Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 91 of 214
Found at i:25962999 original size:21 final size:21
Alignment explanation
Indices: 25962954--25963016 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
25962944 TTTGAACCAT
* *
25962954 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
25962976 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
25962997 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
25963017 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:25963379 original size:17 final size:16
Alignment explanation
Indices: 25963357--25963399 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
25963347 AAAAAAAATT
*
25963357 AAAAAAAATTGAAAGG
1 AAAAAAAATTGAAAAG
25963373 AAAAAAAATTGAAAAG
1 AAAAAAAATTGAAAAG
25963389 AAAAAAAATTG
1 AAAAAAAATTG
25963400 CATACGGTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (16 bp):
AAAAAAAATTGAAAAG
Found at i:25966929 original size:20 final size:20
Alignment explanation
Indices: 25966904--25966948 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
25966894 GCGAAAATAC
*
25966904 AAAAGAAAAGAAAAATGAAA
1 AAAAGAAAAGAAAAATCAAA
*
25966924 AAAAG-AAAGAAAATTCAAA
1 AAAAGAAAAGAAAAATCAAA
25966943 AAAAGA
1 AAAAGA
25966949 GAATGAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.78, C:0.02, G:0.13, T:0.07
Consensus pattern (20 bp):
AAAAGAAAAGAAAAATCAAA
Found at i:25978351 original size:20 final size:20
Alignment explanation
Indices: 25978317--25978354 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25978307 TTGAGCTGAA
*
25978317 TTGAGCTTGAATGAGTTGAC
1 TTGAGCTCGAATGAGTTGAC
*
25978337 TTGAGCTCGAGTGAGTTG
1 TTGAGCTCGAATGAGTTG
25978355 GAAACAAGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.11, G:0.34, T:0.34
Consensus pattern (20 bp):
TTGAGCTCGAATGAGTTGAC
Found at i:25979295 original size:8 final size:9
Alignment explanation
Indices: 25979281--25979305 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
25979271 AAATTTTGAA
25979281 AAAAAAATT
1 AAAAAAATT
25979290 AAAAAAATT
1 AAAAAAATT
25979299 AAAAAAA
1 AAAAAAA
25979306 GGGATTTCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (9 bp):
AAAAAAATT
Found at i:25987523 original size:10 final size:10
Alignment explanation
Indices: 25987508--25987569 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
25987498 TTTGAACCGT
*
25987508 TACCAATTCG
1 TACCAATTCA
*
25987518 TACCAAATACCA
1 TACC-AAT-TCA
*
25987530 TACCATTTCA
1 TACCAATTCA
25987540 TACCAATTCCA
1 TACCAATT-CA
* *
25987551 TACCATTTCG
1 TACCAATTCA
25987561 TACCAATTC
1 TACCAATTC
25987570 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:25987553 original size:21 final size:21
Alignment explanation
Indices: 25987508--25987570 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
25987498 TTTGAACCGT
* *
25987508 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
25987530 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
25987551 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
25987571 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:25989568 original size:14 final size:14
Alignment explanation
Indices: 25989537--25989581 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
25989527 TTCGTTTCTT
*
25989537 TCTTTTTCTTTTCAC
1 TCTTTTTCTTTT-TC
*
25989552 TCTTTTTGTTTTTC
1 TCTTTTTCTTTTTC
25989566 TCTTTTTCTTTTTC
1 TCTTTTTCTTTTTC
25989580 TC
1 TC
25989582 GCTCAATAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.73
Consensus pattern (14 bp):
TCTTTTTCTTTTTC
Found at i:25996285 original size:30 final size:30
Alignment explanation
Indices: 25996251--25996321 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
25996241 CTAGCATCCT
* *
25996251 CATTCAGCTCCCTAAATACATACATGCCTC
1 CATTCAGCTCCCTAAACACATACATGCATC
* * *
25996281 CATTCAGCTCCTTAAACACATCCATGCATT
1 CATTCAGCTCCCTAAACACATACATGCATC
*
25996311 AATTCAGCTCC
1 CATTCAGCTCC
25996322 ATATGCACAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.30, C:0.35, G:0.07, T:0.28
Consensus pattern (30 bp):
CATTCAGCTCCCTAAACACATACATGCATC
Found at i:26000320 original size:40 final size:40
Alignment explanation
Indices: 26000222--26000524 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
26000212 TCCTCGTTCA
* * * * *
26000222 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
26000261 AATGCCTTCGGGACATAACCCAGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
26000301 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26000341 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26000381 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
26000421 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
26000461 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
26000501 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26000525 CAGCATTCAA
Statistics
Matches: 238, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 36 0.15
40 194 0.82
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:26000533 original size:41 final size:41
Alignment explanation
Indices: 26000456--26000533 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
26000446 TTAGTATCTC
* * *
26000456 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
26000497 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
26000534 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:26002718 original size:30 final size:30
Alignment explanation
Indices: 26002684--26002754 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
26002674 CTAGCATCCT
* *
26002684 CATTCAGCTCCCTAAATACATACATGCCTC
1 CATTCAGCTCCCTAAACACATACATGCATC
* * *
26002714 CATTCAGCTCCTTAAACACATCCATGCATT
1 CATTCAGCTCCCTAAACACATACATGCATC
*
26002744 AATTCAGCTCC
1 CATTCAGCTCC
26002755 ATATGCACAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.30, C:0.35, G:0.07, T:0.28
Consensus pattern (30 bp):
CATTCAGCTCCCTAAACACATACATGCATC
Found at i:26007625 original size:19 final size:18
Alignment explanation
Indices: 26007589--26007628 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26007579 TTTTCACTCG
*
26007589 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
26007607 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
26007626 TTT
1 TTT
26007629 GTTTGTTGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:26008707 original size:12 final size:13
Alignment explanation
Indices: 26008689--26008723 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
26008679 ACTAGCTCTC
*
26008689 TTTTTTTTCACAAT
1 TTTTTTTTCA-AAA
26008703 TTTTTTTTCAAAA
1 TTTTTTTTCAAAA
26008716 TTTTTTTT
1 TTTTTTTT
26008724 TCACAACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTTTTTCAAAA
Found at i:26008708 original size:14 final size:14
Alignment explanation
Indices: 26008689--26008729 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
26008679 ACTAGCTCTC
26008689 TTTTTTTTCACAAT
1 TTTTTTTTCACAAT
*
26008703 TTTTTTTTCAAAAT
1 TTTTTTTTCACAAT
26008717 TTTTTTTTCACAA
1 TTTTTTTTCACAA
26008730 CTTGATATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTTTTTCACAAT
Found at i:26008785 original size:12 final size:12
Alignment explanation
Indices: 26008768--26008812 Score: 58
Period size: 11 Copynumber: 3.9 Consensus size: 12
26008758 GGAAACTAGT
26008768 TTTTTTTTCGAA
1 TTTTTTTTCGAA
*
26008780 -TTTTTTTCAAA
1 TTTTTTTTCGAA
*
26008791 TTTTTTTT-GAG
1 TTTTTTTTCGAA
26008802 TTTTTTTTCGA
1 TTTTTTTTCGA
26008813 GAAACTACTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.16, C:0.07, G:0.09, T:0.69
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:26026475 original size:20 final size:20
Alignment explanation
Indices: 26026450--26026504 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
26026440 AAATGAATTA
26026450 AAATGAGCTGAATGAGCTAG
1 AAATGAGCTGAATGAGCTAG
*
26026470 AAATGAGCTCG-TTGAGCTAG
1 AAATGAGCT-GAATGAGCTAG
**
26026490 AGTTGAGCTGAATGA
1 AAATGAGCTGAATGA
26026505 CCTTGAAGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.03
20 27 0.93
21 1 0.03
ACGTcount: A:0.35, C:0.11, G:0.31, T:0.24
Consensus pattern (20 bp):
AAATGAGCTGAATGAGCTAG
Found at i:26032858 original size:20 final size:20
Alignment explanation
Indices: 26032833--26032874 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
26032823 AAATGCATAG
26032833 ATAATCTCAATAATTAAGGC
1 ATAATCTCAATAATTAAGGC
26032853 ATAATCTCAATAATTAAGGC
1 ATAATCTCAATAATTAAGGC
26032873 AT
1 AT
26032875 GACCACTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (20 bp):
ATAATCTCAATAATTAAGGC
Found at i:26035788 original size:9 final size:9
Alignment explanation
Indices: 26035774--26035810 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
26035764 TATAGTTTGA
26035774 TATTCGAAT
1 TATTCGAAT
26035783 TATTCGAAT
1 TATTCGAAT
26035792 TATTC-AAGT
1 TATTCGAA-T
26035801 TATTCGAAT
1 TATTCGAAT
26035810 T
1 T
26035811 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26036608 original size:24 final size:24
Alignment explanation
Indices: 26036543--26036594 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
26036533 GTGATCATCG
*
26036543 TCTTCATCTTCATCTCAACCCTCA
1 TCTTCATCTTCATCTCCACCCTCA
26036567 TCTTCATCTTCATCTCCACCCTCA
1 TCTTCATCTTCATCTCCACCCTCA
26036591 TCTT
1 TCTT
26036595 TGTCTTCGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.17, C:0.42, G:0.00, T:0.40
Consensus pattern (24 bp):
TCTTCATCTTCATCTCCACCCTCA
Found at i:26046082 original size:5 final size:5
Alignment explanation
Indices: 26046072--26046133 Score: 58
Period size: 5 Copynumber: 12.6 Consensus size: 5
26046062 TTGGTGTCCT
* *
26046072 TTTTC TTTTC TTTTC TTTTC -TTTC -TTTC -TTTC TTTTTT TTTTC TTTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTTC
*
26046120 TTTTG TTTTGC TTT
1 TTTTC TTTT-C TTT
26046134 ATTTTTTCCT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
4 12 0.24
5 31 0.63
6 6 0.12
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:26046099 original size:23 final size:23
Alignment explanation
Indices: 26046073--26046133 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
26046063 TGGTGTCCTT
26046073 TTTCTTT-TCTTTTCTTTTCTTTC
1 TTTCTTTCT-TTTTCTTTTCTTTC
*
26046096 TTTCTTTCTTTTTTTTTTCTTT-
1 TTTCTTTCTTTTTCTTTTCTTTC
* *
26046118 TTT-TTTGTTTTGCTTT
1 TTTCTTTCTTTTTCTTT
26046134 ATTTTTTCCT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 10 0.30
22 3 0.09
23 19 0.58
24 1 0.03
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (23 bp):
TTTCTTTCTTTTTCTTTTCTTTC
Found at i:26052575 original size:27 final size:27
Alignment explanation
Indices: 26052542--26052616 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
26052532 ATTATGACCA
