTGGAAGTTCTAAAGTAACTCACATCAACATCCTATTGGTGGAGGCTTT
AGAATAAATGCCCAACTA
Found at i:24829905 original size:19 final size:19
Alignment explanation
Indices: 24829878--24829916 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
24829868 GAACAAAGTA
24829878 TAAAATTCTCACACAAAAC
1 TAAAATTCTCACACAAAAC
*
24829897 TAAATTTCTCACACAAAAC
1 TAAAATTCTCACACAAAAC
24829916 T
1 T
24829917 CAGAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (19 bp):
TAAAATTCTCACACAAAAC
Found at i:24830598 original size:75 final size:75
Alignment explanation
Indices: 24830518--24830663 Score: 177
Period size: 75 Copynumber: 1.9 Consensus size: 75
24830508 TTATGAAAAC
** * * * *
24830518 ACATAATGCAGGTCTTAAAGGATCCTA-ATGTATTAATGCAAAGCGTTAACTAAAGACGCATTCA
1 ACATAATGCACATCTTAAAAGAT-CTAGATGTATTAATGCAAAACATTAAATAAAGACGCATTCA
*
24830582 ATAAACAAGAA
65 ACAAACAAGAA
* * * *
24830593 ACATAATGCACATTTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAA
1 ACATAATGCACATCTTAAAAGATCTAGATGTATTAATGCAAAACATTAAATAAAGACGCATTCAA
24830658 CAAACA
66 CAAACA
24830664 CTCATAAATT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
74 2 0.03
75 57 0.97
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.26
Consensus pattern (75 bp):
ACATAATGCACATCTTAAAAGATCTAGATGTATTAATGCAAAACATTAAATAAAGACGCATTCAA
CAAACAAGAA
Found at i:24830888 original size:268 final size:268
Alignment explanation
Indices: 24830411--24830931 Score: 1024
Period size: 268 Copynumber: 1.9 Consensus size: 268
24830401 TCATAAAAAC
24830411 AACATATTTAATAACACTCATGCACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
1 AACATATTTAATAACACTCATGCACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
24830476 AAATTAACAAATGAGATGATTTAATGCATGACTTATGAAAACACATAATGCAGGTCTTAAAGGAT
66 AAATTAACAAATGAGATGATTTAATGCATGACTTATGAAAACACATAATGCAGGTCTTAAAGGAT
*
24830541 CCTAATGTATTAATGCAAAGCGTTAACTAAAGACGCATTCAATAAACAAGAAACATAATGCACAT
131 CCTAATGTATTAATGCAAAGAGTTAACTAAAGACGCATTCAATAAACAAGAAACATAATGCACAT
24830606 TTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACACTCATAA
196 TTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACACTCATAA
24830671 ATTAAATG
261 ATTAAATG
24830679 AACATATTTAATAACACTCATGCACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
1 AACATATTTAATAACACTCATGCACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
24830744 AAATTAACAAATGAGATGATTTAATGCATGACTTATGAAAACACATAATGCAGGTCTTAAAGGAT
66 AAATTAACAAATGAGATGATTTAATGCATGACTTATGAAAACACATAATGCAGGTCTTAAAGGAT
*
24830809 CCTAATGTATTAATGTAAAGAGTTAACTAAAGACGCATTCAATAAACAAGAAACATAATGCACAT
131 CCTAATGTATTAATGCAAAGAGTTAACTAAAGACGCATTCAATAAACAAGAAACATAATGCACAT
24830874 TTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACA
196 TTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACA
24830932 AAACACATAA
Statistics
Matches: 251, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
268 251 1.00
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (268 bp):
AACATATTTAATAACACTCATGCACATAAATTAAATGAACATGCAACTTAAACCATACTTGAAGT
AAATTAACAAATGAGATGATTTAATGCATGACTTATGAAAACACATAATGCAGGTCTTAAAGGAT
CCTAATGTATTAATGCAAAGAGTTAACTAAAGACGCATTCAATAAACAAGAAACATAATGCACAT
TTTAAAAGATGTAGATGTATTAATGCAAAACATTAAATAAAGATGCATTTAACAAACACTCATAA
ATTAAATG
Found at i:24853654 original size:40 final size:40
Alignment explanation
Indices: 24853556--24853818 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
24853546 TCCTCGTTCA
* * * * *
24853556 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
24853595 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24853635 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24853675 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
24853715 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
24853755 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
24853795 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24853819 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:24861650 original size:36 final size:39
Alignment explanation
Indices: 24861504--24861703 Score: 234
Period size: 39 Copynumber: 5.3 Consensus size: 39
24861494 TCCTCGTTCA
* * * * *
24861504 AATGCCTTCGGGACAT-AGCCGGTTTTAGTAACTCACAC-
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
* *
24861542 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
24861582 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
24861621 AA-GCCTTCGGAC-TAACCC-GATTTAATAACTCGCACG
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
* * *
24861657 AATGCC-TCGGACTTAACCCGGA-TTAGTATCTCGCACA
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
*
24861694 AAGGCCTTCG
1 AATGCCTTCG
24861704 ATCTTAATCG
Statistics
Matches: 145, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
36 26 0.18
37 32 0.22
38 31 0.21
39 47 0.32
40 9 0.06
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:24873681 original size:40 final size:40
Alignment explanation
Indices: 24873604--24873827 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
24873594 GCTACTCGTT
* * *
24873604 CAAATGCCTTCAGGACAT-AGCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
24873643 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
24873683 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
24873723 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
24873762 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
24873803 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
24873828 CATCATTCGA
Statistics
Matches: 165, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.30
40 101 0.61
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:24873746 original size:79 final size:79
Alignment explanation
Indices: 24873604--24873827 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 79
24873594 GCTACTCGTT
* * *
24873604 CAAATGCCTTCAGGACAT-AGCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
24873667 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
24873683 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
24873747 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * * *
24873762 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
24873826 GA
64 GA
24873828 CATCATTCGA
Statistics
Matches: 128, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
78 3 0.02
79 73 0.57
80 50 0.39
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:24875019 original size:56 final size:56
Alignment explanation
Indices: 24874952--24875071 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
24874942 TATTAGTTTA
24874952 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
24875008 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
24875064 TTGCCCAT
1 TTGCCCAT
24875072 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:24876219 original size:13 final size:13
Alignment explanation
Indices: 24876203--24876235 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
24876193 TTTAATTAAA
*
24876203 TTAGTTAATTAGT
1 TTAGATAATTAGT
24876216 TTAGATAATTAGT
1 TTAGATAATTAGT
24876229 TTA-ATAA
1 TTAGATAA
24876236 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:24879442 original size:40 final size:40
Alignment explanation
Indices: 24879344--24879606 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
24879334 TCCTCGTTCA
* * * * *
24879344 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
24879383 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24879423 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24879463 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
24879503 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
24879543 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
24879583 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24879607 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:24887388 original size:40 final size:40
Alignment explanation
Indices: 24887290--24887552 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
24887280 TCCTCGTTCA
* * * * *
24887290 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
24887329 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24887369 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
24887409 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
24887449 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
24887489 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
24887529 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24887553 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:24898092 original size:889 final size:889
Alignment explanation
Indices: 24896073--24898268 Score: 3250
Period size: 889 Copynumber: 2.5 Consensus size: 889
24896063 AGTAATTAAT
* * * * *
24896073 ATTTTGATGTCTGTTTGCTTAATTAAGTAAAAAGAACTAAATCGTAAATGCTGCAAAACTTAAGC
1 ATTTTGATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGC-AAAGTTAAGC
* *
24896138 ACTATTGGTTTATTTGTATTAAATAGATATAAAATGATGAATTAAGGGATTTATATAGTAATTAG
65 ACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTAG
* ** * *
24896203 AACTATTTAGATTATGGTGGACAGTTA-TGCCTTTTAATTATGAAATTTTAATTGTTCTTAAAGG
130 ACCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAGG
* *
24896267 TTAAAATAGTAAATTAATTGATGAATC-----AAAACAAAAAA-AAAAGCATGTGGTCATCTACT
195 TTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTACT
* * *
24896326 GTGCAAGAATACCATTTTCAAA-TCAAATATCTTTCCAACAATTGGTATCAAGAGTCAGGTTGTG
260 GTGCAAGAATACTATTTTCAAACT-GAATATTTTTCCAACAATTGGTATCAAGAGTCAGGTTGTG
* * * *
24896390 CTATGTTTATGATGTAAAACGAGACCGAATCTTTCTCTTCATCTTGTTTGATTAATATTTAATAA
324 CTATGTTTATGGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATAA
24896455 GATGTGACATTCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATA
389 GATGTGACATTCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATA
*
24896520 TATTTGTTATATAATAATTAATTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAAATTGTATACTA
454 TATTTGTTATATAATAATTAATTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAAACTGTATACTA
* *
24896585 TCATCTCCACATAGAATTATTTTTTATTTTTGGAATTCTTCTGAGCTAGAAACGGACATAGGATA
519 TCATCTCCACATAGAATTATTTTTTATTTTTGGAATTCTTCTGAGCTAGAAACAGACATAGGACA
* *
24896650 TAAATGTAATTTTTCCAAAAAGGAGTCCATGATGAGGAGAAGATAGAGCGATGGCGGTCGAAGAC
584 TAAATGTAATTTTTCCAAAAAGGAGTCCAAGATGAGGAGAAGATAGAGCGATGACGGTCGAAGAC
* * *
24896715 ACAAAGAAAAGGAATGTCTTATAATGAAAAACTATGTAATTTTTTATTTTTCATTTATTTTCTAA
649 AC-----AAAGGAATGCCTTATAATGAAAAACTATATAA-TTTTTATTTTTCATTTATTTTATAA
** * * * ** *
24896780 AAATAGAATGATAGAGACATTGGCTGATAATTTTATTTTGTTACCCATTTGTAACAACTCGTTTT
708 AAATAGAACAATAGAGACATTAGCTGACAATTTTATTTTGTTACCCATCTACAACAACTCGTTTC
* * * *
24896845 TAGTGGTATCAAAAACAGTGGTTTTAGGACCATGATTTCAATCAATGAGTCAGTATTATGCTATT
773 CAGTGGTATAAAAAACAGTGGTTTCAGGACCACGATTTCAATCAATGAGTCAGTATTATGCTATT
* *
24896910 TATTTAATATTTATGAGTCTATTATAGTGTCGTAAAAAAGTTTGGTTTAAAA
838 TATTTAATATTTATAAGTCTATTAAAGTGTCGTAAAAAAGTTTGGTTTAAAA
*
24896962 ATTTTGATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCATAAAAGCTGCTAAAGTTAAGC
1 ATTTTGATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGC-AAAGTTAAGC
*
24897027 ACTACAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTAG
65 ACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTAG
* *
24897092 ACCTATTTAGATTATGGTGGACCGTTAGTGGGTTTTAATTATGAAATTTTAGTTATTTTTAAAGG
130 ACCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAGG
* * *
24897157 TTAAAACAGTAAATCAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTCCT
195 TTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTACT
* * * * * *
24897222 ATGCAAGAATACTGTTTTCAAACTGGATATTTTTCCAGCAATTGGTATCAAGAGTTACGTTGTGC
260 GTGCAAGAATACTATTTTCAAACTGAATATTTTTCCAACAATTGGTATCAAGAGTCAGGTTGTGC
* *
24897287 TATGTTTATGGTGTAAAATGAGACCGAATCTCTCTCTTCATTTTATTTGATTAATATTTGATAAG
325 TATGTTTATGGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATAAG
*
24897352 ATGTGACATCCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATAT
390 ATGTGACATTCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATAT
* * *
24897417 ATTTGTTATATAATAATTATTTTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAGACTGTATATTA
455 ATTTGTTATATAATAATTA-ATTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAAACTGTATACTA
