Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 92 of 214
Found at i:26429324 original size:10 final size:10
Alignment explanation
Indices: 26429309--26429337 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
26429299 TCATTTCATG
26429309 CATTGCATTA
1 CATTGCATTA
26429319 CATTGCATTA
1 CATTGCATTA
26429329 CA-TGCATTA
1 CATTGCATTA
26429338 AAATCCATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.37
10 12 0.63
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (10 bp):
CATTGCATTA
Found at i:26431355 original size:25 final size:23
Alignment explanation
Indices: 26431298--26431355 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
26431288 TGAGCTCAAA
26431298 AAAATCAAAAAATAAAAAAAATC
1 AAAATCAAAAAATAAAAAAAATC
** * *
26431321 AATAAAAAAACAAAGAAGAAAAATC
1 AA-AATCAAA-AAATAAAAAAAATC
26431346 AAAATCAAAA
1 AAAATCAAAA
26431356 TCAAGGTCAA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
23 3 0.11
24 10 0.37
25 14 0.52
ACGTcount: A:0.78, C:0.09, G:0.03, T:0.10
Consensus pattern (23 bp):
AAAATCAAAAAATAAAAAAAATC
Found at i:26431771 original size:15 final size:15
Alignment explanation
Indices: 26431747--26431776 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26431737 CACAGTTTGT
*
26431747 CAATGTATTGCAAAA
1 CAATGAATTGCAAAA
26431762 CAATGAATTGCAAAA
1 CAATGAATTGCAAAA
26431777 ATGACTGAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.23
Consensus pattern (15 bp):
CAATGAATTGCAAAA
Found at i:26432305 original size:6 final size:7
Alignment explanation
Indices: 26432286--26432328 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
26432276 AAAAAAATGG
26432286 TGAAAAA
1 TGAAAAA
26432293 TGAAAAA
1 TGAAAAA
26432300 TGAAAAA
1 TGAAAAA
26432307 TG-AAAA
1 TGAAAAA
26432313 TGAAAAA
1 TGAAAAA
26432320 -GTAAAAA
1 TG-AAAAA
26432327 TG
1 TG
26432329 GAGAGGCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 7 0.21
7 25 0.76
8 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:26432312 original size:20 final size:20
Alignment explanation
Indices: 26432289--26432328 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26432279 AAAATGGTGA
26432289 AAAATGAAAAA-TGAAAAATG
1 AAAATGAAAAAGT-AAAAATG
26432309 AAAATGAAAAAGTAAAAATG
1 AAAATGAAAAAGTAAAAATG
26432329 GAGAGGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAATGAAAAAGTAAAAATG
Found at i:26433806 original size:44 final size:44
Alignment explanation
Indices: 26433709--26434049 Score: 136
Period size: 44 Copynumber: 7.3 Consensus size: 44
26433699 GGAGATGGTG
**
26433709 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
* * * *
26433753 AATCCTATCTGCTTGAGATTACAGTGGAGCGGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAAT--AGT
* * * *** *
26433797 GATCTTATCTCTCTGA-AGTTATAGTAGAGTAGATCTCATCAGATTGAAGCCAGA
1 AATCTTATCTCCCTGAGA-TTACAGT-G-G-AG-------CAGATTGAAAATAGT
* * * **
26433851 AATCTTATCTCCCTGATATTACAGCGGAGTAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
* *
26433895 AATCCTATCTCCCTGAGATTACAGTGCAGCAGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAAT--AGT
* * * ** *
26433939 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCTAGA
1 AATCTTATCTCCCTGAGA-TTACAGT---G--GA--G---CAGATTGAAAATAGT
* **
26433993 AATCTTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
*
26434037 AATCCTATCTCCC
1 AATCTTATCTCCC
26434050 AAGTGGTGCA
Statistics
Matches: 221, Mismatches: 44, Indels: 64
0.67 0.13 0.19
Matches are distributed among these distances:
43 9 0.04
44 133 0.60
45 5 0.02
46 1 0.00
47 4 0.02
49 3 0.01
51 4 0.02
52 1 0.00
53 5 0.02
54 48 0.22
55 8 0.04
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
Found at i:26433965 original size:142 final size:142
Alignment explanation
Indices: 26433709--26434049 Score: 574
Period size: 142 Copynumber: 2.4 Consensus size: 142
26433699 GGAGATGGTG
* *
26433709 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTGCTTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
* * * * *
26433774 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCTCATCAG
66 CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
26433839 ATTGAAGCCAGA
131 ATTGAAGCCAGA
* * *
26433851 AATCTTATCTCCCTGATATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