26052542 CCAGTAGGTTTGGCAAGCTAGAGTTCG
1 CCAGTAGGTTTGGCAAGCTAGAGTTCG
* * *
26052569 CCAGTAGGTTTGGCGAGTTAAAGTTCG
1 CCAGTAGGTTTGGCAAGCTAGAGTTCG
* *
26052596 CCAGAAGGCTTGGCAAGCTAG
1 CCAGTAGGTTTGGCAAGCTAG
26052617 TATTCACCTA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (27 bp):
CCAGTAGGTTTGGCAAGCTAGAGTTCG
Found at i:26052688 original size:27 final size:28
Alignment explanation
Indices: 26052627--26052688 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
26052617 TATTCACCTA
26052627 GTAGGTCTGACAAGACGGTGTATGCCAG
1 GTAGGTCTGACAAGACGGTGTATGCCAG
* * * *
26052655 G-AAGTCTGGCAAGATGGTGTATGTC-G
1 GTAGGTCTGACAAGACGGTGTATGCCAG
26052681 GTAGGTCT
1 GTAGGTCT
26052689 AGCGAACTAG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 25 0.89
28 1 0.04
ACGTcount: A:0.23, C:0.15, G:0.37, T:0.26
Consensus pattern (28 bp):
GTAGGTCTGACAAGACGGTGTATGCCAG
Found at i:26062657 original size:14 final size:13
Alignment explanation
Indices: 26062638--26062689 Score: 86
Period size: 13 Copynumber: 3.9 Consensus size: 13
26062628 ACTAGCTCTC
26062638 TTTTTTTCACAAT
1 TTTTTTTCACAAT
26062651 TTTTTTTCACAATT
1 TTTTTTTCACAA-T
*
26062665 TTTTTTTCAAAAT
1 TTTTTTTCACAAT
26062678 TTTTTTTCACAA
1 TTTTTTTCACAA
26062690 CTTGATATCC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
13 24 0.67
14 12 0.33
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTTTTCACAAT
Found at i:26062678 original size:27 final size:27
Alignment explanation
Indices: 26062638--26062689 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
26062628 ACTAGCTCTC
*
26062638 TTTTTTTCACAATTTTTTTTCACAATT
1 TTTTTTTCAAAATTTTTTTTCACAATT
26062665 TTTTTTTCAAAATTTTTTTTCACAA
1 TTTTTTTCAAAATTTTTTTTCACAA
26062690 CTTGATATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.00, T:0.62
Consensus pattern (27 bp):
TTTTTTTCAAAATTTTTTTTCACAATT
Found at i:26062747 original size:12 final size:12
Alignment explanation
Indices: 26062730--26062761 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26062720 AAACCAAATT
26062730 TTTTTTTTGGAA
1 TTTTTTTTGGAA
*
26062742 TTTTTTTTTGAA
1 TTTTTTTTGGAA
26062754 TTTTTTTT
1 TTTTTTTT
26062762 CAAGTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (12 bp):
TTTTTTTTGGAA
Found at i:26062747 original size:13 final size:12
Alignment explanation
Indices: 26062729--26062774 Score: 58
Period size: 13 Copynumber: 3.8 Consensus size: 12
26062719 GAAACCAAAT
26062729 TTTTTTTTTGGAA
1 TTTTTTTTT-GAA
26062742 TTTTTTTTTGAA
1 TTTTTTTTTGAA
*
26062754 -TTTTTTTTCAA
1 TTTTTTTTTGAA
26062765 GTTTTTTTTT
1 -TTTTTTTTT
26062775 CGAGAAACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 10 0.33
12 3 0.10
13 17 0.57
ACGTcount: A:0.13, C:0.02, G:0.09, T:0.76
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:26065820 original size:27 final size:22
Alignment explanation
Indices: 26065765--26065810 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
26065755 CAGCTAAATT
26065765 ATATGTCTGATTGGATTGCTTA
1 ATATGTCTGATTGGATTGCTTA
26065787 ATATGTCTGATTGGATTGCTTA
1 ATATGTCTGATTGGATTGCTTA
26065809 AT
1 AT
26065811 TAATTTTGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.46
Consensus pattern (22 bp):
ATATGTCTGATTGGATTGCTTA
Found at i:26066054 original size:18 final size:18
Alignment explanation
Indices: 26066017--26066054 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26066007 TGCTGGAATA
*
26066017 AATTAATTAAGTTAGTTT
1 AATTAATTAAGTTAGCTT
26066035 AATTAATTAA-TTCAGCTT
1 AATTAATTAAGTT-AGCTT
26066053 AA
1 AA
26066055 ATAAATGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (18 bp):
AATTAATTAAGTTAGCTT
Found at i:26067369 original size:11 final size:11
Alignment explanation
Indices: 26067353--26067384 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
26067343 ATAGGTTTGT
*
26067353 AAAAAAAATTG
1 AAAAAAAATTA
26067364 AAAAAAAATTA
1 AAAAAAAATTA
26067375 AAAAAAAATT
1 AAAAAAAATT
26067385 TCGTGAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (11 bp):
AAAAAAAATTA
Found at i:26072466 original size:24 final size:25
Alignment explanation
Indices: 26072434--26072483 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
26072424 TTTTTGTTTA
*
26072434 ATTGGGTCT-TAT-TTTAGACACATT
1 ATTGGGTCTAT-TGTTTAGACAAATT
*
26072458 ATTGTGTCTATTGTTTAGACAAATT
1 ATTGGGTCTATTGTTTAGACAAATT
26072483 A
1 A
26072484 ACTATTTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.28, C:0.10, G:0.16, T:0.46
Consensus pattern (25 bp):
ATTGGGTCTATTGTTTAGACAAATT
Found at i:26083748 original size:40 final size:40
Alignment explanation
Indices: 26083701--26083968 Score: 459
Period size: 40 Copynumber: 6.8 Consensus size: 40
26083691 CCGCAAACAT
* * *
26083701 ATTGCCTTCGGGTCTTAACCCGGACATATGAACTCGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
*
26083741 ATTGCCTTCGGGTCTTAGCCCGGATATATCATC-CGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
* *
26083780 ATTGCCTTCGGGTCATAGCCCGGATATATCAATTCGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
*
26083820 ATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
26083860 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
26083900 ATTGCCTTCGGGTCTTAGCCC-GATATATCAACTCGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
26083939 ATTGCCTTCGGGTCTTAGCCCGGATATATC
1 ATTGCCTTCGGGTCTTAGCCCGGATATATC
26083969 CAATGTCATG
Statistics
Matches: 215, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 75 0.35
40 140 0.65
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (40 bp):
ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
Found at i:26083802 original size:79 final size:80
Alignment explanation
Indices: 26083701--26083968 Score: 459
Period size: 79 Copynumber: 3.4 Consensus size: 80
26083691 CCGCAAACAT
* * *
26083701 ATTGCCTTCGGGTCTTAACCCGGACATATGAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
*
26083766 ATATCATC-CGCATA
66 ATATCAACTCGCATA
* *
26083780 ATTGCCTTCGGGTCATAGCCCGGATATATCAATTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
*
26083845 ATGTCAACTCGCATA
66 ATATCAACTCGCATA
26083860 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCC-GAT
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
26083924 ATATCAACTCGCATA
66 ATATCAACTCGCATA
26083939 ATTGCCTTCGGGTCTTAGCCCGGATATATC
1 ATTGCCTTCGGGTCTTAGCCCGGATATATC
26083969 CAATGTCATG
Statistics
Matches: 178, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
79 113 0.63
80 65 0.37
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (80 bp):
ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
ATATCAACTCGCATA
Found at i:26083858 original size:119 final size:119
Alignment explanation
Indices: 26083701--26083968 Score: 457
Period size: 119 Copynumber: 2.3 Consensus size: 119
26083691 CCGCAAACAT
* * *
26083701 ATTGCCTTCGGGTCTTAACCCGGACATATGAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
* *
26083766 ATATCATC-CGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAATTCGCATA
66 ATATCAACTCGCATAATTGCCTTCGGGTCATAGCCC-GATATATCAACTCGCATA
*
26083820 ATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
*
26083885 ATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGATATATCAACTCGCATA
66 ATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGATATATCAACTCGCATA
26083939 ATTGCCTTCGGGTCTTAGCCCGGATATATC
1 ATTGCCTTCGGGTCTTAGCCCGGATATATC
26083969 CAATGTCATG
Statistics
Matches: 140, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
119 114 0.81
120 26 0.19
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (119 bp):
ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
ATATCAACTCGCATAATTGCCTTCGGGTCATAGCCCGATATATCAACTCGCATA
Found at i:26092240 original size:40 final size:40
Alignment explanation
Indices: 26092187--26092458 Score: 463
Period size: 40 Copynumber: 6.8 Consensus size: 40
26092177 CAGCCGCAAA
* * * *
26092187 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
26092227 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
26092267 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAATTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
26092307 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
26092347 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
26092387 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
26092427 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATA
26092459 ATCCAATGTT
Statistics
Matches: 218, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:26120694 original size:20 final size:20
Alignment explanation
Indices: 26120669--26120713 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
26120659 TAAATACACA
26120669 TAATTAAAACT-AGACACAAT
1 TAATT-AAACTAAGACACAAT
**
26120689 TAATTAAGTTAAGACACAAT
1 TAATTAAACTAAGACACAAT
26120709 TAATT
1 TAATT
26120714 CGGTTGGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (20 bp):
TAATTAAACTAAGACACAAT
Found at i:26124804 original size:12 final size:12
Alignment explanation
Indices: 26124787--26124854 Score: 109
Period size: 12 Copynumber: 5.7 Consensus size: 12
26124777 GTAGTTTCTC
* *
26124787 AAAAAAAACTCG
1 AAAAAAAATTCA
26124799 AAAAAAAATTCA
1 AAAAAAAATTCA
*
26124811 AAAAAAAATTCG
1 AAAAAAAATTCA
26124823 AAAAAAAATTCA
1 AAAAAAAATTCA
26124835 AAAAAAAATTCA
1 AAAAAAAATTCA
26124847 AAAAAAAA
1 AAAAAAAA
26124855 ATGGTTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 52 1.00
ACGTcount: A:0.75, C:0.09, G:0.03, T:0.13
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:26133401 original size:823 final size:823
Alignment explanation
Indices: 26131636--26133759 Score: 2932
Period size: 823 Copynumber: 2.6 Consensus size: 823
26131626 ACTCGTATCA
* * *
26131636 CTTTCCTTTAATTTGCAGGTTGATTCTTGTCTGTTTGTTTCTAATATTTTATTTCTTTACTTCCA
1 CTTTCCTTTAATTTGTA-GTTGATTCTTGTCTGTTTGTTTCTAATCTTTTATTTCTTTACTTCTA
*
26131701 TATCAGGAATCAACAAGAAAAGACATTCTCCC-TCATTAATACACCAAGAACCATTGAAAACAAG
65 TATCAGGAATCAACAAGAAAAGACGTTCTCCCTTC-TTAATACACCAAGAACCATTGAAAACAAG
* * *
26131765 GAAGTCTCTTCTTTTCTTATTGAGGCGATTGCTTTTATCACAAAACAATTTTATTATGGCTTAAA
129 GAAGTCTCTTCTTTTCTTATTGTGCCGATTGCTTTTATCACAAAAAAATTTTATTATGGCTTAAA
* * * * * * *
26131830 AATCCATTCTGACAATCTGTTTTCTTCTTTTGGTTCTAGATATAGTTTGAGGCCATATTTTGGTT
194 AATCCATTCTGACAATCTGTTTTCTTCTTTCGATTCCAGATCTAGTTTGAAGCCTTCTTTTGGTT
* * *
26131895 TAAGAATGGTTCTTTCTCATTCAAGAAACCCGTATCCCACTTGTTCTTGCACTCCTCTTTGCCCA
259 CAAGAATGGTTCTTTCTCATTCAAGAAACCCATATCCCACTCGTTCTTGCA-----C-TT-CCCA
* * *
26131960 CCTCTCTCCTCCCATGCTGTTTGGTTTACTTTTTCATTCTTTTAACAATAAATCTAAATTGTTTT
317 CCTCTCTCCTTCCATGCTGTTTGGTTTACTTTTTCATTCTTTT-ACGA-AAATCTAATTTGTTTT
*