** * * * *
24897482 TCATCTCCGTATAGGATTATTTTTTATTTTTTGAATTCTTGTGAGCTAGAAACAGACGTAGGACA
519 TCATCTCCACATAGAATTATTTTTTATTTTTGGAATTCTTCTGAGCTAGAAACAGACATAGGACA
* * * *
24897547 TAAATGTAATTTTTTCAAACAGGATTCCAAGATGAGGAGAAGAT-GAAGCGATGATGGTCGAAGA
584 TAAATGTAATTTTTCCAAAAAGGAGTCCAAGATGAGGAGAAGATAG-AGCGATGACGGTCGAAGA
* * *
24897611 TAC-AAGGAATGCCTTATGATGAAAAACTGTATAA-TTTT-TTTTTCATTTATTTTATAAAAATA
648 CACAAAGGAATGCCTTATAATGAAAAACTATATAATTTTTATTTTTCATTTATTTTATAAAAATA
*
24897673 GAACAATAGAGACATTAGCTGACAATTTTATTTTGTTACCTATCTACAACAACTCGTTTCCAGTG
713 GAACAATAGAGACATTAGCTGACAATTTTATTTTGTTACCCATCTACAACAACTCGTTTCCAGTG
* * * * *
24897738 GTATAAAAAATAGTGGTTTCGGGACCACGATTTCGATCAATGAGTTAGTATTAT-ATCATTTATT
778 GTATAAAAAACAGTGGTTTCAGGACCACGATTTCAATCAATGAGTCAGTATTATGCT-ATTTATT
*
24897802 TAATATTTATAAGTCTATTAAAGTGTCGTAATAAAGTTTGGTTTAAAA
842 TAATATTTATAAGTCTATTAAAGTGTCGTAAAAAAGTTTGGTTTAAAA
* * * *
24897850 ATTTTGCTTTTTTGGTTGCTTAATTAAGTAAAAAGGACGAAATCGTAAAAGCTACAAGAGTTAAG
1 ATTTTG-ATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGCAA-AGTTAAG
* * * **
24897915 CACTATGGGCTTATTTGTATTAAATTGATATAAAATCATGAATTAAGATATTTATATAGTAATTA
64 CACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTA
*
24897980 GACCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAA
129 GACCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAG
* * *
24898045 GTTAAAATACTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCTTCTGC
194 GTTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTAC
* *
24898110 TGTGCAAGAATA-TCATTTTCAAACCGAATATTTTTCCAACAATTGGTATCAAAAGTCAGGTTGT
259 TGTGCAAGAATACT-ATTTTCAAACTGAATATTTTTCCAACAATTGGTATCAAGAGTCAGGTTGT
* *
24898174 GCTATGTTTATTGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGAAA
323 GCTATGTTTATGGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATA
* *
24898239 AGATGTTACATTCTTGTAGTTATTCGCATG
388 AGATGTGACATTCTTGTAGTTATTTGCATG
24898269 GGAATGTATG
Statistics
Matches: 1176, Mismatches: 117, Indels: 28
0.89 0.09 0.02
Matches are distributed among these distances:
887 1 0.00
888 186 0.16
889 522 0.44
890 55 0.05
891 27 0.02
895 11 0.01
896 217 0.18
897 157 0.13
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (889 bp):
ATTTTGATGTTTGGTTGCTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGCAAAGTTAAGCA
CTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTAGA
CCTATTTAGATTATGGTGGACAGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAGGT
TAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTACTG
TGCAAGAATACTATTTTCAAACTGAATATTTTTCCAACAATTGGTATCAAGAGTCAGGTTGTGCT
ATGTTTATGGTGTAAAACGAGACCGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATAAGA
TGTGACATTCTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATATA
TTTGTTATATAATAATTAATTTTTTGCCAAGGTTGTGGTTCTTAGGAAATAAACTGTATACTATC
ATCTCCACATAGAATTATTTTTTATTTTTGGAATTCTTCTGAGCTAGAAACAGACATAGGACATA
AATGTAATTTTTCCAAAAAGGAGTCCAAGATGAGGAGAAGATAGAGCGATGACGGTCGAAGACAC
AAAGGAATGCCTTATAATGAAAAACTATATAATTTTTATTTTTCATTTATTTTATAAAAATAGAA
CAATAGAGACATTAGCTGACAATTTTATTTTGTTACCCATCTACAACAACTCGTTTCCAGTGGTA
TAAAAAACAGTGGTTTCAGGACCACGATTTCAATCAATGAGTCAGTATTATGCTATTTATTTAAT
ATTTATAAGTCTATTAAAGTGTCGTAAAAAAGTTTGGTTTAAAA
Found at i:24898355 original size:15 final size:15
Alignment explanation
Indices: 24898335--24898365 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24898325 AAACCAAAAA
24898335 AAATAAAAGTCCAAT
1 AAATAAAAGTCCAAT
*
24898350 AAATAACAGTCCAAT
1 AAATAAAAGTCCAAT
24898365 A
1 A
24898366 CAGCCCAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.16, G:0.06, T:0.19
Consensus pattern (15 bp):
AAATAAAAGTCCAAT
Found at i:24901717 original size:19 final size:19
Alignment explanation
Indices: 24901693--24901739 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
24901683 AACGTCTCTT
*
24901693 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
24901712 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
24901731 TATGCATTA
1 TTTGCATTA
24901740 AAATCCACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:24907751 original size:20 final size:20
Alignment explanation
Indices: 24907726--24907766 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
24907716 GTACAGAAAA
24907726 GTTCAAGCTGCGATATCTGG
1 GTTCAAGCTGCGATATCTGG
24907746 GTTCAAGCTGCGATATCTGG
1 GTTCAAGCTGCGATATCTGG
24907766 G
1 G
24907767 GCACCTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.29
Consensus pattern (20 bp):
GTTCAAGCTGCGATATCTGG
Found at i:24909079 original size:142 final size:143
Alignment explanation
Indices: 24908804--24909204 Score: 558
Period size: 143 Copynumber: 2.8 Consensus size: 143
24908794 CTTGGCATTT
24908804 CAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
1 CAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
* * * * *
24908869 ATTGAAGCCGCCAAACCTCATCTCCCTA-AAGTTGCAGCGGAGTAGACTGAAGACTACGAATCTT
66 ATTGAAGCCACC-AGCCTTATCTCCC-AGAAGTTGCAGCGGAGTAGATTGAAGACTACAAATCTT
* *
24908933 ATTTCCCTAGTGTTG
129 ATTTCCCTAGCGTTA
* * * *
24908948 TAGTGGAATAGATTAAAGCTACAAATTATGGCGGATCTTAT-TTCCTGAAGTTGCAGTGGAGTAG
1 CAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
*
24909012 ATTAAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAAGAC-AGCAAATCTTA
66 ATTGAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAAGACTA-CAAATCTTA
* *
24909076 TTTCTCTGGCGTTA
130 TTTCCCTAGCGTTA
* * * *
24909090 CAATGGAACATATTAGAGCTAAAAATTATGG-ATGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
1 CAGTGGAACAGATTAAAGCTACAAATTATGGCA-GATCTTATCTTCCTGAAGTTGCAGTGGAGCA
* *
24909154 GATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA
65 GATTGAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAA
24909205 ATTATCAATT
Statistics
Matches: 228, Mismatches: 25, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
141 2 0.01
142 87 0.38
143 101 0.44
144 38 0.17
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (143 bp):
CAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
ATTGAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAAGACTACAAATCTTAT
TTCCCTAGCGTTA
Found at i:24909253 original size:143 final size:140
Alignment explanation
Indices: 24908804--24909258 Score: 492
Period size: 143 Copynumber: 3.2 Consensus size: 140
24908794 CTTGGCATTT
*
24908804 CAGTGGAACAGATTA-AAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
1 CAGTGGAATAGATTAGAAGCTACAAATTATGG-AGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
* * * * *
24908868 GATTGAAGCCGCCAAACCTCATCTCCCTAAAGTTGCAGCGGAGTAGACTGAAGACTACGAATCTT
65 GATTGAAGCCACC-AGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGA-TAC-AATCTT
* * *
24908933 ATTTCCCT-AGTGTTG
127 A-TTCCTTGA-AGTTA
* * *
24908948 TAGTGGAATAGATTA-AAGCTACAAATTATGGCGGATCTTAT-TTCCTGAAGTTGCAGTGGAGTA
1 CAGTGGAATAGATTAGAAGCTACAAATTATGG-AGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
* * *
24909011 GATTAAAGCCACCAGCCTTATCTCCCAGAAGTTGCAGCGGAGTAGATTGAAGACAGCAAATCTTA
65 GATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGATA-C-AATCTTA
* **
24909076 TTTCTCTGGCGTTA
128 TTCCT-TGAAGTTA
* * * *
24909090 CAATGGAACATATTAG-AGCTAAAAATTATGGATGATCTTATCTTCCTGAAGTTGCAGTGGAGCA
1 CAGTGGAATAGATTAGAAGCTACAAATTATGGA-GATCTTATCTTCCTGAAGTTGCAGTGGAGCA
*
24909154 GATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAA-ATTATCAATTCTT
65 GATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGA-TA-CAA-TCTT
*
24909218 ATCTCCTTGAAGTTC
127 AT-TCCTTGAAGTTA
* *
24909233 CAGCGGAGTAGA-TAGAAGCTACAAAT
1 CAGTGGAATAGATTAGAAGCTACAAAT
24909259 CTCTTCTCTC
Statistics
Matches: 261, Mismatches: 40, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
141 4 0.02
142 86 0.33
143 130 0.50
144 41 0.16
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (140 bp):
CAGTGGAATAGATTAGAAGCTACAAATTATGGAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAG
ATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGTAGATTGAAGATACAATCTTATTC
CTTGAAGTTA
Found at i:24909546 original size:11 final size:12
Alignment explanation
Indices: 24909529--24909568 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
24909519 CGGGCCCAAT
24909529 TAAATAAACAAA
1 TAAATAAACAAA
24909541 -AAATAAACCAAA
1 TAAATAAA-CAAA
*
24909553 TAAAAAAACAAA
1 TAAATAAACAAA
24909565 TAAA
1 TAAA
24909569 AGTCCAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 7 0.28
12 12 0.48
13 6 0.24
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (12 bp):
TAAATAAACAAA
Found at i:24927050 original size:27 final size:27
Alignment explanation
Indices: 24927020--24927197 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24927010 ATATTGAGTC
* * * *
24927020 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24927047 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24927074 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24927102 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24927129 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24927156 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24927183 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24927198 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24927159 original size:82 final size:81
Alignment explanation
Indices: 24927041--24927196 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24927031 TGCTATATAA
* *
24927041 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24927106 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24927123 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24927187 CACTTAGTGC
65 CACTTAGTGC
24927197 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24934192 original size:27 final size:27
Alignment explanation
Indices: 24934162--24934339 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24934152 ATATTGAGTC
* * * *
24934162 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24934189 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24934216 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24934244 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24934271 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24934298 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24934325 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24934340 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24934301 original size:82 final size:81
Alignment explanation
Indices: 24934183--24934338 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24934173 TGCTATATAA
* *
24934183 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24934248 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24934265 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24934329 CACTTAGTGC
65 CACTTAGTGC
24934339 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24938084 original size:16 final size:17
Alignment explanation
Indices: 24938056--24938092 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
24938046 CAAATATTAT
24938056 AAAAGGAAGAAG-AAAG
1 AAAAGGAAGAAGAAAAG
24938072 AAAATGGAA-AAGAAAAG
1 AAAA-GGAAGAAGAAAAG
24938089 AAAA
1 AAAA
24938093 AATAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (17 bp):
AAAAGGAAGAAGAAAAG
Found at i:24938621 original size:15 final size:15
Alignment explanation
Indices: 24938603--24938632 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24938593 TGGAAAGGAG
24938603 CTTTTTCTCAAGGGT
1 CTTTTTCTCAAGGGT
24938618 CTTTTTCTCAAGGGT
1 CTTTTTCTCAAGGGT
24938633 TTTATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (15 bp):
CTTTTTCTCAAGGGT
Found at i:24940116 original size:47 final size:48
Alignment explanation
Indices: 24940041--24940176 Score: 170
Period size: 47 Copynumber: 2.9 Consensus size: 48
24940031 ACTAGTAATT
* * **
24940041 AATGGTTGTTTTGATACTTAAAATATGCTAACATCCTGAATTCAG-TT-
1 AATGGCTGTTTTGATATTTAAAATATGCTAACATCCCAAATT-AGATTG
* *
24940088 AGTGGCTGTTTTGATATTTAAAATATGCTAACATCCCAAATTGGATTG
1 AATGGCTGTTTTGATATTTAAAATATGCTAACATCCCAAATTAGATTG
* *
24940136 AATGTC-GTTTTGATATTTAAACTATGCTAACATCCCAAATT
1 AATGGCTGTTTTGATATTTAAAATATGCTAACATCCCAAATT
24940177 TAATTATCCA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 1 0.01
47 73 0.94
48 4 0.05
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (48 bp):
