Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 88 of 214
Found at i:25036263 original size:85 final size:85
Alignment explanation
Indices: 25035230--25036372 Score: 841
Period size: 85 Copynumber: 13.4 Consensus size: 85
25035220 CTAAGGTTAT
* * * *
25035230 CGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGTTTGCCGATGGTGTCCAAGGCTCCAGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGC
* *
25035295 ACATCCAAGCACCTAGGTCC
66 ACATCCAAGCGCCTAGGTGC
* * * * * * * *
25035315 CGATGCTTG-TCGAGGCTCTCGTACGACGAACGACCTA-TTCTGCCGATGGTGCCCGAGGCTCCG
1 CGATG-GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTT-TGCCGATGGTGCCCGAGGCTCCC
* * * *
25035378 GTACATCCAAGCACCGAGGAGC
64 GCACATCCAAGCGCCTAGGTGC
* * * *
25035400 CGATGGTGCCCGAGGCTCCCACACGTCCAAGGGCCTAGTTTACCGATGGTGCCCGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGC
*
25035465 ACGA-CCAAGGGCCTAGGTTGC
66 AC-ATCCAAGCGCCTAGG-TGC
* * * ** * * * *
25035486 CGATGGTGTCTGAGGTTCCCGCAC-ATCCAAGCACCAAG-GTGTCGATGGTGCTCGAGGCTCCCG
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCG
* ** *
25035549 CACGA-CCAAGGGTTTAGGTAGT
65 CAC-ATCCAAGCGCCTAGGT-GC
* * * * * *
25035571 CGATGGTGCCCGAGCCTCCCGCAAGACCTAGGGCCTAGTTTACCGATGGTGTCCGACGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGC
* * *
25035636 ACATCCGAGTGCCCAGGTGC
66 ACATCCAAGCGCCTAGGTGC
* * * *
25035656 CGATGGTGCCCGAGGCTCTCGCACGACCACGGGCCTGGTTTGCCGATGGTGTCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGC
*
25035721 ACATCCGAA-CGCCTAGGTAC
66 ACATCC-AAGCGCCTAGGTGC
* * * * *
25035741 CGATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGTTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
25035806 ACATCTAAGCACCAAGGTGT
66 ACATCCAAGCGCCTAGGTGC
* * * * * * *
25035826 CGATGGTGCTCGAGGCTCCCGTACGACCAAGGGCCTAGGTGGCCGATGGTACCCAAGGCTCCCGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGC
* *
25035891 A-AGACCAAG-GCCCTAGTTTGC
66 ACA-TCCAAGCG-CCTAG-GTGC
* * * * * * *
25035912 CGATGGTGTCCGATGCTCCCACAC-ATCCGAGCGCCCAG-GTGCCGATGGTGCCCGAGGCTCCCG
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCG
* ** *
25035975 CACGA-CCACG-GGTTAGTTTGC
65 CAC-ATCCAAGCGCCTAG-GTGC
*** * ** * * * * * *
25035996 CGATGGTGTGTGAGGCTCCCGTAC-ATCTGAGCGCCTAG-GTGCTGATGGTGCCTGTGGCTCTCG
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCG
* * *
25036059 TACGAT-CAAGGGCCTAGGTTTC
65 CAC-ATCCAAGCGCCTAGG-TGC
* * * ** * * * *
25036081 CAATGGTGTCCAAGGCTCCCGCAC-ATCTGAGCGCCCAG-GTGCCGATGGTGCCCGAGGCTCTCG
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCG
*
25036144 CACGA-CCAAAG-GCCTAGGTTAC
65 CAC-ATCC-AAGCGCCTAGG-TGC
* * * * * *
25036166 CGATGATGCCCGAGGCTCCCACACGACAAAGGGCCTAGTTTCCCGATGGTGTCTGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGC
* *
25036231 ACATCCAAGCACCTTGGTGC
66 ACATCCAAGCGCCTAGGTGC
* * * * * * *
25036251 CGATGGTGCCCGAGGCTCTCGCACAACCAATGGCCTAGGTTACCGATGGTGTCCGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
25036316 ACATCCTAGCACCAAGGTAC
66 ACATCCAAGCGCCTAGGTGC
*
25036336 CGATGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTA
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
25036373 TGCTGCTGGA
Statistics
Matches: 844, Mismatches: 186, Indels: 56
0.78 0.17 0.05
Matches are distributed among these distances:
84 75 0.09
85 635 0.75
86 133 0.16
87 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (85 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCTCCCGC
ACATCCAAGCGCCTAGGTGC
Found at i:25053889 original size:19 final size:19
Alignment explanation
Indices: 25053865--25053942 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
25053855 AATCATATCT
25053865 TCTAAGATTACATATCTTA
1 TCTAAGATTACATATCTTA
**
25053884 TCTAAGA-TATGTAATCTTA
1 TCTAAGATTACAT-ATCTTA
*
25053903 --TAA-AATA-ATATCTTA
1 TCTAAGATTACATATCTTA
*
25053918 --TAAGATTACATATCATA
1 TCTAAGATTACATATCTTA
25053935 TCTAAGAT
1 TCTAAGAT
25053943 CTCTAAGATT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
15 9 0.19
16 5 0.10
17 12 0.25
18 3 0.06
19 19 0.40
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (19 bp):
TCTAAGATTACATATCTTA
Found at i:25053905 original size:51 final size:51
Alignment explanation
Indices: 25053842--25053974 Score: 185
Period size: 51 Copynumber: 2.6 Consensus size: 51
25053832 CAATCAAATC
* * *
25053842 TCTAAGAATATAAAATCATATCTTCTAAGATTACATATCTTATCTAAGATA
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
* ** * *
25053893 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
*
25053944 TCTAAGATTATAAAATCATATCTTTTAAGAT
1 TCTAAGATTATAAAATCATATCTTATAAGAT
25053975 CATGTTTCCA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (51 bp):
TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:25057918 original size:39 final size:40
Alignment explanation
Indices: 25057836--25058020 Score: 241
Period size: 40 Copynumber: 4.7 Consensus size: 40
25057826 GCTCCTCGTT
* *
25057836 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
25057876 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25057915 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
25057955 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
*
25057996 CCAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25058021 CATCATTCAA
Statistics
Matches: 130, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 42 0.32
40 78 0.60
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:25057939 original size:79 final size:81
Alignment explanation
Indices: 25057836--25058020 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
25057826 GCTCCTCGTT
*
25057836 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
25057899 GGAT-TAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
25057915 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
25057980 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
25057996 CCAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25058021 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
78 3 0.03
79 56 0.60
80 27 0.29
81 7 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:25065804 original size:40 final size:40
Alignment explanation
Indices: 25065760--25065945 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
25065750 GCTCCTCGTT
*
25065760 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
25065800 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
25065840 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
25065880 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
* *
25065921 CCAA-GCCTTCGGGACGTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25065946 CATCATTCAA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:25079027 original size:27 final size:27
Alignment explanation
Indices: 25078971--25079024 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
25078961 TTTAAGTTTG
* * *
25078971 ATTGGTTTAATTTGATGGGTTTCTGTT
1 ATTGGATTAATTTGATGGATTCCTGTT
*
25078998 ATTGGATTAATTTCTATGGATTCCTGT
1 ATTGGATTAATTT-GATGGATTCCTGT
25079025 ATTTTAATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.52
Consensus pattern (27 bp):
ATTGGATTAATTTGATGGATTCCTGTT
Found at i:25084077 original size:43 final size:43
Alignment explanation
Indices: 25084003--25084164 Score: 175
Period size: 43 Copynumber: 3.8 Consensus size: 43
25083993 TTCTTTAGCT
* ** *
25084003 CGCACATCCCAGGTACCAAGGTGCCGGTGGTGCTTGAGGCTCC
1 CGCACATCCAAGCCACCAAGGTGCCGATGGTGCTTGAGGCTCC
* * *
25084046 CGTACATCCAAG-CACCAAGGTTGTCGATGGTG-TCTGAGGCTCT
1 CGCACATCCAAGCCACCAAGG-TGCCGATGGTGCT-TGAGGCTCC
* * * *
25084089 CGCACATTCAAGCCACCAAGGTGCCCATGCTGCTCGAGGCTCC
1 CGCACATCCAAGCCACCAAGGTGCCGATGGTGCTTGAGGCTCC
* *
25084132 CGCACATCCGAGCCACCAAGGTACCGATGGTGC
1 CGCACATCCAAGCCACCAAGGTGCCGATGGTGC
25084165 CCGATGCTCT
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
42 8 0.08
43 80 0.82
44 9 0.09
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (43 bp):
CGCACATCCAAGCCACCAAGGTGCCGATGGTGCTTGAGGCTCC
Found at i:25084160 original size:86 final size:86
Alignment explanation
Indices: 25084017--25084179 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 86
25084007 CATCCCAGGT
** * * * ** * *
25084017 ACCAAGGTGCCGGTGGTGCTTGAGGCTCCCGTACATCCAAGCACCAAGGTTGTCGATGGTGTCTG
1 ACCAAGGTGCCCATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTTACCGATGGTGCCCG
25084082 AGGCTCTCGCACATTCAAGCC
66 AGGCTCTCGCACATTCAAGCC
*
25084103 ACCAAGGTGCCCATGCTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGG-TACCGATGGTGCCC
1 ACCAAGGTGCCCATGCTGCTCGAGGCTCCCGCACATCCAAG-CACCAAGGTTACCGATGGTGCCC
*
25084167 GATGCTCTCGCAC
65 GAGGCTCTCGCAC
25084180 GATGAAGGGC
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
86 57 0.88
87 8 0.12
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.19
Consensus pattern (86 bp):
ACCAAGGTGCCCATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTTACCGATGGTGCCCG
AGGCTCTCGCACATTCAAGCC
Found at i:25084279 original size:85 final size:86
Alignment explanation
Indices: 25084119--25084305 Score: 241
Period size: 85 Copynumber: 2.2 Consensus size: 86
25084109 GTGCCCATGC
* *
25084119 TGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTACCGATGGTGCCCGATGCTCTCGCACGATG
1 TGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTACCGATGGTGCCCGAGGCTCTCGCACGACG
* * *
25084184 AAGGGCCTATTTTGCCTACGG
66 AAGGGACTATTCTGCCGACGG
* ** * * *
25084205 TGCTCGAGGCTCCTGCACATCCGAG-CACTGAGGTGCCGATGGTGCCTGAGGCTCTCGGACGACG
1 TGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTACCGATGGTGCCCGAGGCTCTCGCACGACG
* *
25084269 AAGGGACTATTCTGTCGATGG
66 AAGGGACTATTCTGCCGACGG
*
25084290 TGCCCGAGGCTCCCGC
1 TGCTCGAGGCTCCCGC
25084306 TGTGACAGCC
Statistics
Matches: 86, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
85 62 0.72
86 24 0.28
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (86 bp):
TGCTCGAGGCTCCCGCACATCCGAGCCACCAAGGTACCGATGGTGCCCGAGGCTCTCGCACGACG
AAGGGACTATTCTGCCGACGG
Found at i:25086041 original size:79 final size:81
Alignment explanation
Indices: 25085905--25086089 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
25085895 TTGAATGATG
* *
25085905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
25085969 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
25085984 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
25086046 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
25086064 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25086090 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:25086103 original size:40 final size:40
Alignment explanation
Indices: 25085906--25086089 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
25085896 TGAATGATGT
* * * *
25085906 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
25085946 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
25085986 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
25086024 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
25086065 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
25086090 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:25086111 original size:79 final size:79
Alignment explanation
Indices: 25085958--25086122 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
25085948 GGACTAAGAT
* * **
25085958 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
25086023 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
25086037 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
25086100 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
25086116 CCGAAGG
1 CCGAAGG
25086123 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:25087525 original size:43 final size:41
Alignment explanation
Indices: 25087477--25088648 Score: 186
Period size: 43 Copynumber: 27.6 Consensus size: 41
25087467 CACCGAGGTA
* *
25087477 CCGATGGTGCCCAAGGCTCCCGCGAGACCAAGGGCTTAGTTTG
1 CCGATGGTGCCCAAGGCTCTCGC-AGACCAAGGGCCTAG-TTG
* * * * * * *
25087520 CCGATGGTGTCTAAGCCTCTCGCACATCCGAGGCCCTAGGTG
1 CCGATGGTGCCCAAGGCTCTCGCAGA-CCAAGGGCCTAGTTG
25087562 CCGATGGTGCCCAAGGCTCTCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTA-GTTG
* * ** * * ** * *
25087605 CCGACGGTGTCTGAGGTTAC-CGCACATCCAAGCACCAAGGTG
1 CCGATGGTGCCCAAGGCT-CTCGCAGA-CCAAGGGCCTAGTTG
* * *** * * *
25087647 TCGATGGTACTTGAGGCTCCCGCACGACCAAAGGCCTAGGATG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTA-GTTG
* *** * * * * * ** *
25087690 CTGACATTGTCCGAGGCTCCCGCACATCATAGCACCAAGGTT-
1 CCGATGGTGCCCAAGGCTCTCGCAGACCA-AGGGCCTA-GTTG
* * * *
25087732 CCGTTGTTG-CCTAGGCTCCCGCACGACCAAGGGCCCT-GTTTG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGG-CCTAG-TTG
* * ** * * ** * * *
25087774 CCAATGGTGTCTGACGCTCCCGCTCATCCAAGTGCCCAGGTG
1 CCGATGGTGCCCAAGGCTCTCGCAGA-CCAAGGGCCTAGTTG
** * * * * *
25087816 CCGATACTGCCCGAGGCTCTCACATCACCATGGGCCTAGGTTA
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTA-GTTG
* * * * *
25087859 CCAATGGTGCCCGAGGCTCCCGAACGACCAAAGGCCTAGTTTG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTAG-TTG
* * * * ** * * *
25087902 CCTATGGTGTCCGAGGCTC-CTGCACATCCAAGCACCGAGGTC
1 CCGATGGTGCCCAAGGCTCTC-GCAGA-CCAAGGGCCTAGTTG
* * *
25087944 CCGATGGTGGCCGAGGCTCTCGCACGACCAAGGGCCTATTTGG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTAGTT-G
* * * *** * *
25087987 CCGATGGTGCCCGAGGCTCCCGCACATCCAATCACCGAGGTG
1 CCGATGGTGCCCAAGGCTCTCGCAGA-CCAAGGGCCTAGTTG
* * * * * * *
25088029 CTGATGGTGCCCGACGCTCCCGCATGACCAAAGACCTGGTTTG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTAG-TTG
* ** * ** * *
25088072 CCGATGCTATCCAAGGCTCCCGC-GCATCTGAGCGCCTAGGTG
1 CCGATGGTGCCCAAGGCTCTCGCAG-A-CCAAGGGCCTAGTTG
* * * *
25088114 CCGATGGTACCCGAGGCTCTCGTACGGCCAAGGGCCTAGGTTG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTA-GTTG
* * * ** * * ** * *
25088157 GCAATGGCGTTCGAGGCTC-CTGCACATCCAAGCACCAAGGTG
1 CCGATGGTGCCCAAGGCTCTC-GCAGA-CCAAGGGCCTAGTTG
* * * * *
25088199 TCGATGGTGCTCGAGGCTCCCACAAGACCAAGGGCCTAGTTTG
1 CCGATGGTGCCCAAGGCTCTCGC-AGACCAAGGGCCTAG-TTG
** * * * * * * *
25088242 CCGATGGTGTTCGACGCTCCCGCACATCCGAGCGCCCAAG-TG
1 CCGATGGTGCCCAAGGCTCTCGCAGA-CCAAG-GGCCTAGTTG
* * * * *
25088284 CCAATGGTGCCCGAGGCTCCCGGATGACCACGGGCCTAGTTTG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTAG-TTG
* * * * * * * * *
25088327 CTGATAGTGTCCAAGGCTCTCGTACATTCGAGCGCCTAGGTG
1 CCGATGGTGCCCAAGGCTCTCGCAGA-CCAAGGGCCTAGTTG
* *
25088369 CCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTA-GTTG
* * * ** * * *
25088412 CTGATGGTGTCCGAA-GCTCCCGC-GCATCTGAGCGCCCAGGTG
1 CCGATGGTG-CCCAAGGCTCTCGCAG-A-CCAAGGGCCTAGTTG
*** *
25088454 CCGATGGTGCTTGAGGCTCTCGCAAGACCAACGGCCTAGGTTG
1 CCGATGGTGCCCAAGGCTCTCGC-AGACCAAGGGCCTA-GTTG
* * * * * *
25088497 TCGATGGTGCCCGAGGCTCCCGCGCGACCAAGGGTCGAGTTTG
1 CCGATGGTGCCCAAGGCTCTCGC-AGACCAAGGGCCTAG-TTG
** * * * * * ** ** *
25088540 CCGATGGTGTTCGAGGTTCCCTCACATCTGAGCACCTAGGTG
1 CCGATGGTGCCCAAGGCTCTCGCAGA-CCAAGGGCCTAGTTG
**
25088582 CCGATGGTGCCTGAGGCTCTCGCATGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCAAGGCTCTCGCA-GACCAAGGGCCTA-GTTG
* * *
25088625 CCGATGGTGTCCGAGGCTCCCGCA
1 CCGATGGTGCCCAAGGCTCTCGCA
25088649 CATCCTAGCA
Statistics
Matches: 790, Mismatches: 283, Indels: 112
0.67 0.24 0.09
Matches are distributed among these distances:
40 1 0.00
41 27 0.03
42 340 0.43
43 411 0.52
44 11 0.01
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (41 bp):
CCGATGGTGCCCAAGGCTCTCGCAGACCAAGGGCCTAGTTG
Found at i:25087568 original size:42 final size:43
Alignment explanation
Indices: 25087502--25087616 Score: 126
Period size: 42 Copynumber: 2.7 Consensus size: 43
25087492 GCTCCCGCGA
* * *
25087502 GACCAAGGGCTTAGTTTGCCGATGGTGTCTAAGCCTCTCGCAC
1 GACCAAGGCCCTAGGTTGCCGATGGTGTCTAAGCCTCTCGCAC
* * * *
25087545 -ATCCGAGGCCCTAGG-TGCCGATGGTGCCCAAGGCTCTCGCAC
1 GA-CCAAGGCCCTAGGTTGCCGATGGTGTCTAAGCCTCTCGCAC
* *
25087587 GACCAAGGGCCTAGGTTGCCGACGGTGTCT
1 GACCAAGGCCCTAGGTTGCCGATGGTGTCT
25087617 GAGGTTACCG
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
42 36 0.63
43 21 0.37