26132025 ATTTTTTTTGTTTAGATCTCGATTCGACATCATCTTTTCATCCAAGAATGGTTCAAATCATCTTA
380 ATTTCTTTTGTTTAGATCTCGATTCGACATCATCTTTTCATCCAAGAATGGTTCAAATCATCTTA
* * * * ** * *
26132090 ATATAGTTGATTCTTCATGTTTTTTTATTGGTCGGGCATTCCTTTAATCTTTCTTGTGATTTCAT
445 ATATACTTGATTCTTCAAGTTTCTTTACTGGTCACGCATTCCTTTAATCTATCTTGTGATCTCAT
* * * ** *
26132155 TCGATTTTGCTTTTTATTCTTCAGGTCTGCCAACCATTTGTTTTCACTTAATTTGCAACTTTGAC
510 TCAATTTTGATCTTTATTCTTCAAATCTGCCAACCATTTGTTTTCACTTAATTTGCAACCTTGAC
* *
26132220 CCCTTTGGATTTCATACAGAATAGTGCTTCCCTAACCTACTTGGTGTCCTCCAAGAACCTTAATT
575 CCCTTTGGATTTCATACAGAATAGTGCTTCCCTAACCTACTTGGTCTCCTCCAAGAACCCTAATT
* *
26132285 TGGATTCAGTTTCCTTATTTTTTTTATGACTTGATTTGTGTTGTTACCCTTTTAATCCTAACATG
640 TCGATTCAGTTTCCTTATTTCTTTTATGACTTGATTTGTGTTGTTACCCTTTTAATCCTAACATG
* ** *
26132350 GATTTTTTGAGGTTTTGGTAGGTTCGAAATCCATGATTCCTTAATCTTGAGAATGCAATAATCTA
705 GATTGTTTGAGGTTTTGGTAGGGACGAAATCCATGATTCCTTAATCTTGAGAATGCAACAATCTA
* *
26132415 ATGCTCCTTAAGACATCTTCACCCGACTTTAGTCTTTTCCCTACTTTCTTCTCT
770 ATGCTCCTTAAGACATCTTCACCCGACTTTAGTCTTTTCCCAACTTCCTTCTCT
* * * *
26132469 TTTTCCTTTAATTTGTAGTTTGATTCTTTTTTGTTTGTTTCTAGTCTTTTATTTCTTTACTT-TC
1 CTTTCCTTTAATTTGTAG-TTGATTCTTGTCTGTTTGTTTCTAATCTTTTATTTCTTTACTTCT-
* *
26132533 ATATCAGGAATCAACAAGAAAAGATGTTCTCCCTCCTTAATACACCAAGAACCATTGAAAACAAG
64 ATATCAGGAATCAACAAGAAAAGACGTTCTCCCTTCTTAATACACCAAGAACCATTGAAAACAAG
* *
26132598 GAAGTCTCTTCTTTTCTTATTGTGTCGATTGCTTTTATCACAAAATAATTTTATTATGGCTTAAA
129 GAAGTCTCTTCTTTTCTTATTGTGCCGATTGCTTTTATCACAAAAAAATTTTATTATGGCTTAAA
*
26132663 AATCCATTCTGACAATCTGTTTTCTTCTTTCAATTCCAGATCTAGTTTGAAGCCTTCTTTTGGTT
194 AATCCATTCTGACAATCTGTTTTCTTCTTTCGATTCCAGATCTAGTTTGAAGCCTTCTTTTGGTT
*
26132728 CAAGAATGGTTCTTTCTCATTCAAGAAACCCATATCTCACTCGTTCTTGCAC-TCCCACCTCTCT
259 CAAGAATGGTTCTTTCTCATTCAAGAAACCCATATCCCACTCGTTCTTGCACTTCCCACCTCTCT
* * *
26132792 CCTTCCATGCTATTTGGTTTACTTTTTCATTCTTTTGACCGAACATCTAATTTCTTTTATTTCTT
324 CCTTCCATGCTGTTTGGTTTACTTTTTCATTCTTTT-A-CGAAAATCTAATTTGTTTTATTTCTT
* *
26132857 TTGTTTAGATCTAGATTCGACATAATCTTTTCATCCAAGAATGGTTCAAATCATCTTAATATACT
387 TTGTTTAGATCTCGATTCGACATCATCTTTTCATCCAAGAATGGTTCAAATCATCTTAATATACT
26132922 TGATTCTTCAAG-TTCTTTACTGGTCACGCATTCCTTTAATCTATCTTGTGATCTCATTCAATTT
452 TGATTCTTCAAGTTTCTTTACTGGTCACGCATTCCTTTAATCTATCTTGTGATCTCATTCAATTT
** * * *
26132986 TGATCTTTATTCTTCAAATCTGTCCAACTGTTTGTTTTCACTTAATTTGTAGCCTTG-CCCTTTT
517 TGATCTTTATTCTTCAAATCTG-CCAACCATTTGTTTTCACTTAATTTGCAACCTTGACCCCTTT
* * *
26133050 GGATTTCATACAGAATAGTGCTTCCTTAACCTACTTGGTCTCTTCTAAGAACCCTAATTTCGATT
581 GGATTTCATACAGAATAGTGCTTCCCTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTCGATT
* * * *
26133115 CAGTTTCCTTA-TTCTTTTATGACTTGATTTGTGTTGTTGCCTTTTTAATTCTAACTTGGATTGT
646 CAGTTTCCTTATTTCTTTTATGACTTGATTTGTGTTGTTACCCTTTTAATCCTAACATGGATTGT
* *
26133179 TTGA-GTTTTGGGTGGGGACGAACTCCATGATTCCTTAATCTTGAGAATGCAACAATCTAATGCT
711 TTGAGGTTTT-GGTAGGGACGAAATCCATGATTCCTTAATCTTGAGAATGCAACAATCTAATGCT
* *
26133243 GCTTAGGACATCTTCACGCC-ACTTTAGTCTTTTCCCAACTTCCTTCTCT
775 CCTTAAGACATCTTCAC-CCGACTTTAGTCTTTTCCCAACTTCCTTCTCT
* *
26133292 CTTTCCTTTAATTTGTAGTTCGATTCTTGTCTATTTATTTCTAATCTTTTATTTCTTTACTTCTA
1 CTTTCCTTTAATTTGTAGTT-GATTCTTGTCTGTTTGTTTCTAATCTTTTATTTCTTTACTTCTA
* *
26133357 TATGAGGAATCAACAAGAAAAGACGTTC-CCCATTCTTAATACACCAAGAACCATTGAAAACAAA
65 TATCAGGAATCAACAAGAAAAGACGTTCTCCC-TTCTTAATACACCAAGAACCATTGAAAACAAG
* *
26133421 TAAGTCTCTT-TCTTTCTTATTGTGCCGATTGCTTTTATCACAAAAAAATTTTGTTATGGCTTAA
129 GAAGTCTCTTCT-TTTCTTATTGTGCCGATTGCTTTTATCACAAAAAAATTTTATTATGGCTTAA
* * * * *
26133485 AAATCCATTAC-GATC-ATCTATTTTCTTCTTTCGATTTCAAAACTAG-TTGGAGTCCTTCTTTT
193 AAATCCATT-CTGA-CAATCTGTTTTCTTCTTTCGATTCCAGATCTAGTTTGAAG-CCTTCTTTT
* * * * * *
26133547 GGTTCAAGAGTGGTTCATTCTCATCCATGAAA-CCATATCCCACTCATTCTTAGGCTCCTCTTTT
255 GGTTCAAGAATGGTTCTTTCTCATTCAAGAAACCCATATCCCACTCGTTCTT--G---CAC--TT
* * * * *
26133611 CGCCATCTCTCTCTTTCCTTGCTGTTTGGTTTTCTTTTTCATTCTTTTA-GAAAAAT-TAATTGG
313 C-CCACCTCTCTCCTTCCATGCTGTTTGGTTTACTTTTTCATTCTTTTACG-AAAATCTAATTTG
*
26133674 TTTTA-TTCTTTTGTTTAGATCTCGACTCGACATCATCTTTTTCATCCAAGAATGGTTCAAATCA
376 TTTTATTTCTTTTGTTTAGATCTCGATTCGACATCATC-TTTTCATCCAAGAATGGTTCAAATCA
26133738 TCTTAATATACTTGATTCTTCA
440 TCTTAATATACTTGATTCTTCA
26133760 TCTAGAGCCC
Statistics
Matches: 1153, Mismatches: 113, Indels: 55
0.87 0.09 0.04
Matches are distributed among these distances:
822 33 0.03
823 384 0.33
824 145 0.13
825 167 0.14
826 3 0.00
827 31 0.03
828 60 0.05
829 4 0.00
830 3 0.00
831 41 0.04
832 1 0.00
833 280 0.24
834 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.44
Consensus pattern (823 bp):
CTTTCCTTTAATTTGTAGTTGATTCTTGTCTGTTTGTTTCTAATCTTTTATTTCTTTACTTCTAT
ATCAGGAATCAACAAGAAAAGACGTTCTCCCTTCTTAATACACCAAGAACCATTGAAAACAAGGA
AGTCTCTTCTTTTCTTATTGTGCCGATTGCTTTTATCACAAAAAAATTTTATTATGGCTTAAAAA
TCCATTCTGACAATCTGTTTTCTTCTTTCGATTCCAGATCTAGTTTGAAGCCTTCTTTTGGTTCA
AGAATGGTTCTTTCTCATTCAAGAAACCCATATCCCACTCGTTCTTGCACTTCCCACCTCTCTCC
TTCCATGCTGTTTGGTTTACTTTTTCATTCTTTTACGAAAATCTAATTTGTTTTATTTCTTTTGT
TTAGATCTCGATTCGACATCATCTTTTCATCCAAGAATGGTTCAAATCATCTTAATATACTTGAT
TCTTCAAGTTTCTTTACTGGTCACGCATTCCTTTAATCTATCTTGTGATCTCATTCAATTTTGAT
CTTTATTCTTCAAATCTGCCAACCATTTGTTTTCACTTAATTTGCAACCTTGACCCCTTTGGATT
TCATACAGAATAGTGCTTCCCTAACCTACTTGGTCTCCTCCAAGAACCCTAATTTCGATTCAGTT
TCCTTATTTCTTTTATGACTTGATTTGTGTTGTTACCCTTTTAATCCTAACATGGATTGTTTGAG
GTTTTGGTAGGGACGAAATCCATGATTCCTTAATCTTGAGAATGCAACAATCTAATGCTCCTTAA
GACATCTTCACCCGACTTTAGTCTTTTCCCAACTTCCTTCTCT
Found at i:26135115 original size:914 final size:905
Alignment explanation
Indices: 26133214--26135580 Score: 3152
Period size: 909 Copynumber: 2.6 Consensus size: 905
26133204 CATGATTCCT
* * * * * * *
26133214 TAATCTTGAGAATGCAACAATCTAATGCTGCTTAGGACATCTTCACGCCACTTTAGTCTTTTCCC
1 TAATCTTGAGAATCCAATAATCCAAGGCTCCTTAGGACATCTTCACGCCACTTTAGTGTTTT-CA
* *
26133279 AA-CTTCCTTCTCTCTTTCCTTTAATTTGTAGTTCGATTCTTGTCTATTTATTTCTAATCTTTTA
65 AAGCTTTCATCTCTCTTTCCTTTAATTTGTAGTTCGATTCTTGTCTATTTATTTCTAATCTTTTA
* * * *
26133343 TTTCTTTACTTCTATATGAGGAATCAACAAGAAAA-GACGTTCCCCATTCTTAATACACCAAGAA
130 TTTCTTTACTTCCATATCAGGAATCAACAAGAAAATG-TGTTCCCCCTTCTTAATACACCAAGAA
** *
26133407 CCATTGAAAACAAATAAGTCTCTTTCTTTCTTATTGTGCCGATTGCTTTTATCACAAAAAAATTT
194 CCATTGAAAACAAGGAAGTCTCTTT-TTTCTTATT-TGCTGATTGCTTTTATCAC-AAAAAATTT
* * * *
26133472 TGTTATGGCTTAAAAATCCATTAC-GATCATCTATTTTCTTCTTTCGATTTCAAAACTAGTTGGA
256 TGTTATGGCTTAAAAATCCATT-CTGATAATCTATTTTCTTCTTTCGATTTTAGAACTAGTTAGA
* * * *
26133536 GTCCTTCTTTTGGTTCAAGAGTGGTTCATTCTCATCCATGAAACCATATCCCACTCATTCTTAGG
320 GGCCTTCTTTTGGTTCAAGAATGGTTCATTCTCATCCATGAAACCGTATCCCACTCATTCTTAGA
* *
26133601 CTCCTCTTTTCGCCATCTCTCTCTTTCCTTGCTGTTTGGTTTTCTTTTTCATTCTTTT-AGAAAA
385 CTCTTC-TTT-GCCATCTCTCTCTTTCCTTGCTGTTTGGTTTTCTTTTTCATTCTTTTAACAAAA
* *
26133665 AT-TAATTGGTTTTA-TTCTTTTGTTTAGATCTCGACTCGACATCATCTTTTTCATCCAAGAATG
448 ATCTAATTGGTTTTATTTCTTTTGTTTAGATCTCGAATTGACATCATC-TTTTCATCCAAGAAT-
*
26133728 GTTCAAATCATCTTAATATACTTGATTCTTCATCTAGAGCCCAATGTAAAATCTGAAACTTAGAA
511 GTTCAAATCATCTTAATATACTTGATTCTTCATCTAGAGCCCAATATAAAATCTGAAACTTAGAA
* * * * ** *
26133793 AAAGTTTTGATCTTGTACTGCACATCACTTCATAAATTACTTATTCAAATTTAATAACTACAGAA
576 AAACTATTGATCCTGTACCGCACATCACTTCATAAACGACTGATTCAAATTTAATAACTACAGAA
* *
26133858 CATCAAATAAATTCAATTCATTGTGATAGAAAAAGAACAAGTAAACTAAGCAAGAACAAGGTTTT
641 CATCAAATAAATTCAATTCATTGTGATAGAAAAAGAACAAGTAAACCAAGCAAGAACAAGGTCTT
*
26133923 GAAAGAGATCAAGTCGGTTCACTGAGAGGACTTGTTCTTGATAAAATCCAATGGTATTAAGGCTG
706 GAAAGAGATCAAGTCGGTTCACTGAGAGGACTTGTTCTTGATAAAATCCAATGGAATTAAGGCTG
* *
26133988 CAAAGAAGGGATAACAATCGATTAAGAAAAGATTTGAATAATTGATAAGGATGCGTGAGAAATAG
771 CAAAGAAGGGAAAACAATCGATTAAGAAAAGATTTGAATAATTGATAAGGACGCGTGAGAAATAG
* *
26134053 GATCTCAAGTTTGTCCAAGTCGTGGATCTATAGTACAGCTCTAGACGAAAGATGAAATTTTGATT
836 GATCTCAAGTTTGTCCAAGTCGTGGATCTATACTACAGCTCTAGACGAAAGATGAAACTTTGATT
26134118 CTGAC
901 CTGAC
*
26134123 TAATCTTGAGAATCCAACT-ATCCAAGGCTCATTAGGACATCTTCACGCCACTTTAGTGTTTTCA
1 TAATCTTGAGAATCCAA-TAATCCAAGGCTCCTTAGGACATCTTCACGCCACTTTAGTGTTTTCA
* * * * * *
26134187 AAGCTTTGATCTCTCTTTTCTTTAATTTGTAGTTCAATTCTGGTCTGTTTTTTTCTAATCTTTTA
65 AAGCTTTCATCTCTCTTTCCTTTAATTTGTAGTTCGATTCTTGTCTATTTATTTCTAATCTTTTA
* * *
26134252 GTTCTTTACTTCCATATCAGGAATCAATAAGAAAATGTGTTCCCCCTTCTTAATACACGAAGAAC
130 TTTCTTTACTTCCATATCAGGAATCAACAAGAAAATGTGTTCCCCCTTCTTAATACACCAAGAAC
* *
26134317 CTTTGAAAACAAGGAAGTCTCTTCTTTTCTTATTATGCTGATTTCTTTTATCACAAAAGAATTTT
195 CATTGAAAACAAGGAAGTCTCTT-TTTTCTTATT-TGCTGATTGCTTTTATCACAAAA-AATTTT
* * * * * *
26134382 ATTATGGCATAAAAATCCATTCTGGTAATATGTTTTCTTCTTTTGATTTTAGAACTAGTTAGAGG
257 GTTATGGCTTAAAAATCCATTCTGATAATCTATTTTCTTCTTTCGATTTTAGAACTAGTTAGAGG
* * * *
26134447 CCTTCTTTTGGTTCAAGAATGGTTCCTTCTCATCCATGAAACCGCATCCCACACTTTCTTAGACT
322 CCTTCTTTTGGTTCAAGAATGGTTCATTCTCATCCATGAAACCGTATCCCACTCATTCTTAGACT
* *
26134512 CTTCTTTGGCTATCTCTCTCTTTCTTTGCTGTTTGGTTTTCTTTTTCATTCTTTTAACCAAAAAT
387 CTTCTTT-GCCATCTCTCTCTTTCCTTGCTGTTTGGTTTTCTTTTTCATTCTTTTAA-CAAAAAT
26134577 CTAATTGGTTTTATTTCTTTTGTTTAGATCTCGAATTGACATCATCTTTTCATCCAAGAATGCTT
450 CTAATTGGTTTTATTTCTTTTGTTTAGATCTCGAATTGACATCATCTTTTCATCCAAGAATG-TT
* *
26134642 CAAATCATCTTAATATACTTGATTCTTCATCTAGAGCCCAATATAAAATCTTAAACTTGGAAAAA
514 CAAATCATCTTAATATACTTGATTCTTCATCTAGAGCCCAATATAAAATCTGAAACTTAGAAAAA
* *
26134707 CTATTGATCCTGTACCGCATGTATCACTTCATAAACGACTGATTCAAATTTAATAATTGA-AGAA
579 CTATTGATCCTGTACCGCA--CATCACTTCATAAACGACTGATTCAAATTTAATAACT-ACAGAA
** * * * *
26134771 CATTGAATAAATTTATTTCATTGTGATAGAAATAGAACAAGTAAACCGAGCAAGAACAAGGATCT
641 CATCAAATAAATTCAATTCATTGTGATAGAAAAAGAACAAGTAAACCAAGCAAGAACAAGG-TCT
* * *
26134836 TGAAAGAGATCAATTCGGTTCACTGAGAGGACTTGTTCTTGATAAATTCTAATGGAATTAAGGCT
705 TGAAAGAGATCAAGTCGGTTCACTGAGAGGACTTGTTCTTGATAAAATCCAATGGAATTAAGGCT
* * *
26134901 TCCAAGATGGGAAAACAATCGATTAAGAAAAGATTTGAATAATTGATAAGGACGCGTGCAG-AAT
770 GCAAAGAAGGGAAAACAATCGATTAAGAAAAGATTTGAATAATTGATAAGGACGCGTG-AGAAAT
* * * *
26134965 AGGATCTCAAGTTTTTCCCAA-TCGTGGATCTATTCTACGGCTCTAGGCGAAAGATGAAACTTTG
834 AGGATCTCAAGTTTGT-CCAAGTCGTGGATCTATACTACAGCTCTAGACGAAAGATGAAACTTTG
26135029 ATTCTGAC
898 ATTCTGAC
* * *
26135037 TAATCTTGAAAATCCAATAATCCAAGGCTCCTTAGGACATCTTCATGCCACTGTAGTGTTTTCAA
1 TAATCTTGAGAATCCAATAATCCAAGGCTCCTTAGGACATCTTCACGCCACTTTAGTGTTTTCAA
** * * *
26135102 AGCTTTCATCTCTCTTTCCACTAATTTGTATTTCGATTCTTGTCTATTTCTTTCTAATATTTTAT
66 AGCTTTCATCTCTCTTTCCTTTAATTTGTAGTTCGATTCTTGTCTATTTATTTCTAATCTTTTAT
* * * * * * * ** *
26135167 TTCTTTTCTAT-CAGATCAAGAATCAACAAGAAAATATATTTCCCCTTCATAATATGCTAAGAAC
131 TTCTTTACT-TCCATATCAGGAATCAACAAGAAAATGTGTTCCCCCTTCTTAATACACCAAGAAC
* * * ***