AATGGCTGTTTTGATATTTAAAATATGCTAACATCCCAAATTAGATTG
Found at i:24947419 original size:24 final size:24
Alignment explanation
Indices: 24947390--24947438 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
24947380 TTTAATTTAA
24947390 TATTTAAT-AATCTTATATAATTTT
1 TATTTAATAAAT-TTATATAATTTT
*
24947414 TATTTATTGAAATTTATATAATTTT
1 TATTTAAT-AAATTTATATAATTTT
24947439 CTTTTAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 7 0.32
25 12 0.55
26 3 0.14
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (24 bp):
TATTTAATAAATTTATATAATTTT
Found at i:24948177 original size:22 final size:21
Alignment explanation
Indices: 24948149--24948206 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
24948139 ATGCAATCGC
*
24948149 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCTTAG
*
24948170 AAGATATGACTTTGTAATTTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
24948193 AGATTTGATTTGTA
1 AGATATGATTTGTA
24948207 GATACCTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 15 0.47
23 11 0.34
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:24975263 original size:26 final size:27
Alignment explanation
Indices: 24975225--24975289 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
24975215 ACTAGTATAC
24975225 ATATTTCTTATAATTTCCAATTA-TTTT
1 ATATTT-TTATAATTTCCAATTATTTTT
*
24975252 ATATTTTTATAATTTTCAATTATTTTT
1 ATATTTTTATAATTTCCAATTATTTTT
*
24975279 ATACTTTTATA
1 ATATTTTTATA
24975290 TTTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 15 0.43
27 20 0.57
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (27 bp):
ATATTTTTATAATTTCCAATTATTTTT
Found at i:24975292 original size:26 final size:26
Alignment explanation
Indices: 24975232--24975289 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
24975222 TACATATTTC
*
24975232 TTATAATTTCCAATTATTTTATATTT
1 TTATAATTTCCAATTATTTTATACTT
*
24975258 TTATAATTTTCAATTATTTTTATACTT
1 TTATAATTTCCAATTA-TTTTATACTT
24975285 TTATA
1 TTATA
24975290 TTTAAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 15 0.52
27 14 0.48
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (26 bp):
TTATAATTTCCAATTATTTTATACTT
Found at i:24975298 original size:26 final size:26
Alignment explanation
Indices: 24975232--24975299 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
24975222 TACATATTTC
** *
24975232 TTATAATTTCCAATTATTTTATATTT
1 TTATAATTTAAAATTATTTTATACTT
**
24975258 TTATAATTTTCAATTATTTTTATACTT
1 TTATAATTTAAAATTA-TTTTATACTT
24975285 TTAT-ATTTAAAATTA
1 TTATAATTTAAAATTA
24975300 AATATTAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 24 0.65
27 13 0.35
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (26 bp):
TTATAATTTAAAATTATTTTATACTT
Found at i:24976194 original size:30 final size:31
Alignment explanation
Indices: 24976123--24976199 Score: 88
Period size: 30 Copynumber: 2.5 Consensus size: 31
24976113 GTAAAAAAAA
* *
24976123 TTACCAACTTTCAAGGGGTCCCAAAAGTTTTT
1 TTACCAACTTTTAA-GGGTCCCAAAACTTTTT
* *
24976155 TT--TAGCTTTTAAGGG-CCCAAAACTTTTT
1 TTACCAACTTTTAAGGGTCCCAAAACTTTTT
24976183 TTACCAACTTTTAAGGG
1 TTACCAACTTTTAAGGG
24976200 ACGAAATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
28 14 0.38
29 3 0.08
30 18 0.49
32 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (31 bp):
TTACCAACTTTTAAGGGTCCCAAAACTTTTT
Found at i:24977181 original size:18 final size:16
Alignment explanation
Indices: 24977147--24977191 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
24977137 TACCCAAAAT
24977147 CAAAACCC-AATAACC
1 CAAAACCCAAATAACC
24977162 CAATAACCCAAATGAACC
1 CAA-AACCCAAAT-AACC
24977180 CAAAACACCAAA
1 CAAAAC-CCAAA
24977192 CAGTAGCCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 3 0.12
16 5 0.19
17 6 0.23
18 12 0.46
ACGTcount: A:0.56, C:0.36, G:0.02, T:0.07
Consensus pattern (16 bp):
CAAAACCCAAATAACC
Found at i:24978755 original size:29 final size:28
Alignment explanation
Indices: 24978723--24978801 Score: 77
Period size: 29 Copynumber: 2.8 Consensus size: 28
24978713 TTAACATCTT
*
24978723 TAATTTATTTCAACTTATTTCAATATTGC
1 TAATTTATTTAAACTTATTTCAATATT-C
* * * *
24978752 TAATTTATTTAAATTTGTTTTAATATTT
1 TAATTTATTTAAACTTATTTCAATATTC
* *
24978780 TAATTTATATTATATTTATTTC
1 TAATTTAT-TTAAACTTATTTC
24978802 TTAAATTATG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 8 0.20
29 33 0.80
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (28 bp):
TAATTTATTTAAACTTATTTCAATATTC
Found at i:24982967 original size:9 final size:9
Alignment explanation
Indices: 24982953--24982990 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
24982943 CTATGAGTTA
24982953 AAAAAAATC
1 AAAAAAATC
24982962 AAAAAAATC
1 AAAAAAATC
24982971 --AAAAATC
1 AAAAAAATC
*
24982978 AAAAAAATG
1 AAAAAAATC
24982987 AAAA
1 AAAA
24982991 TGAAAATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
7 7 0.27
9 19 0.73
ACGTcount: A:0.79, C:0.08, G:0.03, T:0.11
Consensus pattern (9 bp):
AAAAAAATC
Found at i:24982976 original size:16 final size:16
Alignment explanation
Indices: 24982955--24982990 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
24982945 ATGAGTTAAA
24982955 AAAAATCAAAAAAATC
1 AAAAATCAAAAAAATC
*
24982971 AAAAATCAAAAAAATG
1 AAAAATCAAAAAAATC
24982987 AAAA
1 AAAA
24982991 TGAAAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.78, C:0.08, G:0.03, T:0.11
Consensus pattern (16 bp):
AAAAATCAAAAAAATC
Found at i:24983037 original size:7 final size:6
Alignment explanation
Indices: 24983002--24983040 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
24982992 GAAAATGATG
*
24983002 GAAAAA G-AAAA GAAAAT GAAAAA GAAAAA GAAAAA -AAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAA
24983041 GGAGAGGCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
5 9 0.30
6 21 0.70
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:24983039 original size:27 final size:27
Alignment explanation
Indices: 24982978--24983041 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
24982968 ATCAAAAATC
* * **
24982978 AAAAAAATGAAAATGAAAATGATGGAA
1 AAAAAAAAGAAAATGAAAAAGATAAAA
* *
24983005 AAAGAAAAGAAAATGAAAAAGAAAAAGA
1 AAAAAAAAGAAAATGAAAAAGATAAA-A
24983033 AAAAAAAAG
1 AAAAAAAAG
24983042 GAGAGGCCAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (27 bp):
AAAAAAAAGAAAATGAAAAAGATAAAA
Found at i:24985424 original size:44 final size:43
Alignment explanation
Indices: 24985376--24985511 Score: 121
Period size: 44 Copynumber: 3.1 Consensus size: 43
24985366 AGACCCCAGC
24985376 CTTATCTCATTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGAT
1 CTTATCTC-TTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGAT
* ** * * * * * * *
24985420 CTTATCTTCCTGTATTAGCAGCGAAGTAGATCGAAGATAGCA-AGC
1 CTTATC-TCTTG-AGCAGCAGTGGAGTAGGTTGAAAATAACAGA-T
*
24985465 CTTATCTCCTTGAGCAGTAGTGGAGTAGGTTGAAAATAACAGAT
1 CTTATCT-CTTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGAT
24985509 CTT
1 CTT
24985512 GTCTTCCTGT
Statistics
Matches: 66, Mismatches: 21, Indels: 10
0.68 0.22 0.10
Matches are distributed among these distances:
44 33 0.50
45 33 0.50
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (43 bp):
CTTATCTCTTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGAT
Found at i:24985448 original size:45 final size:45
Alignment explanation
Indices: 24985311--24986065 Score: 231
Period size: 45 Copynumber: 17.0 Consensus size: 45
24985301 GCAGTAGTGG
* * *
24985311 AGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGA
1 AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGTATTAGCAGCGA
* * * *** * * ** * *
24985356 AGTAGATCGAAGACCCCAG-CCTTATC-TCAT-TGAGCAGCAGTGG
1 AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGT-ATTAGCAGCGA
*
24985399 AGTAGGTTGAAAATAACAGATCTTATCTTCCTGTATTAGCAGCGA
1 AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGTATTAGCAGCGA
* * * * ** * * *
24985444 AGTAGATCGAAGATAGCA-AGCCTTATC-TCCT-TGAGCAGTAGTGG
1 AGTAGGTTGAAAATAGCAGA-TCTTATCTTCCTGT-ATTAGCAGCGA
* * *
24985488 AGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAGCGA
1 AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGTATTAGCAGCGA
* * * * ** * *
24985533 AGTA-GATCAAAGATAGCA-AGCCTTATCTCCCTG-AACAGCAGTGG
1 AGTAGGTTGAAA-ATAGCAGA-TCTTATCTTCCTGTATTAGCAGCGA
*
24985577 AGTAGGTTGAAAATAGCAGATCTTGA-CTTCCTATATTAGCAGCGA
1 AGTAGGTTGAAAATAGCAGATCTT-ATCTTCCTGTATTAGCAGCGA
* * * * * ** * *
24985622 AGTAGATCGAAGATAGCA-AGCCTTATCTCCCTG-AGCAGCAGTGG
1 AGTAGGTTGAAAATAGCAGA-TCTTATCTTCCTGTATTAGCAGCGA
* * *
24985666 AGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGGCAGCGA
1 AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGTATTAGCAGCGA
* * * ** * ** *** * * *
24985711 AGTAGATCGAAGA-CCCCGGCCTTATC-TCTCTG-GGCAGTAGTGG
1 AGTAGGTTGAAAATAGCAGATCTTATCTTC-CTGTATTAGCAGCGA
* * **
24985754 AGTAGGTTGAAAATAACAGATATTATCTTCCTGTATTAGCAATGA
1 AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGTATTAGCAGCGA
* * ** * * * * ** * *
24985799 AGTAGATCGAGGATAGGA-AGCTTTTTCTCCCTG-AGCAGCAGTGG
1 AGTAGGTTGAAAATAGCAGATC-TTATCTTCCTGTATTAGCAGCGA
* * *
24985843 AGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGGCAGCGA
1 AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGTATTAGCAGCGA
* * * ** * ** *** * *
24985888 AGTAGATCGAAGA-CCCCGGCCTTATC-TCTCTG-GGCAGCAGTGG
1 AGTAGGTTGAAAATAGCAGATCTTATCTTC-CTGTATTAGCAGCGA
* * **
24985931 AGTAGGTTGAAAATAACAGATATTATCTTCCTGTATTAGCAATGA
1 AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGTATTAGCAGCGA
* * ** * * * * ** * *
24985976 AGTAGATCGAGGATAGGA-AGCTTTTTCTCCCTG-AGCAGCAGTGG
1 AGTAGGTTGAAAATAGCAGATC-TTATCTTCCTGTATTAGCAGCGA
* * *
24986020 AGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGGCAGCGA
1 AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGTATTAGCAGCGA
24986065 A
1 A
24986066 TCAGATTGAA
Statistics
Matches: 470, Mismatches: 207, Indels: 66
0.63 0.28 0.09
Matches are distributed among these distances:
42 1 0.00
43 56 0.12
44 202 0.43
45 209 0.44
46 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (45 bp):
AGTAGGTTGAAAATAGCAGATCTTATCTTCCTGTATTAGCAGCGA
Found at i:24985503 original size:89 final size:89
Alignment explanation
Indices: 24985285--24986339 Score: 1075
Period size: 89 Copynumber: 11.9 Consensus size: 89
24985275 CGAAGACCCC
* *
24985285 AGCCTTATCTCCCTGAGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
** *
24985350 CAGCGAAGTAGATCGAAGA-CCCC
66 CAGCGAAGTAGATCGAAGATAGCA
** * * *
24985373 AGCCTTATCTCATTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATCTTATCTTCCTGTATTAG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
24985438 CAGCGAAGTAGATCGAAGATAGCA
66 CAGCGAAGTAGATCGAAGATAGCA
* * *
24985462 AGCCTTATCTCCTTGAGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
*
24985527 CAGCGAAGTAGATCAAAGATAGCA
66 CAGCGAAGTAGATCGAAGATAGCA
* * * *
24985551 AGCCTTATCTCCCTGAACAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGACTTCCTATATTAG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
24985616 CAGCGAAGTAGATCGAAGATAGCA
66 CAGCGAAGTAGATCGAAGATAGCA
*
24985640 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
** *
24985705 CAGCGAAGTAGATCGAAGA-CCCC
66 CAGCGAAGTAGATCGAAGATAGCA
* * * * * * * *
24985728 GGCCTTATCTCTCTGGGCAGTAGTGGAGTAGGTTGAAAATAACAGATATTATCTTCCTGTATTAG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
** * *
24985793 CAATGAAGTAGATCGAGGATAGGA
66 CAGCGAAGTAGATCGAAGATAGCA
* * *
24985817 AGCTTTTTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
** *
24985882 CAGCGAAGTAGATCGAAGA-CCCC
66 CAGCGAAGTAGATCGAAGATAGCA
* * * * * * *
24985905 GGCCTTATCTCTCTGGGCAGCAGTGGAGTAGGTTGAAAATAACAGATATTATCTTCCTGTATTAG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
** * *
24985970 CAATGAAGTAGATCGAGGATAGGA
66 CAGCGAAGTAGATCGAAGATAGCA
* * *
24985994 AGCTTTTTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
* * *
24986059 CAGCGAA-TCAGATTGAAGACA-CC
66 CAGCGAAGT-AGATCGAAGATAGCA
** ** * * ** ** ** *
24986082 AGCCTTGCCTCCCTGAGTTTGCAGTGGTGCAGACTGAAAGCAGTTGATCTTGCCTTCCTGTATTG
1 AGCCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTG
* * * * * *
24986147 GCAACGAAGCAGATTGGAGACA-CC
65 GCAGCGAAGTAGATCGAAGATAGCA
** ** * * ** * * *
24986171 AGCCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTGAAAACAGTAGATCTTGCCTTCCTGTATTG