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.21
Consensus pattern (43 bp):
GACCAAGGCCCTAGGTTGCCGATGGTGTCTAAGCCTCTCGCAC
Found at i:25087606 original size:85 final size:85
Alignment explanation
Indices: 25087453--25087867 Score: 311
Period size: 85 Copynumber: 4.9 Consensus size: 85
25087443 GGGTGTTACA
* * * * *
25087453 CCCGCACATCAGAGCACCGAGGTACCGATGGTGCCCAAGGCTCCCGCGA-GACCAAGGGCTTAGT
1 CCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCAAGGCTCCCGC-ACGACCAAGGGCCTAGG
*
25087517 TTGCCGATGGTGTCTAAGCCT
65 TTGCCGATGGTGTCTGAGCCT
* * *
25087538 CTCGCACATCCGAGGC-CCTAGGTGCCGATGGTGCCCAAGGCTCTCGCACGACCAAGGGCCTAGG
1 CCCGCACATCCGA-GCACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGG
* **
25087602 TTGCCGACGGTGTCTGAGGTT
65 TTGCCGATGGTGTCTGAGCCT
* * * * *** * *
25087623 ACCGCACATCCAAGCACCAAGGTGTCGATGGTACTTGAGGCTCCCGCACGACCAAAGGCCTAGGA
1 CCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGT
* *** * *
25087688 TGCTGACATTGTCCGAGGCT
66 TGCCGATGGTGTCTGAGCCT
** * * * * *
25087708 CCCGCACATCATAGCACCAAGGTTCCGTTGTTG-CCTAGGCTCCCGCACGACCAAGGGCCCT-GT
1 CCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGG-CCTAGG
*
25087771 TTGCCAATGGTGTCTGA-CGCT
65 TTGCCGATGGTGTCTGAGC-CT
* * ** * ** * * * *
25087792 CCCGCTCATCCAAGTGCCCAGGTGCCGATACTGCCCGAGGCTCTCACATC-ACCATGGGCCTAGG
1 CCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCA-CGACCAAGGGCCTAGG
* *
25087856 TTACCAATGGTG
65 TTGCCGATGGTG
25087868 CCCGAGGCTC
Statistics
Matches: 257, Mismatches: 65, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
84 62 0.24
85 192 0.75
86 3 0.01
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (85 bp):
CCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGT
TGCCGATGGTGTCTGAGCCT
Found at i:25087951 original size:85 final size:85
Alignment explanation
Indices: 25087862--25088519 Score: 611
Period size: 85 Copynumber: 7.7 Consensus size: 85
25087852 TAGGTTACCA
* * *
25087862 ATGGTGCCCGAGGCTCCCGAACGACCAAAGGCCTAGTTTGCCTATGGTGTCCGAGGCTCCTGCAC
1 ATGGTGCCCGAGGCTCCCGAACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * *
25087927 ATCCAAGCACCGAGGTCCCG
66 ATCCGAGCGCCCAGGTGCCG
* * * *
25087947 ATGGTGGCCGAGGCTCTCGCACGACCAAGGGCCTA-TTTGGCCGATGGTGCCCGAGGCTCCCGCA
1 ATGGTGCCCGAGGCTCCCGAACGACCAAGGGCCTAGTTT-GCCGATGGTGTCCGAGGCTCCCGCA
* * * * *
25088011 CATCCAATCACCGAGGTGCTG
65 CATCCGAGCGCCCAGGTGCCG
* * * * * * * * * *
25088032 ATGGTGCCCGACGCTCCCGCATGACCAAAGACCTGGTTTGCCGATGCTATCCAAGGCTCCCGCGC
1 ATGGTGCCCGAGGCTCCCGAACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
* *
25088097 ATCTGAGCGCCTAGGTGCCG
66 ATCCGAGCGCCCAGGTGCCG
* * * * * * * * * *
25088117 ATGGTACCCGAGGCTCTCGTACGGCCAAGGGCCTAGGTTGGCAATGGCGTTCGAGGCTCCTGCAC
1 ATGGTGCCCGAGGCTCCCGAACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * *
25088182 ATCCAAGCACCAAGGTGTCG
66 ATCCGAGCGCCCAGGTGCCG
* * * *
25088202 ATGGTGCTCGAGGCTCCC-ACAAGACCAAGGGCCTAGTTTGCCGATGGTGTTCGACGCTCCCGCA
1 ATGGTGCCCGAGGCTCCCGA-ACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCA
* *
25088266 CATCCGAGCGCCCAAGTGCCA
65 CATCCGAGCGCCCAGGTGCCG
* * * * * * * *
25088287 ATGGTGCCCGAGGCTCCCGGATGACCACGGGCCTAGTTTGCTGATAGTGTCCAAGGCTCTCGTAC
1 ATGGTGCCCGAGGCTCCCGAACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
* *
25088352 ATTCGAGCGCCTAGGTGCCG
66 ATCCGAGCGCCCAGGTGCCG
* * * * * * *
25088372 ATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCTGATGGTGTCCGAAGCTCCCGCGC
1 ATGGTGCCCGAGGCTCCCGAACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
*
25088437 ATCTGAGCGCCCAGGTGCCG
66 ATCCGAGCGCCCAGGTGCCG
** * * * * *
25088457 ATGGTGCTTGAGGCTCTCGCAA-GACCAACGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGC
1 ATGGTGCCCGAGGCTCCCG-AACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
25088520 GCGACCAAGG
Statistics
Matches: 460, Mismatches: 108, Indels: 10
0.80 0.19 0.02
Matches are distributed among these distances:
84 3 0.01
85 453 0.98
86 4 0.01
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (85 bp):
ATGGTGCCCGAGGCTCCCGAACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
ATCCGAGCGCCCAGGTGCCG
Found at i:25087958 original size:42 final size:42
Alignment explanation
Indices: 25087900--25088691 Score: 166
Period size: 42 Copynumber: 18.6 Consensus size: 42
25087890 AGGCCTAGTT
* *
25087900 TGCCTATGGTGTCCGAGGCTCCTGCACATCCAAGCACCGAGG
1 TGCCGATGGTGCCCGAGGCTCCTGCACATCCAAGCACCGAGG
* * ** * **
25087942 TCCCGATGGTGGCCGAGGCT-CTCGCACGA-CCAAGGGCCTATT
1 TGCCGATGGTGCCCGAGGCTCCT-GCAC-ATCCAAGCACCGAGG
* *
25087984 TGGCCGATGGTGCCCGAGGCTCCCGCACATCCAATCACCGAGG
1 T-GCCGATGGTGCCCGAGGCTCCTGCACATCCAAGCACCGAGG
* * * * *
25088027 TGCTGATGGTGCCCGACGCTCCCGCATGA-CCAAAG-ACCTG-GTT
1 TGCCGATGGTGCCCGAGGCTCCTGCA-CATCC-AAGCACC-GAG-G
* ** * * * ** * *
25088070 TGCCGATGCTATCCAAGGCTCCCGCGCATCTGAGCGCCTAGG
1 TGCCGATGGTGCCCGAGGCTCCTGCACATCCAAGCACCGAGG
* * ** ** *
25088112 TGCCGATGGTACCCGAGGCT-CTCGTACGGCCAAGGGCCTAGG
1 TGCCGATGGTGCCCGAGGCTCCT-GCACATCCAAGCACCGAGG
* * * ** *
25088154 TTGGCAATGGCGTTCGAGGCTCCTGCACATCCAAGCACCAAGG
1 -TGCCGATGGTGCCCGAGGCTCCTGCACATCCAAGCACCGAGG
* * * ** * *
25088197 TGTCGATGGTGCTCGAGGCTCC--CACAAGACCAAGGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCTGCAC-A-TCCAAGCACCGAG-G
** * * * * * *
25088240 TGCCGATGGTGTTCGACGCTCCCGCACATCCGAGCGCCCAAG
1 TGCCGATGGTGCCCGAGGCTCCTGCACATCCAAGCACCGAGG
* * * * * ** * *
25088282 TGCCAATGGTGCCCGAGGCTCCCGGATGA-CCACGGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCTGCA-CATCCAAGCACCGAG-G
* * * * * * * * *
25088325 TGCTGATAGTGTCCAAGGCT-CTCGTACATTCGAGCGCCTAGG
1 TGCCGATGGTGCCCGAGGCTCCT-GCACATCCAAGCACCGAGG
* *
25088367 TGCCGATGGTGCCCGAGGCT-CTCGCACGA-CCAAAG-GCCTAGG
1 TGCCGATGGTGCCCGAGGCTCCT-GCAC-ATCC-AAGCACCGAGG
* * * * * ** * *
25088409 TTGCTGATGGTGTCCGAAGCTCCCGCGCATCTGAGCGCCCAGG
1 -TGCCGATGGTGCCCGAGGCTCCTGCACATCCAAGCACCGAGG
** * * *
25088452 TGCCGATGGTGCTTGAGGCT-CTCGCA-AGACCAA-CGGCCTAGG
1 TGCCGATGGTGCCCGAGGCTCCT-GCACA-TCCAAGC-ACCGAGG
* * * *** *
25088494 TTGTCGATGGTGCCCGAGGCTCCCGCGCGA-CCAAGGGTCGAGTT
1 -TGCCGATGGTGCCCGAGGCTCCTGCAC-ATCCAAGCACCGAG-G
** * ** *
25088538 TGCCGATGGTGTTCGAGGTTCCCT-CACATCTGAGCACCTAGG
1 TGCCGATGGTGCCCGAGGCT-CCTGCACATCCAAGCACCGAGG
* * ** *
25088580 TGCCGATGGTGCCTGAGGCT-CT-CGCATGACCAAGGGCCTAGG
1 TGCCGATGGTGCCCGAGGCTCCTGCACAT--CCAAGCACCGAGG
* * * *
25088622 TTGCCGATGGTGTCCGAGGCTCCCGCACATCCTAGCACCAAGG
1 -TGCCGATGGTGCCCGAGGCTCCTGCACATCCAAGCACCGAGG
* * *
25088665 TGCCAATGGTACCCGAGGCTCCAGCAC
1 TGCCGATGGTGCCCGAGGCTCCTGCAC
25088692 GACCAAGGGC
Statistics
Matches: 534, Mismatches: 170, Indels: 92
0.67 0.21 0.12
Matches are distributed among these distances:
40 9 0.02
41 7 0.01
42 256 0.48
43 245 0.46
44 9 0.02
45 8 0.01
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (42 bp):
TGCCGATGGTGCCCGAGGCTCCTGCACATCCAAGCACCGAGG
Found at i:25088073 original size:170 final size:170
Alignment explanation
Indices: 25087862--25088519 Score: 699
Period size: 170 Copynumber: 3.9 Consensus size: 170
25087852 TAGGTTACCA
* * *
25087862 ATGGTGCCCGAGGCTCCCGAACGACCAAAGGCCTAGTTTGCCTATGGTGTCCGAGGCTCCTGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * * * *
25087927 ATCCAAGCACCGAGGTCCCGATGGTGGCCGAGGCTCTCGCACGACCAAGGGCCTA-TTTGGCCGA
66 ATCCGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT-GCCGA
* *
25087991 TGGTGCCCGAGGCTCCCGCACATCCAATCACCGAGGTGCTG
130 TGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCTG
* * * * * * * *
25088032 ATGGTGCCCGACGCTCCCGCATGACCAAAGACCTGGTTTGCCGATGCTATCCAAGGCTCCCGCGC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * * * * *
25088097 ATCTGAGCGCCTAGGTGCCGATGGTACCCGAGGCTCTCGTACGGCCAAGGGCCTAGGTTGGCAAT
66 ATCCGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
* ** *
25088162 GGCGTTCGAGGCTCCTGCACATCCAAGCACCAAGGTG-TCG
131 GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCT-G
* * * * * *
25088202 ATGGTGCTCGAGGCTCCCACAAGACCAAGGGCCTAGTTTGCCGATGGTGTTCGACGCTCCCGCAC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
* * * * * * * *
25088267 ATCCGAGCGCCCAAGTGCCAATGGTGCCCGAGGCTCCCGGATGACCACGGGCCTAGTTTGCTGAT
66 ATCCGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
* * * * * * * * * *
25088332 AGTGTCCAAGGCTCTCGTACATTCGAGCGCCTAGGTGCCG
131 GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCTG
* * * * *
25088372 ATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCTGATGGTGTCCGAAGCTCCCGCGC
1 ATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
* ** * * *
25088437 ATCTGAGCGCCCAGGTGCCGATGGTGCTTGAGGCTCTCGCAAGACCAACGGCCTAGGTTGTCGAT
66 ATCCGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
25088502 GGTGCCCGAGGCTCCCGC
131 GGTGCCCGAGGCTCCCGC
25088520 GCGACCAAGG
Statistics
Matches: 389, Mismatches: 96, Indels: 6
0.79 0.20 0.01
Matches are distributed among these distances:
169 1 0.00
170 386 0.99
171 2 0.01
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (170 bp):
ATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCAC
ATCCGAGCGCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGAT
GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCTG
Found at i:25088152 original size:255 final size:254
Alignment explanation
Indices: 25087862--25088519 Score: 793
Period size: 255 Copynumber: 2.6 Consensus size: 254
25087852 TAGGTTACCA
* *
25087862 ATGGTGCCCGAGGCTCCCGAACGACCAAAGGCCTAGTTTGCCTATGGTGTCCGAGGCTCCTGCAC
1 ATGGTGCCCGAGGCTCTCGAACGACCAAAGGCCTAGGTTG-CTATGGTGTCCGAGGCTCCTGCAC
* * *
25087927 ATCCAAGCACCGAGGTCCCGATGGTGGC-CGAGGCTCTCGCACGACCAAGGGCCTA-TTTGGCCG
65 ATCCAAGCACCAAGGTGCCGATGGT-GCTCGAGGCTCTCGCAAGACCAAGGGCCTAGTTT-GCCG
* * * **
25087990 ATGGTGCCCGAGGCTCCCGCACATCCAATCACCGAGGTGCTGATGGTGCCCGACGCTCCCGCATG
128 ATGGTGCCCGAGGCTCCCGCACATCCAAGCACCCAAGTGCCAATGGTGCCCGACGCTCCCGCATG
* *
25088055 ACCAAAGACCTGGTTTGCCGAT-GCTATCCAAGGCTCCCGCGCA-TCTGAGCGCCTAGGTGCCG
193 ACCAAAGACCTAGTTTGCCGATAG-TATCCAAGGCTCCCGCACATTC-GAGCGCCTAGGTGCCG
* * * * * * *
25088117 ATGGTACCCGAGGCTCTCGTACGGCCAAGGGCCTAGGTTGGCAATGGCGTTCGAGGCTCCTGCAC
1 ATGGTGCCCGAGGCTCTCGAACGACCAAAGGCCTAGGTT-GCTATGGTGTCCGAGGCTCCTGCAC
* * *
25088182 ATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCACAAGACCAAGGGCCTAGTTTGCCGAT
65 ATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCAAGACCAAGGGCCTAGTTTGCCGAT
** * * * * *
25088247 GGTGTTCGACGCTCCCGCACATCCGAGCGCCCAAGTGCCAATGGTGCCCGAGGCTCCCGGATGAC
130 GGTGCCCGAGGCTCCCGCACATCCAAGCACCCAAGTGCCAATGGTGCCCGACGCTCCCGCATGAC
** * * * * *
25088312 CACGGGCCTAGTTTGCTGATAGTGTCCAAGGCTCTCGTACATTCGAGCGCCTAGGTGCCG
195 CAAAGACCTAGTTTGCCGATAGTATCCAAGGCTCCCGCACATTCGAGCGCCTAGGTGCCG
* * * *
25088372 ATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCTGATGGTGTCCGAAGCTCCCGCGC
1 ATGGTGCCCGAGGCTCTCGAACGACCAAAGGCCTAGGTTGCT-ATGGTGTCCGAGGCTCCTGCAC
** * * * * * *
25088437 ATCTGAGCGCCCAGGTGCCGATGGTGCTTGAGGCTCTCGCAAGACCAACGGCCTAGGTTGTCGAT
65 ATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCAAGACCAAGGGCCTAGTTTGCCGAT
25088502 GGTGCCCGAGGCTCCCGC
130 GGTGCCCGAGGCTCCCGC
25088520 GCGACCAAGG
Statistics
Matches: 337, Mismatches: 60, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
254 4 0.01
255 326 0.97
256 7 0.02
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (254 bp):
ATGGTGCCCGAGGCTCTCGAACGACCAAAGGCCTAGGTTGCTATGGTGTCCGAGGCTCCTGCACA
TCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCAAGACCAAGGGCCTAGTTTGCCGATG
GTGCCCGAGGCTCCCGCACATCCAAGCACCCAAGTGCCAATGGTGCCCGACGCTCCCGCATGACC
AAAGACCTAGTTTGCCGATAGTATCCAAGGCTCCCGCACATTCGAGCGCCTAGGTGCCG
Found at i:25088420 original size:213 final size:213
Alignment explanation
Indices: 25087659--25088674 Score: 503
Period size: 213 Copynumber: 4.8 Consensus size: 213
25087649 GATGGTACTT
* * * ** * * * * *
25087659 GAGGCTCCCGCACGACCAAAGGCCTAGGATGCTGACATTGTCCGAGGCTCCCGCACATCAT-AGC
1 GAGGCTCCCGCGCGACCAAGGGCCGAGTTTGCCGATAGTGTCCAAGGCTCCCTCACATC-TGAGC
* * * * * * * * * *
25087723 ACCAAGGTTCCGTTGTTG-CCTAGGCTCCCGCACGACCAAGGGCCCT-GTTTGCCAATGGTGTCT
65 ACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGG-CCTAGGTTGCCGATGGTGTCC
* * * * ** ** * * * ** **
25087786 GACGCTCCCGCTCATCCAAGTGCCCAGGTGCCGATACTGCCCGAGGCTCTCACATCACCATGGGC
129 GAGGCTCCCACGCATCCAAGCGCCCAGGTGCCGATGGTGCTTGACGCTCCCGCAAGACCAACGGC
* * *
25087851 CTAGGTTACCAATGGTGCCC
194 CCAAGTTGCCAATGGTGCCC
** * * * * * **
25087871 GAGGCTCCCGAACGACCAAAGGCCTAGTTTGCCTATGGTGTCCGAGGCT-CCTGCACATCCAAGC
1 GAGGCTCCCGCGCGACCAAGGGCCGAGTTTGCCGATAGTGTCCAAGGCTCCCT-CACATCTGAGC
* * * * * *
25087935 ACCGAGGTCCCGATGGTGGCCGAGGCTCTCGCACGACCAAGGGCCTA-TTTGGCCGATGGTGCCC
65 ACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTT-GCCGATGGTGTCC
* * * * * * ** * * *
25087999 GAGGCTCCCGCACATCCAATCACCGAGGTGCTGATGGTGCCCGACGCTCCCGCATGACCAA-AGA
129 GAGGCTCCCACGCATCCAAGCGCCCAGGTGCCGATGGTGCTTGACGCTCCCGCAAGACCAACGGC
** * * **
25088063 CCTGGTTTGCCGATGCTATCC
194 CCAAG-TTGCCAATGGTGCCC
* ** * * * * ** * * ** **
25088084 AAGGCTCCCGCGC-ATCTGAGCGCCTAG-GTGCCGATGGTACCCGAGGCTCTCGT-ACGGCCAAG
1 GAGGCTCCCGCGCGA-CCAAGGGCCGAGTTTGCCGATAGTGTCCAAGGCTC-CCTCACATCTGAG
** * * * ** * * *
25088146 GGCCTAGGTTGGCAATGGCGTTCGAGGCTC-CTGCAC-ATCC-AAGCACCAAGG-TGTCGATGGT
64 CACCTAGG-TGCCGATGGTGCCCGAGGCTCTC-GCACGA-CCAAAG-GCCTAGGTTGCCGATGGT
* * *
25088207 G-CTCGAGGCTCCCACAAG-A-CCAAGGGCCTAGTTTGCCGATGGTG-TTCGACGCTCCCGCACA
125 GTC-CGAGGCTCCCAC--GCATCCAAGCGCCCAG-GTGCCGATGGTGCTT-GACGCTCCCGCA-A
* *
25088268 -TCCGA-GCGCCCAAG-TGCCAATGGTGCCC
184 GACCAACG-GCCCAAGTTGCCAATGGTGCCC
* * * * *
25088296 GAGGCTCCCG-GATGACCACGGGCCTAGTTTGCTGATAGTGTCCAAGGCTCTCGT-ACAT-TCGA
1 GAGGCTCCCGCG-CGACCAAGGGCCGAGTTTGCCGATAGTGTCCAAGGCTC-CCTCACATCT-GA
* *
25088358 GCGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCTGATGGTGTC
63 GCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTC
* * ** * *
25088423 CGAAGCTCCCGCGCATCTGAGCGCCCAGGTGCCGATGGTGCTTGAGGCTCTCGCAAGACCAACGG
128 CGAGGCTCCCACGCATCCAAGCGCCCAGGTGCCGATGGTGCTTGACGCTCCCGCAAGACCAACGG
* * * *
25088488 CCTAGGTTGTCGATGGTGCCC
193 CCCAAGTTGCCAATGGTGCCC
* * * * *
25088509 GAGGCTCCCGCGCGACCAAGGGTCGAGTTTGCCGATGGTGTTCGAGGTTCCCTCACATCTGAGCA
1 GAGGCTCCCGCGCGACCAAGGGCCGAGTTTGCCGATAGTGTCCAAGGCTCCCTCACATCTGAGCA
* * *
25088574 CCTAGGTGCCGATGGTGCCTGAGGCTCTCGCATGACCAAGGGCCTAGGTTGCCGATGGTGTCCGA
66 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTCCGA
* * * * * *
25088639 GGCTCCCGCACATCCTAGCACCAAGGTGCCAATGGT
131 GGCTCCCACGCATCCAAGCGCCCAGGTGCCGATGGT
25088675 ACCCGAGGCT
Statistics
Matches: 611, Mismatches: 154, Indels: 77
0.73 0.18 0.09
Matches are distributed among these distances:
211 6 0.01
212 222 0.36
213 374 0.61
214 9 0.01
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (213 bp):
GAGGCTCCCGCGCGACCAAGGGCCGAGTTTGCCGATAGTGTCCAAGGCTCCCTCACATCTGAGCA
CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTCCGA
GGCTCCCACGCATCCAAGCGCCCAGGTGCCGATGGTGCTTGACGCTCCCGCAAGACCAACGGCCC
AAGTTGCCAATGGTGCCC
Found at i:25088515 original size:128 final size:128
Alignment explanation
Indices: 25087744--25088649 Score: 479
Period size: 128 Copynumber: 7.1 Consensus size: 128
25087734 GTTGTTGCCT
* ** * * * * * ** **
25087744 AGGCTCCCGCACGACCAAGGGCCCTGTTTGCCAATGGTGTCTGACGCTCCCGCTCATCCAAGTGC
1 AGGCTCCCGCACGACCAAAGGCCGAGGTTGCCGATGGTGTCCGAAGCTCCCGCACATCTGAGCAC
** * * ** ** * *
25087809 CCAGGTGCCGATACTGCCCGAGGCTCTCACATCACCATGGGCCTAGGTTACCAATGGTGCCCG
66 CCAGGTGCCGATGGTGCCTGAGGCTCTCGCAAGACCAACGGCCTAGGTTGCCGATGGTGCCCG
* * * * * * **
25087872 AGGCTCCCGAACGACCAAAGGCCTAGTTTGCCTATGGTGTCCGAGGCTCCTGCACATCCAAGCAC
1 AGGCTCCCGCACGACCAAAGGCCGAGGTTGCCGATGGTGTCCGAAGCTCCCGCACATCTGAGCAC
* * * * *
25087937 CGAGGTCCCGATGGTGGCC-GAGGCTCTCGCACGACCAAGGGCCTA-TTTGGCCGATGGTGCCCG
66 CCAGGTGCCGATGGT-GCCTGAGGCTCTCGCAAGACCAACGGCCTAGGTT-GCCGATGGTGCCCG
*** * * * * * **
25088000 AGGCTCCCGCAC-ATCCAATCACCGAGG-TGCTGATGGTGCCCGACGCTCCCGCATGACCAAAG-
1 AGGCTCCCGCACGA-CCAAAGGCCGAGGTTGCCGATGGTGTCCGAAGCTCCCGCA-CATCTGAGC
* * * * * **
25088062 A-CCTGGTTTGCCGATGCTATCC-AAGGCTCCCGC--GCATCTGA-GCGCCTAGG-TGCCGATGG