26135231 CATTGAAAACAGGGAAG--TCTTTTTT-TTATTTGGTGTCAATTGCTTTTATGACAAAAAAAACT
195 CATTGAAAACAAGGAAGTCTCTTTTTTCTTATTTGCTG---ATTGCTTTTATCACAAAAAATTTT
* * * * *
26135293 GTTATAGCTTAAAAATCCATTCTGACAATCTATTTTCTTCTTTCGATTCTAGATA-TATTTTGAG
257 GTTATGGCTTAAAAATCCATTCTGATAATCTATTTTCTTCTTTCGATTTTAGA-ACTAGTTAGAG
* * ** *
26135357 GCCTTCTTTTGGTTCAAGAATGGTTCTTTCTCATCCAAGAAACCGTATCCCACTCGGTCGT-GCA
321 GCCTTCTTTTGGTTCAAGAATGGTTCATTCTCATCCATGAAACCGTATCCCACTCATTCTTAG-A
* * * * *
26135421 CTCTACTTTGCCACCTCTCTCCTTCCATGCTGTTTGGTTTACTTTTTCATTCTTTTAACAAGAAA
385 CTCTTCTTTGCCATCTCTCTCTTTCCTTGCTGTTTGGTTTTCTTTTTCATTCTTTTAACAA-AAA
26135486 TCTAAATT-GTTTTATTT-TTTTGTTTAGATCTCG-ATTAGACATCATCTTTTCATCCAAGAATA
449 TCT-AATTGGTTTTATTTCTTTTGTTTAGATCTCGAATT-GACATCATCTTTTCATCCAAGAAT-
**
26135548 GTTCAAATCATCTTAATATGGTTGATTCTTCAT
511 GTTCAAATCATCTTAATATACTTGATTCTTCAT
26135581 GTTTTTTATT
Statistics
Matches: 1280, Mismatches: 150, Indels: 56
0.86 0.10 0.04
Matches are distributed among these distances:
908 59 0.05
909 407 0.32
910 74 0.06
911 231 0.18
912 51 0.04
913 91 0.07
914 360 0.28
915 7 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (905 bp):
TAATCTTGAGAATCCAATAATCCAAGGCTCCTTAGGACATCTTCACGCCACTTTAGTGTTTTCAA
AGCTTTCATCTCTCTTTCCTTTAATTTGTAGTTCGATTCTTGTCTATTTATTTCTAATCTTTTAT
TTCTTTACTTCCATATCAGGAATCAACAAGAAAATGTGTTCCCCCTTCTTAATACACCAAGAACC
ATTGAAAACAAGGAAGTCTCTTTTTTCTTATTTGCTGATTGCTTTTATCACAAAAAATTTTGTTA
TGGCTTAAAAATCCATTCTGATAATCTATTTTCTTCTTTCGATTTTAGAACTAGTTAGAGGCCTT
CTTTTGGTTCAAGAATGGTTCATTCTCATCCATGAAACCGTATCCCACTCATTCTTAGACTCTTC
TTTGCCATCTCTCTCTTTCCTTGCTGTTTGGTTTTCTTTTTCATTCTTTTAACAAAAATCTAATT
GGTTTTATTTCTTTTGTTTAGATCTCGAATTGACATCATCTTTTCATCCAAGAATGTTCAAATCA
TCTTAATATACTTGATTCTTCATCTAGAGCCCAATATAAAATCTGAAACTTAGAAAAACTATTGA
TCCTGTACCGCACATCACTTCATAAACGACTGATTCAAATTTAATAACTACAGAACATCAAATAA
ATTCAATTCATTGTGATAGAAAAAGAACAAGTAAACCAAGCAAGAACAAGGTCTTGAAAGAGATC
AAGTCGGTTCACTGAGAGGACTTGTTCTTGATAAAATCCAATGGAATTAAGGCTGCAAAGAAGGG
AAAACAATCGATTAAGAAAAGATTTGAATAATTGATAAGGACGCGTGAGAAATAGGATCTCAAGT
TTGTCCAAGTCGTGGATCTATACTACAGCTCTAGACGAAAGATGAAACTTTGATTCTGAC
Found at i:26140551 original size:27 final size:27
Alignment explanation
Indices: 26140517--26140694 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
26140507 TAAACTGTAC
26140517 AGCACTAAGTGTGCGATATGACTATGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * * *
26140544 TGCACTAAGTGTGCGAAATGAATACG-
1 AGCACTAAGTGTGCGATATGACTATGT
* *
26140570 ATGCACTAAGTGTGCGAAATGA-TCATGC
1 A-GCACTAAGTGTGCGATATGACT-ATGT
* *
26140598 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TATGACTATGT
* * *
26140626 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * *
26140653 GGCACTAAGTGTGCGAGT-TGATTATAT
1 AGCACTAAGTGTGCGA-TATGACTATGT
*
26140680 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26140695 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 103 0.81
28 22 0.17
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATATGACTATGT
Found at i:26140632 original size:82 final size:81
Alignment explanation
Indices: 26140518--26140668 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
26140508 AAACTGTACA
*
26140518 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
26140582 TGCGAAATGATCATGCG
65 TGCGAAATGATCATGCG
* ** *
26140599 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
26140664 TGCGA
65 TGCGA
26140669 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGATCATGCG
Found at i:26140685 original size:82 final size:81
Alignment explanation
Indices: 26140514--26140694 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26140504 GATTAAACTG
*
26140514 TACAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATACGATGCACTAA
1 TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26140579 GTGTGCGAAATGATCA
66 GTGTGCGAAATGATCA
* * * ** *
26140595 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
** *
26140659 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAAATGATCA
* *
26140677 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26140695 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAAATGATCA
Found at i:26148590 original size:27 final size:27
Alignment explanation
Indices: 26148556--26148733 Score: 164
Period size: 27 Copynumber: 6.6 Consensus size: 27
26148546 TAAACTGTAC
26148556 AGCACTAAGTGTGCGATATGACTATGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * * *
26148583 TGCACTAAGTGTGCGAAATGAATACG-
1 AGCACTAAGTGTGCGATATGACTATGT
* *
26148609 ATGCACTAAGTGTGCGAAATGA-TCATGC
1 A-GCACTAAGTGTGCGATATGACT-ATGT
* *
26148637 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TATGACTATGT
* * *
26148665 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * *
26148692 GGCACTAAGTGTGCGAGT-TGATTATAT
1 AGCACTAAGTGTGCGA-TATGACTATGT
*
26148719 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26148734 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 103 0.81
28 22 0.17
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATATGACTATGT
Found at i:26148671 original size:82 final size:81
Alignment explanation
Indices: 26148557--26148707 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
26148547 AAACTGTACA
*
26148557 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
26148621 TGCGAAATGATCATGCG
65 TGCGAAATGATCATGCG
* ** *
26148638 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
26148703 TGCGA
65 TGCGA
26148708 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGATCATGCG
Found at i:26148724 original size:82 final size:81
Alignment explanation
Indices: 26148553--26148733 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26148543 GATTAAACTG
*
26148553 TACAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATACGATGCACTAA
1 TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26148618 GTGTGCGAAATGATCA
66 GTGTGCGAAATGATCA
* * * ** *
26148634 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
** *
26148698 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAAATGATCA
* *
26148716 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26148734 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAAATGATCA
Found at i:26150930 original size:39 final size:40
Alignment explanation
Indices: 26150898--26151014 Score: 150
Period size: 39 Copynumber: 3.0 Consensus size: 40
26150888 TAAAAAAATG
* * * *
26150898 TATTAAAGATGTCCAAACTATGACATAATT-AAAAACTCT
1 TATTAATGATGTTCAAATTATGACATAATTAAAAAACTCA
* *
26150937 TATTAATGATGTTCAGATTATGACAT-ATTTAAAAACTCA
1 TATTAATGATGTTCAAATTATGACATAATTAAAAAACTCA
*
26150976 TATTAATGATGTTTAAATTATGACATAATT-AAAAACTCA
1 TATTAATGATGTTCAAATTATGACATAATTAAAAAACTCA
26151015 AACAAAATGA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
38 3 0.04
39 63 0.91
40 3 0.04
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.36
Consensus pattern (40 bp):
TATTAATGATGTTCAAATTATGACATAATTAAAAAACTCA
Found at i:26157724 original size:78 final size:78
Alignment explanation
Indices: 26157608--26157793 Score: 241
Period size: 77 Copynumber: 2.4 Consensus size: 78
26157598 GCTACTCGTT
*
26157608 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTC-GGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCAG
*
26157673 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * * *
26157688 CAAATGCCTTCGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCAGA
*
26157751 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* *
26157765 CAAATGCCTTCGGATCTTAGTCCGGATAT
1 CAAATGCCTTCGGA-CATAGCCCGGATAT
26157794 GGTCACTTAG
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
77 35 0.37
78 34 0.36
79 13 0.14
80 12 0.13
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCAGAA
TTAGTAACTCGCA
Found at i:26157753 original size:39 final size:40
Alignment explanation
Indices: 26157608--26157830 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
26157598 GCTACTCGTT
* *
26157608 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
26157648 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
26157688 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
26157726 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
26157765 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
*
26157806 GAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26157831 CATCATTCAA
Statistics
Matches: 161, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
38 34 0.21
39 42 0.26
40 73 0.45
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:26157814 original size:117 final size:120
Alignment explanation
Indices: 26157608--26157830 Score: 278
Period size: 117 Copynumber: 1.9 Consensus size: 120
26157598 GCTACTCGTT
*
26157608 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
26157673 ATTTAGTAACTCGCACAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
26157726 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * * *
26157788 GGATATGGTCACTTAGCAGAAA-GCCTTCGGGACTTAGCCCGGA
64 AGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
26157831 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
116 4 0.04
117 51 0.57
118 23 0.26
119 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:26165704 original size:79 final size:79
Alignment explanation
Indices: 26165593--26165816 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 79
26165583 GCTACTCGTT
* *
26165593 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACTCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGG
*
26165658 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
26165673 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGG
*
26165736 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* ** * * * *
26165751 CAAATGCCTTC-GGATCTTATTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGG-CTTAACCC
26165814 GGA
63 GGA
26165817 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.02
78 33 0.26
79 56 0.45
80 34 0.27
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGA
ATTAGTAACTCGCA
Found at i:26165714 original size:39 final size:40
Alignment explanation
Indices: 26165593--26165816 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
26165583 GCTACTCGTT
* *
26165593 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
26165633 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
26165673 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
26165712 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
** * * *
26165751 CAAATGCCTTC-GGATCTTATTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
26165792 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26165817 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 73 0.45