26433916 CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
*
26433981 ATTGAAGCTAGA
131 ATTGAAGCCAGA
*
26433993 AATCTTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCC
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCC
26434050 AAGTGGTGCA
Statistics
Matches: 184, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 184 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (142 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
ATTGAAGCCAGA
Found at i:26434140 original size:50 final size:50
Alignment explanation
Indices: 26434067--26434425 Score: 292
Period size: 50 Copynumber: 7.2 Consensus size: 50
26434057 GCAGTAGAGT
* *
26434067 AGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * *
26434117 AGATTAAAGCTACAACAGCGAATCTTAC-TCCCCAGGCGA-TGCAGTGAAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCC-GAC-ATTGCAGTTAAAA
* * * *
26434167 AGATTAAAGCCACATCGGTGAATCTTGCTTTCTCGACATTGCAGCTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * * ** *
26434217 GGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
26434267 AGATTAAAGCCACAACGGTGAATCTTG-TCTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCT-TCCCCGACATTGCAGTTAAAA
* * * * * * ** * * * **
26434317 AGACTAAAGCCACAACTGTGAGTGTTACTTCCCTGGTAATCCAGTGAAGT
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
26434367 AGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTCCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
26434417 GGATTAAAG
1 AGATTAAAG
26434426 TGACCACGAC
Statistics
Matches: 231, Mismatches: 72, Indels: 12
0.73 0.23 0.04
Matches are distributed among these distances:
49 7 0.03
50 219 0.95
51 5 0.02
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:26434182 original size:100 final size:100
Alignment explanation
Indices: 26434067--26434576 Score: 494
Period size: 100 Copynumber: 5.1 Consensus size: 100
26434057 GCAGTAGAGT
* * *
26434067 AGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
26434132 CAGCGAATCTTACTCCCCAGGC-GATGCAGTGAAAC
66 CAGCGAATCTTACTCCCCAGGCAG-TGCAGTGAAAC
* * * *
26434167 AGATTAAAGCCACATCGGTGAATCTTGCTTTCTCGACATTGCAGCTAAAAGGATTAAAGCTACAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
* *
26434232 CAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
66 CAGCGAATCTTACTCCCCAGGCAGTGCAGTGAAAC
* * *
26434267 AGATTAAAGCCACAACGGTGAATCTTG-TCTCCCTGACATTGCAGTTAAAAAGACTAAAGCCACA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCC-GACATTGCAGTTAAAAAGATTAAAGCTACA
* * * * * * * * * **
26434331 ACTGTGAGTGTTACTTCCCTGGTAATCCAGTGAAGT
65 ACAGCGAATCTTACTCCCCAGGCAGTGCAGTGAAAC
* * * *
26434367 AGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTCCAGTTAAAAGGATTAAAG-TGACC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCT-ACA
* * ** *
26434431 AC-GACGAATCTCACTCTCTCAACCAGTGCAGT-AGAGC
65 ACAG-CGAATCTTACTC-CCCAGGCAGTGCAGTGA-AAC
* * * ** **
26434468 AGATTAAAGCCATAACAGTGAATCTTGCTTTTCCGACATTGCAGCGAAGCAGATTAAAG-TCACA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCT-ACA
* * * * *
26434532 A-TGACAAATATTACTTTCCCAGGCAGTGCAGTGGAAC
65 ACAG-CGAATCTTAC-TCCCCAGGCAGTGCAGTGAAAC
26434569 AGATTAAA
1 AGATTAAA
26434577 ACTACAACAG
Statistics
Matches: 334, Mismatches: 66, Indels: 19
0.80 0.16 0.05
Matches are distributed among these distances:
99 5 0.01
100 228 0.68
101 100 0.30
102 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (100 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
CAGCGAATCTTACTCCCCAGGCAGTGCAGTGAAAC
Found at i:26438649 original size:15 final size:14
Alignment explanation
Indices: 26438614--26438661 Score: 62
Period size: 15 Copynumber: 3.4 Consensus size: 14
26438604 GTCTCTTTAG
*
26438614 GCATT-CATTTCAT
1 GCATTGCATTACAT
26438627 GCATTTGCATTACATT
1 GCA-TTGCATTACA-T
26438643 GCATTGCATTACAT
1 GCATTGCATTACAT
26438657 GCATT
1 GCATT
26438662 AAAATCCATT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
13 3 0.10
14 8 0.26
15 16 0.52
16 4 0.13
ACGTcount: A:0.25, C:0.21, G:0.12, T:0.42
Consensus pattern (14 bp):
GCATTGCATTACAT
Found at i:26440648 original size:17 final size:17
Alignment explanation
Indices: 26440626--26440662 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26440616 CTATGAGCTC