64 ACCCAGG--TGCCGATGGT-GCCTGAGGCTCTCGCAAG-A-CCAACG-GCCTAGGTTGCCGATGG
*
25088121 TACCCG
123 TGCCCG
* * * * * * * * * * * **
25088127 AGGCTCTCGTACGGCCAAGGGCCTAGGTTGGCAATGGCGTTCGAGGCTCCTGCACATCCAAGCAC
1 AGGCTCCCGCACGACCAAAGGCCGAGGTTGCCGATGGTGTCCGAAGCTCCCGCACATCTGAGCAC
* * * * * * **
25088192 CAAGGTGTCGATGGTG-CTCGAGGCTCCCACAAGACCAAGGGCCTAGTTTGCCGATGGTGTTCG
66 CCAGGTGCCGATGGTGCCT-GAGGCTCTCGCAAGACCAACGGCCTAGGTTGCCGATGGTGCCCG
* * * * * * * * *
25088255 ACGCTCCCGCAC-ATCC-GAGCGCCCAAG-TGCCAATGGTGCCCGAGGCTCCCG--GA--TGACC
1 AGGCTCCCGCACGA-CCAAAG-GCCGAGGTTGCCGATGGTGTCCGAAGCTCCCGCACATCTGAGC
* * * * * ** * *
25088313 ACGGGCCTAGTTTGCTGATAGTGTCC-AAGGCTCTCGTACATTCGAGC-GCCTAGG-TGCCGATG
64 AC---CC-AG-GTGCCGATGGTG-CCTGAGGCTCTCGCA-AGACCAACGGCCTAGGTTGCCGATG
25088375 GTGCCCG
122 GTGCCCG
* * * * *
25088382 AGGCTCTCGCACGACCAAAGGCCTAGGTTGCTGATGGTGTCCGAAGCTCCCGCGCATCTGAGCGC
1 AGGCTCCCGCACGACCAAAGGCCGAGGTTGCCGATGGTGTCCGAAGCTCCCGCACATCTGAGCAC
* *
25088447 CCAGGTGCCGATGGTGCTTGAGGCTCTCGCAAGACCAACGGCCTAGGTTGTCGATGGTGCCCG
66 CCAGGTGCCGATGGTGCCTGAGGCTCTCGCAAGACCAACGGCCTAGGTTGCCGATGGTGCCCG
* * * * * * * *
25088510 AGGCTCCCGCGCGACCAAGGGTCGAGTTTGCCGATGGTGTTCGAGGTTCCCTCACATCTGAGCAC
1 AGGCTCCCGCACGACCAAAGGCCGAGGTTGCCGATGGTGTCCGAAGCTCCCGCACATCTGAGCAC
* * * *
25088575 CTAGGTGCCGATGGTGCCTGAGGCTCTCGCATGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
66 CCAGGTGCCGATGGTGCCTGAGGCTCTCGCAAGACCAACGGCCTAGGTTGCCGATGGTGCCCG
25088638 AGGCTCCCGCAC
1 AGGCTCCCGCAC
25088650 ATCCTAGCAC
Statistics
Matches: 582, Mismatches: 156, Indels: 80
0.71 0.19 0.10
Matches are distributed among these distances:
123 4 0.01
125 2 0.00
126 10 0.02
127 167 0.29
128 380 0.65
129 12 0.02
130 2 0.00
132 5 0.01
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (128 bp):
AGGCTCCCGCACGACCAAAGGCCGAGGTTGCCGATGGTGTCCGAAGCTCCCGCACATCTGAGCAC
CCAGGTGCCGATGGTGCCTGAGGCTCTCGCAAGACCAACGGCCTAGGTTGCCGATGGTGCCCG
Found at i:25088587 original size:85 final size:85
Alignment explanation
Indices: 25088488--25088702 Score: 270
Period size: 85 Copynumber: 2.5 Consensus size: 85
25088478 AGACCAACGG
* * * * *
25088488 CCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCGCGACCAAGGGTCGAGTTTGCCGATGGTGTTCG
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTCCG
* *
25088553 AGGTTCCCTCACAT-CTGAGCA
65 AGGCTCCCGCACATCCT-AGCA
* * * *
25088574 CCTAGGTGCCGATGGTGCCTGAGGCTCTCGCATGACCAAGGGCCTAGGTTGCCGATGGTGTCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTCCGA
25088639 GGCTCCCGCACATCCTAGCA
66 GGCTCCCGCACATCCTAGCA
* * * *
25088659 CCAAGGTGCCAATGGTACCCGAGGCTCCAGCACGACCAAGGGCC
1 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
25088703 TATGCTGGCG
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
85 102 0.93
86 8 0.07
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (85 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTCCGA
GGCTCCCGCACATCCTAGCA
Found at i:25088685 original size:213 final size:213
Alignment explanation
Indices: 25088287--25088704 Score: 531
Period size: 213 Copynumber: 2.0 Consensus size: 213
25088277 CCAAGTGCCA
* * * * *
25088287 ATGGTGCCCGAGGCTCCCGGATGACCACGGGCCTAGTTTGCTGATAGTGTCCAAGGCTCTCGTAC
1 ATGGTGCCCGAGGCTCCCGGACGACCAAGGGCCGAGTTTGCCGATAGTGTCCAAGGCTCTCCTAC
* *
25088352 ATTCGAGCGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCTGAT
66 ATTCGAGCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCGAT
* * * * * **
25088417 GGTGTCCGAAGCTCCCGCGCATCTGAGCGCCCAGGTGCCGATGGTGCTTGAGGCTCTC-GCAAGA
131 GGTGTCCGAAGCTCCCGCACATCTGAGCACCAAGGTGCCAATGGTACCCGAGGCTC-CAGCAAGA
25088481 CCAACGGCCTAGGTTGTCG
195 CCAACGGCCTAGGTTGTCG
* * * * *
25088500 ATGGTGCCCGAGGCTCCCGCG-CGACCAAGGGTCGAGTTTGCCGATGGTGTTCGAGGTTC-CCTC
1 ATGGTGCCCGAGGCTCCCG-GACGACCAAGGGCCGAGTTTGCCGATAGTGTCCAAGGCTCTCCT-
* * *
25088563 ACA-TCTGAGCACCTAGGTGCCGATGGTGCCTGAGGCTCTCGCATGACCAAGGGCCTAGGTTGCC
64 ACATTC-GAGCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCC
*
25088627 GATGGTGTCCGAGGCTCCCGCACATCCT-AGCACCAAGGTGCCAATGGTACCCGAGGCTCCAGCA
128 GATGGTGTCCGAAGCTCCCGCACAT-CTGAGCACCAAGGTGCCAATGGTACCCGAGGCTCCAGCA
* *
25088691 CGACCAAGGGCCTA
192 AGACCAACGGCCTA
25088705 TGCTGGCGGA
Statistics
Matches: 175, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
212 5 0.03
213 167 0.95
214 3 0.02
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.20
Consensus pattern (213 bp):
ATGGTGCCCGAGGCTCCCGGACGACCAAGGGCCGAGTTTGCCGATAGTGTCCAAGGCTCTCCTAC
ATTCGAGCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCGAT
GGTGTCCGAAGCTCCCGCACATCTGAGCACCAAGGTGCCAATGGTACCCGAGGCTCCAGCAAGAC
CAACGGCCTAGGTTGTCG
Found at i:25090302 original size:43 final size:42
Alignment explanation
Indices: 25090246--25090541 Score: 263
Period size: 43 Copynumber: 6.9 Consensus size: 42
25090236 ACTTTTGCTT
*
25090246 TGGTGCTCGAGGCTCCTGCACATCCAAGCACCAAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* * * **
25090289 TGGTG-TCAAAGGCTCCCGCATATTCGATCCACCAAGGTGCCGA
1 TGGTGCTC-GAGGCTCCCGCACA-TCCAAGCACCAAGGTGCCGA
* * * * * * *
25090332 TGGTGCTCGAGGCTCTCACACATACAAGTACAAAGGTACTGA
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * * * * *
25090374 TTGTGCTCGAGCCTCTCGCACATTCAAGCACCAAGGTTACCGT
1 TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGA
* *
25090417 TGGTGGC-CGAGGCTCCAGCACATCCGAGCACCAAGGTGCCGA
1 TGGT-GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
* * * * *
25090459 TGGTGCTGGAGGCTCCCCCTCATCTGAGGCACCAAGGTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATC-CAAGCACCAAGGTGCCGA
* *
25090502 TGGTGTTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGC
1 TGGTGCTCGAGGCTCCCGCACATCCAAG-CACCAAGGTGC
25090542 TGGAGGCTCT
Statistics
Matches: 197, Mismatches: 48, Indels: 16
0.75 0.18 0.06
Matches are distributed among these distances:
41 2 0.01
42 66 0.34
43 114 0.58
44 15 0.08
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGA
Found at i:25090465 original size:85 final size:84
Alignment explanation
Indices: 25090246--25090541 Score: 283
Period size: 85 Copynumber: 3.5 Consensus size: 84
25090236 ACTTTTGCTT
* * *
25090246 TGGTGCTCGAGGCTCCTGCACATCCAAGCACCAAGGTTGCCGATGGTG-TCAAAGGCTCCCGCAT
1 TGGTGCTCGAGGCTCCAGCACATCCAAGCACCAAGG-TGCCGATGGTGCTC-GAGGCTCCCGCAC
**
25090310 ATTCGATCCACCAAGGTGCCGA
64 ATTC-AAGCACCAAGGTGCCGA
* * * * * * * *
25090332 TGGTGCTCGAGGCTCTCA-CACATACAAGTACAAAGGTACTGATTGTGCTCGAGCCTCTCGCACA
1 TGGTGCTCGAGGCTC-CAGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACA
* *
25090396 TTCAAGCACCAAGGTTACCGT
65 TTCAAGCACCAAGG-TGCCGA
* * * *
25090417 TGGTGGC-CGAGGCTCCAGCACATCCGAGCACCAAGGTGCCGATGGTGCTGGAGGCTCCCCCTCA
1 TGGT-GCTCGAGGCTCCAGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACA
* *
25090481 TCTGAGGCACCAAGGTGCCGA
65 T-TCAAGCACCAAGGTGCCGA
* * *
25090502 TGGTGTTCGAGGCTCCCGCACATCCGAGCCACCAAGGTGC
1 TGGTGCTCGAGGCTCCAGCACATCCAAG-CACCAAGGTGC
25090542 TGGAGGCTCT
Statistics
Matches: 169, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
84 12 0.07
85 100 0.59
86 56 0.33
87 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (84 bp):
TGGTGCTCGAGGCTCCAGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAT
TCAAGCACCAAGGTGCCGA
Found at i:25090496 original size:128 final size:127
Alignment explanation
Indices: 25090246--25090539 Score: 313
Period size: 128 Copynumber: 2.3 Consensus size: 127
25090236 ACTTTTGCTT
* * * *
25090246 TGGTGCTCGAGGCTCCTGCACATCCAAGCACCAAGGTTGCCGATGGTGTCAAAGGCTCCCGCATA
1 TGGTGCTCGAGGCTCC-GCACATCCAAGCACCAAGGTTACCGATGGTGGCAAAGGCTCCAGCACA
* * * *
25090311 TTCGATCCACCAAGGTGCCGATGGTGCTCGAGGCTCTCACACATACAAGTACAAAGGTACTGA
65 TCCGATCCACCAAGGTGCCGATGGTGCTCGAGGCTCCCACACATACAAGCACAAAGGTACCGA
* * * * **
25090374 TTGTGCTCGAGCCTCTCGCACATTCAAGCACCAAGGTTACCGTTGGTGGCCGAGGCTCCAGCACA
1 TGGTGCTCGAGGCTC-CGCACATCCAAGCACCAAGGTTACCGATGGTGGCAAAGGCTCCAGCACA
* * * * * * *
25090439 TCCGA-GCACCAAGGTGCCGATGGTGCTGGAGGCTCCCCCTCAT-CTGAGGCACCAAGGTGCCGA
65 TCCGATCCACCAAGGTGCCGATGGTGCTCGAGGCTCCCACACATAC--AAGCACAAAGGTACCGA
* *
25090502 TGGTGTTCGAGGCTCCCGCACATCCGAGCCACCAAGGT
1 TGGTGCTCGAGGCT-CCGCACATCCAAG-CACCAAGGT
25090540 GCTGGAGGCT
Statistics
Matches: 135, Mismatches: 26, Indels: 9
0.79 0.15 0.05
Matches are distributed among these distances:
126 1 0.01
127 33 0.24
128 90 0.67
129 11 0.08
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (127 bp):
TGGTGCTCGAGGCTCCGCACATCCAAGCACCAAGGTTACCGATGGTGGCAAAGGCTCCAGCACAT
CCGATCCACCAAGGTGCCGATGGTGCTCGAGGCTCCCACACATACAAGCACAAAGGTACCGA
Found at i:25098137 original size:85 final size:85
Alignment explanation
Indices: 25097889--25098429 Score: 392
Period size: 85 Copynumber: 6.3 Consensus size: 85
25097879 ATGGTGTTCA
* * * * * * *
25097889 AGGCTCCGGCACATCCAAGCACCAAGGTTGCGGATAGTGTCCGAGGCTCCCGCACGTCC-GAGCC
1 AGGCTCCCGCACATCCGAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAG--
* * * * *
25097953 ACCAAGGTGCCCG-TGCTG-CTCG
63 GCCTAGTTTCCCGATGTTGTC-CG
** * * * * *
25097975 AGGCTCCCGCACATTTGAGCCACCAAGGTGCCGATAGTGCCCGAGGCTCTCACACGACGAAGGGC
1 AGGCTCCCGCACATCCGAG-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGC
* *
25098040 CTA-TTCTACCGATGTTGCCCG
65 CTAGTT-TCCCGATGTTGTCCG
* * * * * ** *
25098061 AGGCTCCTGCACATCTGAGTACCGAGGTGCCGATGGTGCCCAAGGCTCCCGCGTGACCAAAGGCT
1 AGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCC
*
25098126 TAGTTTCCCGATGGTGTCCG
66 TAGTTTCCCGATGTTGTCCG
* * * * *
25098146 AGCCTCCCGGACATCCGAGCCCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACC-AAGAGC
1 AGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAG-GC
** * * **
25098210 CTAGGATGCCAACATTGTCCG
65 CTAGTTTCCCGATGTTGTCCG
* *
25098231 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
1 AGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCC
* ** * *
25098296 TAGTTTGCTAATGGTGTCTG
66 TAGTTTCCCGATGTTGTCCG
* * * ** * * *
25098316 ACGCTCCCGTACATTCGAGTGCCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGACC-AAGGCC
1 AGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGG-C
* ** * **
25098380 CTAGGTTGTCGATGCTACCCG
65 CTAGTTTCCCGATGTTGTCCG
* *
25098401 AGGTTCCCGCACATCCAAGCACCAAGGTG
1 AGGCTCCCGCACATCCGAGCACCAAGGTG
25098430 TCAATGGGTA
Statistics
Matches: 352, Mismatches: 94, Indels: 19
0.76 0.20 0.04
Matches are distributed among these distances:
84 7 0.02
85 268 0.76
86 67 0.19
87 10 0.03
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.18
Consensus pattern (85 bp):
AGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCC
TAGTTTCCCGATGTTGTCCG
Found at i:25098189 original size:42 final size:42
Alignment explanation
Indices: 25097851--25098429 Score: 267
Period size: 43 Copynumber: 13.6 Consensus size: 42
25097841 TTTTCTTTAG
* * ** *
25097851 CCCGCACATCCCAAGCACCGAGGTGCCAATGGTGTTCAAGGCT
1 CCCGCACAT-CCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
* * * * *
25097894 CCGGCACATCCAAGCACCAAGGTTGCGGATAGTGTCCGAGGCT
1 CCCGCACATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCT
* * * * *
25097937 CCCGCACGTCCGAGCCACCAAGGTGCCCG-TGCTGCTCGAGGCT
1 CCCGCACATCCAAG-CACCTAGGTG-CCGATGGTGCCCGAGGCT
*** * *
25097980 CCCGCACATTTGAGCCACCAAGGTGCCGATAGTGCCCGAGGCT
1 CCCGCACATCCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCT
* * * ** ** * *
25098023 CTCACACGA-CGAAGGGCCTATTCTACCGATGTTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCTA-GGTGCCGATGGTGCCCGAGGCT
* ** * * *
25098066 CCTGCACATCTGAGTACCGAGGTGCCGATGGTGCCCAAGGCT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
** * * * * * *
25098108 CCCGCGTGA-CCAAAG-GCTTAGTTTCCCGATGGTGTCCGAGCCT
1 CCCGC-ACATCC-AAGCACCTAG-GTGCCGATGGTGCCCGAGGCT
* * *
25098151 CCCGGACATCCGAGCCCCTAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
* * *** *
25098193 CTCGCACGA-CCAAG-AGCCTAGGATGCCAACATTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCA-CCTAGG-TGCCGATGGTGCCCGAGGCT
*
25098236 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
** * ** * * *
25098278 CCCGCACGA-CCAAGGGCCTAGTTTGCTAATGGTGTCTGACGCT
1 CCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCT
* * * ** * *
25098321 CCCGTACATTCGAGTGCCCAGGTACCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
* * * * *
25098363 CTCGCACGA-CCAAGGC-CCTAGGTTGTCGATGCTACCCGAGGTT
1 CCCGCAC-ATCCAA-GCACCTAGG-TGCCGATGGTGCCCGAGGCT
*
25098406 CCCGCACATCCAAGCACCAAGGTG
1 CCCGCACATCCAAGCACCTAGGTG
25098430 TCAATGGGTA
Statistics
Matches: 391, Mismatches: 120, Indels: 51
0.70 0.21 0.09
Matches are distributed among these distances:
42 143 0.37
43 236 0.60
44 12 0.03
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.17
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCT
Found at i:25098192 original size:170 final size:169
Alignment explanation
Indices: 25097973--25098429 Score: 475
Period size: 170 Copynumber: 2.7 Consensus size: 169
25097963 CCGTGCTGCT
* * * * *
25097973 CGAGGCTCCCGCACATTTGAGCCACCAAGGTGCCGATAGTGCCCGAGGCTCTCACACGACGAAGG
1 CGAGCCTCCCGCACATTCGAGCC-CC-AGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
*** * ** * ** * *
25098038 GCCTATTCTACCGATGTTGCCCGAGGCTCCTGCACATCTGAGTACCGAGGTGCCGATGGTGCCCA
64 GCCTAGGATACCAACATTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCA
** * *
25098103 AGGCTCCCGCGTGACCAAAGGCTTAGTTTCCCGATGGTGTC
129 AGGCTCCCGCACGACCAAAGGCCTAGTTTCCCAATGGTGTC
* * *
25098144 CGAGCCTCCCGGACATCCGAGCCCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGAG
1 CGAGCCTCCCGCACATTCGAGCCCC-AGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
* * *
25098209 CCTAGGATGCCAACATTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
65 CCTAGGATACCAACATTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCAA
* * *
25098274 GGCTCCCGCACGACCAAGGGCCTAGTTTGCTAATGGTGTC
130 GGCTCCCGCACGACCAAAGGCCTAGTTTCCCAATGGTGTC
* * * *
25098314 TGA-CGCTCCCGTACATTCGAGTGCCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
1 CGAGC-CTCCCGCACATTCGAG-CCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
* * ** * *** * *
25098378 CCCTAGGTTGTCGATGCTACCCGAGGTTCCCGCACATCCAAGCACCAAGGTG
64 GCCTAGGATACCAACATTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTG
25098430 TCAATGGGTA
Statistics
Matches: 238, Mismatches: 46, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
169 1 0.00
170 215 0.90
171 22 0.09
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (169 bp):
CGAGCCTCCCGCACATTCGAGCCCCAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
CTAGGATACCAACATTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCAAG
GCTCCCGCACGACCAAAGGCCTAGTTTCCCAATGGTGTC
Found at i:25103638 original size:43 final size:42
Alignment explanation
Indices: 25103569--25103726 Score: 196
Period size: 43 Copynumber: 3.7 Consensus size: 42
25103559 CCCATTCCAG
*
25103569 GCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCTAA
1 GCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCTGA
* *
25103611 GCACTAAGGTTGCCGATGGTG-TCCGAGGCTCCCGCACATCCGA
1 GCACCAAGG-TGCCGATGGTGCT-CGAGGCTCCCGCACATCTGA
* *
25103654 GCCACCAAGGTGCCCATGCTGCTCGAGGCTCCCGCACAT-TCGA
1 G-CACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCT-GA
*
25103697 CCACCAAGGTGCCGATGGTGC-CTGAGGCTC
1 GCACCAAGGTGCCGATGGTGCTC-GAGGCTC
25103727 TCAAAAAATG
Statistics
Matches: 100, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 34 0.34
43 57 0.57
44 8 0.08
ACGTcount: A:0.19, C:0.35, G:0.29, T:0.17
Consensus pattern (42 bp):
GCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCTGA
Found at i:25103784 original size:43 final size:42
Alignment explanation
Indices: 25103737--25104640 Score: 304
Period size: 43 Copynumber: 21.2 Consensus size: 42
25103727 TCAAAAAATG
*
25103737 AAGGGCCTATTCTACCGATGGTGCCCGAGGCTTCCGCACGACC
1 AAGGGCCTATT-TGCCGATGGTGCCCGAGGCTTCCGCACGACC
* * * * * * *
25103780 AAGGGCTTAGTTTGCCGATTGTGTCTGAGCCTTCTGCAC-ATCG
1 AAGGGCCTA-TTTGCCGATGGTGCCCGAGGCTTCCGCACGA-CC
** **
25103823 AAGCCCCTAGGTGCCGATGGTGCCCGAGGC-TCTCGCACGACC
1 AAGGGCCTATTTGCCGATGGTGCCCGAGGCTTC-CGCACGACC
* * * *
25103865 AAGGGCCTAGGTTGCCGATGGTGTCTGAAG-TTCTCGCAC-ATCC