40 74 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:26169008 original size:45 final size:45
Alignment explanation
Indices: 26168927--26169084 Score: 126
Period size: 45 Copynumber: 3.6 Consensus size: 45
26168917 AACCGTTACA
* * * *
26168927 CGGTGG-ATCAACACATAAC-ACCACCCTTATAATCAATTACATT-
1 CGGTGGAATCAGCACATAGCAACCACCATTATAATCAATGA-ATTC
** *
26168970 CGGTGGAATCAGCACATAGCAACCACCATTATTTTCAATGATTTC
1 CGGTGGAATCAGCACATAGCAACCACCATTATAATCAATGAATTC
* ** * * *
26169015 CGGTGGAGTTGGCACATAGCAACCACCTTTATAATCAAT-AGTACC
1 CGGTGGAATCAGCACATAGCAACCACCATTATAATCAATGAAT-TC
* **
26169060 CGGTGGAGTTGGCACATAGCAACCA
1 CGGTGGAATCAGCACATAGCAACCA
26169085 TGATAAAGGG
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
43 6 0.06
44 15 0.16
45 75 0.78
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCATTATAATCAATGAATTC
Found at i:26175688 original size:40 final size:40
Alignment explanation
Indices: 26175604--26175789 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
26175594 TTGAATGATG
* * * * *
26175604 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
26175644 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26175684 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26175724 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
26175765 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26175790 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 114 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26175807 original size:80 final size:79
Alignment explanation
Indices: 26175605--26175822 Score: 192
Period size: 80 Copynumber: 2.7 Consensus size: 79
26175595 TGAATGATGT
** * * * * * *
26175605 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTAAATCCGG-TTAA-ATCCCGAAGGCAAT
*
26175668 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* *** *
26175685 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAAATCCCGAAGGCAATTG
*
26175750 TGCGAGTTACT-ATAA
65 TGCGAGATACTAAT-A
* * *
26175765 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTTAAATCCCGAAGG
26175823 TACGTGATTT
Statistics
Matches: 114, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
79 19 0.17
80 87 0.76
81 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:26183639 original size:40 final size:40
Alignment explanation
Indices: 26183555--26183740 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
26183545 TTGAATGATG
* * * * *
26183555 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
26183595 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26183635 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26183675 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
26183716 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26183741 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 114 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26183758 original size:80 final size:79
Alignment explanation
Indices: 26183556--26183773 Score: 192
Period size: 80 Copynumber: 2.7 Consensus size: 79
26183546 TGAATGATGT
** * * * * * *
26183556 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTTACTAAATCCGG-TTAA-ATCCCGAAGGCAAT
*
26183619 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* *** *
26183636 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAAATCCCGAAGGCAATTG
*
26183701 TGCGAGTTACT-ATAA
65 TGCGAGATACTAAT-A
* * *
26183716 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTTAAATCCCGAAGG
26183774 TACGTGATTT
Statistics
Matches: 114, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
79 19 0.17
80 87 0.76
81 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:26199557 original size:24 final size:25
Alignment explanation
Indices: 26199505--26199557 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
26199495 CTGTAAATTG
* *
26199505 GTAAGCTCATATGAGCTGAGAATCG
1 GTAAGCTCATATGAGCTGACAATCA
26199530 GTAAGCTC-TCATGAGCT-ACAATCA
1 GTAAGCTCAT-ATGAGCTGACAATCA
26199554 GTAA
1 GTAA
26199558 TCCCTAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (25 bp):
GTAAGCTCATATGAGCTGACAATCA
Found at i:26204796 original size:10 final size:10
Alignment explanation
Indices: 26204774--26204821 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
26204764 AGCTAATAAC
26204774 GAGCTGAATT
1 GAGCTGAATT
26204784 GAGCTCGAA-T
1 GAGCT-GAATT
*
26204794 GAGCTGACTT
1 GAGCTGAATT
* *
26204804 GAGCTCAAGT
1 GAGCTGAATT
26204814 GAGCTGAA
1 GAGCTGAA
26204822 CCACATCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
9 2 0.06
10 26 0.84
11 3 0.10
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (10 bp):
GAGCTGAATT
Found at i:26204799 original size:20 final size:20
Alignment explanation
Indices: 26204774--26204821 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
26204764 AGCTAATAAC
26204774 GAGCTGAATTGAGCTCGAA-T
1 GAGCTGAATTGAGCTC-AAGT
*
26204794 GAGCTGACTTGAGCTCAAGT
1 GAGCTGAATTGAGCTCAAGT
26204814 GAGCTGAA
1 GAGCTGAA
26204822 CCACATCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (20 bp):
GAGCTGAATTGAGCTCAAGT
Found at i:26206208 original size:20 final size:20
Alignment explanation
Indices: 26206185--26206222 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26206175 TCAGTTCATT
26206185 CGAGCTCAAGTCAGCTCACA
1 CGAGCTCAAGTCAGCTCACA
* *
26206205 CGAGCTTAATTCAGCTCA
1 CGAGCTCAAGTCAGCTCA
26206223 TTGAGCTCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (20 bp):
CGAGCTCAAGTCAGCTCACA
Found at i:26208579 original size:24 final size:26
Alignment explanation
Indices: 26208528--26208592 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 26
26208518 AAAAAGGGCT
* *
26208528 GAAATTGGCTAAGTGAAATGATGCTG
1 GAAATTGGCTAAGTGAAATGAGGATG
*
26208554 GAAA-TGGCTAGGTG-AATGAGGATG
1 GAAATTGGCTAAGTGAAATGAGGATG
*
26208578 GAGATTCGGCTAAGT
1 GAAATT-GGCTAAGT
26208593 TTTTGAAGCA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
24 11 0.34
25 10 0.31
26 11 0.34
ACGTcount: A:0.32, C:0.08, G:0.35, T:0.25
Consensus pattern (26 bp):
GAAATTGGCTAAGTGAAATGAGGATG
Found at i:26209765 original size:28 final size:26
Alignment explanation
Indices: 26209734--26209794 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
26209724 AAAAAAACAC
26209734 ATTAAAATGATGTAATATACTAAGACAA
1 ATTAAAAT-ATGTAATA-ACTAAGACAA
* * *
26209762 ATTAATGATATGTACTAACTAAGACAT
1 ATTAA-AATATGTAATAACTAAGACAA
26209789 ATTAAA
1 ATTAAA
26209795 TGCATGGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
27 14 0.50
28 12 0.43
29 2 0.07
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (26 bp):
ATTAAAATATGTAATAACTAAGACAA
Found at i:26211923 original size:19 final size:20
Alignment explanation
Indices: 26211901--26211942 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
26211891 TCCAAGTTAG
26211901 ATAAAAAAAATTAAAATA-A
1 ATAAAAAAAATTAAAATAGA
* *
26211920 AT-AAGACAATTAAAATAGA
1 ATAAAAAAAATTAAAATAGA
26211939 ATAA
1 ATAA
26211943 TAAATCTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
18 13 0.68
19 5 0.26
20 1 0.05
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (20 bp):
ATAAAAAAAATTAAAATAGA
Found at i:26216234 original size:19 final size:19
Alignment explanation
Indices: 26216210--26216247 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26216200 TGGCTTAGAA
26216210 AATGACTCTTGAGTTGTCC
1 AATGACTCTTGAGTTGTCC
26216229 AATGACTCTTGAGTTGTCC
1 AATGACTCTTGAGTTGTCC
26216248 TTGGCTAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (19 bp):
AATGACTCTTGAGTTGTCC
Found at i:26218109 original size:39 final size:40
Alignment explanation
Indices: 26218064--26218288 Score: 197
Period size: 40 Copynumber: 5.7 Consensus size: 40
26218054 GCTCCTCGTT
* * *
26218064 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
26218104 C-AATGCCTTCGGGACATAACCCGGATTTAATAATTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
26218143 CGAATGCCTTCGGGACTTAACTCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
26218183 CAAAGGCCTTCGGGGCTTAACCTGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
* ** * * *
26218223 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
26218264 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
26218289 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 39 0.25
40 100 0.65
41 15 0.10
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:26226051 original size:16 final size:16
Alignment explanation
Indices: 26226030--26226060 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26226020 AATTATGACC
26226030 TAATTAAGTACTTAAT
1 TAATTAAGTACTTAAT
*
26226046 TAATTAAGTGCTTAA
1 TAATTAAGTACTTAA
26226061 ATTATGTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (16 bp):
TAATTAAGTACTTAAT
Found at i:26227553 original size:10 final size:12
Alignment explanation
Indices: 26227538--26227589 Score: 74
Period size: 12 Copynumber: 4.6 Consensus size: 12
26227528 ACGGTATTGT
*
26227538 AAAAAAA-TAAA
1 AAAAAAATTCAA
26227549 AAAAAAATTC--
1 AAAAAAATTCAA
26227559 AAAAAAATTCAA
1 AAAAAAATTCAA
26227571 AAAAAAATTCAA
1 AAAAAAATTCAA
26227583 AAAAAAA
1 AAAAAAA
26227590 AGTTTGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
10 10 0.27
11 7 0.19
12 20 0.54
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:26227562 original size:9 final size:10
Alignment explanation
Indices: 26227549--26227587 Score: 60
Period size: 10 Copynumber: 3.7 Consensus size: 10
26227539 AAAAAATAAA
26227549 AAAAAAATTC
1 AAAAAAATTC
26227559 AAAAAAATTC
1 AAAAAAATTC
26227569 AAAAAAAAATTC
1 --AAAAAAATTC
26227581 AAAAAAA
1 AAAAAAA
26227588 AAAGTTTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 17 0.63
12 10 0.37
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:26227572 original size:22 final size:21
Alignment explanation
Indices: 26227538--26227587 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
26227528 ACGGTATTGT
26227538 AAAAAAATAAAAAAAAAATTC
1 AAAAAAATAAAAAAAAAATTC
*
26227559 AAAAAAATTCAAAAAAAAATTC
1 AAAAAAA-TAAAAAAAAAATTC
26227581 AAAAAAA
1 AAAAAAA
26227588 AAAGTTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 7 0.26
22 20 0.74
ACGTcount: A:0.80, C:0.06, G:0.00, T:0.14
Consensus pattern (21 bp):
AAAAAAATAAAAAAAAAATTC
Found at i:26237452 original size:12 final size:12
Alignment explanation
Indices: 26237435--26237461 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26237425 GACGTCAAGC
26237435 CAAGGTGAGTAT
1 CAAGGTGAGTAT
26237447 CAAGGTGAGTAT
1 CAAGGTGAGTAT
26237459 CAA
1 CAA
26237462 ATTGAAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (12 bp):
CAAGGTGAGTAT
Found at i:26260969 original size:42 final size:43