1 AGCCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTG
**
24986236 GCAGCGAAACAGATCGAAGA-A-CA
65 GCAGCGAAGTAGATCGAAGATAGCA
** * * ** * * *
24986259 CCAGCCTTGCCTCGCTGAGTTTA-CAGTGGAGTAGACTAAAAACAGCAGATCTTGTCTTTCTGTA
1 --AGCCTTATCTCCCTGAG--CAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTA
* * *
24986323 CTGGCAACGAAGCAGAT
62 TTGGCAGCGAAGTAGAT
24986340 TGACTACACT
Statistics
Matches: 823, Mismatches: 135, Indels: 16
0.84 0.14 0.02
Matches are distributed among these distances:
88 238 0.29
89 518 0.63
90 65 0.08
91 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (89 bp):
AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
CAGCGAAGTAGATCGAAGATAGCA
Found at i:24985836 original size:177 final size:177
Alignment explanation
Indices: 24985285--24986266 Score: 1225
Period size: 177 Copynumber: 5.5 Consensus size: 177
24985275 CGAAGACCCC
* * *
24985285 AGCCTTATCTCCCTGAGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
24985350 CAGCGAAGTAGATCGAAGACCCCAGCCTTATCTCAT-TGAGCAGCAGTGGAGTAGGTTGAAAATA
66 CAGCGAAGTAGATCGAAGACCCCAGCCTTATCTC-TCTGAGCAGCAGTGGAGTAGGTTGAAAATA
* *
24985414 ACAGATCTTATCTTCCTGTATTAGCAGCGAAGTAGATCGAAGATAGCA
130 ACAGATATTATCTTCCTGTATTAGCAACGAAGTAGATCGAAGATAGCA
* * **
24985462 AGCCTTATCTCCTTGAGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
* ** * * *
24985527 CAGCGAAGTAGATCAAAGATAGCAAGCCTTATCTCCCTGAACAGCAGTGGAGTAGGTTGAAAATA
66 CAGCGAAGTAGATCGAAGA-CCCCAGCCTTATCTCTCTGAGCAGCAGTGGAGTAGGTTGAAAATA
* * * *
24985592 GCAGATCTTGA-CTTCCTATATTAGCAGCGAAGTAGATCGAAGATAGCA
130 ACAGATATT-ATCTTCCTGTATTAGCAACGAAGTAGATCGAAGATAGCA
24985640 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
* * *
24985705 CAGCGAAGTAGATCGAAGACCCCGGCCTTATCTCTCTGGGCAGTAGTGGAGTAGGTTGAAAATAA
66 CAGCGAAGTAGATCGAAGACCCCAGCCTTATCTCTCTGAGCAGCAGTGGAGTAGGTTGAAAATAA
* * *
24985770 CAGATATTATCTTCCTGTATTAGCAATGAAGTAGATCGAGGATAGGA
131 CAGATATTATCTTCCTGTATTAGCAACGAAGTAGATCGAAGATAGCA
* *
24985817 AGCTTTTTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
* *
24985882 CAGCGAAGTAGATCGAAGACCCCGGCCTTATCTCTCTGGGCAGCAGTGGAGTAGGTTGAAAATAA
66 CAGCGAAGTAGATCGAAGACCCCAGCCTTATCTCTCTGAGCAGCAGTGGAGTAGGTTGAAAATAA
* * *
24985947 CAGATATTATCTTCCTGTATTAGCAATGAAGTAGATCGAGGATAGGA
131 CAGATATTATCTTCCTGTATTAGCAACGAAGTAGATCGAAGATAGCA
* *
24985994 AGCTTTTTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
* * ** * ** * * ** **
24986059 CAGCGAA-TCAGATTGAAGACACCAGCCTTGCCTCCCTGAGTTTGCAGTGGTGCAGACTGAAAGC
66 CAGCGAAGT-AGATCGAAGACCCCAGCCTTATCTCTCTGAG-CAGCAGTGGAGTAGGTTGAAAAT
*** * ** * * * * * *
24986123 AGTTGATCTTGCCTTCCTGTATTGGCAACGAAGCAGATTGGAGACA-CC
129 AACAGATATTATCTTCCTGTATTAGCAACGAAGTAGATCGAAGATAGCA
** ** * * ** * *
24986171 AGCCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTGAAAACAGTAGATCTTGCCTTCCTGTATTG
1 AGCCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTG
** *
24986236 GCAGCGAAACAGATCGAAGAACACCAGCCTT
65 GCAGCGAAGTAGATCGAAG-ACCCCAGCCTT
24986267 GCCTCGCTGA
Statistics
Matches: 719, Mismatches: 77, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
176 2 0.00
177 440 0.61
178 265 0.37
179 12 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (177 bp):
AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGG
CAGCGAAGTAGATCGAAGACCCCAGCCTTATCTCTCTGAGCAGCAGTGGAGTAGGTTGAAAATAA
CAGATATTATCTTCCTGTATTAGCAACGAAGTAGATCGAAGATAGCA
Found at i:24986108 original size:266 final size:266
Alignment explanation
Indices: 24985271--24986176 Score: 1122
Period size: 266 Copynumber: 3.4 Consensus size: 266
24985261 CCCAGAGAGC
* * * *
24985271 AGATCGAAGAC-CCCAGCCTTATCTCCCTGAGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTT
1 AGATCGAAGACAGCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTT
24985335 GTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGCCTTATCTCAT-TGAGCAGCAGTGG
66 GTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGCCTTATCTC-TCTGAGCAGCAGTGG
*
24985399 AGTAGGTTGAAAATAACAGATCTTATCTTCCTGTATTAGCAGCGAAGTAGATCGAAGATAGCAAG
130 AGTAGGTTGAAAATAACAGATCTTATCTTCCTGTATTAGCAGCGAAGTAGATCGAAGATAGGAAG
*
24985464 CCTTATCTCCTTGAGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGGCA
195 CCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGGCA
24985529 GCGAAGT
260 GCGAAGT
* * *
24985536 AGATCAAAGATAGCAAGCCTTATCTCCCTGAACAGCAGTGGAGTAGGTTGAAAATAGCAGATCTT
1 AGATCGAAGACAGCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTT
* * * ** * *
24985601 GACTTCCTATATTAGCAGCGAAGTAGATCGAAGATAGCAAGCCTTATCTCCCTGAGCAGCAGTGG
66 GTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA-CCCCAGCCTTATCTCTCTGAGCAGCAGTGG
** * * ***
24985666 AGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCG--
130 AGTAGGTTGAAAATAACAGATCTTATCTTCCTGTATTAGCAGCGAAGTAGATCGAAGA-TAGGAA
* * * * *
24985729 GCCTTATCTCTCTGGGCAGTAGTGGAGTAGGTTGAAAATAACAGATATTATCTTCCTGTATTAGC
194 GCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGGC
**
24985794 AATGAAGT
259 AGCGAAGT
* * * * * *
24985802 AGATCGAGGATAGGAAGCTTTTTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTT
1 AGATCGAAGACAGCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTT
* *
24985867 GTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCGGCCTTATCTCTCTGGGCAGCAGTGGA
66 GTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGCCTTATCTCTCTGAGCAGCAGTGGA
* ** *
24985932 GTAGGTTGAAAATAACAGATATTATCTTCCTGTATTAGCAATGAAGTAGATCGAGGATAGGAAGC
131 GTAGGTTGAAAATAACAGATCTTATCTTCCTGTATTAGCAGCGAAGTAGATCGAAGATAGGAAGC
* * * **
24985997 TTTTTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCCTGTATTGGCAG
196 CTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAG
24986062 CGAA-T
261 CGAAGT
* * ** ** * * ** ** **
24986067 CAGATTGAAGACA-CCAGCCTTGCCTCCCTGAGTTTGCAGTGGTGCAGACTGAAAGCAGTTGATC
1 -AGATCGAAGACAGCAAGCCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATAGCAGATC
* * * * * *
24986131 TTGCCTTCCTGTATTGGCAACGAAGCAGATTGGAGACACCAGCCTT
64 TTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGCCTT
24986177 GCCTCCCTGA
Statistics
Matches: 540, Mismatches: 93, Indels: 15
0.83 0.14 0.02
Matches are distributed among these distances:
264 1 0.00
265 98 0.18
266 362 0.67
267 79 0.15
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (266 bp):
AGATCGAAGACAGCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTT
GTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAGCCTTATCTCTCTGAGCAGCAGTGGA
GTAGGTTGAAAATAACAGATCTTATCTTCCTGTATTAGCAGCGAAGTAGATCGAAGATAGGAAGC
CTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAG
CGAAGT
Found at i:24986159 original size:45 final size:45
Alignment explanation
Indices: 24986034--24986248 Score: 145
Period size: 44 Copynumber: 4.8 Consensus size: 45
24986024 GGTTGAAAAT
* * *
24986034 AGTAGATCTTGTCTTCCTGTATTGGCAGCGAATCAGATTG-AAGAC
1 AGTAGATCTTGCCTTCCTGTATTGGCAGCGAAGCAGACTGAAAG-C
** * * * * **
24986079 ACCAG-CCTTGCCTCCCTG-AGTTTGCAGTGGTGCAGACTGAAAGC
1 AGTAGATCTTGCCTTCCTGTA-TTGGCAGCGAAGCAGACTGAAAGC
* * * *
24986123 AGTTGATCTTGCCTTCCTGTATTGGCAACGAAGCAGATTG-GAGAC
1 AGTAGATCTTGCCTTCCTGTATTGGCAGCGAAGCAGACTGAAAG-C
** * * * * *
24986168 ACCAG-CCTTGCCTCCCTG-AGTTTGCAGCGGAGCAGACTGAAAAC
1 AGTAGATCTTGCCTTCCTGTA-TTGGCAGCGAAGCAGACTGAAAGC
*
24986212 AGTAGATCTTGCCTTCCTGTATTGGCAGCGAAACAGA
1 AGTAGATCTTGCCTTCCTGTATTGGCAGCGAAGCAGA
24986249 TCGAAGAACA
Statistics
Matches: 120, Mismatches: 41, Indels: 18
0.67 0.23 0.10
Matches are distributed among these distances:
43 2 0.02
44 58 0.48
45 58 0.48
46 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (45 bp):
AGTAGATCTTGCCTTCCTGTATTGGCAGCGAAGCAGACTGAAAGC
Found at i:24986202 original size:44 final size:44
Alignment explanation
Indices: 24986058--24986280 Score: 155
Period size: 45 Copynumber: 5.0 Consensus size: 44
24986048 TCCTGTATTG
*
24986058 GCAGCGAATCAGATTGAAGACACCAGCCTTGCCTCCCTGAGTTT
1 GCAGCGAAGCAGATTGAAGACACCAGCCTTGCCTCCCTGAGTTT
* ** * *** * * *
24986102 GCAGTGGTGCAGACTGAA-AGCAGTTGATCTTGCCTTCCTGTA-TTG
1 GCAGCGAAGCAGATTGAAGA-CACCAG-CCTTGCCTCCCTG-AGTTT
* *
24986147 GCAACGAAGCAGATTGGAGACACCAGCCTTGCCTCCCTGAGTTT
1 GCAGCGAAGCAGATTGAAGACACCAGCCTTGCCTCCCTGAGTTT
* * * ** * * *
24986191 GCAGCGGAGCAGACTGAAAACAGTAGATCTTGCCTTCCTGTA-TTG
1 GCAGCGAAGCAGATTGAAGACACCAG-CCTTGCCTCCCTG-AGTTT
* * *
24986236 GCAGCGAAACAGATCGAAGAACACCAGCCTTGCCTCGCTGAGTTT
1 GCAGCGAAGCAGATTGAAG-ACACCAGCCTTGCCTCCCTGAGTTT
24986281 ACAGTGGAGT
Statistics
Matches: 126, Mismatches: 44, Indels: 17
0.67 0.24 0.09
Matches are distributed among these distances:
43 2 0.02
44 49 0.39
45 67 0.53
46 8 0.06
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (44 bp):
GCAGCGAAGCAGATTGAAGACACCAGCCTTGCCTCCCTGAGTTT
Found at i:24986333 original size:179 final size:178
Alignment explanation
Indices: 24986027--24986363 Score: 487
Period size: 179 Copynumber: 1.9 Consensus size: 178
24986017 TGGAGTAGGT
* * * *
24986027 TGAAAATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAATCAGATTGAAGACACCAGCCTTGCCT
1 TGAAAACAGTAGATCTTGCCTTCCTGTATTGGCAGCGAAACAGATCGAAGACACCAGCCTTGCCT
* * * * ** *
24986092 CCCTGAGTTTGCAGTGGTGCAGACTGAAAGCAGTTGATCTTGCCTTCCTGTATTGGCAACGAAGC
66 CCCTGAGTTTACAGTGGAGCAGACTAAAAACAGCAGATCTTGCCTTCCTGTACTGGCAACGAAGC
24986157 AGATTGGA-GACACCAGCCTTGCCTCCCTGAGTTTGCAGCGGAGCAGAC
131 AGATT-GACGACACCAGCCTTGCCTCCCTGAGTTTGCAGCGGAGCAGAC
24986205 TGAAAACAGTAGATCTTGCCTTCCTGTATTGGCAGCGAAACAGATCGAAGAACACCAGCCTTGCC
1 TGAAAACAGTAGATCTTGCCTTCCTGTATTGGCAGCGAAACAGATCGAAG-ACACCAGCCTTGCC
* * * *
24986270 TCGCTGAGTTTACAGTGGAGTAGACTAAAAACAGCAGATCTTGTCTTTCTGTACTGGCAACGAAG
65 TCCCTGAGTTTACAGTGGAGCAGACTAAAAACAGCAGATCTTGCCTTCCTGTACTGGCAACGAAG
* * *
24986335 CAGATTGACTACACTAGCCTTGTCTCCCT
130 CAGATTGACGACACCAGCCTTGCCTCCCT
24986364 AAGCAGTAGT
Statistics
Matches: 139, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
178 48 0.35
179 91 0.65
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (178 bp):
TGAAAACAGTAGATCTTGCCTTCCTGTATTGGCAGCGAAACAGATCGAAGACACCAGCCTTGCCT
CCCTGAGTTTACAGTGGAGCAGACTAAAAACAGCAGATCTTGCCTTCCTGTACTGGCAACGAAGC
AGATTGACGACACCAGCCTTGCCTCCCTGAGTTTGCAGCGGAGCAGAC
Found at i:24988397 original size:4 final size:4
Alignment explanation
Indices: 24988388--24988414 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
24988378 TATTTTCATT
24988388 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
24988415 ATCTATTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:24988480 original size:28 final size:27
Alignment explanation
Indices: 24988437--24988534 Score: 92
Period size: 29 Copynumber: 3.5 Consensus size: 27
24988427 TTTTGTATAG
*
24988437 ATATTTT-ATTTCTTTCAAATATTTTA
1 ATATTTTAATTTATTTCAAATATTTTA
* * *
24988463 ACATCTTTAATTTATTTCAACTTATTTCA
1 ATAT-TTTAATTTATTTCAA-ATATTTTA
*
24988492 ATATTGTTAATTTATCT-AAATTTATTTTA
1 ATATT-TTAATTTATTTCAAA--TATTTTA
24988521 ATATTTTAATTTAT
1 ATATTTTAATTTAT
24988535 ATATTATATT
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
26 3 0.05
27 3 0.05
28 22 0.38
29 30 0.52
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.58
Consensus pattern (27 bp):
ATATTTTAATTTATTTCAAATATTTTA
Found at i:24990023 original size:20 final size:20
Alignment explanation
Indices: 24989969--24990023 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
24989959 AACTTTTGGG
* *
24989969 ACTTCTACCCATATAGGTCC
1 ACTTCTACCCATACAAGTCC
* *
24989989 ACTTTTATCCATACAAGTCC
1 ACTTCTACCCATACAAGTCC
*
24990009 ACTTCTACCCGTACA
1 ACTTCTACCCATACA
24990024 TCTTGTGAGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.27, C:0.35, G:0.07, T:0.31
Consensus pattern (20 bp):
ACTTCTACCCATACAAGTCC
Found at i:24992437 original size:47 final size:47
Alignment explanation
Indices: 24992308--24992941 Score: 1052
Period size: 47 Copynumber: 13.4 Consensus size: 47
24992298 CAGCCAAGAC
24992308 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
24992355 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
24992404 AGTGTATATGTGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
24992451 AGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
24992498 AGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
24992545 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