1 AAGGGCCTA-TTTGCCGATGGTGCCCGAGGCTTC-CGCACGA-CC
** * ** * * * ** *
25103908 AAGCACCAAGGTGTCGATGGTTCTCGAGGCTTCTACATGACC
1 AAGGGCCTATTTGCCGATGGTGCCCGAGGCTTCCGCACGACC
** * *** * *
25103950 AAGGGCCTAAGATGCTGACATTGGCCGAGGC-TCTCGCAC-ATC
1 AAGGGCCT-ATTTGCCGATGGTGCCCGAGGCTTC-CGCACGACC
** * ** *
25103992 ATAGCACCGAGGTGCCGATGGTGCCTGAGGC-TCCTGCACGACC
1 A-AGGGCCTATTTGCCGATGGTGCCCGAGGCTTCC-GCACGACC
* * * * *
25104035 AAGGGCCTAGGTAGCCGATGGTGCCCGAGTCTCCCGCAAGACC
1 AAGGGCCTA-TTTGCCGATGGTGCCCGAGGCTTCCGCACGACC
* * * * *
25104078 AAGGGCCGAGTTTGTCGATGGTGTCCGACGCTCCCGCAC-ATCC
1 AAGGGCCTA-TTTGCCGATGGTGCCCGAGGCTTCCGCACGA-CC
* ** * * *
25104121 --GAGCACTCAGGTGCCGATCGTGTCCGAGG-GTCCTGCACGACC
1 AAGGGC-CT-ATTTGCCGATGGTGCCCGAGGCTTCC-GCACGACC
* * * * *
25104163 ACGGGCCTGGTTTGTCGATGGTGTCCGAGGC-TCTCGCAC-ATTC
1 AAGGGCCT-ATTTGCCGATGGTGCCCGAGGCTTC-CGCACGA-CC
* * ** * *
25104206 GAGCGCCTAGGTGCTGATGGTGCCCGAGGCTTTCGCACGACC
1 AAGGGCCTATTTGCCGATGGTGCCCGAGGCTTCCGCACGACC
* *** * *
25104248 AAGGGCCTAGGTTGCCGATGGTGTTTGAGGCTCCCGCAC-ATTC
1 AAGGGCCTA-TTTGCCGATGGTGCCCGAGGCTTCCGCACGA-CC
* * * ** * *
25104291 GAGTGCCCAGGTGCC-AGTGGTGCCCGAAGC-TCTCGCAGGACC
1 AAGGGCCTATTTGCCGA-TGGTGCCCGAGGCTTC-CGCACGACC
* *
25104333 AAGGGCCTAGGTTGCCGATGGTGCCCGAGGC-TCGTGCACGACC
1 AAGGGCCTA-TTTGCCGATGGTGCCCGAGGCTTC-CGCACGACC
* ** * *
25104376 AAGGGCCTAGTTTGGCGATGGTGTGCGAGACTTCCGCAC-ATTC
1 AAGGGCCTA-TTTGCCGATGGTGCCCGAGGCTTCCGCACGA-CC
* ** **
25104419 GAGCACCTAGGTGCCGATGGTGCCCGAGGC-TCTCGCACGACC
1 AAGGGCCTATTTGCCGATGGTGCCCGAGGCTTC-CGCACGACC
* * *
25104461 AAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTAC-ATCC
1 AAGGGCCTA-TTTGCCGATGGTGCCCGAGGCTTCCGCACGA-CC
* ** * ** * *
25104504 TAGCACCAAGATGCCTATGGTGCCCGAGGC-TCTCGTACGACC
1 AAGGGCCTATTTGCCGATGGTGCCCGAGGCTTC-CGCACGACC
* * * *
25104546 AAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCC
1 AAGGGCCTA-TTTGCCGATGGTGCCCGAGGCTTCCGCACGA-CC
* ** * ** * *
25104589 TAGCACCAAGATGCCTATGGTGCCCGAGGCTCCCGCACGACC
1 AAGGGCCTATTTGCCGATGGTGCCCGAGGCTTCCGCACGACC
25104631 AAGGGCCTAT
1 AAGGGCCTAT
25104641 GCGGCCGGAA
Statistics
Matches: 623, Mismatches: 190, Indels: 97
0.68 0.21 0.11
Matches are distributed among these distances:
41 13 0.02
42 254 0.41
43 343 0.55
44 13 0.02
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (42 bp):
AAGGGCCTATTTGCCGATGGTGCCCGAGGCTTCCGCACGACC
Found at i:25104054 original size:213 final size:210
Alignment explanation
Indices: 25103828--25104496 Score: 687
Period size: 213 Copynumber: 3.1 Consensus size: 210
25103818 CATCGAAGCC
* * *
25103828 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCCAGGTTGCCGATGGTGTCCG
* * * *
25103892 AAGTTCTCGCACATCCAAGCACCAAGGTGTCGATGGTTCTCGAGGCTTCTACATGACCAAGGGCC
66 AAGCTCTCGCACATCCAAGCACC-AGGTGCCGATGGTTC-CGAGGCTTCTGCACGACCAAGGGCC
* * * *
25103957 TAAGATGCTGAC-AT-TGGCCGAGGCTCTCGCACA-TCATAGCACCGAGGTGCCGATGGTGCCTG
129 T-AG-T-TTGACGATGTGGCCGAGGCTCTCGCACATTC-GAGCACCTAGGTGCCGATGGTGCCCG
25104019 AGGCTC-CTGCACGACCAAGGG
190 AGGCTCTC-GCACGACCAAGGG
* * * * * *
25104040 CCTAGGTAGCCGATGGTGCCCGAGTCTCCCGCAAGACCAAGGGCCGAGTTTGTCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCCAGGTTGCCGATGGTGTCCG
* * * * * * *
25104105 ACGCTCCCGCACATCCGAGCACTCAGGTGCCGATCGTGTCCGAGGGTCCTGCACGACCACGGGCC
66 AAGCTCTCGCACATCCAAGCAC-CAGGTGCCGATGGT-TCCGAGGCTTCTGCACGACCAAGGGCC
* * * * *
25104170 TGGTTTGTCGATGGTGTCCGAGGCTCTCGCACATTCGAGCGCCTAGGTGCTGATGGTGCCCGAGG
129 TAGTTTGACGAT-GTGGCCGAGGCTCTCGCACATTCGAGCACCTAGGTGCCGATGGTGCCCGAGG
*
25104235 CTTTCGCACGACCAAGGG
193 CTCTCGCACGACCAAGGG
*** * * * *
25104253 CCTAGGTTGCCGATGGTGTTTGAGGCTCCCGCAC-ATTCGAGTGCCCAGG-TGCC-AGTGGTGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCCAGGTTGCCGA-TGGTGTC
* ** *
25104315 CGAAGCTCTCGCAGGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC-TCGTGCACGACCAA
64 CGAAGCTCTCGCA-CATCCAAGCACC-AGG-TGCCGATGGT-TCCGAGGCTTC-TGCACGACCAA
* *
25104378 GGGCCTAGTTTGGCGATGGTGTG-CGAGACT-TCCGCACATTCGAGCACCTAGGTGCCGATGGTG
124 GGGCCTAGTTTGACGAT-GTG-GCCGAGGCTCT-CGCACATTCGAGCACCTAGGTGCCGATGGTG
25104441 CCCGAGGCTCTCGCACGACCAAGGG
186 CCCGAGGCTCTCGCACGACCAAGGG
25104466 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
25104497 TACATCCTAG
Statistics
Matches: 378, Mismatches: 63, Indels: 31
0.80 0.13 0.07
Matches are distributed among these distances:
210 3 0.01
211 5 0.01
212 38 0.10
213 326 0.86
214 6 0.02
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (210 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCCAGGTTGCCGATGGTGTCCG
AAGCTCTCGCACATCCAAGCACCAGGTGCCGATGGTTCCGAGGCTTCTGCACGACCAAGGGCCTA
GTTTGACGATGTGGCCGAGGCTCTCGCACATTCGAGCACCTAGGTGCCGATGGTGCCCGAGGCTC
TCGCACGACCAAGGG
Found at i:25104126 original size:128 final size:126
Alignment explanation
Indices: 25103828--25104578 Score: 474
Period size: 128 Copynumber: 5.9 Consensus size: 126
25103818 CATCGAAGCC
* ** *
25103828 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTG-CC
* * ** * * * * * *
25103891 GAAG-TTCTCGCAC-ATCCAAGCACCAAGGTGTCGATGGTTCTCGAGGCT-TCTACATGACCAAG
63 GAGGCTCCT-GCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTC-GCAAGACCAAG
25103953 GG
125 GG
* * * *** * * *
25103955 CCTAAGATGCTGACATTGGCCGAGGCTCTCGCACAT-CATAGCACCGAGGTGCCGATGGTGCCTG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCTAGGTGCCGATGGTGCC-G
* *
25104019 AGGCTCCTGCACGACCAAGGGCCTAGGTAGCCGATGGTGCCCGAGTCTCCCGCAAGACCAAGGG
64 AGGCTCCTGCACGACCAAGGGCCTAGGT-GCCGATGGTGCCCGAGGCTCTCGCAAGACCAAGGG
* * * * * * *
25104083 CCGAGTTTGTCGATGGTGTCCGACGCTCCCGCACATCCGAGCA-CTCAGGTGCCGATCGTGTCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCT-AGGTGCCGATGGTG-CCG
* * * * ** * *
25104147 AGGGTCCTGCACGACCACGGGCCT-GGTTTGTCGATGGTGTCCGAGGCTCTCGCACA-TTCGAGC
64 AGGCTCCTGCACGACCAAGGGCCTAGG--TGCCGATGGTGCCCGAGGCTCTCGCA-AGACCAAGG
25104210 G
126 G
* ** ** **
25104211 CCTAGG-TGCTGATGGTGCCCGAGGCTTTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTTT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGCCGATGGTG-CC
* * * * * * *
25104274 GAGGCTCCCGCAC-ATTCGAGTGCCCAGGTGCC-AGTGGTGCCCGAAGCTCTCGCAGGACCAAGG
63 GAGGCTCCTGCACGA-CCAAGGGCCTAGGTGCCGA-TGGTGCCCGAGGCTCTCGCAAGACCAAGG
25104337 G
126 G
** ** * * *
25104338 CCTAGGTTGCCGATGGTGCCCGAGGCTCGTGCACGA-CCAAGGGCCTAGTTTGGCGATGGTGTGC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCTAG-GTGCCGATGGTG-CC
* * * ** *
25104402 GAGACTTCC-GCAC-ATTCGAGCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
63 GAGGC-TCCTGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCAAGACCAAGG
25104465 G
126 G
* * * * *
25104466 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACATCCTAGCACCAAGATGCCTATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTG-CCGA
* *
25104531 GGCT-CTCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTC
65 GGCTCCT-GCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTC
25104579 CCGTACATCC
Statistics
Matches: 485, Mismatches: 109, Indels: 59
0.74 0.17 0.09
Matches are distributed among these distances:
125 1 0.00
126 3 0.01
127 127 0.26
128 342 0.71
129 12 0.02
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (126 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGTGCCGAG
GCTCCTGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCAAGACCAAGGG
Found at i:25104161 original size:298 final size:293
Alignment explanation
Indices: 25103751--25104639 Score: 1004
Period size: 298 Copynumber: 3.0 Consensus size: 293
25103741 GCCTATTCTA
* * * * * *
25103751 CCGATGGTGCCCGAGGCTTCCGCACGACCAAGGGCTTAGTTTGCCGATTGTGTCTGAGCCTTCTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGACTTCCG
*
25103816 CACATCGAAGCCCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
66 CACATCG-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
* * * * *
25103881 GATGGTGTCTGAAGTTCTCGCACATCCAAGCACCAAGGTGTCGATGGTTCTCGAGGCTTCTACAT
130 GATGGTGTCCGAGGCTCTCGCACATCCAAGCACCAAGGTG-CGATGGTGCCCGAGGCTTCTACA-
* * * *** * *
25103946 GACCAAGGGCCTAAGATGCTGACATTGGCCGAGGCTCTCGCACATCATAGCACCGAGGTGCCGAT
193 GACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCATAGCACC-AGGTGCC-AT
*
25104011 GGTGCCTGAGGCTCCTGCACGACCAAGGGCCTAGGTAG
256 GGTGCCCGAGGCTCCTGCACGACCAAGGGCCTAGGTAG
* * * * *
25104049 CCGATGGTGCCCGAGTCTCCCGCAAGACCAAGGGCCGAGTTTGTCGATGGTGTCCGACG-CTCCC
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA-GACTTCC
* * * *
25104113 GCACATCCGAGCA-CTCAGGTGCCGATCGTGTCCGAGGGTC-CTGCACGACCACGGGCCT-GGTT
65 GCACAT-CGAGCACCT-AGGTGCCGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGG-T
* * * * *
25104175 TGTCGATGGTGTCCGAGGCTCTCGCACATTCGAGCGCCTAGGTGCTGATGGTGCCCGAGGCTT-T
126 TGCCGATGGTGTCCGAGGCTCTCGCACATCCAAGCACCAAGGTGC-GATGGTGCCCGAGGCTTCT
* **
25104239 CGCACGACCAAGGGCCTAGGTTGCCGATGGTGTTTGAGGCTCCCGCACATTCGAGT-GC-CCAGG
190 -ACA-GACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACA-TC-A-TAGCACCAGG
* * *
25104302 TGCCAGTGGTGCCCGAAGCT-CTCGCAGGACCAAGGGCCTAGGTTG
250 TGCCA-TGGTGCCCGAGGCTCCT-GCACGACCAAGGGCCTAGGTAG
** * *
25104347 CCGATGGTGCCCGAGGCTCGTGCACGACCAAGGGCCTAGTTTGGCGATGGTGTGCGAGACTTCCG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGACTTCCG
25104412 CACATTCGAGCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
66 CACA-TCGAGCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC
* * * * * *
25104477 GATGGTGCCCGAGGCTCCCGTACATCCTAGCACCAAGATGCCTATGGTGCCCGAGGCTCTCGTAC
130 GATGGTGTCCGAGGCTCTCGCACATCCAAGCACCAAGGTG-CGATGGTGCCCGAGGCT-TC-TAC
* * *
25104542 -GACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTACATCCTAGCACCAAGATGCCTA
192 AGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCATAGCACC-AGGTGCC-A
*
25104606 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
255 TGGTGCCCGAGGCTCCTGCACGACCAAGGGCCTA
25104640 TGCGGCCGGA
Statistics
Matches: 493, Mismatches: 72, Indels: 52
0.80 0.12 0.08
Matches are distributed among these distances:
295 1 0.00
296 2 0.00
297 15 0.03
298 452 0.92
299 17 0.03
300 4 0.01
301 2 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (293 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGACTTCCG
CACATCGAGCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCG
ATGGTGTCCGAGGCTCTCGCACATCCAAGCACCAAGGTGCGATGGTGCCCGAGGCTTCTACAGAC
CAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCATAGCACCAGGTGCCATGGTGC
CCGAGGCTCCTGCACGACCAAGGGCCTAGGTAG
Found at i:25104527 original size:213 final size:211
Alignment explanation
Indices: 25103828--25104579 Score: 686
Period size: 213 Copynumber: 3.5 Consensus size: 211
25103818 CATCGAAGCC
* * * * * *
25103828 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCGCC-AAGATGCC-ATGGTGCCC
* * ** * * * * *
25103891 GAAGTTCTCGCACATCCAAGCACCAAGG-TGTCGATGGT-TCTCGAGGCTTCTACATGACCAAGG
63 GAAGCTCTCGCAGA-CCAAGGGCCTAGGTTGCCGATGGTGTC-CGAGGCTCCTGCACGACCAAGG
* * * * * *
25103954 GCCTAAGATGCTGAC-AT--TGGCCGAGGCTCTCGCACA-TCATAGCACCGAGGTGCCGATGGTG
126 GCCT-AG-T-TTGGCGATGGTGTCCGAGACTCTCGCACATTC-GAGCACCTAGGTGCCGATGGTG
*
25104015 CCTGAGGCTC-CTGCACGACCAAGGG
187 CCCGAGGCTCTC-GCACGACCAAGGG
* * * * * * * *
25104040 CCTAGGTAGCCGATGGTGCCCGAGTCTCCCGCA-AGACCAAGGGCCGAGTTTGTCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACA-TCCAAGCGCCAAG-ATG-CCATGGTGCCC
* * * * * * *
25104104 GACGCTCCCGCACATCC--GAGCACTCAGG-TGCCGATCGTGTCCGAGGGTCCTGCACGACCACG
63 GAAGCTCTCGCAGA-CCAAGGGC-CT-AGGTTGCCGATGGTGTCCGAGGCTCCTGCACGACCAAG
* * * * *
25104166 GGCCTGGTTTGTCGATGGTGTCCGAGGCTCTCGCACATTCGAGCGCCTAGGTGCTGATGGTGCCC
125 GGCCTAGTTTGGCGATGGTGTCCGAGACTCTCGCACATTCGAGCACCTAGGTGCCGATGGTGCCC
*
25104231 GAGGCTTTCGCACGACCAAGGG
190 GAGGCTCTCGCACGACCAAGGG
*** * * * * *
25104253 CCTAGGTTGCCGATGGTGTTTGAGGCTCCCGCACATTCGAGTGCCCAGGTGCCAGTGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCGCCAAGATGCCA-TGGTGCCCGA
* *
25104318 AGCTCTCGCAGGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCGTGCACGACCAAGGGCC
65 AGCTCTCGCA-GACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCTGCACGACCAAGGGCC
*
25104383 TAGTTTGGCGATGGTGTGCGAGACT-TCCGCACATTCGAGCACCTAGGTGCCGATGGTGCCCGAG
129 TAGTTTGGCGATGGTGTCCGAGACTCT-CGCACATTCGAGCACCTAGGTGCCGATGGTGCCCGAG
25104447 GCTCTCGCACGACCAAGGG
193 GCTCTCGCACGACCAAGGG
* * *
25104466 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACATCCTAGCACCAAGATGCCTATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCGCCAAGATGCC-ATGGTGCCCGA
* *
25104531 GGCTCTCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
65 AGCTCTCGCA-GACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC
25104580 CGTACATCCT
Statistics
Matches: 445, Mismatches: 74, Indels: 41
0.79 0.13 0.07
Matches are distributed among these distances:
210 3 0.01
211 8 0.02
212 34 0.08
213 389 0.87
214 11 0.02
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (211 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCGCCAAGATGCCATGGTGCCCGAA
GCTCTCGCAGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCTGCACGACCAAGGGCCTA
GTTTGGCGATGGTGTCCGAGACTCTCGCACATTCGAGCACCTAGGTGCCGATGGTGCCCGAGGCT
CTCGCACGACCAAGGG
Found at i:25104637 original size:85 final size:85
Alignment explanation
Indices: 25103564--25104639 Score: 648
Period size: 85 Copynumber: 12.6 Consensus size: 85
25103554 GCCAGCCCAT
* * *
25103564 TCCAGGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCAC-ATCTAA--GCACTAAGGTTGCCG
1 TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTTGCCG
25103626 ATGGTGTCCGAGGCTCCCGCACA
63 ATGGTGTCCGAGGCTCCCGCACA
* * * * * * *** *
25103649 TCCGAGCCACCAAGGTGCCCATGCTGCTCGAGGCTCCCGCAC-ATTCGACCACCAAGG-TGCCGA
1 TCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
*** *
25103712 TGGTG-CCTGAGGCTCTCAAAAAA
64 TGGTGTCC-GAGGCTC-CCGCACA
* ** *** * * * *
25103735 T-GAAGGGCCTATTCTACCGATGGTGCCCGAGGCTTCCGCACGACCAAGGGCTTAGTTTGCCGAT
1 TCCAAGCACC-AAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGAT
* * * * *
25103799 TGTGTCTGAGCCTTCTGCACA
65 GGTGTCCGAGGCTCCCGCACA
* * * *
25103820 TCGAAGCCCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATG
1 TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * * *
25103885 GTGTCTGAAGTTCTCGCACA
66 GTGTCCGAGGCTCCCGCACA
* * * * ** * * * * **
25103905 TCCAAGCACCAAGGTGTCGATGGTTCTCGAGGCTTCTACATGACCAAGGGCCTAAGATGCTGACA
1 TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * *
25103970 TTGGCCGAGGCTCTCGCACA
66 GTGTCCGAGGCTCCCGCACA
* * * *
25103990 T-CATAGCACCGAGGTGCCGATGGTGCCTGAGGCTCCTGCACGACCAAGGGCCTAGGTAGCCGAT
1 TCCA-AGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGAT
* *
25104054 GGTGCCCGAGTCTCCCGCA-A
65 GGTGTCCGAGGCTCCCGCACA
* ** * * * * * *
25104074 GACCAAGGGCCGAGTTTGTCGATGGTGTCCGACGCTCCCGCAC-ATCC--GAGCACTCAGG-TGC
1 -TCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTTGC
* * *
25104135 CGATCGTGTCCGAGGGTCCTGCACGA
61 CGATGGTGTCCGAGGCTCCCGCAC-A
* ** * * * * * * * *
25104161 -CCACGGGCC-TGGTTTGTCGATGGTGTCCGAGGCTCTCGCAC-ATTCGAGCGCCTAGG-TGCTG
1 TCCAAGCACCAAGG--TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCG
* **
25104222 ATGGTGCCCGAGGCTTTCGCACGA
63 ATGGTGTCCGAGGCTCCCGCAC-A
** * *** * * * *
25104246 -CCAAGGGCCTAGGTTGCCGATGGTGTTTGAGGCTCCCGCAC-ATTCGAGTGCCCAGG-TGCC-A
1 TCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGA
* * * *
25104307 GTGGTGCCCGAAGCTCTCGCAGGA
64 -TGGTGTCCGAGGCTCCCGCA-CA
** * ** * *
25104331 -CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCGTGCACGACCAAGGGCCTAGTTTGGCGAT
1 TCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGAT
* * *
25104395 GGTGTGCGAGACTTCCGCACA
65 GGTGTCCGAGGCTCCCGCACA
* * * *
25104416 TTCGAGCACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATG
1 TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* *
25104481 GTGCCCGAGGCTCCCGTACA
66 GTGTCCGAGGCTCCCGCACA
* * * * *
25104501 TCCTAGCACCAAGATGCCTATGGTGCCCGAGGCTCTCGTACGACCAAGGGCCTAGGTTGCCGATG
1 TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
*
25104566 GTGTCCGAGGCTCCCGTACA
66 GTGTCCGAGGCTCCCGCACA
* * *
25104586 TCCTAGCACCAAGATGCCTATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