Alignment explanation
Indices: 26260830--26261068 Score: 237
Period size: 42 Copynumber: 5.7 Consensus size: 43
26260820 ATCCGTTACT
* *
26260830 CGGTGGATTCAGCACTTAGCAACCACC-TTA-AATTCAGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAA-TCAATGATA
* *
26260872 CGG-GGAATCAAG-ACATAGCAACC-CCTTTCACAATCAAAGATA
1 CGGTGGAATC-AGCACTTAGCAACCACCTTT-ACAATCAATGATA
* * *
26260914 CGGTGGAATCAGCACTTAACAACCACCTTTATATTCAATGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
* *
26260957 CTG-GGAATCAGCACATAGCAACC-CCTTTCACAATCAAAT-ATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTT-ACAATC-AATGATA
* * *
26260999 CGGTGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
* *
26261042 C-GTGGAATCAACACTTGGCAACC-CCTT
1 CGGTGGAATCAGCACTTAGCAACCACCTT
26261069 GGGGAATCTG
Statistics
Matches: 165, Mismatches: 20, Indels: 25
0.79 0.10 0.12
Matches are distributed among these distances:
40 2 0.01
41 26 0.16
42 68 0.41
43 59 0.36
44 10 0.06
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
Found at i:26260976 original size:85 final size:85
Alignment explanation
Indices: 26260830--26261068 Score: 331
Period size: 85 Copynumber: 2.8 Consensus size: 85
26260820 ATCCGTTACT
* *
26260830 CGGTGGATTCAGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAAGACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAATCAAGACATAGCAAC
26260894 CCCTTTCACAATCAAAGATA
66 CCCTTTCACAATCAAAGATA
* * *
26260914 CGGTGGAATCAGCACTTAACAACCACCTTTATATTCAATGATACTGGGAATC-AGCACATAGCAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAATCAAG-ACATAGCAA
*
26260978 CCCCTTTCACAATCAAATATA
65 CCCCTTTCACAATCAAAGATA
* * * * * *
26260999 CGGTGGAATCAGCACTTAGCAACCACCTTTAGAA-TCAATAATTCGTGGAATCAACACTTGGCAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTA-AATTCAATGATACGGGGAATCAAGACATAGCAA
26261063 CCCCTT
65 CCCCTT
26261069 GGGGAATCTG
Statistics
Matches: 136, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
84 27 0.20
85 107 0.79
86 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAATCAAGACATAGCAAC
CCCTTTCACAATCAAAGATA
Found at i:26261082 original size:26 final size:26
Alignment explanation
Indices: 26261053--26261120 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
26261043 GTGGAATCAA
26261053 CACTTGGCAACCCCTTGGGGAATCTG
1 CACTTGGCAACCCCTTGGGGAATCTG
*
26261079 CACTTGGCAACCCCTCGGGGAATCTG
1 CACTTGGCAACCCCTTGGGGAATCTG
* *
26261105 CACTTAGCGACCCCTT
1 CACTTGGCAACCCCTT
26261121 TTTATCTAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.19, C:0.35, G:0.24, T:0.22
Consensus pattern (26 bp):
CACTTGGCAACCCCTTGGGGAATCTG
Found at i:26261491 original size:30 final size:30
Alignment explanation
Indices: 26261456--26261520 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
26261446 ATCCTTAACT
26261456 CAAACTTTGGCAAAATTACAATTTTACCCC
1 CAAACTTTGGCAAAATTACAATTTTACCCC
* * * * * *
26261486 TAAACTTTTGCATATTTACACTTTTTCCCC
1 CAAACTTTGGCAAAATTACAATTTTACCCC
26261516 CAAAC
1 CAAAC
26261521 CTCAGAAATT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (30 bp):
CAAACTTTGGCAAAATTACAATTTTACCCC
Found at i:26266803 original size:27 final size:26
Alignment explanation
Indices: 26266773--26266949 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 26
26266763 AAATTGTGCG
*
26266773 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTA
* *
26266800 GCACTAAGTGTGCGAAATGAATATG-A
1 GCACTAAGTGTGCG-ATTGACTATGTA
* **
26266826 TGCACTAAGTGTGCGAATTGACCATGCG
1 -GCACTAAGTGTGCG-ATTGACTATGTA
26266854 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTA
* * *
26266882 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTA
* *
26266909 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTA
*
26266936 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26266950 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTA
Found at i:26266892 original size:82 final size:81
Alignment explanation
Indices: 26266769--26266928 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 81
26266759 GATTAAATTG
* * *
26266769 TGCGGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTA
1 TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTA
26266833 AGTGTGCGAATTGACCA
65 AGTGTGCGAATTGACCA
** *
26266850 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTA
1 TGCGGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTA
*
26266915 AGTGTGCGAGTTGA
65 AGTGTGCGAATTGA
26266929 TTATATAGCA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
81 22 0.31
82 48 0.69
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAA
GTGTGCGAATTGACCA
Found at i:26266940 original size:82 final size:81
Alignment explanation
Indices: 26266773--26266949 Score: 212
Period size: 82 Copynumber: 2.2 Consensus size: 81
26266763 AAATTGTGCG
* * *
26266773 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
26266838 GCGAATTGACCATGCG
66 GCGAATTGACCATACA
** *
26266854 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** *
26266918 GTGCGAGTTGATTATATA
64 GTGCGAATTGACCATACA
*
26266936 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26266950 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACA
Found at i:26284856 original size:25 final size:24
Alignment explanation
Indices: 26284780--26284856 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
26284770 CAGCTTGTAT
* *
26284780 GAGCTTACTAATTTTAGCTCATGA
1 GAGCTTACCAATTTTAGCTCGTGA
*
26284804 GAGCTTACCAAATTTAGCTCGT-A
1 GAGCTTACCAATTTTAGCTCGTGA
*
26284827 TGAGCTTACCGATTTATAGCTCGTGA
1 -GAGCTTACCAATTT-TAGCTCGTGA
26284853 GAGC
1 GAGC
26284857 ATATCGATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
23 1 0.02
24 31 0.69
25 12 0.27
26 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (24 bp):
GAGCTTACCAATTTTAGCTCGTGA
Found at i:26284864 original size:25 final size:24
Alignment explanation
Indices: 26284818--26284885 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 24
26284808 TTACCAAATT
* *
26284818 TAGCTCGTATGAGCTTACCGATTTA
1 TAGCTCGTA-GAGCATACCGATTCA
*
26284843 TAGCTCGTGAGAGCATATCGATTCA
1 TAGCTCGT-AGAGCATACCGATTCA
*
26284868 TAGCTTGTAAGAGCATAC
1 TAGCTCGT-AGAGCATAC
26284886 ATGTACAGGA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (24 bp):
TAGCTCGTAGAGCATACCGATTCA
Found at i:26293907 original size:8 final size:8
Alignment explanation
Indices: 26293896--26293920 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26293886 TATAACATTA
26293896 TATTATAT
1 TATTATAT
26293904 TATTATAT
1 TATTATAT
26293912 TATTATAT
1 TATTATAT
26293920 T
1 T
26293921 TTAACTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATTATAT
Found at i:26301003 original size:43 final size:43
Alignment explanation
Indices: 26300935--26301049 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
26300925 AGCTCGTACA
* * * * *
26300935 ATGCCAACGTCCCAGACGTGATCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAAACACAAATCG
*
26300978 ATGCC-ACTGTCCCAAACAG-GGTCTTACACGTAAACACAAATTG
1 ATGCCAAC-GTCCCAAAC-GTGGTCTTACACGTAAACACAAATCG
*
26301021 ATGCCAACGTCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAAACGTGGTCTTACAC
26301050 AAAAAACACA
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
42 3 0.05
43 55 0.90
44 3 0.05
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGTAAACACAAATCG
Found at i:26303889 original size:24 final size:25
Alignment explanation
Indices: 26303860--26303921 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
26303850 TAACTCACAT
*
26303860 GAGCTTACCAATTT-CAGCTCGTGA
1 GAGCTTACCAATTTACAGCTCATGA
* *
26303884 GAGCTTACCGATTTACAGCTTATGA
1 GAGCTTACCAATTTACAGCTCATGA
*
26303909 GAGCATACCAATT
1 GAGCTTACCAATT
26303922 CATAGCTCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 13 0.41
25 19 0.59
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GAGCTTACCAATTTACAGCTCATGA
Found at i:26303928 original size:25 final size:25
Alignment explanation
Indices: 26303881--26303928 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
26303871 TTTCAGCTCG
* * *
26303881 TGAGAGCTTACCGATTTACAGCTTA
1 TGAGAGCATACCAATTCACAGCTTA
*
26303906 TGAGAGCATACCAATTCATAGCT
1 TGAGAGCATACCAATTCACAGCT
26303929 CGTATGAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
TGAGAGCATACCAATTCACAGCTTA
Found at i:26305130 original size:12 final size:12
Alignment explanation
Indices: 26305113--26305142 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26305103 TCAGGCTACT
26305113 ACACGGCCTAGC
1 ACACGGCCTAGC
*
26305125 ACACGGCTTAGC
1 ACACGGCCTAGC
26305137 ACACGG
1 ACACGG
26305143 GCGTGTGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.37, G:0.27, T:0.10
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:26310070 original size:51 final size:51
Alignment explanation
Indices: 26309991--26310126 Score: 186
Period size: 51 Copynumber: 2.7 Consensus size: 51
26309981 GATACCTGTT
* *
26309991 CACATAGTAGTCTGCACATAGTACTACACATGTGA-CCATCAG-TATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGATCCA--AGCTATCCGATA
* * *
26310042 CACGTAGTAGCCTGTACATAGTACTACACACGTGATCGAAGCTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGATCCAAGCTATCCGATA
*
26310093 CGCATAGTAGCCTGCACATAGTACTACACACGTG
1 CACATAGTAGCCTGCACATAGTACTACACACGTG
26310127 GCCGTCACTT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
50 2 0.03
51 71 0.95
52 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGATCCAAGCTATCCGATA
Found at i:26317807 original size:15 final size:15
Alignment explanation
Indices: 26317787--26317838 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
26317777 ACTACAAAAA
26317787 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
26317802 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
26317821 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
26317836 ATT
1 ATT
26317839 AATATTCAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:26322273 original size:91 final size:91
Alignment explanation
Indices: 26322114--26322292 Score: 225
Period size: 91 Copynumber: 2.0 Consensus size: 91
26322104 GTCAGGGATT
* **
26322114 TCTTTATCAATGGATGAGATCTAACATGTGTTGCGAATTCTCGACAACTTGAGTGAGCAAAATCG
1 TCTTTATCAATGGATGAGATCCAACACATGTTGCGAATTCTCGACAACTTGAGTGAGCAAAATCG
*
26322179 AATAAAGTTTGCAAAAGTAAACCCGA
66 AATAAAGCTTGCAAAAGTAAACCCGA
* * * * ** *
26322205 TCTTTATCGATGGCTGAGATCCAACACATGTTGCTAATTCTCGA-AAGCTTGAGTGAGTAGCATT
1 TCTTTATCAATGGATGAGATCCAACACATGTTGCGAATTCTCGACAA-CTTGAGTGAGCAAAATC
* *
26322269 GAATAAAGCTTGTATAAGTAAACC
65 GAATAAAGCTTGCAAAAGTAAACC
26322293 AACTATACAA
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 2 0.03
91 72 0.97
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (91 bp):