24992592 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
**
24992639 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGTTTGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
24992688 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
24992735 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
24992782 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
24992829 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
24992876 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
24992923 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
24992942 TCCCGAAGGG
Statistics
Matches: 555, Mismatches: 28, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 463 0.83
49 92 0.17
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:24992818 original size:284 final size:284
Alignment explanation
Indices: 24992308--24992941 Score: 1128
Period size: 284 Copynumber: 2.2 Consensus size: 284
24992298 CAGCCAAGAC
24992308 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
*
24992373 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGTCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
*
24992438 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGT
131 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
*
24992503 ATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
196 ATATATGTAATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
24992568 AATGGCCGATGTGATGAATGTGAA
261 AATGGCCGATGTGATGAATGTGAA
24992592 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
**
24992657 AAGGCCTAATGGCCGATGTGATGTTTGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
24992722 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
131 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
*
24992787 ATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
196 ATATATGTAATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
24992852 AATGGCCGATGTGATGAATGTGAA
261 AATGGCCGATGTGATGAATGTGAA
* * * * * * * *
24992876 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATA-A-ATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
24992939 AAG
66 AAG
24992942 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
282 10 0.03
283 1 0.00
284 325 0.97
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (284 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
ATATATGTAATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAA
Found at i:24993116 original size:37 final size:37
Alignment explanation
Indices: 24993060--24993138 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24993050 CCGAGCTCTA
* *
24993060 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
24993097 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24993134 AAGAC
1 AAGAC
24993139 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24998669 original size:17 final size:16
Alignment explanation
Indices: 24998640--24998686 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
24998630 CACTTTTTCA
24998640 ATCATCC-CTCATCTC
1 ATCATCCTCTCATCTC
24998655 ATCATCCCTCTCATCTC
1 ATCAT-CCTCTCATCTC
24998672 -TCATCCTCTC-TCTC
1 ATCATCCTCTCATCTC
24998686 A
1 A
24998687 ACTCTCTTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.14
15 11 0.38
16 6 0.21
17 8 0.28
ACGTcount: A:0.17, C:0.47, G:0.00, T:0.36
Consensus pattern (16 bp):
ATCATCCTCTCATCTC
Found at i:24998675 original size:19 final size:19
Alignment explanation
Indices: 24998651--24998692 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
24998641 TCATCCCTCA
*
24998651 TCTCATCATCCCTCTCATC
1 TCTCATCATCCCTCTCAAC
* *
24998670 TCTCATCCTCTCTCTCAAC
1 TCTCATCATCCCTCTCAAC
24998689 TCTC
1 TCTC
24998693 TTAGATTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.14, C:0.48, G:0.00, T:0.38
Consensus pattern (19 bp):
TCTCATCATCCCTCTCAAC
Found at i:25007813 original size:49 final size:50
Alignment explanation
Indices: 25007685--25007881 Score: 195
Period size: 56 Copynumber: 3.8 Consensus size: 50
25007675 ATTTGGGTGA
* * *
25007685 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGATGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGA-G--ATG
25007741 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * *
25007791 AGAGGTCCC-CGTAAGACTATGTCTAGGG-CATGGTACG--GGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCT-GGGACATGG--CGTTGGCACCGAGATG
** * *
25007840 AGAACTCCCATGTAAGACCATATCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
25007882 TGTTATTATT
Statistics
Matches: 122, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
48 1 0.01
49 39 0.32
50 36 0.30
51 2 0.02
52 1 0.01
53 2 0.02
55 1 0.01
56 40 0.33
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:25012342 original size:49 final size:50
Alignment explanation
Indices: 25012270--25012404 Score: 168
Period size: 49 Copynumber: 2.7 Consensus size: 50
25012260 CCGATTGTAG
* *
25012270 CTCGTGCGAGCTTACCGATTCTCAGCTCGTATGAGCTTATCAATTGCA-T-
1 CTCGTGAGAGCTTACCGATTCTCAGCTCGTATGAGCTTACCAATT-CACTA
* * *
25012319 CTCGTGAGAGCTTATCGATTCTCAGCTTGTATGAGCTTACCAATTTACTA
1 CTCGTGAGAGCTTACCGATTCTCAGCTCGTATGAGCTTACCAATTCACTA
* *
25012369 CTCGTGAGAGCATACCGATTCAT-AGCTCGTGTGAGC
1 CTCGTGAGAGCTTACCGATTC-TCAGCTCGTATGAGC
25012405 ATACATGTAA
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 42 0.57
50 30 0.41
51 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.32
Consensus pattern (50 bp):
CTCGTGAGAGCTTACCGATTCTCAGCTCGTATGAGCTTACCAATTCACTA
Found at i:25012408 original size:25 final size:25
Alignment explanation
Indices: 25012257--25012404 Score: 101
Period size: 25 Copynumber: 6.0 Consensus size: 25
25012247 TCATTAGGGA
* *
25012257 TTACCGATT-GTAGCTCGTGCGAGC
1 TTACCGATTCATAGCTCGTGTGAGC
*
25012281 TTACCGATTC-TCAGCTCGTATGAGC
1 TTACCGATTCAT-AGCTCGTGTGAGC
* * *
25012306 TTATCAATTGCAT--CTCGTGAGAGC
1 TTACCGATT-CATAGCTCGTGTGAGC
* * *
25012330 TTATCGATTC-TCAGCTTGTATGAGC
1 TTACCGATTCAT-AGCTCGTGTGAGC
* * *
25012355 TTACCAATTTACTA-CTCGTGAGAGC
1 TTACCGATTCA-TAGCTCGTGTGAGC
*
25012380 ATACCGATTCATAGCTCGTGTGAGC
1 TTACCGATTCATAGCTCGTGTGAGC
25012405 ATACATGTAA
Statistics
Matches: 94, Mismatches: 20, Indels: 19
0.71 0.15 0.14
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 29 0.31
25 59 0.63
26 2 0.02
27 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (25 bp):
TTACCGATTCATAGCTCGTGTGAGC
Found at i:25014956 original size:20 final size:20
Alignment explanation
Indices: 25014931--25014969 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
25014921 TTAGAAACTA
*
25014931 AATTGAGCTCGAATGAGCTG
1 AATTGAGCTCAAATGAGCTG
25014951 AATTGAGCTCAAATGAGCT
1 AATTGAGCTCAAATGAGCT
25014970 TGTTGGAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (20 bp):
AATTGAGCTCAAATGAGCTG
Found at i:25014998 original size:19 final size:20
Alignment explanation
Indices: 25014974--25015012 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
25014964 TGAGCTTGTT
25014974 GGAGCTGAAA-CGAGCTAAA
1 GGAGCTGAAATCGAGCTAAA
25014993 GGAGCTGAAATCGAGCTAAA
1 GGAGCTGAAATCGAGCTAAA
25015013 ATCAGCTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.41, C:0.15, G:0.31, T:0.13
Consensus pattern (20 bp):
GGAGCTGAAATCGAGCTAAA
Found at i:25017480 original size:20 final size:21
Alignment explanation
Indices: 25017455--25017494 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
25017445 AAGAAACAAA
*
25017455 ATATTC-AATTCTTTTTTTTT
1 ATATTCGAACTCTTTTTTTTT
25017475 ATATTCGAACTCTTTTTTTT
1 ATATTCGAACTCTTTTTTTT
25017495 ACTTCGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.20, C:0.12, G:0.03, T:0.65
Consensus pattern (21 bp):
ATATTCGAACTCTTTTTTTTT
Found at i:25019036 original size:50 final size:52
Alignment explanation
Indices: 25018958--25019061 Score: 131
Period size: 50 Copynumber: 2.0 Consensus size: 52
25018948 TAGTGATCTT
* * * *
25018958 GGCATGTTTCTGGGGAGGATGTAAAGCCTACAGGCTTGGCACTTGGTTCCCA
1 GGCATGTTTCTGGAGAGGATGTAAAGCCTACAGGCTAGGAACTTGGTGCCCA
* * *
25019010 GGCATGTTTTTGGAG-GGATGT-TAGCCTACGGGCTAGGAACTTGGTGCCCA
1 GGCATGTTTCTGGAGAGGATGTAAAGCCTACAGGCTAGGAACTTGGTGCCCA
25019060 GG
1 GG
25019062 AGTGTTCTTG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
50 26 0.58
51 6 0.13
52 13 0.29
ACGTcount: A:0.18, C:0.19, G:0.36, T:0.27
Consensus pattern (52 bp):
GGCATGTTTCTGGAGAGGATGTAAAGCCTACAGGCTAGGAACTTGGTGCCCA
Found at i:25022006 original size:23 final size:23
Alignment explanation
Indices: 25021980--25022037 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
25021970 GGCGTTACAG
*
25021980 AATACGCCACAAAGGCATCACAC
1 AATATGCCACAAAGGCATCACAC
* * *
25022003 AATATGCTACATAGGCATCACAG
1 AATATGCCACAAAGGCATCACAC
25022026 AATATGCCACAA
1 AATATGCCACAA
25022038 GGCTACACTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.43, C:0.28, G:0.14, T:0.16
Consensus pattern (23 bp):
AATATGCCACAAAGGCATCACAC
Found at i:25025723 original size:43 final size:43
Alignment explanation
Indices: 25025660--25025755 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
25025650 GTGAAGAAAG
* * * *
25025660 AGGTGCTCGATGGTGGTCGAGGCTCCCACACATCTGAGGCACCA
1 AGGTGC-CGATGCTGCTCGAGGCTCCCACACATCCGAGCCACCA
* ** *
25025704 AGGTGCCGATGCTGCTCGAGGCTTCGGCACATCCGAGCCATCA
1 AGGTGCCGATGCTGCTCGAGGCTCCCACACATCCGAGCCACCA
25025747 AGGTGCCGA
1 AGGTGCCGA
25025756 CAGTGGGGAG
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 38 0.86
44 6 0.14
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (43 bp):
AGGTGCCGATGCTGCTCGAGGCTCCCACACATCCGAGCCACCA
Found at i:25028868 original size:43 final size:43
Alignment explanation
Indices: 25028798--25028969 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 43
25028788 TTTTCTTTAG
* * * *
25028798 CCCGCACATCCCAGGCACTAAGGTGCCGATGGTGCTCGAGGGT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCTCGAGGCT
25028841 CCCGCACATCCAAG-CACCAAGGTTGCCGATGGTG-TCTGAGGCT
1 CCCGCACATCCAAGCCACCAAGG-TGCCGATGGTGCTC-GAGGCT
* * * * * * *
25028884 CCCGTACATTCGAGCCACCATGGTGCCCATGCTACTCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCTCGAGGCT
* * * * *
25028927 CCCACACATCCGAGCCACAAAGGTGTCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCTCGAGGCT
25028970 TTTGCACGAC
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
42 9 0.09
43 87 0.83
44 9 0.09
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.17
Consensus pattern (43 bp):
CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCTCGAGGCT
Found at i:25029070 original size:85 final size:85
Alignment explanation
Indices: 25028920--25029415 Score: 424
Period size: 85 Copynumber: 5.8 Consensus size: 85
25028910 CCATGCTACT
* * * *** *
25028920 CGAGGCTCCCACACATCCGAGCCACAAAGGTGTCGATGGTGCCCGAGGCTTTTGCACGACGAAGG
1 CGAGGCTCCCGCACATCCGAG-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
25028985 GCCTA-TTATGCTGATGGTGCC
65 GCCTAGTT-TGCTGATGGTGTC
* * * * *
25029006 CAAGGCTCCCGCACATCCGAGCACCGAGGTGACGATGGTGCCTGAGGCTCCCGCGCGACCAAGGG
1 CGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
25029071 CTTAGTTTGCCGATGGTGTC
66 CCTAGTTTGCTGATGGTGTC
* ** * ** ** * *
25029091 TGACCCTCCCGCACATCCGAGCCCCTTGGTGCCGACAGTGCCCGAGGCTCTCACACGACCAAGGG
1 CGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
25029156 CCTAGGTTG-TCGATGGTGTC
66 CCTAGTTTGCT-GATGGTGTC
* * * * * *
25029176 CGAGGTTCCCGTACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGAG-TCCTGCACGACCAAGG
1 CGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAG-GCTCCCGCACGACCAAGG
** ***
25029240 GCCTAGGATGCTGACATTGTC
65 GCCTAGTTTGCTGATGGTGTC
* ** * * * ** *
25029261 CGAGGCTCCCACACATCATAGCACCGAGGGGCCGATGTTGCCCGAGG-TGCCCATACGAGCAAGG
1 CGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCT-CCCGCACGACCAAGG
* *
25029325 GCTTAGTTTGCCGATGGTGTC
65 GCCTAGTTTGCTGATGGTGTC
* * * ** * *
25029346 CGACGCTCCCGCACATCCGAGCGCCCAGGTGCCGATGGTGCCCGAAACTCTCGCAAGACCAAGGG
1 CGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
25029411 CCTAG
66 CCTAG
25029416 GCTACCGATG
Statistics
Matches: 316, Mismatches: 88, Indels: 13
0.76 0.21 0.03
Matches are distributed among these distances:
84 2 0.01
85 290 0.92
86 24 0.08
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (85 bp):
CGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGTTTGCTGATGGTGTC
Found at i:25029286 original size:255 final size:256
Alignment explanation
Indices: 25028932--25029416 Score: 618
Period size: 255 Copynumber: 1.9 Consensus size: 256
25028922 AGGCTCCCAC
* ** * **
25028932 ACATCCGAGCCACAAAGGTGTCGATGGTGCCCGAGGCTTTTGCACGACGAAGGGCCTATTATGCT
1 ACATCCAAGCCACAAAGGTGTCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGATGCT
** * * * * * *
25028997 GATGGTGCCCAAGGCTCCCGCACATCCGAGCACCGAGGTGACGATGGTGCCTGAGGCT-CCCGCG
66 GACAGTGCCCAAGGCTCCCACACATCAGAGCACCGAGGGGACGATGGTGCCCGAGG-TGCCCACA
* *
25029061 CGACCAAGGGCTTAGTTTGCCGATGGTGTCTGACCCTCCCGCACATCCGAGC-CCCTTGGTGCCG
130 CGACCAAGGGCTTAGTTTGCCGATGGTGTCCGACCCTCCCGCACATCCGAGCGCCC-AGGTGCCG
** *
25029125 ACAGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTTGTCGATGGTGTCCGAGGTTCCCGT
194 ACAGTGCCCGAAACTCTCACAAGACCAAGGGCCTAGGTTGTCGATGGTGTCCGAGGTTCCCGT
* *
25029188 ACATCCAAG-CACCAAGGTGTCGATGGTGCTCGAGAG-TCCTGCACGACCAAGGGCCTAGGATGC
1 ACATCCAAGCCACAAAGGTGTCGATGGTGCCCGAG-GCTCCTGCACGACCAAGGGCCTAGGATGC
* * * * * * *
25029251 TGACATTGTCCGAGGCTCCCACACATCATAGCACCGAGGGGCCGATGTTGCCCGAGGTGCCCATA
65 TGACAGTGCCCAAGGCTCCCACACATCAGAGCACCGAGGGGACGATGGTGCCCGAGGTGCCCACA
* *
25029316 CGAGCAAGGGCTTAGTTTGCCGATGGTGTCCGACGCTCCCGCACATCCGAGCGCCCAGGTGCCGA
130 CGACCAAGGGCTTAGTTTGCCGATGGTGTCCGACCCTCCCGCACATCCGAGCGCCCAGGTGCCGA
** *
25029381 TGGTGCCCGAAACTCTCGCAAGACCAAGGGCCTAGG
195 CAGTGCCCGAAACTCTCACAAGACCAAGGGCCTAGG
25029417 CTACCGATGA
Statistics
Matches: 193, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
254 1 0.01
255 180 0.93
256 12 0.06
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.18
Consensus pattern (256 bp):
ACATCCAAGCCACAAAGGTGTCGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGATGCT
GACAGTGCCCAAGGCTCCCACACATCAGAGCACCGAGGGGACGATGGTGCCCGAGGTGCCCACAC
GACCAAGGGCTTAGTTTGCCGATGGTGTCCGACCCTCCCGCACATCCGAGCGCCCAGGTGCCGAC
AGTGCCCGAAACTCTCACAAGACCAAGGGCCTAGGTTGTCGATGGTGTCCGAGGTTCCCGT
Found at i:25029469 original size:298 final size:298
Alignment explanation
Indices: 25029151--25029739 Score: 708
Period size: 298 Copynumber: 2.0 Consensus size: 298
25029141 TCACACGACC
* * *
25029151 AAGGGCCTAGGTTGTCGATGGTGTCCGAGGTTCCCGTACATCCAAGCACCAAGGTGTCGATGGT-
1 AAGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTCTCGATGGTG
* *
25029215 GCTCGAGAG-TC-CTGCACGACCAAGGGCCTAGGATGCTGAC-ATTGT-CC-GAGGCTCCCACAC
66 GC-CGAG-GCTCTC-GCACGACAAAGGGCCT---ATGCTGACGATGGTGCCTGAGGCTCCCACAC
* * * **
25029275 AT-CATAGCACCGAGGGGCCGATGTTGCCCGAGG-TGCCCATACGAGCAAGGGCTTAGTTTGCCG
125 ATCCA-AGCACCGAGCGGCCGATGGTGCCCGAGGCT-CCCATACGACCAAGGGCCCAGTTTGCCG
* ** *
25029338 ATGGTGTCCGACGCTCCCGCACATCCGAGCGCCCAGGTGCCGATGGTGCCCGAAACTCTCGCAAG
188 ATGGTATAAGACGCGCCCGCACATCCGAGCGCCCAGGTGCCGATGGTGCCCGAAACTCTCGCAAG
25029403 ACCAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCCCGAAGGAAT
253 ACCAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCCCGAAGGAAT
* * * *
25029449 AAGGGCCTAGTTTTTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGTCTTGATGGTG
1 AAGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTCTCGATGGTG
* * **
25029514 GCCGAGGCTCTCGCACGACAAAGGGCCTATTCTGCCGATGGTGCCTGAGGCTCCCGGACATCCAA
66 GCCGAGGCTCTCGCACGACAAAGGGCCTATGCTGACGATGGTGCCTGAGGCTCCCACACATCCAA
* * * * *
25029579 GCACCGAGCTGCTGATGGTGCCCGAGGCTCCCTTACGACCAAGGGCCCAGTTTTCCGATGTTATA
131 GCACCGAGCGGCCGATGGTGCCCGAGGCTCCCATACGACCAAGGGCCCAGTTTGCCGATGGTATA
* * *** *
25029644 AGAGGCGCCCGCACATCCGAGCGCCTAGGTGCCGATGGTGCCCGTGGCTCTCGCACGACCAAGGG
196 AGACGCGCCCGCACATCCGAGCGCCCAGGTGCCGATGGTGCCCGAAACTCTCGCAAGACCAAGGG
* * * * *
25029709 CCTAGGTTGCCGATGGTGTCCGAGGTTCCCG
261 CCTAGGCTACCGATGATGCCCGAGGCTCCCG
25029740 CACATCCAAG
Statistics
Matches: 245, Mismatches: 38, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
295 6 0.02
296 4 0.02
297 3 0.01
298 226 0.92
299 6 0.02
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (298 bp):
AAGGGCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTCTCGATGGTG
GCCGAGGCTCTCGCACGACAAAGGGCCTATGCTGACGATGGTGCCTGAGGCTCCCACACATCCAA
GCACCGAGCGGCCGATGGTGCCCGAGGCTCCCATACGACCAAGGGCCCAGTTTGCCGATGGTATA
AGACGCGCCCGCACATCCGAGCGCCCAGGTGCCGATGGTGCCCGAAACTCTCGCAAGACCAAGGG
CCTAGGCTACCGATGATGCCCGAGGCTCCCGAAGGAAT
Found at i:25029521 original size:255 final size:254
Alignment explanation
Indices: 25028992--25029523 Score: 540
Period size: 255 Copynumber: 2.1 Consensus size: 254
25028982 AGGGCCTATT
* * * * *
25028992 ATGCTGATGGTGCCCAAGGCTCCCGCACATCCGAGCACCGAGGTGACGATGGTGCCTGAGGCTCC
1 ATGCTGATGGTGCCCGAGGCTCCCACACATCAGAGCACCGAGGGGACGATGGTGCCCGAGGCTCC
* * * *
25029057 CGCGCGACCAAGGGCTTAGTTTGCCGATGGTGTCTGACCCTCCCGCACATCCGAGCCCCTTGGTG
66 CACACGACCAAGGGCTTAGTTTGCCGATGGTGTCCGACCCTCCCGCACATCCGAGCCCCTAGGTG
** * * ** * * *
25029122 CCGACAGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTTGTCGATGGTGTCCGAGGTTCCCG
131 CCGACAGTGCCCGAAACTCTCACAAGACCAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCCCG
* * * **
25029187 TACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGAGTCCTGCACGACCAAGGGCCTAGG
196 AAAAT-CAAGCACCAAGGTGTCGATGGTGCTCGAGAGTCCCGCACGACCAAGCACCTAGG
*** * * * *
25029247 ATGCTGACATTGTCCGAGGCTCCCACACATCATAGCACCGAGGGGCCGATGTTGCCCGAGG-TGC
1 ATGCTGATGGTGCCCGAGGCTCCCACACATCAGAGCACCGAGGGGACGATGGTGCCCGAGGCT-C
* * *
25029311 CCATACGAGCAAGGGCTTAGTTTGCCGATGGTGTCCGACGCTCCCGCACATCCGAGCGCCC-AGG
65 CCACACGACCAAGGGCTTAGTTTGCCGATGGTGTCCGACCCTCCCGCACATCCGAGC-CCCTAGG
** *
25029375 TGCCGATGGTGCCCGAAACTCTCGCAAGACCAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCC
129 TGCCGACAGTGCCCGAAACTCTCACAAGACCAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCC
** * * *
25029440 CGAAGGAAT-AAGGGCCTAGTTTTTCGATGGTG-TCCGAG-GCTCCCGCAC-ATCCAAGCACCTA
194 CGAA--AATCAAGCACCAAG-GTGTCGATGGTGCT-CGAGAG-TCCCGCACGA-CCAAGCACCTA
25029501 GG
253 GG
*
25029503 -T-CTTGATGGTGGCCGAGGCTC
1 ATGC-TGATGGTGCCCGAGGCTC
25029524 TCGCACGACA
Statistics
Matches: 223, Mismatches: 45, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
254 2 0.01
255 184 0.83
256 35 0.16
257 2 0.01
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (254 bp):
ATGCTGATGGTGCCCGAGGCTCCCACACATCAGAGCACCGAGGGGACGATGGTGCCCGAGGCTCC
CACACGACCAAGGGCTTAGTTTGCCGATGGTGTCCGACCCTCCCGCACATCCGAGCCCCTAGGTG
CCGACAGTGCCCGAAACTCTCACAAGACCAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCCCG
AAAATCAAGCACCAAGGTGTCGATGGTGCTCGAGAGTCCCGCACGACCAAGCACCTAGG
Found at i:25029525 original size:128 final size:128
Alignment explanation
Indices: 25029321--25029569 Score: 320
Period size: 128 Copynumber: 1.9 Consensus size: 128
25029311 CCATACGAGC
* * *
25029321 AAGGGCTTAGTTTGCCGATGGTGTCCGACGCTCCCGCACATCCGAGCGCCCAGGTGCCGATGGTG
1 AAGGGCCTAGTTTGCCGATGGTGTCCGACGCTCCCGCACATCCAAGCACCCAGGTGCCGATGGTG
*
25029386 CCCGAAACTCTCGCAAGACCAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCCCGAAGGAAT
66 CCCGAAACTCTCGCAAGACAAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCCCGAAGGAAT
** * * *
25029449 AAGGGCCTAGTTTTTCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGT-CTTGATGGT
1 AAGGGCCTAGTTTGCCGATGGTGTCCGACGCTCCCGCACATCCAAGCACCCAGGTGC-CGATGGT
* ** * ** * * *
25029513 GGCCGAGGCTCTCGCACGACAAAGGGCCTATTCTGCCGATGGTGCCTGAGGCTCCCG
65 GCCCGAAACTCTCGCAAGACAAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCCCG
25029570 GACATCCAAG
Statistics
Matches: 102, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
127 1 0.01
128 101 0.99
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (128 bp):
AAGGGCCTAGTTTGCCGATGGTGTCCGACGCTCCCGCACATCCAAGCACCCAGGTGCCGATGGTG
CCCGAAACTCTCGCAAGACAAAGGGCCTAGGCTACCGATGATGCCCGAGGCTCCCGAAGGAAT
Found at i:25029553 original size:85 final size:85
Alignment explanation
Indices: 25029411--25030222 Score: 779
Period size: 85 Copynumber: 9.5 Consensus size: 85
25029401 AGACCAAGGG
* * * * * ** **
25029411 CCTAGGCTACCGATGATGCCCGAGGCTCCCGAAGGAATAAGGGCCTAGTTTTTCGATGGTGTCCG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCG
25029476 AGGCTCCCGCACATCCAAGCA
65 AGGCTCCCGCACATCCAAGCA
* * *
25029497 CCTAGGT-CTTGATGGTGGCCGAGGCTCTCGCACGACAAAGGGCCTA-TTCTGCCGATGGTG-CC
1 CCTAGGTGC-CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTT-TGCCGATGGTGTCC
*
25029559 TGAGGCTCCCGGACATCCAAGCA
64 -GAGGCTCCCGCACATCCAAGCA
* * * * ** * * * * **
25029582 CCGAGCTGCTGATGGTGCCCGAGGCTCCCTTACGACCAAGGGCCCAGTTTTCCGATGTTATAAGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA
* * *
25029647 GGCGCCCGCACATCCGAGCG
66 GGCTCCCGCACATCCAAGCA
* *
25029667 CCTAGGTGCCGATGGTGCCCGTGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA
*
25029732 GGTTCCCGCACATCCAAGCA
66 GGCTCCCGCACATCCAAGCA
* * * * * *
25029752 CCAAGGTGTCGATGGTGCTCAAGGCTCCCGCACGACCAAGGGCCTAGTTTGTCGATGGTGTCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA
* **
25029817 GGCTCCCGCA-AGACCAAGGG
66 GGCTCCCGCACA-TCCAAGCA
* * ** * * * *
25029837 CCTAGTTTGCTGATCATGCCCGAGGCTCTCGCACGACCACGGCCCTAGTTTACCGATGGTGTCTG
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCG
* ** *
25029902 AGGCTCCCGTACATCTGAGCG
65 AGGCTCCCGCACATCCAAGCA
* * * *
25029923 CGTAGGTGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGTTCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA
* * * **
25029988 GGCTCCCGGACCTCCGAGTG
66 GGCTCCCGCACATCCAAGCA
* * * *
25030008 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGAGCCTAGGTT-ACGATGGTGGCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA
* *
25030072 GGCTCCCACACATCCAGGCA
66 GGCTCCCGCACATCCAAGCA
* * * * * * * *
25030092 CCTAGGTGCTGATGGTGCCCAAGGTTCTCGCATGACCAACGGCTTAGGTTGCTGATGGTGTCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA
* * *
25030157 GGCTCCGGGACATCCTAGCA
66 GGCTCCCGCACATCCAAGCA
* * ** * *
25030177 CCAAGGTGTCGATGGTGCCTAAGGCTCCCGCACGACCAAAGGCCTA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA
25030223 TGCTACCGGA
Statistics
Matches: 586, Mismatches: 130, Indels: 21
0.80 0.18 0.03
Matches are distributed among these distances:
84 73 0.12
85 439 0.75
86 73 0.12
87 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (85 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA
GGCTCCCGCACATCCAAGCA
Found at i:25029609 original size:42 final size:42
Alignment explanation
Indices: 25029465--25030209 Score: 235
Period size: 42 Copynumber: 17.5 Consensus size: 42
25029455 CTAGTTTTTC
* *
25029465 GATGGTGTCCGAGGCTCCCGCACATCCAAGCACCTAGGT-CTT
1 GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGCTGC-T
* * * ** * *
25029507 GATGGTGGCCGAGGCTCTCGCACGA-CAAAGGGCCTATTCTGCC
1 GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTA-GCTGCT
* * *
25029550 GATGGTGCCTGAGGCTCCCGGACATCCAAGCACCGAGCTGCT
1 GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGCTGCT
** ** * * * *
25029592 GATGGTGCCCGAGGCTCCCTTACGA-CCAAGGGCCCAGTTTTCC
1 GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAG-CTGCT
* **** * * * * *
25029635 GATGTTATAAGAGGCGCCCGCACATCCGAGCGCCTAGGTGCC
1 GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGCTGCT
* * ** * *
25029677 GATGGTGCCCGTGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTA-GCTGCT
* * * *
25029720 GATGGTGTCCGAGGTTCCCGCACATCCAAGCACCAAGGTG-T
1 GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGCTGCT
* * ** *
25029761 CGATGGTGCTCAAGGCTCCCGCACGA-CCAAGGGCCTAGTTTG-T
1 -GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAG-CTGCT
* * ** *
25029804 CGATGGTGTCCGAGGCTCCCGCA-AGACCAAGGGCCTAGTTTGCT
1 -GATGGTGCCCGAGGCTCCCGCACA-TCCAAGCACCTAG-CTGCT
** * * * * *
25029848 GATCATGCCCGAGGCTCTCGCACGA-CCACGGC-CCTAGTTTACC
1 GATGGTGCCCGAGGCTCCCGCAC-ATCCA-AGCACCTAG-CTGCT
* * * ** * * * *
25029891 GATGGTGTCTGAGGCTCCCGTACATCTGAGCGCGTAGGTGCC
1 GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGCTGCT
* * ** * *
25029933 GATGGTGCCCGAGGCTCTCGCACAACCAAGGGCCTAGGTTGCC
1 GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTA-GCTGCT
** * * * ** * *
25029976 GATGGTGTTCGAGGCTCCCGGACCTCCGAGTGCCTAGGTGCC
1 GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGCTGCT
* * *
25030018 GATGGTGCCCGAGGCTCTCGCACGA-CCAAG-AGCCTAGGTTAC-
1 GATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCA-CCTA-GCTGCT
* * * *
25030060 GATGGTGGCCGAGGCTCCCACACATCCAGGCACCTAGGTGCT