1 TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
25104640 TGCGGCCGGA
Statistics
Matches: 781, Mismatches: 180, Indels: 60
0.76 0.18 0.06
Matches are distributed among these distances:
84 12 0.02
85 636 0.81
86 125 0.16
87 7 0.01
88 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (85 bp):
TCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
GTGTCCGAGGCTCCCGCACA
Found at i:25104708 original size:24 final size:24
Alignment explanation
Indices: 25104644--25104709 Score: 96
Period size: 24 Copynumber: 2.8 Consensus size: 24
25104634 GGCCTATGCG
* *
25104644 GCCGGAATGGTTCGCCAGAGCACC
1 GCCGGGATGGTTCGCCGGAGCACC
*
25104668 GCCGGGACGGTTCGCCGGAGCACC
1 GCCGGGATGGTTCGCCGGAGCACC
*
25104692 GCCGGGATGGATCGCCGG
1 GCCGGGATGGTTCGCCGG
25104710 GAACCTAATC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.15, C:0.33, G:0.41, T:0.11
Consensus pattern (24 bp):
GCCGGGATGGTTCGCCGGAGCACC
Found at i:25112841 original size:43 final size:42
Alignment explanation
Indices: 25112736--25113073 Score: 360
Period size: 43 Copynumber: 7.9 Consensus size: 42
25112726 ACTTTTGCTT
* *
25112736 TGGTGCTCGAGGCTCTCGGACATCCAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGA
*
25112778 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGGTTGCTGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGG-TGCCGA
* * * *
25112821 TGGTG-TCAAAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGG
1 TGGTGCTC-GAGGCTCTCGCACATCCAAG-CACCAAGGTGCCGA
* *
25112864 TGGTGCTCGAGGCTCTCGCACATACAAGCACCAAGGTACCGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGA
** * * *
25112906 TTATGCTCGAGCCTCTCGCACATCCAGGCACCAAGGTTGTCGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGG-TGCCGA
*
25112949 TGGTGGC-CGAGGCTC-CAGCACATCCGAGCACCAAGGTGCCGA
1 TGGT-GCTCGAGGCTCTC-GCACATCCAAGCACCAAGGTGCCGA
* * * ** *
25112991 TGGTGCTCGAGGCTTTCCCTCATCTGAGCCACCAAGGTTCCGA
1 TGGTGCTCGAGGCTCTCGCACATCCAAG-CACCAAGGTGCCGA
* *
25113034 TGGTGTTCGAGGCTC-CTGCAAATCCAAGCCACCAAGGTGC
1 TGGTGCTCGAGGCTCTC-GCACATCCAAG-CACCAAGGTGC
25113074 TAGAGGCTCT
Statistics
Matches: 245, Mismatches: 40, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.01
42 106 0.43
43 125 0.51
44 12 0.05
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.19
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGA
Found at i:25112964 original size:128 final size:127
Alignment explanation
Indices: 25112736--25113071 Score: 417
Period size: 128 Copynumber: 2.6 Consensus size: 127
25112726 ACTTTTGCTT
* * * *
25112736 TGGTGCTCGAGGCTCTCGGACATCCAAGCACCAAGGTACCGATGGTGCTCGAGGCTCTCGCACAT
1 TGGTGCTCGAGGCTCTCGCACATACAAGCACCAAGGTACCGATGATGCTCGAGCCTCTCGCACAT
* * *
25112801 CCAAGCACCAAGGTTGCTGATGGTGTCAAAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGG
66 CCAAGCACCAAGGTTGCTGATGGTGGCAAAGGCTCCAGCACATCCGAG-CACCAAGGTGCCGA
*
25112864 TGGTGCTCGAGGCTCTCGCACATACAAGCACCAAGGTACCGATTATGCTCGAGCCTCTCGCACAT
1 TGGTGCTCGAGGCTCTCGCACATACAAGCACCAAGGTACCGATGATGCTCGAGCCTCTCGCACAT
* **
25112929 CCAGGCACCAAGGTTG-TCGATGGTGGCCGAGGCTCCAGCACATCCGAGCACCAAGGTGCCGA
66 CCAAGCACCAAGGTTGCT-GATGGTGGCAAAGGCTCCAGCACATCCGAGCACCAAGGTGCCGA
* * * * * * * *
25112991 TGGTGCTCGAGGCTTTCCCTCAT-CTGAGCCACCAAGGTTCCGATGGTGTTCGAGGCTC-CTGCA
1 TGGTGCTCGAGGCTCTCGCACATAC-AAG-CACCAAGGTACCGATGATGCTCGAGCCTCTC-GCA
*
25113054 AATCCAAGCCACCAAGGT
63 CATCCAAG-CACCAAGGT
25113072 GCTAGAGGCT
Statistics
Matches: 181, Mismatches: 22, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
126 1 0.01
127 37 0.20
128 134 0.74
129 9 0.05
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.19
Consensus pattern (127 bp):
TGGTGCTCGAGGCTCTCGCACATACAAGCACCAAGGTACCGATGATGCTCGAGCCTCTCGCACAT
CCAAGCACCAAGGTTGCTGATGGTGGCAAAGGCTCCAGCACATCCGAGCACCAAGGTGCCGA
Found at i:25112979 original size:85 final size:84
Alignment explanation
Indices: 25112736--25113073 Score: 362
Period size: 85 Copynumber: 4.0 Consensus size: 84
25112726 ACTTTTGCTT
* *
25112736 TGGTGCTCGAGGCTCTCGGACATCCAAG-CACCAAGGTACCGATGGTGCTCGAGGCTCTCGCACA
1 TGGTGCTCGAGGCTCTCGCACATCC-AGCCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCACA
*
25112800 TCCAAGCACCAAGGTTGCTGA
65 TCCAAGCACCAAGG-TGCCGA
* * *
25112821 TGGTG-TCAAAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGGTGGTGCTCGAGGCTCTCGCAC
1 TGGTGCTC-GAGGCTCTCGCACATCC-AGCCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCAC
* *
25112885 ATACAAGCACCAAGGTACCGA
64 ATCCAAGCACCAAGGTGCCGA
** * * *
25112906 TTATGCTCGAGCCTCTCGCACATCCAGGCACCAAGGTTGTCGATGGTGGC-CGAGGCTC-CAGCA
1 TGGTGCTCGAGGCTCTCGCACATCCAGCCACCAAGG-TGCCGATGGT-GCTCGAGGCTCTC-GCA
*
25112969 CATCCGAGCACCAAGGTGCCGA
63 CATCCAAGCACCAAGGTGCCGA
* * * * * * *
25112991 TGGTGCTCGAGGCTTTCCCTCATCTGAGCCACCAAGGTTCCGATGGTGTTCGAGGCTC-CTGCAA
1 TGGTGCTCGAGGCTCTCGCACATC-CAGCCACCAAGGTGCCGATGGTGCTCGAGGCTCTC-GCAC
25113055 ATCCAAGCCACCAAGGTGC
64 ATCCAAG-CACCAAGGTGC
25113074 TAGAGGCTCT
Statistics
Matches: 210, Mismatches: 34, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
84 14 0.07
85 124 0.59
86 72 0.34
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.19
Consensus pattern (84 bp):
TGGTGCTCGAGGCTCTCGCACATCCAGCCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCACAT
CCAAGCACCAAGGTGCCGA
Found at i:25115047 original size:40 final size:40
Alignment explanation
Indices: 25114990--25115489 Score: 647
Period size: 40 Copynumber: 12.6 Consensus size: 40
25114980 TTGAATGCTG
* * * * * *
25114990 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
25115030 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25115070 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25115110 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
25115150 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25115190 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
25115230 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
25115270 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25115310 TCCGGGTT--GT-CCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25115347 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
25115387 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25115427 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25115466 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25115490 TGAACGAGGA
Statistics
Matches: 410, Mismatches: 41, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
37 32 0.08
38 1 0.00
39 38 0.09
40 329 0.80
41 10 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:25115203 original size:120 final size:120
Alignment explanation
Indices: 25114990--25115489 Score: 769
Period size: 120 Copynumber: 4.2 Consensus size: 120
25114980 TTGAATGCTG
* * * * * *
25114990 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGATTAAGATCCGAAGGCCTT
25115054 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
65 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25115110 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
25115175 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
25115230 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
25115295 GTGCGAGATACTAAATCCGGGTT--GT-CCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
25115347 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGAT-CCGAAGGCCTT
* * ** * * *
25115411 CGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
65 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25115466 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25115490 TGAACGAGGA
Statistics
Matches: 356, Mismatches: 19, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
116 1 0.00
117 106 0.30
118 2 0.01
119 36 0.10
120 205 0.58
121 6 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:25123229 original size:40 final size:40
Alignment explanation
Indices: 25123172--25123674 Score: 674
Period size: 40 Copynumber: 12.6 Consensus size: 40
25123162 TTGAATGCTG
* * * * * *
25123172 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
25123212 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25123252 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25123292 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
25123332 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25123372 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
25123412 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
25123452 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25123492 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25123532 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
25123572 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25123612 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25123651 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25123675 TGAACGAGGA
Statistics
Matches: 415, Mismatches: 41, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.09
40 368 0.89
41 10 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:25123385 original size:120 final size:120
Alignment explanation
Indices: 25123172--25123674 Score: 796
Period size: 120 Copynumber: 4.2 Consensus size: 120
25123162 TTGAATGCTG
* * * * * *
25123172 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGATTAAGATCCGAAGGCCTT
25123236 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
65 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25123292 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
25123357 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
25123412 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
25123477 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
25123532 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGAT-CCGAAGGCCTT
* * ** * * *
25123596 CGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
65 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25123651 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25123675 TGAACGAGGA
Statistics
Matches: 361, Mismatches: 20, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
119 35 0.10
120 320 0.89
121 6 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGATCCGAAGGCCTTT
GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:25133058 original size:20 final size:20
Alignment explanation
Indices: 25133033--25133077 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
25133023 CACCCTTGAC
25133033 CAAGTCACCAACTCAGTTAG
1 CAAGTCACCAACTCAGTTAG
25133053 CAAGTCACCAACTCAGTTAG
1 CAAGTCACCAACTCAGTTAG
25133073 CAAGT
1 CAAGT
25133078 TATGAGGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.20
Consensus pattern (20 bp):
CAAGTCACCAACTCAGTTAG
Found at i:25133257 original size:18 final size:19
Alignment explanation
Indices: 25133234--25133276 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
25133224 ACTAAAGTTT
25133234 TTTTAATATTT-TTAT-ACA
1 TTTTAAT-TTTATTATCACA
25133252 TTTTAATTTTATTATGCACA
1 TTTTAATTTTATTAT-CACA
25133272 TTTTA
1 TTTTA
25133277 TTACCTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.14
18 11 0.50
20 8 0.36
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTAATTTTATTATCACA
Found at i:25138761 original size:90 final size:93
Alignment explanation
Indices: 25138590--25138815 Score: 255
Period size: 90 Copynumber: 2.4 Consensus size: 93
25138580 TGACTCTACC
* *
25138590 AAATAAAATATCA-ATTTTATATTTAAATTAAAAAACACATTTACAAAAAAAAAAGATACAATAC
1 AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACATTT--AAAAAAAAAAGATACAATAC
* * * *
25138654 ACTTGTGGTGCCATTCTTAAT-GTCTCGACA
64 ACTGGTAGCGCCATTCTTAATGGT-TCCACA
* *
25138684 AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACA-TT-AAAAAACATG-TACAATACAC
1 AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACATTTAAAAAAAAAAGATACAATACAC
*
25138746 TGGTAGCGCCATTCTTAATGGTTCCACC
66 TGGTAGCGCCATTCTTAATGGTTCCACA
* *
25138774 AAATAAAATATGATTTTTTTTAATTTTTAAATTTAAAAAATA
1 AAATAAAATATCA--TTTTTT-ATATTTAAA-TTAAAAAATA
25138816 AAAAAAATAT
Statistics
Matches: 115, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
90 42 0.37
91 10 0.09
92 6 0.05
93 8 0.07
94 25 0.22
95 24 0.21
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (93 bp):
AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACATTTAAAAAAAAAAGATACAATACAC
TGGTAGCGCCATTCTTAATGGTTCCACA
Found at i:25140083 original size:44 final size:44
Alignment explanation
Indices: 25139986--25140072 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
25139976 TATTAATCAA
* *
25139986 GTAATAAAACCATCCAAACAAGCAGTCAAGCTAGCAATTATAAC
1 GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAAC
*
25140030 GTAATAAAATCATCCAAACAAGCAGTTAAGCAAGCAATTATAA
1 GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAA
25140073 TGTTAAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.49, C:0.20, G:0.11, T:0.20
Consensus pattern (44 bp):
GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAAC
Found at i:25150908 original size:34 final size:34
Alignment explanation
Indices: 25150859--25150934 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
25150849 GAGTTAGTTT
*
25150859 ATTAACTTTAGTTCAGCTCAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
* *
25150893 ATTAATTTTATTTCAGCTTAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
25150927 ATTAATTT
1 ATTAATTT
25150935 GTTTAAATCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.45
Consensus pattern (34 bp):
ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:25167689 original size:19 final size:19
Alignment explanation
Indices: 25167665--25167702 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
25167655 AGTTTTAGAT
25167665 TCTCGGGCCCAATTTTCAA
1 TCTCGGGCCCAATTTTCAA
* *
25167684 TCTCGGGTCTAATTTTCAA
1 TCTCGGGCCCAATTTTCAA
25167703 CTCCATTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (19 bp):
TCTCGGGCCCAATTTTCAA
Found at i:25182315 original size:25 final size:25
Alignment explanation
Indices: 25182277--25182382 Score: 90
Period size: 25 Copynumber: 4.3 Consensus size: 25
25182267 TGTAATCGGG
* * *
25182277 AAGCTCTTTCGAGCCATATAACAGA
1 AAGCTCATACGAGCCATATAACGGA
* ** *
25182302 AAGCTCATATGAGCTGTATAACGGG
1 AAGCTCATACGAGCCATATAACGGA
* * * *
25182327 AAGCTCTTACGAGCCAAATATCGGG
1 AAGCTCATACGAGCCATATAACGGA
25182352 AAGCTCATACGAGCCATA-AAC-GA
1 AAGCTCATACGAGCCATATAACGGA
25182375 GAAGCTCA
1 -AAGCTCA
25182383 AGAGAGTCAT
Statistics
Matches: 63, Mismatches: 17, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
23 1 0.02
24 9 0.14
25 53 0.84
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.20
Consensus pattern (25 bp):
AAGCTCATACGAGCCATATAACGGA
Found at i:25182423 original size:25 final size:25
Alignment explanation
Indices: 25182337--25182420 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
25182327 AAGCTCTTAC
*
25182337 GAGCCAA-ATATCGGGAAGCTCAT-A
1 GAGCCAATA-ATCGAGAAGCTCATGA
* *
25182361 CGAGCC-ATAAACGAGAAGCTCAAGA
1 -GAGCCAATAATCGAGAAGCTCATGA
* *
25182386 GAGTCATTAATCGAGAAGCTCATGA
1 GAGCCAATAATCGAGAAGCTCATGA
25182411 GAGCCGAATA
1 GAGCC-AATA
25182421 TCGGAAAGCT
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
24 16 0.35
25 27 0.59
26 3 0.07
ACGTcount: A:0.39, C:0.20, G:0.25, T:0.15
Consensus pattern (25 bp):
GAGCCAATAATCGAGAAGCTCATGA
Found at i:25184630 original size:41 final size:41
Alignment explanation
Indices: 25184583--25184692 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
25184573 TAGCAACCCC
*
25184583 TCGGGGAATCTGCATTTAGCAACCCCTTTTTGATCAGTGAT
1 TCGGGGAATCTGCATTTAGCAACCCCTTTTTGACCAGTGAT
* * *
25184624 TTGGGGAATCTGCATTTAGCAACCCTTTTTTTACCAGTGAT
1 TCGGGGAATCTGCATTTAGCAACCCCTTTTTGACCAGTGAT
* *
25184665 TCGAGGAATCTGCACTTAGCAACCCCTT
1 TCGGGGAATCTGCATTTAGCAACCCCTT
25184693 ACATTCAATG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (41 bp):
TCGGGGAATCTGCATTTAGCAACCCCTTTTTGACCAGTGAT
Found at i:25192134 original size:50 final size:50
Alignment explanation
Indices: 25192080--25192554 Score: 306
Period size: 50 Copynumber: 9.5 Consensus size: 50