TCTTTATCAATGGATGAGATCCAACACATGTTGCGAATTCTCGACAACTTGAGTGAGCAAAATCG
AATAAAGCTTGCAAAAGTAAACCCGA
Found at i:26342406 original size:19 final size:21
Alignment explanation
Indices: 26342372--26342415 Score: 65
Period size: 19 Copynumber: 2.1 Consensus size: 21
26342362 AAGTTGCTTG
26342372 AATTAATTACTCATCTTAG-TT
1 AATTAATTA-TCATCTTAGATT
26342393 AATTAATT-TCATCTTAGATT
1 AATTAATTATCATCTTAGATT
26342413 AAT
1 AAT
26342416 AAATGAGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.41
20 5 0.23
21 8 0.36
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.48
Consensus pattern (21 bp):
AATTAATTATCATCTTAGATT
Found at i:26344119 original size:28 final size:27
Alignment explanation
Indices: 26344062--26344213 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
26344052 TAAATTGTGC
*
26344062 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26344089 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
26344117 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
26344144 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCG-AGTTGACTATGT
* *
26344172 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26344199 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26344214 GACTTAATAT
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.56
28 52 0.44
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:26344125 original size:55 final size:55
Alignment explanation
Indices: 26344062--26344213 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
26344052 TAAATTGTGC
* *
26344062 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAATTTGACTATGT
*
26344117 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAATTTGACTATGT
* * *
26344172 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
26344214 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAATTTGACTATGT
Found at i:26363091 original size:65 final size:65
Alignment explanation
Indices: 26362987--26363117 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
26362977 AACCTTTATT
* *
26362987 TAGCCTCGATTACATTTATGAATTTTTATGTATTATGTTTAAGGTAAGATGGACAAGCAAGCCTA
1 TAGCCTCGATTACATTTATGAAATTTTATGTATTATGTTTAAGGTAAGATGGACAAGCAACCCTA
*
26363052 TAGCCTCGATTATATTTATGAAATTTTATGTATTATGTTTAAGGTAAGATGGACAAGCAACCCTA
1 TAGCCTCGATTACATTTATGAAATTTTATGTATTATGTTTAAGGTAAGATGGACAAGCAACCCTA
26363117 T
1 T
26363118 GGTGGTTAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (65 bp):
TAGCCTCGATTACATTTATGAAATTTTATGTATTATGTTTAAGGTAAGATGGACAAGCAACCCTA
Found at i:26372270 original size:45 final size:45
Alignment explanation
Indices: 26372201--26372286 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
26372191 AGAGACTTGG
* * *
26372201 TGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCGA
1 TGGAATCAGCACATAGCAAACACCTTACTAATCAATGATGTCCGA
26372246 TGGAATCAGCACATAGCAAACACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGCAAACACCTTACTAATCAATGATGT
26372287 TCAGTTCACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAAACACCTTACTAATCAATGATGTCCGA
Found at i:26372469 original size:50 final size:51
Alignment explanation
Indices: 26372308--26372487 Score: 195
Period size: 51 Copynumber: 3.5 Consensus size: 51
26372298 AGTAGTCTGT
* * * *
26372308 ACATAGTACTATACATGTGACCATTACCATACGATACACGTAGTAGCCTAC
1 ACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTAC
* * * * * *
26372359 ACATAGTACTACACACGTGATCGA-AACTATCCGATACGCATAGTAGCCTGC
1 ACATAGTACTACACATGTGA-CCATCACTATCCGATACACGTAGTAGCCTAC
* * *
26372410 ATATAGTACTACACATGCGACCTATCA-T-TCCGGTACACGTAGTAGCCTAC
1 ACATAGTACTACACATGTGACC-ATCACTATCCGATACACGTAGTAGCCTAC
*
26372460 ACATCGTACTACACATGTGACCATCACT
1 ACATAGTACTACACATGTGACCATCACT
26372488 TTCACTTTTA
Statistics
Matches: 104, Mismatches: 21, Indels: 9
0.78 0.16 0.07
Matches are distributed among these distances:
49 4 0.04
50 39 0.38
51 58 0.56
52 3 0.03
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (51 bp):
ACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTAC
Found at i:26375280 original size:42 final size:42
Alignment explanation
Indices: 26375200--26375281 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
26375190 CATTTTCTCT
* **
26375200 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
26375242 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
26375282 CACACTGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 33 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:26378353 original size:20 final size:20
Alignment explanation
Indices: 26378325--26378373 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
26378315 ATATTTATAG
*
26378325 TTCCGATGGAACATGAAGTT
1 TTCCAATGGAACATGAAGTT
26378345 TTCCAATGGAACATGAAGTT
1 TTCCAATGGAACATGAAGTT
26378365 TTCCAATGG
1 TTCCAATGG
26378374 GTGGTTCCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (20 bp):
TTCCAATGGAACATGAAGTT
Found at i:26380706 original size:17 final size:17
Alignment explanation
Indices: 26380686--26380728 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
26380676 ATCATATCTC
26380686 GCATATAAACAAAG-TT
1 GCATATAAACAAAGCTT
* *
26380702 AGCATATATACACAGCTT
1 -GCATATAAACAAAGCTT
26380720 GCATATAAA
1 GCATATAAA
26380729 AATAGTTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 20 0.91
18 2 0.09
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.26
Consensus pattern (17 bp):
GCATATAAACAAAGCTT
Found at i:26383373 original size:18 final size:20
Alignment explanation
Indices: 26383350--26383388 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26383340 ATGAAACCAA
26383350 AGTTAAAT-AT-AATATTAT
1 AGTTAAATCATAAATATTAT
*
26383368 AGTTAACTCATAAATATTAT
1 AGTTAAATCATAAATATTAT
26383388 A
1 A
26383389 TAATAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
20 9 0.50
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (20 bp):
AGTTAAATCATAAATATTAT
Found at i:26386277 original size:71 final size:70
Alignment explanation
Indices: 26386156--26386306 Score: 176
Period size: 71 Copynumber: 2.1 Consensus size: 70
26386146 ATAAACCGTA
** * * * * *
26386156 ACAATGTTTTGTGCCCAGCGCTAGTCAGATTAAGCGACAATAGATGTGCCCAGCACTGGTCGGGT
1 ACAATGTTTTGCACCCAGCGCTAGTCAGATAAAGCGACAATAGATCTGCCCAGCA-TAGTCAGAT
26386221 AAACTG
65 AAACTG
* * * * *
26386227 ACAATGTTTTGCACCCAGCGCTATTCGGATAAATCGACAATAGGTCTGCCCTGCATAGTCAGATA
1 ACAATGTTTTGCACCCAGCGCTAGTCAGATAAAGCGACAATAGATCTGCCCAGCATAGTCAGATA
*
26386292 AATTG
66 AACTG
26386297 ACAATGTTTT
1 ACAATGTTTT
26386307 ACACTGGATA
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
70 21 0.31
71 46 0.69
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (70 bp):
ACAATGTTTTGCACCCAGCGCTAGTCAGATAAAGCGACAATAGATCTGCCCAGCATAGTCAGATA
AACTG
Found at i:26389555 original size:17 final size:17
Alignment explanation
Indices: 26389535--26389574 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
26389525 TTGTAGTTTC
26389535 AAAAAAATTC-AAAGAA
1 AAAAAAATTCAAAAGAA
26389551 AAAAAAA-TCGAAAAGAA
1 AAAAAAATTC-AAAAGAA
26389568 AAAAAAA
1 AAAAAAA
26389575 ATATTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.09
16 7 0.32
17 13 0.59
ACGTcount: A:0.80, C:0.05, G:0.07, T:0.07
Consensus pattern (17 bp):
AAAAAAATTCAAAAGAA
Found at i:26403301 original size:33 final size:32
Alignment explanation
Indices: 26403250--26403323 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 32
26403240 AAGTTTTTAT
* *
26403250 AAAATATTTTTAAGAAATTTATT-AAATAAGAAA
1 AAAATA-TTTTAAGAAATTCATTCAAA-AACAAA
* *
26403283 AAAATATTTTACATAAATTCATTCAAAAACTAA
1 AAAATATTTTA-AGAAATTCATTCAAAAACAAA
26403316 AAAATATT
1 AAAATATT
26403324 AACTTAAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
32 5 0.14
33 27 0.77
34 3 0.09
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (32 bp):
AAAATATTTTAAGAAATTCATTCAAAAACAAA
Found at i:26404167 original size:28 final size:28
Alignment explanation
Indices: 26404127--26404181 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
26404117 GAATTCCTCG
26404127 TAATCATCATCATCAAGAAAATGAGTCA
1 TAATCATCATCATCAAGAAAATGAGTCA
26404155 TAATCATCATCATCAAGAAAATGAGTC
1 TAATCATCATCATCAAGAAAATGAGTC
26404182 TTCCCCTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.25
Consensus pattern (28 bp):
TAATCATCATCATCAAGAAAATGAGTCA
Found at i:26407064 original size:28 final size:28
Alignment explanation
Indices: 26407031--26407118 Score: 131
Period size: 28 Copynumber: 3.1 Consensus size: 28
26407021 GTATCAGTAT
*
26407031 AGTGTGGGCCTTAGCCCATTACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
*
26407059 AGTGTGGGCCCTAGCCCAATACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
* *
26407087 AATGTGGGCCTTAGCTCAATACAGTAATC
1 AGTGTGGGCCTTAGCCCAATACAGTAA-C
26407116 AGT
1 AGT
26407119 ACAATACAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 50 0.94
29 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAC
Found at i:26407482 original size:27 final size:27
Alignment explanation
Indices: 26407452--26407514 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
26407442 TTTCATCTCC
* *
26407452 TAGGGGTATAACGGTCATTTTACCCTA
1 TAGGGGTATAACAGACATTTTACCCTA
** *
26407479 TAGGGGTATTTCAGACATTTTACCCTT
1 TAGGGGTATAACAGACATTTTACCCTA
*
26407506 TGGGGGTAT
1 TAGGGGTAT
26407515 TTTGGTCCTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (27 bp):
TAGGGGTATAACAGACATTTTACCCTA
Found at i:26407515 original size:27 final size:27
Alignment explanation
Indices: 26407467--26407681 Score: 188
Period size: 27 Copynumber: 8.0 Consensus size: 27
26407457 GTATAACGGT
* *
26407467 CATTTTACCCTAT-AGGGGTATTTCAGA
1 CATTTTACCCTTTGA-GGGTATTTCGGA
* * *
26407494 CATTTTACCCTTTGGGGGTATTTTGGT
1 CATTTTACCCTTTGAGGGTATTTCGGA
* * * *
26407521 CCTTTTACCATTCGAGGGTATTTTGGTA
1 CATTTTACCCTTTGAGGGTATTTCGG-A
*
26407549 -ATTTTACCCTTTGAGGGTATTTCGGT
1 CATTTTACCCTTTGAGGGTATTTCGGA
* * *
26407575 CATTTTACCCTTCGGGGGTATTTCAGTA
1 CATTTTACCCTTTGAGGGTATTTC-GGA
*
26407603 -ATTTTACCTTTTGAGGGTATTTC-GA
1 CATTTTACCCTTTGAGGGTATTTCGGA
*
26407628 TAATTTTACCCTTTGAGGGTATTTC-GA
1 -CATTTTACCCTTTGAGGGTATTTCGGA
* * *
26407655 TAATTTTACCCTTCGAGCGTATTTCGG
1 -CATTTTACCCTTTGAGGGTATTTCGG
26407682 TCCCATTACG
Statistics
Matches: 155, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.01
27 152 0.98
28 2 0.01
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
CATTTTACCCTTTGAGGGTATTTCGGA
Found at i:26407540 original size:54 final size:54
Alignment explanation
Indices: 26407463--26407683 Score: 268
Period size: 54 Copynumber: 4.1 Consensus size: 54
26407453 AGGGGTATAA
* *
26407463 CGGTCATTTTACCCTATAG-GGGTATTTCAG-ACATTTTACCCTTTGGGGGTATTT