26440626 AAAAAAATCAA-AAAATA
1 AAAAAAATCAATAAAA-A
26440643 AAAAAAATCAATAAAAA
1 AAAAAAATCAATAAAAA
26440660 AAA
1 AAA
26440663 CAAAGAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.84, C:0.05, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAAAATCAATAAAAA
Found at i:26440655 original size:13 final size:13
Alignment explanation
Indices: 26440639--26440679 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
26440629 AAAATCAAAA
26440639 AATAAAAAAAATC
1 AATAAAAAAAATC
26440652 AATAAAAAAAA-C
1 AATAAAAAAAATC
26440664 AA-AGAAGAAAAATC
1 AATA-AA-AAAAATC
26440678 AA
1 AA
26440680 AATCAAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 1 0.04
12 5 0.20
13 16 0.64
14 3 0.12
ACGTcount: A:0.78, C:0.07, G:0.05, T:0.10
Consensus pattern (13 bp):
AATAAAAAAAATC
Found at i:26440687 original size:26 final size:23
Alignment explanation
Indices: 26440629--26440687 Score: 57
Period size: 26 Copynumber: 2.4 Consensus size: 23
26440619 TGAGCTCAAA
*
26440629 AAAATCAAAAAATAAAAAAAATC
1 AAAATCAAAAAAAAAAAAAAATC
*
26440652 AATAA-AAAAAACAAAGAAGAAAAATC
1 AA-AATCAAAAA-AAA-AA-AAAAATC
26440678 AAAATCAAAA
1 AAAATCAAAA
26440688 TCAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
23 7 0.25
24 4 0.14
25 4 0.14
26 13 0.46
ACGTcount: A:0.78, C:0.08, G:0.03, T:0.10
Consensus pattern (23 bp):
AAAATCAAAAAAAAAAAAAAATC
Found at i:26441637 original size:6 final size:7
Alignment explanation
Indices: 26441618--26441660 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
26441608 AAAAAAATGG
26441618 TGAAAAA
1 TGAAAAA
26441625 TGAAAAA
1 TGAAAAA
26441632 TGAAAAA
1 TGAAAAA
26441639 TG-AAAA
1 TGAAAAA
26441645 TGAAAAA
1 TGAAAAA
26441652 -GTAAAAA
1 TG-AAAAA
26441659 TG
1 TG
26441661 GAGAGGCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 7 0.21
7 25 0.76
8 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:26441644 original size:20 final size:20
Alignment explanation
Indices: 26441621--26441660 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26441611 AAAATGGTGA
26441621 AAAATGAAAAA-TGAAAAATG
1 AAAATGAAAAAGT-AAAAATG
26441641 AAAATGAAAAAGTAAAAATG
1 AAAATGAAAAAGTAAAAATG
26441661 GAGAGGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAATGAAAAAGTAAAAATG
Found at i:26443218 original size:142 final size:142
Alignment explanation
Indices: 26443042--26443382 Score: 565
Period size: 142 Copynumber: 2.4 Consensus size: 142
26443032 AGAGATGGTG
* * *
26443042 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTCATCCTATCTGCTTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
* * * * *
26443107 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCTCATCAG
66 CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTAGATCGCATCAG
26443172 ATTGAAGCCAGA
131 ATTGAAGCCAGA
*
26443184 AATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
26443249 CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTAGATCGCATCAG
*
26443314 ATTGAAGCTAGA
131 ATTGAAGCCAGA
* * *
26443326 AATCTTTTCTCCTTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCC
1 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCC
26443383 AAGTGGTGCA
Statistics
Matches: 185, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
142 185 1.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (142 bp):
AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
CAGTGCAGCAGATTAAAATAAAGGATCTTATCTCTATAAAGTTACAGTAGAGTAGATCGCATCAG
ATTGAAGCCAGA
Found at i:26443262 original size:44 final size:44
Alignment explanation
Indices: 26443169--26443262 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
26443159 TAGATCTCAT
* *
26443169 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGCAG
* * * *
26443213 TAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGCAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGCAG
26443257 CAGATT
1 CAGATT
26443263 AAAATAAAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (44 bp):
CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGCAG
Found at i:26443473 original size:50 final size:50
Alignment explanation
Indices: 26443400--26443865 Score: 301
Period size: 50 Copynumber: 9.3 Consensus size: 50