1 GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGCTGCT
* * * * * * *
25030102 GATGGTGCCCAAGGTTCTCGCATGA-CCAA-CGGCTTAGGTTGCT
1 GATGGTGCCCGAGGCTCCCGCA-CATCCAAGC-ACCTA-GCTGCT
* * * * * *
25030145 GATGGTGTCCGAGGCTCCGGGACATCCTAGCACCAAGGTG-T
1 GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGCTGCT
**
25030186 CGATGGTGCCTAAGGCTCCCGCAC
1 -GATGGTGCCCGAGGCTCCCGCAC
25030210 GACCAAAGGC
Statistics
Matches: 517, Mismatches: 152, Indels: 68
0.70 0.21 0.09
Matches are distributed among these distances:
41 7 0.01
42 261 0.50
43 244 0.47
44 4 0.01
45 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.19
Consensus pattern (42 bp):
GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGCTGCT
Found at i:25030542 original size:42 final size:42
Alignment explanation
Indices: 25030488--25030782 Score: 349
Period size: 43 Copynumber: 6.9 Consensus size: 42
25030478 ACTTTTGCTT
* *
25030488 TGGTGCTTGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGA
* *
25030530 TGGTGCTCGAGGCTTTCGCACATCCAAGCACCAAGGTTGTCGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGG-TGCCGA
* *
25030573 TGGTGCTCGAGGCTCTCGCACATACAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGA
* * *
25030615 TTGTGCTCGAGCCTCTCGCACATCCAAGCACCAAGGTTACCGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGG-TGCCGA
* * *
25030658 TGGTGGC-CGAGGCTCTAGCACATCCGAGCACCAAGGTGTCGA
1 TGGT-GCTCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGA
* * * ** *
25030700 TGGTGCTCGAGGCTCCCCCTCATCTGAGCCACCAAGGTTCCGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAG-CACCAAGGTGCCGA
* * *
25030743 TGGTGTTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGC
1 TGGTGCTCGAGGCTCTCGCACATCCAAG-CACCAAGGTGC
25030783 TGGAGGCTCT
Statistics
Matches: 219, Mismatches: 29, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
41 2 0.01
42 94 0.43
43 121 0.55
44 2 0.01
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.19
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGA
Found at i:25030634 original size:85 final size:84
Alignment explanation
Indices: 25030488--25030782 Score: 367
Period size: 85 Copynumber: 3.5 Consensus size: 84
25030478 ACTTTTGCTT
* *
25030488 TGGTGCTTGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTTTCGCACAT
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCACAT
*
25030553 CCAAGCACCAAGGTTGTCGA
66 CCAAGCACCAAGGTT-CCGA
* * * * *
25030573 TGGTGCTCGAGGCTCTCGCACATACAAGCACCAAGGTACCGATTGTGCTCGAGCCTCTCGCACAT
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCACAT
25030638 CCAAGCACCAAGGTTACCGA
66 CCAAGCACCAAGGTT-CCGA
** * * * * *
25030658 TGGTGGC-CGAGGCTCTAGCACATCCGAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCCCTCA
1 TGGT-GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCACA
**
25030722 TCTGAGCCACCAAGGTTCCGA
65 TCCAAG-CACCAAGGTTCCGA
* *
25030743 TGGTGTTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGC
1 TGGTGCTCGAGGCTCCCGCACATCCAAG-CACCAAGGTGC
25030783 TGGAGGCTCT
Statistics
Matches: 181, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
84 1 0.01
85 158 0.87
86 22 0.12
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.19
Consensus pattern (84 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCACAT
CCAAGCACCAAGGTTCCGA
Found at i:25034909 original size:85 final size:85
Alignment explanation
Indices: 25034718--25036185 Score: 700
Period size: 85 Copynumber: 17.2 Consensus size: 85
25034708 CACCAAGGTG
** ** * * **
25034718 CCGATGGTG-CTCGAGGCTCCCGCACATCCAAGCACTAAGGTTGCCGATAGTGTCCGAGGCTGTC
1 CCGATGGTGTC-CGAGGCTCCCGCACATCTGAGCACCGAGG-TGCCGATGGTGCCCGAGGCTCCC
** * *
25034782 GCACGATGAAGGGCCTA-TTCTG
64 GCACGACCAAGGGCCTAGGT-TA
* * *
25034804 CCGAAGGTG-CCAGAGGCTCCCGCACATCTGAGCACCGAGATGTCGATGGTGCCCGAGGCTCCCG
1 CCGATGGTGTCC-GAGGCTCCCGCACATCTGAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCG
* *
25034868 CACGACCAAGGGCTTAGTTTA
65 CACGACCAAGGGCCTAGGTTA
* * * * **
25034889 CCGATCGTGTCCGAGCCTCCCGTACAT-TCGAGCCCCTTGGTGCCGATGGTGCCCGAGGC-CCTC
1 CCGATGGTGTCCGAGGCTCCCGCACATCT-GAGCACCGAGGTGCCGATGGTGCCCGAGGCTCC-C
* * *
25034952 GAACGACCGAGGGCCTAGGTTC
64 GCACGACCAAGGGCCTAGGTTA
* * * * * * *
25034974 CCGATGGTGTCCGAGGTTCCCGGACATCCGAGCACCAAGGTGTCGATGGTGCTCGAGACTCCCGC
1 CCGATGGTGTCCGAGGCTCCCGCACATCTGAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGC
* * *
25035039 ACGACCAAGGGCCTACGATG
66 ACGACCAAGGGCCTAGGTTA
* *** * * *
25035059 CGGACATTGTCTGAGGCTCCCGCACATCAT-AGCACCGAGGGGCCGATGTTGCCCGAGGCTCCCG
1 CCGATGGTGTCCGAGGCTCCCGCACATC-TGAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCG
* * *
25035123 -ACCGATCAAGGGCCTAGTTTG
65 CA-CGACCAAGGGCCTAGGTTA
* ** * * * * ** *
25035144 CCGATGGTGTCTGACACTCCCGCACA-CTCGAGCGCCCAGGTACCGATGGTGCCCTAAACTCTCG
1 CCGATGGTGTCCGAGGCTCCCGCACATCT-GAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCG
*
25035208 CACGTCCAAGGG-CTAAGGTTA
65 CACGACCAAGGGCCT-AGGTTA
* * * ** ** * * * * *
25035229 TCGATGGTGCCCGAGGCTCCCGTACGA-CCAAGGGCCTAGTTTGCCGATGGTGTCCAAGGCTCCA
1 CCGATGGTGTCCGAGGCTCCCGCAC-ATCTGAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCC
** *
25035293 GCAC-ATCCAAGCACCTAGG-TC
64 GCACGA-CCAAGGGCCTAGGTTA
* * * * * **
25035314 CCGATGCTTGT-CGAGGCTCTCGTACGA-C-GAACGACCTATTCTGCCGATGGTGCCCGAGGCTC
1 CCGATG-GTGTCCGAGGCTCCCGCAC-ATCTGAGC-ACCGA-GGTGCCGATGGTGCCCGAGGCTC
* * ** *
25035376 CGGTAC-ATCCAAGCACCGAGG--A
62 CCGCACGA-CCAAGGGCCTAGGTTA
* * * ** ** * * * *
25035398 GCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGTTTACCGATGGTGCCCGAGGCTCTC
1 -CCGATGGTGTCCGAGGCTCCCGCACATCTGAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCCC
*
25035463 GCACGACCAAGGGCCTAGGTTG
64 GCACGACCAAGGGCCTAGGTTA
* * ** * * *
25035485 CCGATGGTGTCTGAGGTTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGC
1 CCGATGGTGTCCGAGGCTCCCGCACATCTGAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGC
**
25035550 ACGACCAAGGGTTTAGG-TA
66 ACGACCAAGGGCCTAGGTTA
* * * * * ** * * * * *
25035569 GTCGATGGTGCCCGAGCCTCCCGCAAGACCT-AGGGCCTAGTTTACCGATGGTGTCCGACGCTCC
1 -CCGATGGTGTCCGAGGCTCCCGC-ACATCTGAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCC
* * * *
25035633 CGCAC-ATCCGAGTGCCCAGG-TG
63 CGCACGA-CCAAGGGCCTAGGTTA
* * * * * * * *
25035655 CCGATGGTGCCCGAGGCTCTCGCACGACCACGGGC-CTG-GTTTGCCGATGGTGTCCGAGGCTCC
1 CCGATGGTGTCCGAGGCTCCCGCAC-ATC-TGAGCACCGAG-GTGCCGATGGTGCCCGAGGCTCC
*
25035718 CGCAC-ATCCGAA-CGCCTAGG-TA
63 CGCACGA-CC-AAGGGCCTAGGTTA
* * ** ** * * * *
25035740 CCGATGGTGCCCGAGGCTTCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGTTCCC
1 CCGATGGTGTCCGAGGCTCCCGCAC-ATCTGAGCACCGAGG-TGCCGATGGTGCCCGAGGCTCCC
* ** *
25035804 GCAC-ATCTAAGCACCAAGGTGT-
64 GCACGA-CCAAGGGCCTAGGT-TA
* ** ** * * *
25035826 -CGATGGTG-CTCGAGGCTCCCGTACGA-CCAAGGGCCTAGGTGGCCGATGGTACCCAAGGCTCC
1 CCGATGGTGTC-CGAGGCTCCCGCAC-ATCTGAGCACCGAGGT-GCCGATGGTGCCCGAGGCTCC
* * * * *
25035888 CGTAAGACCAAGGCCCTAGTTTG
63 CGCACGACCAAGGGCCTAGGTTA
* * * * *
25035911 CCGATGGTGTCCGATGCTCCCACACATCCGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCCCGC
1 CCGATGGTGTCCGAGGCTCCCGCACATCTGAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
25035976 ACGACCACGGG-TTAGTTTG
66 ACGACCAAGGGCCTAGGTTA
** * * * * * * * *
25035995 CCGATGGTGTGTGAGGCTCCCGTACATCTGAGCGCCTAGGTGCTGATGGTGCCTGTGGCTCTCGT
1 CCGATGGTGTCCGAGGCTCCCGCACATCTGAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGC
* *
25036060 ACGATCAAGGGCCTAGGTTT
66 ACGACCAAGGGCCTAGGTTA
* * * * *
25036080 CCAATGGTGTCCAAGGCTCCCGCACATCTGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGC
1 CCGATGGTGTCCGAGGCTCCCGCACATCTGAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGC
*
25036145 ACGACCAAAGGCCTAGGTTA
66 ACGACCAAGGGCCTAGGTTA
* *
25036165 CCGATGATGCCCGAGGCTCCC
1 CCGATGGTGTCCGAGGCTCCC
25036186 ACACGACAAA
Statistics
Matches: 1064, Mismatches: 268, Indels: 101
0.74 0.19 0.07
Matches are distributed among these distances:
83 3 0.00
84 88 0.08
85 797 0.75
86 171 0.16
87 5 0.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (85 bp):
CCGATGGTGTCCGAGGCTCCCGCACATCTGAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGC
ACGACCAAGGGCCTAGGTTA
Found at i:25035291 original size:213 final size:211
Alignment explanation
Indices: 25035017--25036317 Score: 1107
Period size: 213 Copynumber: 6.1 Consensus size: 211
25035007 ACCAAGGTGT
* * * * *** *
25035017 CGATGGTGCTCGAGACTCCCGCACGACCAAGGGCCTACG-ATGCGGACATTGTCTGAGGCTCCCG
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GTTTGCCGATGGTGTCCGAGGCTCCCG
* * * *
25035081 CACATCATAGCACCGAGGGGCCGATGTTGCCCGAGGCTCCCG-ACCGATCAAGGGCCTAGTTTGC
65 CACATCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCA-CGACCAAGGGCCTAGTTTGC
** * * * * ** *
25035145 CGATGGTGTCTGACACTCCCGCACACTCGAGCGCCCAGGTACCGATGGTGCCCTAAACTCTCGCA
128 CGATGGTGTCTGAGGCTCCCGCACA-TCAAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGCA
*
25035210 CGTCCAAGGG-CTAAGGTTAT
192 CGTCCAAGGGCCT-AGGTTAC
* * *
25035230 CGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGTTTGCCGATGGTGTCCAAGGCTCCAGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
* * * * * * * *
25035295 ACATCCAAGCACCTAGGTCCCGATGCTTG-TCGAGGCTCTCGTACGACGAACGACCTA-TTCTGC
66 ACAT-CAAGCACCTAGGTGCCGATG-GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT-TGC
* * * * * *
25035358 CGATGGTGCCCGAGGCTCCGGTACATCCAAGCACCGAGG-AGCCGATGGTGCCCGAGGCTCCCAC
128 CGATGGTGTCTGAGGCTCCCGCACAT-CAAGCACCTAGGTA-CCGATGGTGCCCGAGGCTCCCGC
*
25035422 ACGTCCAAGGGCCTAGTTTAC
191 ACGTCCAAGGGCCTAGGTTAC
* * * *
25035443 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGTTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
* * * ** * * *
25035508 ACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGTTTAGGTAGTCG
66 ACAT-CAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCG
* * * * * * ** * * *
25035573 ATGGTGCCCGAGCCTCCCGCAAGACCTAGGGCCTAGTTTACCGATGGTGTCCGACGCTCCCGCAC
130 ATGGTGTCTGAGGCTCCCGC-ACATCAAGCACCTAG-GTACCGATGGTGCCCGAGGCTCCCGCAC
* * * * *
25035638 ATCCGAGTGCCCAGG-TGC
193 GTCCAAGGGCCTAGGTTAC
* * *
25035656 CGATGGTGCCCGAGGCTCTCGCACGACCACGGGCCTGGTTTGCCGATGGTGTCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
* * * *
25035721 ACATCCGAA-CGCCTAGGTACCGATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCC
66 ACAT-C-AAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCC
* * ** * *
25035785 GATGGTGTCTGAGGTTCCCGCACATCTAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGTAC
129 GATGGTGTCTGAGGCTCCCGCACATC-AAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGCAC
* **
25035850 GACCAAGGGCCTAGGTGGC
193 GTCCAAGGGCCTAGGTTAC
* * * * * * *
25035869 CGATGGTACCCAAGGCTCCCGTAAGACCAAGGCCCTAGTTTGCCGATGGTGTCCGATGCTCCCAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
* * * * *
25035934 ACATCCGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCACGGG-TTAGTTTGCCG
66 ACAT-CAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCG
* * * * * * * * * *
25035998 ATGGTGTGTGAGGCTCCCGTACATCTGAGCGCCTAGGTGCTGATGGTGCCTGTGGCTCTCGTACG
130 ATGGTGTCTGAGGCTCCCGCACATC-AAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGCACG
*
25036063 AT-CAAGGGCCTAGGTTTC
194 -TCCAAGGGCCTAGGTTAC
* * * ** * * * * *
25036081 CAATGGTGTCCAAGGCTCCCGCAC-ATCTGAGCGCCCAG-GTGCCGATGGTGCCCGAGGCTCTCG
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCG
* * * * * * *
25036144 CACGACCAAAG-GCCTAGGTTACCGATGATGCCCGAGGCTCCCACACGACAAAGGGCCTAGTTTC
65 CAC-ATC-AAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTG
* * *
25036208 CCGATGGTGTCTGAGGCTCCCGCACATCCAAGCACCTTGGTGCCGATGGTGCCCGAGGCTCTCGC
127 CCGATGGTGTCTGAGGCTCCCGCACAT-CAAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGC
** *
25036273 ACAACCAATGGCCTAGGTTAC
191 ACGTCCAAGGGCCTAGGTTAC
* *
25036294 CGATGGTGTCCGAGGCTCTCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
25036318 ATCCTAGCAC
Statistics
Matches: 876, Mismatches: 187, Indels: 50
0.79 0.17 0.04
Matches are distributed among these distances:
211 31 0.04
212 178 0.20
213 620 0.71
214 46 0.05
215 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (211 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
ACATCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGA
TGGTGTCTGAGGCTCCCGCACATCAAGCACCTAGGTACCGATGGTGCCCGAGGCTCCCGCACGTC
CAAGGGCCTAGGTTAC
Found at i:25035446 original size:128 final size:127
Alignment explanation
Indices: 25034931--25036365 Score: 601
Period size: 128 Copynumber: 11.2 Consensus size: 127
25034921 CCCCTTGGTG
* * * * * * * *
25034931 CCGATGGTGCCCGAGGCCCTCGAACGACCGAGGGCCTAGGTTCCCGATGGTGTCCGAGGTTCCCG
1 CCGATGGTGCCCGAGGCTCTCGCACGACCAACGACCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* * * * * * * * *
25034996 GACATCCGAGCACCAAGGTGTCGATGGTGCTCGAGACTCCCGCACGACCAAGGGCCTACGATG
66 TACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTA-GGTA
* *** * * * * * * *
25035059 CGGACATTGTCTGAGGCTCCCGCAC-ATCATA-GCACCGAGG-GGCCGATGTTGCCCGAGGCTCC
1 CCGATGGTGCCCGAGGCTCTCGCACGACCA-ACG-ACCTAGGTTGCCGATGGTGCCCGAGGCTCC
** * * * * ** * * *
25035121 CG-ACCGAT-CAAGGGCCTAGTTTGCCGATGGTGTCTGACACTCCCGCACAC-T-CGAGCGCCCA
64 CGTA-C-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCT-CC-CACACGTCCAAGGGCCTA
25035182 GGTA
124 GGTA
* ** * ** **
25035186 CCGATGGTGCCCTAAACTCTCGCACGTCCAA-GGGCTAAGGTTATCGATGGTGCCCGAGGCTCCC
1 CCGATGGTGCCCGAGGCTCTCGCACGACCAACGACCT-AGGTTGCCGATGGTGCCCGAGGCTCCC
** * * * * * **
25035250 GTACGA-CCAAGGGCCTAGTTTGCCGATGGTGTCCAAGGCT-CCAGCACATCCAAGCACCTAGGT
65 GTAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCA-CACGTCCAAGGGCCTAGGT
*
25035313 C
127 A
* * * * *
25035314 CCGATGCTTG-TCGAGGCTCTCGTACGACGAACGACCTA-TTCTGCCGATGGTGCCCGAGGCTCC
1 CCGATG-GTGCCCGAGGCTCTCGCACGACCAACGACCTAGGT-TGCCGATGGTGCCCGAGGCTCC
* * * *
25035377 GGTACATCCAAGCACCGAGGAGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGTTTA
64 CGTACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAG-GTA
* * * * *
25035442 CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGTTCCCG
1 CCGATGGTGCCCGAGGCTCTCGCACGACCAACGACCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* * * * * **
25035507 CACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGTTTAGGTA
66 TACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGGTA
* * * * * * * * * * *
25035569 GTCGATGGTGCCCGAGCCTCCCGCAAGACCTAGGGCCTAGTTTACCGATGGTGTCCGACGCTCCC
1 -CCGATGGTGCCCGAGGCTCTCGCACGACCAACGACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * ** * * * * * *
25035634 GCACATCCGAGTGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCACGGGCCT-GGTTTG
65 GTACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGG--TA
* * * *
25035698 CCGATGGTGTCCGAGGCTCCCGCAC-ATCCGAACG-CCTAGG-TACCGATGGTGCCCGAGGCTTC
1 CCGATGGTGCCCGAGGCTCTCGCACGA-CC-AACGACCTAGGTTGCCGATGGTGCCCGAGGCTCC
* ** * * * * * * * ** *
25035760 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGTTCCCGCACATCTAAGCACCAAGGT
64 CGTAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGGT
*
25035824 G
127 A
* * * * * * * * *
25035825 TCGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGTGGCCGATGGTACCCAAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCTCGCACGACCAACGACCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
* * * * * * * * * *
25035890 TA-AGACCAAGGC-CCTAGTTTGCCGATGGTGTCCGATGCTCCCACACATCCGAGCGCCCAGGTG
66 TACA-TCCAA-GCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGGTA
* *** * ***
25035953 CCGATGGTGCCCGAGGCTCCCGCACGACC-ACGGGTTAGTTTGCCGATGGTGTGTGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCTCGCACGACCAACGACCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
** * * * * * * ** *
25036017 TACATCTGAGCGCCTAGGTGCTGATGGTGCCTGTGGCTCTCGTACGAT-CAAGGGCCTAGGTTT
66 TACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACG-TCCAAGGGCCTAGG-TA
* * * * * * * *
25036080 CCAATGGTGTCCAAGGCTCCCGCAC-ATCTGAGCG-CCCAGG-TGCCGATGGTGCCCGAGGCTCT
1 CCGATGGTGCCCGAGGCTCTCGCACGA-C-CAACGACCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * * * *
25036142 CGCACGA-CCAAAG-GCCTAGGTTACCGATGATGCCCGAGGCTCCCACACGACAAAGGGCCTAGT
64 CGTAC-ATCC-AAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAG-
* *
25036205 TTC
125 GTA
* * * * *
25036208 CCGATGGTGTCTGAGGCTCCCGCAC-ATCCAA-GCACCTTGG-TGCCGATGGTGCCCGAGGCTCT
1 CCGATGGTGCCCGAGGCTCTCGCACGA-CCAACG-ACCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * * * * * * * * ** *
25036270 CGCACAACCAATG-GCCTAGGTTACCGATGGTGTCCGAGGCTCTCGCACATCCTAGCACCAAGGT
64 CGTACATCCAA-GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGGT
25036334 A
127 A
25036335 CCGATGGTGCCCGAGGCTC-CTGCACGACCAA
1 CCGATGGTGCCCGAGGCTCTC-GCACGACCAA
25036366 GGGCCTATGC
Statistics
Matches: 996, Mismatches: 255, Indels: 113
0.73 0.19 0.08
Matches are distributed among these distances:
125 2 0.00
126 43 0.04
127 277 0.28
128 653 0.66
129 17 0.02
130 4 0.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (127 bp):
CCGATGGTGCCCGAGGCTCTCGCACGACCAACGACCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
TACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGGTA
Found at i:25035533 original size:298 final size:294
Alignment explanation
Indices: 25034847--25036372 Score: 967
Period size: 298 Copynumber: 5.1 Consensus size: 294
25034837 ACCGAGATGT
* * * * * *
25034847 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTACCGATCGTGTCCGAGCCTCCCGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCTGAGGCTCCCGC
* * * ** * * * *
25034912 ACATTCGAGCCCCTTGGTGCCGATGGTGCCCGAGGC-CCTCGAACGACCGAGGGCCTAGGTTCCC
66 ACATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCTCC-CGTACGACCAAGGGCCTAGGTTGCC
* * * * * * ** *
25034976 GATGGTGTCCGAGGTTCCCGGACATCCGAGCACCAAGGTGTCGATGGTGCTCGAGACTCCCGCAC
130 GATGGTGCCCAAGGCTCCCGCACATCCAAGCACCTAGGTACCGATGGTG-TCGAGGCTCCCGCAC
* * * *** * * *
25035041 GACCAAGGGCCTACGATGCGGACATTGTCTGAGGCTCCCGCACAT-CATAGCACCGAGGGGCCGA
194 GACGAA-CGCCTA-GATGCCGATGGTGCCCGAGGCT-CCGCACATCCA-AGCACCGAGGAGCCGA
* *
25035105 TGTTGCCCGAGGCTCCCGAC-CGAT-CAAGGGCCTAGTTTGC
255 TGGTGCCCGAGGCTCCC-ACACG-TCCAAGGGCCTAGTTTAC
* * ** * * * * ** *
25035145 CGATGGTGTCTGACACTCCCGCAC-ACTCGAGCGCCCAGG-TACCGATGGTGCCCT-AAACTCTC
1 CGATGGTGCCCGAGGCTCCCGCACGAC-CAAGGGCCTAGGTTACCGATGGTG-TCTGAGGCTCCC
* ** * * *
25035207 GCACGTCCAAGGGCTAAGGTTATCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGTTTG
64 GCACATCCAAGCACCAAGG-TGTCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTG
* * * * * *
25035272 CCGATGGTGTCCAAGGCTCCAGCACATCCAAGCACCTAGGTCCCGATGCTTGTCGAGGCTCTCGT
128 CCGATGGTGCCCAAGGCTCCCGCACATCCAAGCACCTAGGTACCGATG-GTGTCGAGGCTCCCGC
** *
25035337 ACGACGAACGACCTATTCTGCCGATGGTGCCCGAGGCTCCGGTACATCCAAGCACCGAGGAGCCG
192 ACGACGAACG-CCTA-GATGCCGATGGTGCCCGAGGCTCC-GCACATCCAAGCACCGAGGAGCCG
25035402 ATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGTTTAC
254 ATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGTTTAC
* * *
25035443 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGTTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCTGAGGCTCCCGC
* * ** * *
25035508 ACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGTTTAGGTAGTCG
66 ACATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCG
* * * * ** * *
25035573 ATGGTGCCCGAGCCTCCCGCA-AGACCTAGGGCCTAGTTTACCGATGGTGTCCGACGCTCCCGCA
131 ATGGTGCCCAAGGCTCCCGCACA-TCCAAGCACCTAG-GTACCGATGGTGT-CGAGGCTCCCGCA
** * * * ** **
25035637 C-ATCCGAGTGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCACGGGCCTG-GTTTGC
193 CGA--CGAACGCCTAGATGCCGATGGTGCCCGAGGCTC-CGCAC-ATCCAAGCACC-GAG-GAGC
* * * * *
25035699 CGATGGTGTCCGAGGCTCCCGCACATCCGAA-CGCCTAG-GTAC
252 CGATGGTGCCCGAGGCTCCCACACGTCC-AAGGGCCTAGTTTAC
* * *
25035741 CGATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGTTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCTGAGGCTCCCGC
* * *
25035806 ACATCTAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGTGGCCG
66 ACATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCG
* * * * * * *
25035871 ATGGTACCCAAGGCTCCCGTA-AGACCAAGGC-CCTAGTTTGCCGATGGTGTCCGATGCTCCCAC
131 ATGGTGCCCAAGGCTCCCGCACA-TCCAA-GCACCTAG-GTACCGATGGTGT-CGAGGCTCCCGC
* * * * **** **
25035934 AC-ATCCGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCACG-GGTTAGTTTGC
192 ACGA--CGAACGCCTAGATGCCGATGGTGCCCGAGGCT-CCGCAC-ATCCAAGCACCGAG-GAGC
*** ** * ** * * *
25035996 CGATGGTGTGTGAGGCTCCCGTACATCTGAGCGCCTAG-GTGC
252 CGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGTTTAC
* * * * * * * * **
25036038 TGATGGTGCCTGTGGCTCTCGTACGATCAAGGGCCTAGGTTTCCAATGGTGTCCAAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCTGAGGCTCCCGC
** * * * * * * *
25036103 ACATCTGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTACCG
66 ACATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCG
* * * * ** * *
25036168 ATGATGCCCGAGGCTCCCACACGA-CAAAGGGCCTAGTTTCCCGATGGTGTCTGAGGCTCCCGCA
131 ATGGTGCCCAAGGCTCCCGCAC-ATCCAAGCACCTAG-GTACCGATGGTGTC-GAGGCTCCCGCA
* * * * * * *
25036232 C-ATCCAAGCACCTTGGTGCCGATGGTGCCCGAGGCTCTCGCACAACCAATG-GCCTAGGTTA-C
193 CGA-CGAA-CGCCTAGATGCCGATGGTGCCCGAGGCTC-CGCACATCCAA-GCACCGAGG--AGC
* * * * * ** * *
25036294 CGATGGTGTCCGAGGCTCTCGCACATCCTAGCACCAAG-GTAC
252 CGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGTTTAC
*
25036336 CGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTA
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
25036373 TGCTGCTGGA
Statistics
Matches: 992, Mismatches: 199, Indels: 74
0.78 0.16 0.06
Matches are distributed among these distances:
296 7 0.01
297 265 0.27
298 617 0.62
299 97 0.10
300 6 0.01
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (294 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCTGAGGCTCCCGC
ACATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCG
ATGGTGCCCAAGGCTCCCGCACATCCAAGCACCTAGGTACCGATGGTGTCGAGGCTCCCGCACGA
CGAACGCCTAGATGCCGATGGTGCCCGAGGCTCCGCACATCCAAGCACCGAGGAGCCGATGGTGC
CCGAGGCTCCCACACGTCCAAGGGCCTAGTTTAC
Found at i:25036043 original size:42 final size:42
Alignment explanation
Indices: 25035613--25036354 Score: 202
Period size: 42 Copynumber: 17.5 Consensus size: 42
25035603 GCCTAGTTTA
* * * * * *
25035613 CCGATGGTGTCCGACGCTCCCGCACATCCGAGTGCCCAGGTG
1 CCGATGGTGTCTGAGGCTCCCGTACATCTGAGCGCCTAGGTG
* * * * * *
25035655 CCGATGGTGCCCGAGGCTCTCGCACGA-C-CACGGGCCT-GGTTTG
1 CCGATGGTGTCTGAGGCTCCCGTAC-ATCTGA-GCGCCTAGG--TG
* * * * *
25035698 CCGATGGTGTCCGAGGCTCCCGCACATCCGAACGCCTAGGTA
1 CCGATGGTGTCTGAGGCTCCCGTACATCTGAGCGCCTAGGTG
* * * * ** *
25035740 CCGATGGTGCCCGAGGCTTCCGCACGA-CCAAGGGCCTAGGTTG
1 CCGATGGTGTCTGAGGCTCCCGTAC-ATCTGAGCGCCTAGG-TG
* * * * *
25035783 CCGATGGTGTCTGAGGTTCCCGCACATCTAAGCACCAAGGTG
1 CCGATGGTGTCTGAGGCTCCCGTACATCTGAGCGCCTAGGTG
* ** *
25035825 TCGATGGTG-CTCGAGGCTCCCGTACGA-CCAAGGGCCTAGGTGG
1 CCGATGGTGTCT-GAGGCTCCCGTAC-ATCTGAGCGCCTAGGT-G
** ** * ** *
25035868 CCGATGGTACCCAAGGCTCCCGTA-AGACCAAG-GCCCTAGTTTG
1 CCGATGGTGTCTGAGGCTCCCGTACA-TCTGAGCG-CCTAG-GTG
* * ** * *
25035911 CCGATGGTGTCCGATGCTCCCACACATCCGAGCGCCCAGGTG
1 CCGATGGTGTCTGAGGCTCCCGTACATCTGAGCGCCTAGGTG
* * * * ** *
25035953 CCGATGGTGCCCGAGGCTCCCGCACGA-C-CA-CGGGTTAGTTTG
1 CCGATGGTGTCTGAGGCTCCCGTAC-ATCTGAGC-GCCTAG-GTG
*
25035995 CCGATGGTGTGTGAGGCTCCCGTACATCTGAGCGCCTAGGTG
1 CCGATGGTGTCTGAGGCTCCCGTACATCTGAGCGCCTAGGTG
* * * * * * *
25036037 CTGATGGTGCCTGTGGCTCTCGTACGATC-AAGGGCCTAGGTTT
1 CCGATGGTGTCTGAGGCTCCCGTAC-ATCTGAGCGCCTAGG-TG
* ** * *
25036080 CCAATGGTGTCCAAGGCTCCCGCACATCTGAGCGCCCAGGTG
1 CCGATGGTGTCTGAGGCTCCCGTACATCTGAGCGCCTAGGTG
* * * * * ** *
25036122 CCGATGGTGCCCGAGGCTCTCGCACGACCAAAG-GCCTAGGTTA
1 CCGATGGTGTCTGAGGCTCCCGTAC-ATCTGAGCGCCTAGG-TG
* * * ** ** * * *
25036165 CCGATGATGCCCGAGGCTCCCACACGA-CAAAGGGCCTAGTTTC
1 CCGATGGTGTCTGAGGCTCCCGTAC-ATCTGAGCGCCTAG-GTG
* ** * *
25036208 CCGATGGTGTCTGAGGCTCCCGCACATCCAAGCACCTTGGTG
1 CCGATGGTGTCTGAGGCTCCCGTACATCTGAGCGCCTAGGTG
* * * * * ** *
25036250 CCGATGGTGCCCGAGGCTCTCGCACAACCAATG-GCCTAGGTTA
1 CCGATGGTGTCTGAGGCTCCCGTACATCTGA-GCGCCTAGG-TG
* * * * * *
25036293 CCGATGGTGTCCGAGGCTCTCGCACATCCT-AGCACCAAGGTA
1 CCGATGGTGTCTGAGGCTCCCGTACAT-CTGAGCGCCTAGGTG
* *
25036335 CCGATGGTGCCCGAGGCTCC
1 CCGATGGTGTCTGAGGCTCC
25036355 TGCACGACCA
Statistics
Matches: 540, Mismatches: 122, Indels: 76
0.73 0.17 0.10
Matches are distributed among these distances:
40 1 0.00
41 11 0.02
42 266 0.49
43 253 0.47
44 9 0.02
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.19
Consensus pattern (42 bp):
CCGATGGTGTCTGAGGCTCCCGTACATCTGAGCGCCTAGGTG
Done.