25192070 TAAGAAGGTA
* * *
25192080 AGATCCGTCGTTGTGGCTTCAATCTTTTTAATTACGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
* * * * * * * ** ***
25192130 AGATCCGCCATTGTGACTTCAAT-TTGCTTCACTGCACCGCCAAGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTT-TTTAATTGCACTGTCGGGGAAACC
* * **
25192180 AGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGTGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
* * * ** ** * * * * ***
25192230 AAATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
*
25192280 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTATCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
* * ** ** * * * * ***
25192330 AGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
*
25192380 AGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
** ** * ** * * * * ***
25192430 AGATTTGCCGTTGTGATTTCAAT-TTGCTCCACTGCACCGCCCGGGAAGTA
1 AGATCCGCCGTTGTGGCTTCAATCTT-TTTAATTGCACTGTCGGGGAAACC
* *
25192480 AGATCCGCTGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
** * *
25192530 AGATCTACTGTTGTGACTTCAATCT
1 AGATCCGCCGTTGTGGCTTCAATCT
25192555 GCTCCACTAC
Statistics
Matches: 300, Mismatches: 121, Indels: 8
0.70 0.28 0.02
Matches are distributed among these distances:
49 4 0.01
50 292 0.97
51 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (50 bp):
AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
Found at i:25192134 original size:100 final size:100
Alignment explanation
Indices: 25192050--25192614 Score: 853
Period size: 100 Copynumber: 5.7 Consensus size: 100
25192040 TCGTAGCTTA
* * * * * *
25192050 AATCTGTTCAACTGCACCGCTA-AGAAGGTAAGATCCGTCGTTGTGGCTTCAATCTTTTTAATTA
1 AATCTGCTCCACTGCACCGCCAGGGAA-GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTG
* *
25192114 CGCTGTCGGGGAAACCAGATCCGCCATTGTGACTTC
65 CGCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
* * * * * *
25192150 AATTTGCTTCACTGCACCGCCAAGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGT
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
*
25192215 GCTGTCGGGGAAACCAAATCTGCCGTTGTGACTTC
66 GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
25192250 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
* *
25192315 ACTATCGGGGAAACCAGATCTGCCGTTGTGACTTC
66 GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
*
25192350 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGC
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
* * *
25192415 ACTGTCGGGGAAACCAGATTTGCCGTTGTGATTTC
66 GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
* * *
25192450 AATTTGCTCCACTGCACCGCCCGGGAAGTAAGATCCGCTGTTGTGGCTTCAATCTTTTTAATTGC
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
* *
25192515 GCTGTCGGGGAAACCAGATCTACTGTTGTGACTTC
66 GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
* * *
25192550 AATCTGCTCCACTACACCGCCAGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTAAATTGC
1 AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
25192615 AATGTCAAAG
Statistics
Matches: 422, Mismatches: 42, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
100 419 0.99
101 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (100 bp):
AATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
GCTGTCGGGGAAACCAGATCTGCCGTTGTGACTTC
Found at i:25192576 original size:50 final size:50
Alignment explanation
Indices: 25192122--25192604 Score: 304
Period size: 50 Copynumber: 9.7 Consensus size: 50
25192112 TACGCTGTCG
* * * * *
25192122 GGGAAACCAGATCCGCCATTGTGACTTCAATTTGCTTCACTGCACCGCCA
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
* ** * ** ** * ** * * *
25192172 AGGAAGTAAGAT-TCGCCGTTGTGGCTTCAATCTTTTAAATTGTGCTGTCG
1 GGGAAACAAGATCT-GCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
25192222 GGGAAACCAA-ATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
1 GGGAAA-CAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
** * * ** ** * *** *
25192272 GGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTATCG
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
*
25192322 GGGAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
** * ** ** * * * *
25192372 GGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCG
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
* * * * *
25192422 GGGAAACCAGATTTGCCGTTGTGATTTCAATTTGCTCCACTGCACCGCCC
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
** * * * ** ** * * * * *
25192472 GGGAAGTAAGATCCGCTGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCG
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
* * * *
25192522 GGGAAACCAGATCTACTGTTGTGACTTCAATCTGCTCCACTACACCGCCA
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
** *
25192572 GGGAAGTAAGATCTGCCGTTGTGGCTTCAATCT
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCT
25192605 TTTAAATTGC
Statistics
Matches: 303, Mismatches: 126, Indels: 8
0.69 0.29 0.02
Matches are distributed among these distances:
49 2 0.01
50 298 0.98
51 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.29
Consensus pattern (50 bp):
GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
Found at i:25194075 original size:22 final size:22
Alignment explanation
Indices: 25194050--25194093 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
25194040 TTAGCCTCTC
*
25194050 CATTTTTATTTTTTTCAT-TTTT
1 CATTTTCA-TTTTTTCATATTTT
25194072 CATTTTCATTTTTTCATATTTT
1 CATTTTCATTTTTTCATATTTT
25194094 TTCACATCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (22 bp):
CATTTTCATTTTTTCATATTTT
Found at i:25198933 original size:16 final size:16
Alignment explanation
Indices: 25198912--25198942 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25198902 AAACATTGAG
25198912 AACATACATATATATT
1 AACATACATATATATT
*
25198928 AACATATATATATAT
1 AACATACATATATAT
25198943 ACGCGCACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.39
Consensus pattern (16 bp):
AACATACATATATATT
Found at i:25202304 original size:83 final size:83
Alignment explanation
Indices: 25202202--25202367 Score: 332
Period size: 83 Copynumber: 2.0 Consensus size: 83
25202192 AAATAAGAGT
25202202 GGAAGAATAACAATAAGCTAATTCTAAAATTTAAAACATTCAACATCTATTATGCTTCTTTACTT
1 GGAAGAATAACAATAAGCTAATTCTAAAATTTAAAACATTCAACATCTATTATGCTTCTTTACTT
25202267 TGAAAAGGTATTTATAAA
66 TGAAAAGGTATTTATAAA
25202285 GGAAGAATAACAATAAGCTAATTCTAAAATTTAAAACATTCAACATCTATTATGCTTCTTTACTT
1 GGAAGAATAACAATAAGCTAATTCTAAAATTTAAAACATTCAACATCTATTATGCTTCTTTACTT
25202350 TGAAAAGGTATTTATAAA
66 TGAAAAGGTATTTATAAA
25202368 AATTTGGGAC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (83 bp):
GGAAGAATAACAATAAGCTAATTCTAAAATTTAAAACATTCAACATCTATTATGCTTCTTTACTT
TGAAAAGGTATTTATAAA
Found at i:25206695 original size:61 final size:61
Alignment explanation
Indices: 25206598--25206720 Score: 185
Period size: 61 Copynumber: 2.0 Consensus size: 61
25206588 TTAACAACTT
* *
25206598 ACTTAATTTCACGATCGGACAATCTAAATGATTCGAATCAACAATGAACCGAGTTCGTATC
1 ACTTAATTTCACGATCGGACAATCTAAACGACTCGAATCAACAATGAACCGAGTTCGTATC
* * *
25206659 ACTTAATTTCATGATCGG-CAAATCTAAACGACTCGAATCAACACTGAACTGAGTTCGTATC
1 ACTTAATTTCACGATCGGAC-AATCTAAACGACTCGAATCAACAATGAACCGAGTTCGTATC
25206720 A
1 A
25206721 TTTGGTATCA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 1 0.02
61 55 0.98
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.28
Consensus pattern (61 bp):
ACTTAATTTCACGATCGGACAATCTAAACGACTCGAATCAACAATGAACCGAGTTCGTATC
Found at i:25207313 original size:46 final size:48
Alignment explanation
Indices: 25207226--25207320 Score: 140
Period size: 50 Copynumber: 2.0 Consensus size: 48
25207216 GTTTAGTTAA
* *
25207226 ATTAGTTTAATTAATTAAGTTGTTTTTAAGTTTCTTTAGTTGCTTAAATC
1 ATTAGGTTAATGAATTAAGTTGTTTTTAA--TTCTTTAGTTGCTTAAATC
25207276 ATTAGGTTAATGAATTAAGTTGTTTTTAA-T-TTTAGTTGCTTAAAT
1 ATTAGGTTAATGAATTAAGTTGTTTTTAATTCTTTAGTTGCTTAAAT
25207321 AATTTTGGCA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
46 15 0.35
47 1 0.02
50 27 0.63
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.53
Consensus pattern (48 bp):
ATTAGGTTAATGAATTAAGTTGTTTTTAATTCTTTAGTTGCTTAAATC
Found at i:25207489 original size:20 final size:20
Alignment explanation
Indices: 25207464--25207505 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
25207454 AGCTGTTATA
25207464 AAGTTGAATTAAAGGCCAAC
1 AAGTTGAATTAAAGGCCAAC
25207484 AAGTTGAATTAAAGGCCAAC
1 AAGTTGAATTAAAGGCCAAC
25207504 AA
1 AA
25207506 CTGTTATGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (20 bp):
AAGTTGAATTAAAGGCCAAC
Found at i:25210541 original size:37 final size:37
Alignment explanation
Indices: 25210500--25210573 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
25210490 AAATAGCGTG
25210500 AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
1 AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
25210537 AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
1 AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
25210574 TTTCTGAGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (37 bp):
AGTAAACACGAGTGAGAGTGAAATCATTTAATCTTTC
Found at i:25215583 original size:15 final size:14
Alignment explanation
Indices: 25215560--25215605 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
25215550 TCTCTCTCGC
*
25215560 TTTCCTTTTCACCTT
1 TTTCATTTTCA-CTT
*
25215575 TTTCATTTTCATTT
1 TTTCATTTTCACTT
25215589 TCTTCATTTTCACTT
1 T-TTCATTTTCACTT
25215604 TT
1 TT
25215606 ATTTTTCTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.11, C:0.24, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTCATTTTCACTT
Found at i:25241533 original size:20 final size:20
Alignment explanation
Indices: 25241505--25241542 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
25241495 TTATTTAGTA
25241505 TTAAGATTACTTGTTTAAAAT
1 TTAAGATTAC-TGTTTAAAAT
25241526 TTAA-ATTACTGTTTAAA
1 TTAAGATTACTGTTTAAA
25241543 TACAATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 5 0.29
21 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (20 bp):
TTAAGATTACTGTTTAAAAT
Found at i:25266018 original size:22 final size:22
Alignment explanation
Indices: 25265983--25266037 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 22
25265973 ACTTGTGAAT
25265983 ATTATGATTATTGATATG-ATGAG
1 ATTAT-ATT-TTGATATGTATGAG
*
25266006 ATTGATATTTTGATATGTATGTG
1 ATT-ATATTTTGATATGTATGAG
25266029 ATTATATTT
1 ATTATATTT
25266038 GTGTCGATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 14 0.48
23 13 0.45
24 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (22 bp):
ATTATATTTTGATATGTATGAG
Found at i:25267101 original size:24 final size:24
Alignment explanation
Indices: 25267074--25267119 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
25267064 TGATCATGTC
*
25267074 AATGCAGTGTTTGCAGAAAAAGGT
1 AATGCAATGTTTGCAGAAAAAGGT
* * *
25267098 AATGTAATGTTTTCAGATAAAG
1 AATGCAATGTTTGCAGAAAAAG
25267120 ATCCTACCTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (24 bp):
AATGCAATGTTTGCAGAAAAAGGT
Found at i:25273716 original size:14 final size:14
Alignment explanation
Indices: 25273683--25273709 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25273673 CTACTCATTT
25273683 AATTTTCTTTTTGA
1 AATTTTCTTTTTGA
25273697 AATTTTCTTTTTG
1 AATTTTCTTTTTG
25273710 CACTTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.67
Consensus pattern (14 bp):
AATTTTCTTTTTGA
Found at i:25278146 original size:19 final size:19
Alignment explanation
Indices: 25278118--25278157 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
25278108 ATTAATTTTG
* *
25278118 ATCAAGTAAAATGAAATTA
1 ATCAAATAAAATAAAATTA
*
25278137 ATCAAATAAATTAAAATTA
1 ATCAAATAAAATAAAATTA
25278156 AT
1 AT
25278158 ATGATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (19 bp):
ATCAAATAAAATAAAATTA
Found at i:25282131 original size:14 final size:14
Alignment explanation
Indices: 25282112--25282150 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
25282102 AATTGCTTTC
25282112 GTAAAGAGTTTACA
1 GTAAAGAGTTTACA
* *
25282126 GTAAAGAGTATATA
1 GTAAAGAGTTTACA
25282140 GTAAAGAGTTT
1 GTAAAGAGTTT
25282151 TCAATCATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.44, C:0.03, G:0.23, T:0.31
Consensus pattern (14 bp):
GTAAAGAGTTTACA
Found at i:25284181 original size:27 final size:27
Alignment explanation
Indices: 25284143--25284197 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
25284133 TCTTCAAGCT
25284143 TAGTTAATTTTTTTTAAATTAGTGCAC
1 TAGTTAATTTTTTTTAAATTAGTGCAC
* *
25284170 TAGTTAATTTTTTTTGAATTGGTGCAC
1 TAGTTAATTTTTTTTAAATTAGTGCAC
25284197 T
1 T
25284198 CAGACTGCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.53
Consensus pattern (27 bp):
TAGTTAATTTTTTTTAAATTAGTGCAC
Found at i:25289189 original size:16 final size:16
Alignment explanation
Indices: 25289168--25289232 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
25289158 TTCACTGTAT
25289168 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
* *
25289184 TGGAATAAAGGTGTAA
1 TGGAATAGAGGCGTAA
25289200 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
25289216 TGGAATAGAGACGTAA
1 TGGAATAGAGGCGTAA
25289232 T
1 T
25289233 AACAATTCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.40, C:0.05, G:0.34, T:0.22
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:25289600 original size:102 final size:99
Alignment explanation
Indices: 25289483--25289799 Score: 487
Period size: 100 Copynumber: 3.2 Consensus size: 99
25289473 TCATTAAAAT
* *
25289483 ATATAATTTAATAAAATTCTGAATATTAAATATTTTTATATGAATTTACTAAAATCATAATATAC
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATA-
25289548 AATACTATAAAATATAATTTAAAGTTATTATTATTAA
65 AATACTATAAAATATAATTTAAA--TATTATTATTAA
*
25289585 ATATAATTTACTAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATAT-A
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAA
* *
25289649 ATAATTTAAAATATAATTTAAAATAATTATTATTAA
66 ATACTATAAAATATAATTT-AAAT-ATTATTATTAA
*
25289685 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTCTATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATA-
*
25289750 AATACTACAAAATATAATTTAAA-ATTATTATTAA
65 AATACTATAAAATATAATTTAAATATTATTATTAA
25289784 ATATAA-TTAGATAAAA
1 ATATAATTTA-ATAAAA
25289800 ATATATAATT
Statistics
Matches: 200, Mismatches: 10, Indels: 13
0.90 0.04 0.06
Matches are distributed among these distances:
98 3 0.01
99 24 0.12
100 90 0.45
101 6 0.03
102 77 0.38
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (99 bp):
ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATAA
ATACTATAAAATATAATTTAAATATTATTATTAA
Found at i:25289666 original size:12 final size:12
Alignment explanation
Indices: 25289649--25289695 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
25289639 TCATAATATA
25289649 ATAATTTAAAAT
1 ATAATTTAAAAT
25289661 ATAATTTAAAAT
1 ATAATTTAAAAT
* *
25289673 AATTATTATTAAAT
1 -ATAATT-TAAAAT
25289687 ATAATTTAA
1 ATAATTTAA
25289696 TAAAATTCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 14 0.48
13 10 0.34
14 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATAATTTAAAAT
Found at i:25293854 original size:35 final size:35
Alignment explanation
Indices: 25293808--25293877 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
25293798 ACCCTTTTAC
*
25293808 TCTCCCAATTCTCCCAATTGCTTTTGATCTACAAT
1 TCTCCCAATTCTCCCAATTACTTTTGATCTACAAT
*
25293843 TCTCCCAATTCTCCCAATTACTTTTGATCTGCAAT
1 TCTCCCAATTCTCCCAATTACTTTTGATCTACAAT
25293878 CCTATTACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.23, C:0.31, G:0.06, T:0.40
Consensus pattern (35 bp):
TCTCCCAATTCTCCCAATTACTTTTGATCTACAAT
Found at i:25297331 original size:40 final size:40
Alignment explanation
Indices: 25297287--25297531 Score: 258
Period size: 40 Copynumber: 6.2 Consensus size: 40
25297277 TAATTATTGT
*
25297287 TTGAATGGACATACGTGCCCCTGTTTGTACTTCGGTACCC
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
25297327 TTGAATGCACATATGTGCTCCTGTTTTTACTTCGGTACCC
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * * * * * ***