1 CGGTCATTTTACCCT-TCGAGGGTATTTCAGTA-ATTTTACCCTTTGAGGGTATTT
* * * **
26407517 TGGTCCTTTTACCATTCGAGGGTATTTTGGTAATTTTACCCTTTGAGGGTATTT
1 CGGTCATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTT
* *
26407571 CGGTCATTTTACCCTTCGGGGGTATTTCAGTAATTTTACCTTTTGAGGGTATTT
1 CGGTCATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTT
* * * * *
26407625 CGATAATTTTACCCTTTGAGGGTATTTC-GATAATTTTACCCTTCGAGCGTATTT
1 CGGTCATTTTACCCTTCGAGGGTATTTCAG-TAATTTTACCCTTTGAGGGTATTT
26407679 CGGTC
1 CGGTC
26407684 CCATTACGGC
Statistics
Matches: 141, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
53 3 0.02
54 137 0.97
55 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (54 bp):
CGGTCATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTT
Found at i:26407592 original size:81 final size:81
Alignment explanation
Indices: 26407468--26407684 Score: 274
Period size: 81 Copynumber: 2.7 Consensus size: 81
26407458 TATAACGGTC
* * * * *
26407468 ATTTTACCCTAT-AGGGGTATTTCAGACATTTTACCCTTTGGGGGTATTTTGGTCCTTTTACCAT
1 ATTTTACCCTTTGA-GGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCCTTTTACCAT
* *
26407532 TCGAGGGTATTTTGGTA
65 TCGAGGGTATTTCGATA
* ** *
26407549 ATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCAGTAATTTTACCTTT
1 ATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCCTTTTACCATT
*
26407614 TGAGGGTATTTCGATA
66 CGAGGGTATTTCGATA
* * * *
26407630 ATTTTACCCTTTGAGGGTATTTCGATAATTTTACCCTTCGAGCGTATTTCGGTCC
1 ATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCC
26407685 CATTACGGCC
Statistics
Matches: 116, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 115 0.99
82 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (81 bp):
ATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTCGGTCCTTTTACCATT
CGAGGGTATTTCGATA
Found at i:26408375 original size:35 final size:35
Alignment explanation
Indices: 26408335--26408403 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
26408325 AAAAAGATTA
*
26408335 TTCGGCCA-AAGAAGAAAA-AAAGAAGAGAAGAAAGG
1 TTCGGCCAGAAGAA-AAAAGAAA-AAGAAAAGAAAGG
26408370 TTCGGCCAGAAGAAAAAAGAAAAAGAAAAGAAAG
1 TTCGGCCAGAAGAAAAAAGAAAAAGAAAAGAAAG
26408404 TAAAATGAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 23 0.74
36 8 0.26
ACGTcount: A:0.59, C:0.09, G:0.26, T:0.06
Consensus pattern (35 bp):
TTCGGCCAGAAGAAAAAAGAAAAAGAAAAGAAAGG
Found at i:26413882 original size:17 final size:16
Alignment explanation
Indices: 26413860--26413892 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
26413850 TCAAAGTCTC
26413860 CCTACAGTTTCCAGTTT
1 CCTACAGTTT-CAGTTT
26413877 CCTACAGTTTCAGTTT
1 CCTACAGTTTCAGTTT
26413893 ACTCTAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.42
Consensus pattern (16 bp):
CCTACAGTTTCAGTTT
Found at i:26414719 original size:28 final size:28
Alignment explanation
Indices: 26414680--26414768 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
26414670 TATCCAGTAC
*
26414680 CAGT-ACAGTGTGGGCCTTAGCCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* *
26414707 CAGTAACAGTGTGGGACTTAGCTCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* * * * *
26414735 TAGTAATAATGTGGGCCTTAGTCCAGTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
26414763 CAGTAA
1 CAGTAA
26414769 TTAGTACAAT
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
27 4 0.08
28 46 0.92
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:26414911 original size:26 final size:26
Alignment explanation
Indices: 26414882--26414952 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
26414872 CTAATATCGT
* * *
26414882 AGCAACGCTGCTAGTAATAATAATGC
1 AGCAAAGCTGCGAGTAACAATAATGC
*
26414908 AGCAAAGCTGCGAGTAACAGTAATGC
1 AGCAAAGCTGCGAGTAACAATAATGC
* * *
26414934 AACAAAGCTACCAGTAACA
1 AGCAAAGCTGCGAGTAACA
26414953 GTATATGTGG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.17
Consensus pattern (26 bp):
AGCAAAGCTGCGAGTAACAATAATGC
Found at i:26414953 original size:26 final size:26
Alignment explanation
Indices: 26414902--26414955 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26414892 CTAGTAATAA
* * *
26414902 TAATGCAGCAAAGCTGCGAGTAACAG
1 TAATGCAACAAAGCTACCAGTAACAG
26414928 TAATGCAACAAAGCTACCAGTAACAG
1 TAATGCAACAAAGCTACCAGTAACAG
26414954 TA
1 TA
26414956 TATGTGGCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.17
Consensus pattern (26 bp):
TAATGCAACAAAGCTACCAGTAACAG
Found at i:26415044 original size:32 final size:32
Alignment explanation
Indices: 26415003--26415070 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
26414993 TATCAGAATC
*
26415003 TCATGTCATAAATCATACGTGTATCTAGTATG
1 TCATGTCATAAACCATACGTGTATCTAGTATG
*
26415035 TCATGTCATAAACCATACGTGTATGTAGTATG
1 TCATGTCATAAACCATACGTGTATCTAGTATG
26415067 TCAT
1 TCAT
26415071 ACTCAGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (32 bp):
TCATGTCATAAACCATACGTGTATCTAGTATG
Found at i:26415325 original size:108 final size:107
Alignment explanation
Indices: 26415163--26415443 Score: 379
Period size: 108 Copynumber: 2.6 Consensus size: 107
26415153 TATAACAGTC
* * * *
26415163 ATTTTACCCTATAGGGGTATTTCGGTCATTTTATCCTTCGGGGGTATTTCAGACATTTTACCCTT
1 ATTTTACCCTATAAGGGTATTTC-GTCATTTTACCCTTCGAGGGTATTTTAGACATTTTACCCTT
** * * *
26415228 TGGGGGTATTTTGGTCATTTTACCATTTAGGGATATTTTGGTA
65 CAGGGGTATTTTGATCATTTTACCATTCAGGGATATTTTGATA
26415271 ATTTTACCCTATAAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTTAGACATTTTACCCTT
1 ATTTTACCCTATAAGGGTATTTC-GTCATTTTACCCTTCGAGGGTATTTTAGACATTTTACCCTT
26415336 CAGGGGTATTTTGATCATTTTACCATTCAGGGATATTTTGATA
65 CAGGGGTATTTTGATCATTTTACCATTCAGGGATATTTTGATA
* * * *
26415379 ATTTTACCCT-TCGAGGGTATTTCGATAATTTTAGCTTTC-AGGGTATTTTAGTA-ATTTTACCC
1 ATTTTACCCTAT-AAGGGTATTTCG-TCATTTTACCCTTCGAGGGTATTTTAG-ACATTTTACCC
26415441 TTC
63 TTC
26415444 GAGAGTTTTC
Statistics
Matches: 156, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
107 26 0.17
108 130 0.83
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (107 bp):
ATTTTACCCTATAAGGGTATTTCGTCATTTTACCCTTCGAGGGTATTTTAGACATTTTACCCTTC
AGGGGTATTTTGATCATTTTACCATTCAGGGATATTTTGATA
Found at i:26415488 original size:27 final size:27
Alignment explanation
Indices: 26415163--26415510 Score: 273
Period size: 27 Copynumber: 13.0 Consensus size: 27
26415153 TATAACAGTC
* *
26415163 ATTTTACCCTATAG-GGGTATTTCGGTC
1 ATTTTACCCT-TCGAGGGTATTTCGGTA
* * *
26415190 ATTTTATCCTTCGGGGGTATTTCAG-A
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * * *
26415216 CATTTTACCCTTTGGGGGTATTTTGGTC
1 -ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
26415244 ATTTTACCATT-TAGGGATATTTTGGTA
1 ATTTTACCCTTCGAGGG-TATTTCGGTA
* * *
26415271 ATTTTACCCTAT-AAGGGTATTTCAGTC
1 ATTTTACCCT-TCGAGGGTATTTCGGTA
**
26415298 ATTTTACCCTTCGAGGGTATTTTAG-A
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
26415324 CATTTTACCCTTC-AGGGGTATTTTGATC
1 -ATTTTACCCTTCGA-GGGTATTTCGGTA
* * *
26415352 ATTTTACCATTC-AGGGATATTTTGATA
1 ATTTTACCCTTCGAGGG-TATTTCGGTA
*
26415379 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * **
26415406 ATTTTAGCTTTC-AGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
26415432 ATTTTACCCTTCGAGAGT-TTTCAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
26415458 ATTTTACCCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* **
26415485 ATTTTACCATTCGTTGGTATTTCGGT
1 ATTTTACCCTTCGAGGGTATTTCGGT
26415511 CCCATTATAG
Statistics
Matches: 266, Mismatches: 42, Indels: 26
0.80 0.13 0.08
Matches are distributed among these distances:
26 55 0.21
27 202 0.76
28 9 0.03
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGGTA
Found at i:26418986 original size:21 final size:23
Alignment explanation
Indices: 26418943--26418988 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
26418933 GCTGCCGAAA
**
26418943 TTAAATAGATGATATAATGCTCC
1 TTAAATAGATGATATAAACCTCC
26418966 TTAAAT-GATG-TATAAACCTCC
1 TTAAATAGATGATATAAACCTCC
26418987 TT
1 TT
26418989 TGTAACAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.52
22 4 0.19
23 6 0.29
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (23 bp):
TTAAATAGATGATATAAACCTCC
Found at i:26419543 original size:50 final size:52
Alignment explanation
Indices: 26419417--26419548 Score: 144
Period size: 50 Copynumber: 2.6 Consensus size: 52
26419407 AAACTAAATG
* *
26419417 AGTTACTTAATGCA-AAGGCTTAATTTAATGATGCAGACTTAAACTAACATGGG
1 AGTTACTTAATGCATAA--CTTTATTTAATGATGCAGACTTAAACTAACATGGA
* ** * * *
26419470 AGTTACATAATGCATGTCATTATTT-ATGATGCATACTT-AACTAGCATGGA
1 AGTTACTTAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATGGA
*
26419520 AGTTACTTAATGCATAACTTTATTAAATG
1 AGTTACTTAATGCATAACTTTATTTAATG
26419549 CAAAACACAC
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
50 30 0.47
51 15 0.23
52 6 0.09
53 13 0.20
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (52 bp):
AGTTACTTAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATGGA
Found at i:26425099 original size:23 final size:23
Alignment explanation
Indices: 26425073--26425132 Score: 120
Period size: 23 Copynumber: 2.6 Consensus size: 23
26425063 ACAGAATGCG
26425073 ATTTTTATAAAACAATCATGCAA
1 ATTTTTATAAAACAATCATGCAA
26425096 ATTTTTATAAAACAATCATGCAA
1 ATTTTTATAAAACAATCATGCAA
26425119 ATTTTTATAAAACA
1 ATTTTTATAAAACA
26425133 TCCTACCCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.48, C:0.12, G:0.03, T:0.37
Consensus pattern (23 bp):
ATTTTTATAAAACAATCATGCAA
Found at i:26425234 original size:20 final size:20
Alignment explanation
Indices: 26425202--26425263 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
26425192 CCAATTTGTG
*
26425202 GACAAACCACCAATAATGCA
1 GACAAGCCACCAATAATGCA
** * **
26425222 GACAAGCTTCCAATTATGTG
1 GACAAGCCACCAATAATGCA
*
26425242 GACAAGCCACCAGTAATGCA
1 GACAAGCCACCAATAATGCA
26425262 GA
1 GA
26425264 TATGCTTCTA
Statistics
Matches: 30, Mismatches: 12, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.26, G:0.18, T:0.16
Consensus pattern (20 bp):
GACAAGCCACCAATAATGCA
Found at i:26425287 original size:40 final size:39
Alignment explanation
Indices: 26425192--26425297 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 39
26425182 CATCCAAACA
*
26425192 CCAATTTGTGGACAAACCACCAATAATGCAGACAAGCTT
1 CCAATTTGTGGACAAGCCACCAATAATGCAGACAAGCTT
* * *
26425231 CCAATTATGTGGACAAGCCACCAGTAATGCAGATATGCTT
1 CCAATT-TGTGGACAAGCCACCAATAATGCAGACAAGCTT
* * *
26425271 CTAGTATTGTGCACAAGCCA-CAATAAT
1 CCAAT-TTGTGGACAAGCCACCAATAAT
26425298 ACAAATAAGC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
39 12 0.21
40 44 0.77
41 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (39 bp):
CCAATTTGTGGACAAGCCACCAATAATGCAGACAAGCTT
Done.