25297367 CTAAATTCACATACATGCCCCTATTTGTACTTCAGTATTG
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
25297407 TTGAATGCACATACGTGCCTCTTTTTGTACTTTGGTACCC
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
** * *
25297447 CAGAATGCACATATGTGCCCCTGTTTGTACTTCAGTACCC
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * * *
25297487 -TAAATGCACATACGTGCCCCTATTTGTACTTTGGTAACC
1 TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
*
25297526 GTGAAT
1 TTGAAT
25297532 CAAATAATAT
Statistics
Matches: 162, Mismatches: 42, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
39 32 0.20
40 130 0.80
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.36
Consensus pattern (40 bp):
TTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
Found at i:25297997 original size:16 final size:16
Alignment explanation
Indices: 25297976--25298042 Score: 82
Period size: 16 Copynumber: 4.2 Consensus size: 16
25297966 TTCGCTGTAT
25297976 TAGAATAGAGGCGTAA
1 TAGAATAGAGGCGTAA
25297992 TAGAATAGAGGCGTAA
1 TAGAATAGAGGCGTAA
*
25298008 T-GAAATAGAGGTGTAA
1 TAG-AATAGAGGCGTAA
* * *
25298024 TGGAATAAAGACGTAA
1 TAGAATAGAGGCGTAA
25298040 TAG
1 TAG
25298043 CAAATCAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
15 1 0.02
16 42 0.95
17 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.30, T:0.21
Consensus pattern (16 bp):
TAGAATAGAGGCGTAA
Found at i:25298291 original size:16 final size:16
Alignment explanation
Indices: 25298254--25298295 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
25298244 TTAATCATAT
*
25298254 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
25298270 TT-AAATATATTATAA
1 TTAAAATATATTATAA
25298285 TTAAAATATAT
1 TTAAAATATAT
25298296 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:25298302 original size:14 final size:15
Alignment explanation
Indices: 25298263--25298304 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25298253 TTTAAACATA
*
25298263 ATTATTATTAAATAT
1 ATTATAATTAAATAT
25298278 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
25298292 A-TATAATTTAATA
1 ATTATAATTAAATA
25298305 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:25298422 original size:14 final size:16
Alignment explanation
Indices: 25298369--25298422 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 16
25298359 TACTATAAAA
25298369 TATAATTTAACATA-AT
1 TATAATTTAA-ATATAT
*
25298385 TAT-TTTTAAATATAT
1 TATAATTTAAATATAT
25298400 TATAA-TTAAA-ATA-
1 TATAATTTAAATATAT
25298413 TATAATTTAA
1 TATAATTTAA
25298423 TAAAATTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
13 5 0.15
14 10 0.30
15 15 0.45
16 3 0.09
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
TATAATTTAAATATAT
Found at i:25298542 original size:14 final size:16
Alignment explanation
Indices: 25298489--25298542 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 16
25298479 TACTATAAAA
25298489 TATAATTTAACATA-AT
1 TATAATTTAA-ATATAT
*
25298505 TAT-TTTTAAATATAT
1 TATAATTTAAATATAT
25298520 TATAA-TTAAA-ATA-
1 TATAATTTAAATATAT
25298533 TATAATTTAA
1 TATAATTTAA
25298543 TAAAATTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
13 5 0.15
14 10 0.30
15 15 0.45
16 3 0.09
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
TATAATTTAAATATAT
Found at i:25298655 original size:18 final size:17
Alignment explanation
Indices: 25298634--25298668 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25298624 TTATTATTAA
*
25298634 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
25298652 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
25298669 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:25298798 original size:120 final size:120
Alignment explanation
Indices: 25298252--25298789 Score: 943
Period size: 120 Copynumber: 4.5 Consensus size: 120
25298242 ATTTAATCAT
25298252 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
25298317 ATCAATATTGTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
65 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
*
25298373 ATTTAACATAATTATTTTTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
* *
25298438 TCAATATTGTTATATGAATTTACTGAAATCATAATATATGATACTATAAAATATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
*
25298493 ATTTAACATAATTATTTTTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
* *
25298558 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
*
25298613 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
25298678 TCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
66 TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
* * *
25298733 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
25298790 GAAAATAATT
Statistics
Matches: 403, Mismatches: 13, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
120 397 0.99
121 6 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
ATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
TCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
Found at i:25298843 original size:47 final size:45
Alignment explanation
Indices: 25298771--25299120 Score: 199
Period size: 47 Copynumber: 7.6 Consensus size: 45
25298761 TTAATTAAAA
* * *
25298771 TATATGATTTAATAAAATTGAAAATAATTATAACTAATAAATTTTCT
1 TATATGAATT-ATATAATTTAAAATAATTATAA-TAATAAATTTTCT
* * **
25298818 TATATGAATCTGTATAATTTAAAATAATTATTATTAAATATAA-TTTAA
1 TATATGAAT-TATATAATTTAAAATAATTA-TAAT-AATA-AATTTTCT
* * *
25298866 TA-AT-AA-TATATAATTTCATAA-AATTCTTGATAATAAATTTTCT
1 TATATGAATTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
* **
25298909 TATATGAATTTATATAATTTAAAATAATTAATATTAAATACAA-TTTAA
1 TATATGAA-TTATATAATTTAAAATAATT-ATAAT-AATA-AATTTTCT
* * *
25298957 TA-ATG-A-TATATAATTTCATAA-AATTCTTGATAATAAATTTTCT
1 TATATGAATTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
* * **
25299000 TATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA-TTTAA
1 TATATGAA-TTATATAATTTAAAATAATT-ATAAT-AATA-AATTTTCT
* *
25299048 TA-ATG-A-TATATAATTTCATAA-AATTATTGATAATAAATTTTCT
1 TATATGAATTATATAATTT-AAAATAATTA-TAATAATAAATTTTCT
*
25299091 TATATGAATTTATACAATTTAAAATAATTA
1 TATATGAA-TTATATAATTTAAAATAATTA
25299121 ATATTAAATA
Statistics
Matches: 228, Mismatches: 44, Indels: 62
0.68 0.13 0.19
Matches are distributed among these distances:
42 6 0.03
43 28 0.12
44 54 0.24
45 13 0.06
46 13 0.06
47 78 0.34
48 30 0.13
49 6 0.03
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (45 bp):
TATATGAATTATATAATTTAAAATAATTATAATAATAAATTTTCT
Found at i:25298906 original size:91 final size:91
Alignment explanation
Indices: 25298805--25299137 Score: 594
Period size: 91 Copynumber: 3.7 Consensus size: 91
25298795 TAATTATAAC
* * * *
25298805 TAATAAATTTTCTTATATGAATCTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
25298870 AATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
* *
25298896 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATACAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
25298961 GATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
25298987 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
25299052 GATATATAATTTCATAAAATTATTGA
66 GATATATAATTTCATAAAATTCTTGA
25299078 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTA
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTA
25299138 TACAATTTAA
Statistics
Matches: 234, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 234 1.00
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
GATATATAATTTCATAAAATTCTTGA
Found at i:25299135 original size:16 final size:16
Alignment explanation
Indices: 25299109--25299175 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 16
25299099 TTTATACAAT
25299109 TTAAAATAA-TTAATA
1 TTAAAATAATTTAATA
*
25299124 TTAAATATAATTTATACAA
1 TTAAA-ATAATTTA-A-TA
25299143 TTTAAAATAA-TTAATA
1 -TTAAAATAATTTAATA
25299159 TTAAATATAATTTAATA
1 TTAAA-ATAATTTAATA
25299176 ATGATATATA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
15 10 0.23
16 9 0.21
17 10 0.23
18 4 0.09
19 5 0.12
20 5 0.12
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAAAATAATTTAATA
Found at i:25299136 original size:35 final size:35
Alignment explanation
Indices: 25299092--25299172 Score: 153
Period size: 35 Copynumber: 2.3 Consensus size: 35
25299082 AAATTTTCTT
25299092 ATATGAATTTATACAATTTAAAATAATTAATATTAA
1 ATAT-AATTTATACAATTTAAAATAATTAATATTAA
25299128 ATATAATTTATACAATTTAAAATAATTAATATTAA
1 ATATAATTTATACAATTTAAAATAATTAATATTAA
25299163 ATATAATTTA
1 ATATAATTTA
25299173 ATAATGATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 41 0.91
36 4 0.09
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.43
Consensus pattern (35 bp):
ATATAATTTATACAATTTAAAATAATTAATATTAA
Found at i:25299145 original size:44 final size:44
Alignment explanation
Indices: 25298830--25299146 Score: 184
Period size: 44 Copynumber: 7.0 Consensus size: 44
25298820 TATGAATCTG
* * *
25298830 TATAATTTAAAATAATTATTATTAAATATAATTTA-ATAATAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTATAGAAT-TTA
** * * *
25298874 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTATA-GAATTTA
* * *
25298921 TATAATTTAAAATAATTAATATTAAATACAATTTA-ATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTATAGAAT-TTA
** * * *
25298965 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTATA-GAATTTA
* * *
25299012 TACAATTTAAAATAATTAATATTAAATATAATTTA-ATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTATAGAAT-TTA
* * * *
25299056 TATAATTTCATAAAATTATTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTATA-GAATTTA
* *
25299103 TACAATTTAAAATAATTAATATTAAATATAATTTATACAATTTA
1 TATAATTTAAAATAATTAATATTAAATATAATTTATAGAATTTA
25299147 AAATAATTAA
Statistics
Matches: 202, Mismatches: 45, Indels: 52
0.68 0.15 0.17
Matches are distributed among these distances:
43 6 0.03
44 75 0.37
45 22 0.11
46 20 0.10
47 70 0.35
48 9 0.04
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (44 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTATAGAATTTA
Found at i:25299146 original size:126 final size:128
Alignment explanation
Indices: 25299001--25299229 Score: 417
Period size: 126 Copynumber: 1.8 Consensus size: 128
25298991 AAATTTTCTT
25299001 ATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 ATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
* *
25299066 TAAAATTATTGATAAT-AAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAA
66 TAAAATTATTAATAATAAAATGTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAA
25299128 ATAT-AATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 ATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
*
25299192 TAAAATTCTTAATAATAAAATGTTCTTATATGAATTTA
66 TAAAATTATTAATAATAAAATGTTCTTATATGAATTTA
25299230 CTAAAATCAA
Statistics
Matches: 98, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
126 74 0.76
127 24 0.24
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (128 bp):
ATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
TAAAATTATTAATAATAAAATGTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAA
Found at i:25299154 original size:19 final size:19
Alignment explanation
Indices: 25299097--25299154 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
25299087 TTCTTATATG
25299097 AATTTATACAATTTAAAAT
1 AATTTATACAATTTAAAAT
*
25299116 AA-TTA-A-TA-TTAAATAT
1 AATTTATACAATTTAAA-AT
25299132 AATTTATACAATTTAAAAT
1 AATTTATACAATTTAAAAT
25299151 AATT
1 AATT
25299155 AATATTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
15 5 0.16
16 5 0.16
17 4 0.12
18 4 0.12
19 9 0.28
20 5 0.16
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (19 bp):
AATTTATACAATTTAAAAT
Found at i:25301900 original size:33 final size:33
Alignment explanation
Indices: 25301853--25301920 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
25301843 GCGTGTGGAG
25301853 AACTATGAGAAACAGAGGGAGCAAATCGGCAGA
1 AACTATGAGAAACAGAGGGAGCAAATCGGCAGA
* *
25301886 AACTGTGAGAAACAGAGGGAGCAAATTGGCAGA
1 AACTATGAGAAACAGAGGGAGCAAATCGGCAGA
25301919 AA
1 AA
25301921 AAAAAAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.46, C:0.13, G:0.31, T:0.10
Consensus pattern (33 bp):
AACTATGAGAAACAGAGGGAGCAAATCGGCAGA
Found at i:25308979 original size:18 final size:18
Alignment explanation
Indices: 25308953--25308989 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
25308943 TCCTAGGATG
25308953 ATTGACACCTCGTTATCT
1 ATTGACACCTCGTTATCT
*
25308971 ATTGGCACCTCGTTATCT
1 ATTGACACCTCGTTATCT
25308989 A
1 A
25308990 CTTTAAAGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.38
Consensus pattern (18 bp):
ATTGACACCTCGTTATCT
Found at i:25309550 original size:23 final size:23
Alignment explanation
Indices: 25309514--25309564 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
25309504 TAGTGGACCT
* * *
25309514 TGTAATATCTCGAAAATTATTAC
1 TGTAATACCCCGAAAATTACTAC
25309537 TGTAATACCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
*
25309560 AGTAA
1 TGTAA
25309565 GAAAATAGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:25315269 original size:29 final size:27
Alignment explanation
Indices: 25315231--25315285 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
25315221 GTGATTAAAT
25315231 AAAATCGACA-CAAGCAGAATTTAAAAGAA
1 AAAATCGACAGCAAG-A-AA-TTAAAAGAA
*
25315260 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
25315286 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 8 0.33
28 2 0.08
29 10 0.42
30 4 0.17
ACGTcount: A:0.60, C:0.11, G:0.15, T:0.15
Consensus pattern (27 bp):
AAAATCGACAGCAAGAAATTAAAAGAA
Found at i:25323695 original size:120 final size:121
Alignment explanation
Indices: 25323536--25323781 Score: 354
Period size: 120 Copynumber: 2.0 Consensus size: 121
25323526 CAATTATTGT
* * *
25323536 TTGAATGCACATACGTGCCTCTATTTCTACTTCTGTACCCTTGAATACACATACGTGCCCCTATT
1 TTGAATGCACATACGTACCCCTATTTCTACTTCTGTACCCATGAATACACATACGTGCCCCTATT
* *
25323601 TGTACTTCGGTACCCCTGAATGCACATAAGTGCCCTTATTTTTACTTTGG-AACCA
66 TGTACTTCAGTACCCCTGAATGCACATAAGTGCCCTTATTTGTACTTTGGTAACCA
* * * * *
25323656 TTGAATGCACATACGTACCCCTATTTGTACTTC-GATACCCATGAATGCACATATGTTCCCTTAT
1 TTGAATGCACATACGTACCCCTATTTCTACTTCTG-TACCCATGAATACACATACGTGCCCCTAT
* *
25323720 TTGTACTTCAGTACCCCTGAATGCACATATGTGCCCTTGTTTGTACTTTGGTAACCA
65 TTGTACTTCAGTACCCCTGAATGCACATAAGTGCCCTTATTTGTACTTTGGTAACCA
25323777 -TGAAT
1 TTGAAT
25323782 CAAATAATAA
Statistics
Matches: 112, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
119 1 0.01
120 106 0.95
121 5 0.04
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (121 bp):
TTGAATGCACATACGTACCCCTATTTCTACTTCTGTACCCATGAATACACATACGTGCCCCTATT
TGTACTTCAGTACCCCTGAATGCACATAAGTGCCCTTATTTGTACTTTGGTAACCA
Found at i:25323781 original size:40 final size:40
Alignment explanation
Indices: 25323537--25323781 Score: 269
Period size: 40 Copynumber: 6.1 Consensus size: 40
25323527 AATTATTGTT
* * *
25323537 TGAATGCACATACGTG-CCTCTATTTCTACTTCTGTACCCT
1 TGAATGCACATACGTGCCCT-TATTTGTACTTCGGTACCCA
* * *
25323577 TGAATACACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCTTATTTGTACTTCGGTACCCA
* * * *
25323617 TGAATGCACATAAGTGCCCTTATTTTTACTTTGG-AACCA
1 TGAATGCACATACGTGCCCTTATTTGTACTTCGGTACCCA
* * *
25323656 TTGAATGCACATACGTACCCCTATTTGTACTTCGATACCCA
1 -TGAATGCACATACGTGCCCTTATTTGTACTTCGGTACCCA
* * * *
25323697 TGAATGCACATATGTTCCCTTATTTGTACTTCAGTACCCC
1 TGAATGCACATACGTGCCCTTATTTGTACTTCGGTACCCA
* * * *
25323737 TGAATGCACATATGTGCCCTTGTTTGTACTTTGGTAACCA
1 TGAATGCACATACGTGCCCTTATTTGTACTTCGGTACCCA
25323777 TGAAT
1 TGAAT
25323782 CAAATAATAA
Statistics
Matches: 171, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
39 3 0.02
40 162 0.95
41 6 0.04
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCTTATTTGTACTTCGGTACCCA
Found at i:25333807 original size:33 final size:33
Alignment explanation
Indices: 25333770--25333847 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
25333760 GCCAATCCAT
25333770 CCATCACACCAATGCTCATAAGAGCTAAACCAA
1 CCATCACACCAATGCTCATAAGAGCTAAACCAA
** * *
25333803 CCATCACAATAATGCTTATAAGAGCTAATCCAA
1 CCATCACACCAATGCTCATAAGAGCTAAACCAA
25333836 CCGA-CACACCAA
1 CC-ATCACACCAA
25333848 AAAGAGAGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 37 0.97
34 1 0.03
ACGTcount: A:0.42, C:0.32, G:0.09, T:0.17
Consensus pattern (33 bp):
CCATCACACCAATGCTCATAAGAGCTAAACCAA
Found at i:25341488 original size:190 final size:190
Alignment explanation
Indices: 25341246--25341623 Score: 531
Period size: 190 Copynumber: 2.0 Consensus size: 190
25341236 TTATGAACAA
* *
25341246 TAAGTTATGAATAAGAGGCCCTGCATGGGGGTCATTTGTATTTGAGATGTTAGCAATTTGTTTGT
1 TAAGTTATGAATAAGAGGCCCTGCATGGGGATCATCTGTATTTGAGATGTTAGCAATTTGTTTGT
* * * * * * * **
25341311 AAATGGGTTTTAATGATGGTTCCAAGTTTTTTCAGTAATTATTGCTGGTTCGAGATGAGTGTTTG
66 AAATAGGTCTTAATGATGGTTCCAAGTTCTTTAAGCAATTATTACTGGTTCGAGAAGAGTGTTCA
* * ** * * * *
25341376 AGTTTGGAGCTTCAAGATGTAGTATATGTGAGTATCAGGTGGGTCTCTATCTTGGCTCAG
131 AGTTTAGAGCTACAAGATACAATATAAGTGAGTATCAGGTGAGTCTCTAACTTGGCTCAG
*
25341436 TAAGTTCTGAATAAGAGGCCCTGCATGGGGATCATCTGTATTTGAGATGTTAGCAATTTGTTTGT
1 TAAGTTATGAATAAGAGGCCCTGCATGGGGATCATCTGTATTTGAGATGTTAGCAATTTGTTTGT
* * *
25341501 AAATAGGTCTTAATGATGGTTCCATGTTCTTTAAGCAGTTGTTACTGGTTCGAGAAGAGTGTTCA
66 AAATAGGTCTTAATGATGGTTCCAAGTTCTTTAAGCAATTATTACTGGTTCGAGAAGAGTGTTCA
* *
25341566 AGTTTAGAGCTACAAGCTACAATATAAGTGAGTATTAGGTGAGTCTCTAACTTGGCTC
131 AGTTTAGAGCTACAAGATACAATATAAGTGAGTATCAGGTGAGTCTCTAACTTGGCTC
25341624 CTGCATGTGA
Statistics
Matches: 163, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
190 163 1.00
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.37
Consensus pattern (190 bp):
TAAGTTATGAATAAGAGGCCCTGCATGGGGATCATCTGTATTTGAGATGTTAGCAATTTGTTTGT
AAATAGGTCTTAATGATGGTTCCAAGTTCTTTAAGCAATTATTACTGGTTCGAGAAGAGTGTTCA
AGTTTAGAGCTACAAGATACAATATAAGTGAGTATCAGGTGAGTCTCTAACTTGGCTCAG
Found at i:25347185 original size:51 final size:50
Alignment explanation
Indices: 25347071--25347259 Score: 231
Period size: 51 Copynumber: 3.7 Consensus size: 50
25347061 AGGTGGAAGT
* * * * * *
25347071 AGTGGCAGTATATCTGCAAATTAGGGGTGGCTTGTCCACAAAA-T-TTATT
1 AGTGGTAGT-TATCTTCAAATCAGTGGTGGCTTGTCCATAAAAGTGTTATC
* *
25347120 AGTGGTAGTATATCTGT-ATATCAGTGGTGGGTTGTCCATAAAAGTGTTATC
1 AGTGGTAGT-TATCT-TCAAATCAGTGGTGGCTTGTCCATAAAAGTGTTATC
*
25347171 AGTGGTAGCTTATCTTCAAATCAGTGGTGGGTTGTCCATAAAAGTGTTATC
1 AGTGGTAG-TTATCTTCAAATCAGTGGTGGCTTGTCCATAAAAGTGTTATC
25347222 AGTGGTAGTTTATCTTCAAATCAGTGGTGGCTTGTCCA
1 AGTGGTAG-TTATCTTCAAATCAGTGGTGGCTTGTCCA
25347260 CAAATGGTGT
Statistics
Matches: 124, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
49 35 0.28
50 2 0.02
51 86 0.69
52 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.35
Consensus pattern (50 bp):
AGTGGTAGTTATCTTCAAATCAGTGGTGGCTTGTCCATAAAAGTGTTATC
Found at i:25347623 original size:29 final size:27
Alignment explanation
Indices: 25347591--25347648 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 27
25347581 TTCATGATTC
25347591 TGGAC-TTATATTTTATTTTGGGTCTTTTA
1 TGGACTTTATA-TTTA-TTTGGG-CTTTTA
25347620 TGGACTTTATGATTTATTTGGGCTTTTA
1 TGGACTTTAT-ATTTATTTGGGCTTTTA
25347648 T
1 T
25347649 TTTTTAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
28 7 0.26
29 11 0.41
30 8 0.30
31 1 0.04
ACGTcount: A:0.17, C:0.07, G:0.19, T:0.57
Consensus pattern (27 bp):
TGGACTTTATATTTATTTGGGCTTTTA
Found at i:25354349 original size:23 final size:22
Alignment explanation
Indices: 25354306--25354364 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 22
25354296 TTGTTTTGAT
25354306 ATTGTTCTTGATTTGTTCTGGAA
1 ATTGTTCTTGA-TTGTTCTGGAA
25354329 ATTGTT-TTGATTGTCTGCTGGAA
1 ATTGTTCTTGATTGT-T-CTGGAA
25354352 ATTGTTCTTGATT
1 ATTGTTCTTGATT
25354365 TGTTAGTCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.12
22 5 0.15
23 18 0.55
24 6 0.18
ACGTcount: A:0.17, C:0.08, G:0.22, T:0.53
Consensus pattern (22 bp):
ATTGTTCTTGATTGTTCTGGAA
Found at i:25355212 original size:31 final size:31
Alignment explanation
Indices: 25355174--25355237 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
25355164 CCATCATTCT
* * *
25355174 TTATTAAACCAAATCGTCATTCTTTATTTTA
1 TTATTAAACCAAACCCTCATTATTTATTTTA
25355205 TTATTAAACCAAACCCTCATTATTTATTTTA
1 TTATTAAACCAAACCCTCATTATTTATTTTA
25355236 TT
1 TT
25355238 TATTTTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.02, T:0.48
Consensus pattern (31 bp):
TTATTAAACCAAACCCTCATTATTTATTTTA
Found at i:25355323 original size:37 final size:37
Alignment explanation
Indices: 25355280--25355368 Score: 169
Period size: 37 Copynumber: 2.4 Consensus size: 37
25355270 ATCATAAATA
25355280 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
*
25355317 ATTAAACTAATCAATGTTAAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
25355354 AATAAACTAATCAAT
1 AATAAACTAATCAAT
25355369 ATATTTATAC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (37 bp):
AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
Found at i:25355476 original size:33 final size:33
Alignment explanation
Indices: 25355438--25355501 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
25355428 TCATTATTAA
25355438 ACCAACAATTAATTTTAGGTCAATTATACATAT
1 ACCAACAATTAATTTTAGGTCAATTATACATAT
25355471 ACCAACAATTAATTTTAGGTCAATTATACAT
1 ACCAACAATTAATTTTAGGTCAATTATACAT
25355502 GCTTTATAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (33 bp):
ACCAACAATTAATTTTAGGTCAATTATACATAT
Found at i:25357101 original size:11 final size:11
Alignment explanation
Indices: 25357085--25357111 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
25357075 TAGAAATTAG
25357085 TTTGTGAAACT
1 TTTGTGAAACT
25357096 TTTGTGAAACT
1 TTTGTGAAACT
25357107 TTTGT
1 TTTGT
25357112 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:25358810 original size:40 final size:40
Alignment explanation
Indices: 25358766--25359027 Score: 310
Period size: 39 Copynumber: 6.7 Consensus size: 40
25358756 GCTCCTCGTT
* *
25358766 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
25358806 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
25358846 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
25358885 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
25358924 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
25358963 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
25359004 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25359028 CATCATTCAA
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 123 0.62
40 63 0.32
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:25366837 original size:40 final size:40
Alignment explanation
Indices: 25366793--25367054 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
25366783 GCTCCTCGTT
* *
25366793 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
25366833 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
25366873 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
25366912 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
25366951 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
25366990 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
25367031 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25367055 CATCATTCAA
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 125 0.62
40 63 0.31
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:25367048 original size:118 final size:119
Alignment explanation
Indices: 25366793--25367054 Score: 326
Period size: 118 Copynumber: 2.2 Consensus size: 119
25366783 GCTCCTCGTT
* *
25366793 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCA
*
25366857 GATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGTA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTC-TA
*
25366912 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
* * * *
25366973 GGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CT-TA
65 AGAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATCTCTA
25367028 GCACAA-GCCTTCGGGACTTAGCCCGGA
1 -CA-AATGCCTTCGGGACTTAGCCCGGA
25367055 CATCATTCAA
Statistics
Matches: 127, Mismatches: 8, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
116 2 0.02
117 47 0.37
118 59 0.46
119 19 0.15
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCA
GAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCTA
Found at i:25369899 original size:44 final size:44
Alignment explanation
Indices: 25369772--25369979 Score: 129
Period size: 44 Copynumber: 4.6 Consensus size: 44
25369762 TTGATTTTAG
*
25369772 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTA
1 TAAATTCATATAAGAA-AATTTATTATTAAGAATTTTA-GAAATTA
* * * * ** *
25369818 TATA-TCATTATTAGATTATATTTAATATTAATTATTTTA-AATTGTA
1 TAAATTCA-TATAAGA--AAATTTATTATTAAGAATTTTAGAAAT-TA
*
25369864 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTA
1 TAAATTCATATAAGAAAATTTATTATTAAGAATTTTA-GAAATTA
* ** * * **
25369909 TATATT-AT-T-ATTAAATTATATGTAATAATAATTATTTTAAATTA
1 TAAATTCATATAAGAAAATT-TAT-TATTAAGAATT-TTAGAAATTA
25369953 TACAAATTCATATAAGAAAATTTATTA
1 T--AAATTCATATAAGAAAATTTATTA
25369980 GTTATAATTA
Statistics
Matches: 120, Mismatches: 27, Indels: 29
0.68 0.15 0.16
Matches are distributed among these distances:
42 6 0.05
43 4 0.03
44 34 0.28
45 15 0.12
46 27 0.22
47 23 0.19
48 5 0.04
49 6 0.05
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (44 bp):
TAAATTCATATAAGAAAATTTATTATTAAGAATTTTAGAAATTA
Found at i:25369919 original size:91 final size:91
Alignment explanation
Indices: 25369772--25369979 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
25369762 TTGATTTTAG
* * *
25369772 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAGATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
25369837 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
25369864 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
25369929 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
*
25369955 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
25369980 GTTATAATTA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 92 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:25369948 original size:26 final size:28
Alignment explanation
Indices: 25369894--25369954 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
25369884 TATTATCAAG
* *
25369894 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
25369922 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
25369948 AATTATA
1 AATTATA
25369955 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:25370072 original size:59 final size:56
Alignment explanation
Indices: 25370006--25370314 Score: 175
Period size: 59 Copynumber: 5.2 Consensus size: 56
25369996 ATTTTATTAA
25370006 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTA-TT-AAATTAT-TTTTATAGT
* * * *
25370065 ATCATATATTATGATTTGAGTAAATTCATATAATAATATTAATTATTAAGA--A-TTTTATTA-A
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTAA-ATTATTTTTA-TAGT
* * *
25370126 ATTATATATTTTAATTAAAATATATTTAATAATAATTACGTTAATTTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTA--TTAAATTAT-TTTTATAGT
* * ** *
25370185 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA--A-TTTTATTA-A
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTAA-ATTATTTTTA-TAGT
* * * *
25370246 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTA--TTAAATTAT-TTTTATAGT
25370305 ATCATATATT
1 ATCATATATT
25370315 ATGATTTGAG
Statistics
Matches: 189, Mismatches: 29, Indels: 64
0.67 0.10 0.23
Matches are distributed among these distances:
54 21 0.11
55 8 0.04
56 10 0.05
57 7 0.04
58 4 0.02
59 40 0.21
60 16 0.08
61 30 0.16
62 4 0.02
63 8 0.04
64 8 0.04
65 11 0.06
66 22 0.12
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (56 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTAAATTATTTTTATAGT
Found at i:25370144 original size:18 final size:17
Alignment explanation
Indices: 25370116--25370150 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
25370106 ATTATTAAGA
*
25370116 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
25370133 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
25370151 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:25370275 original size:15 final size:15
Alignment explanation
Indices: 25370240--25370291 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
25370230 TTAAGAATTT
*
25370240 TATTAAATTAT-ATA
1 TATTTAATTATAATA
25370254 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
25370268 TATTTAATAATAAT-
1 TATTTAATTATAATA
25370282 TATGTTAATT
1 TAT-TTAATT
25370292 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:25370373 original size:61 final size:61
Alignment explanation
Indices: 25370068--25370375 Score: 242
Period size: 61 Copynumber: 5.1 Consensus size: 61
25370058 TTATAGTATC
*
25370068 ATATATTATGATTTGAGTAAATTCATATAATAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAATAATATTGATTATTAAGAATTTTATTAAATT
* * ** * * * * * ** * *
25370129 ATATATTTTAATTAAAATATATTTA-ATAATAAT-TACG-TTAATTTA-TCTTTTA-TAGTATC
1 ATATATTATGATTTGAGTAAATTCATATAATAATAT-TGATT-ATTAAGAATTTTATTA-AATT
* *
25370188 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAATAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * *
25370249 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAATAATAT-TGATT-ATTAAGAATTTTATTA-AATT
*
25370308 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAATAATATTGATTATTAAGAATTTTATTAAATT
25370369 ATATATT
1 ATATATT
25370376 TTAATTATAA
Statistics
Matches: 179, Mismatches: 50, Indels: 36
0.68 0.19 0.14
Matches are distributed among these distances:
58 5 0.03
59 57 0.32
60 48 0.27
61 64 0.36
62 5 0.03
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAATAATATTGATTATTAAGAATTTTATTAAATT
Found at i:25370390 original size:16 final size:16
Alignment explanation
Indices: 25370369--25370410 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
25370359 TTATTAAATT
*
25370369 ATATATTTTAATTATA
1 ATATATTTTAATAATA
25370385 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
25370400 AT-TATGTTTAA
1 ATATAT-TTTAA
25370411 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:25370395 original size:15 final size:15
Alignment explanation
Indices: 25370360--25370401 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25370350 TTAAGAATTT
*
25370360 TATTAAATTAT-ATA
1 TATTTAATTATAATA
25370374 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
25370388 TATTTAATAATAAT
1 TATTTAATTATAAT
25370402 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:25370405 original size:120 final size:120
Alignment explanation
Indices: 25369995--25370407 Score: 729
Period size: 120 Copynumber: 3.4 Consensus size: 120
25369985 AATTATTTTA
* * *
25369995 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AATTTATCTTT
*
25370059 TATAGTATCATATATTATGATTTGAGTAAATTCATATAATAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
25370115 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTACGTTAATTTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATCTTTT
25370180 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
25370235 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATCTTTT
*
25370300 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
25370355 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
25370408 TAAATATGAT
Statistics
Matches: 283, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
120 281 0.99
121 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATCTTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:25370635 original size:16 final size:16
Alignment explanation
Indices: 25370610--25370647 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
25370600 TTGATTTGTT
25370610 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
25370626 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
25370642 AATACA
1 ATTACA
25370648 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.34, G:0.03, T:0.34
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Done.