26443390 GCAGTAGAGT
* *
26443400 AGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * *
26443450 AGATTAAAGCTACAACAGCGAATCTTAC-TCCCCAGGCGA-TGCAGTGAAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCC-GAC-ATTGCAGTTAAAA
* * * *
26443500 AGATTAAAGCCACATCGGTGAATCTTGCTTTCTCGACATTGCAGCTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * * ** *
26443550 GGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
26443600 AGATTAAAGCCACAACGGTGAATCTTG-TCTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCT-TCCCCGACATTGCAGTTAAAA
* * * * * * ** * * * **
26443650 AGACTAAAGCCACAACTGTGAGTGTTACTTCCCTGGTAATCCAGTGAAGT
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
26443700 AGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTCCAGTTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
** * ** ** * * * * **
26443750 AGATTAAAGTGACCACGACGAATCTCACTCTCTCAGCCAGTGCAG-TAGAGC
1 AGATTAAAGCCACAACGGTGAATCTTGCT-TCCCCGACATTGCAGTTA-AAA
* * * ** *
26443801 AGATTAAAGTCATAACAGTGAATCTTGCTTTTCCGACATTGCAGCTAAAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* *
26443851 GGATTAAAGTCACAA
1 AGATTAAAGCCACAA
26443866 TGACAAATCT
Statistics
Matches: 304, Mismatches: 103, Indels: 18
0.72 0.24 0.04
Matches are distributed among these distances:
49 7 0.02
50 259 0.85
51 38 0.12
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:26443515 original size:100 final size:100
Alignment explanation
Indices: 26443400--26443909 Score: 523
Period size: 100 Copynumber: 5.1 Consensus size: 100
26443390 GCAGTAGAGT
* * *
26443400 AGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
*
26443465 CAGCGAATCTTACTCCCCAGGCGATGCAGTGAAAC
66 CAGCGAATCTTACTTCCCAGGCGATGCAGTGAAAC
* * * *
26443500 AGATTAAAGCCACATCGGTGAATCTTGCTTTCTCGACATTGCAGCTAAAAGGATTAAAGCTACAA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
*
26443565 CAGCGAATCTTACTTCCCAGGC-AGTGCAGTGGAAC
66 CAGCGAATCTTACTTCCCAGGCGA-TGCAGTGAAAC
* * *
26443600 AGATTAAAGCCACAACGGTGAATCTTG-TCTCCCTGACATTGCAGTTAAAAAGACTAAAGCCACA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCC-GACATTGCAGTTAAAAAGATTAAAGCTACA
* * * * * ** * **
26443664 ACTGTGAGTGTTACTTCCCTGGTAATCCAGTGAAGT
65 ACAGCGAATCTTACTTCCCAGGCGATGCAGTGAAAC
* * *
26443700 AGATTAAAGCCACAACGGTAAATCTTGCTTTCCCGACATTCCAGTTAAAAAGATTAAAG-TGACC
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCT-ACA
* * * *
26443764 AC-GACGAATCTCACTCTCTCA-GCCAGTGCAGT-AGAGC
65 ACAG-CGAATCTTACT-TCCCAGGCGA-TGCAGTGA-AAC
* * * * * *
26443801 AGATTAAAGTCATAACAGTGAATCTTGCTTTTCCGACATTGCAGCTAAAAGGATTAAAG-TCACA
1 AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCT-ACA
* * * *
26443865 A-TGACAAATCTTACTTTCCCAGGCGGTGCAGTGGAAC
65 ACAG-CGAATCTTAC-TTCCCAGGCGATGCAGTGAAAC
26443902 AGATTAAA
1 AGATTAAA
26443910 ACTACGACAG
Statistics
Matches: 340, Mismatches: 57, Indels: 25
0.81 0.14 0.06
Matches are distributed among these distances:
99 6 0.02
100 230 0.68
101 101 0.30
102 3 0.01
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (100 bp):
AGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
CAGCGAATCTTACTTCCCAGGCGATGCAGTGAAAC
Found at i:26449947 original size:9 final size:9
Alignment explanation
Indices: 26449933--26449966 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
26449923 GGCTCCTACT
26449933 GAGTTGAAA
1 GAGTTGAAA
26449942 GAGTTGAAA
1 GAGTTGAAA
26449951 GAGTT-ACAA
1 GAGTTGA-AA
26449960 GAGTTGA
1 GAGTTGA
26449967 CAGAAATGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.41, C:0.03, G:0.32, T:0.24
Consensus pattern (9 bp):
GAGTTGAAA
Found at i:26462085 original size:75 final size:75
Alignment explanation
Indices: 26461993--26462138 Score: 181
Period size: 75 Copynumber: 1.9 Consensus size: 75
26461983 AATGATCTGC
* ** *
26461993 TTCATTATGTGTTTTGTTTGTTAAATGCATCTTTAT-TTAATGTTTTGCATTAATACATCTA-CA
1 TTCATTATGTGTTTTGTTTATTAAATGCATCTTT-TGTTAATACTTTACATTAATACAT-TAGCA
26462056 TCCTTTAAAATT
64 TCCTTTAAAATT
* **
26462068 TTCATTATGT-TTCTTGTTTATTGAATGTGTCTTTTGTTAATACTTTACATTAATACATTAGCAT
1 TTCATTATGTGTT-TTGTTTATTAAATGCATCTTTTGTTAATACTTTACATTAATACATTAGCAT
26462132 CCTTTAA
65 CCTTTAA
26462139 TACCTGCATT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
74 5 0.08
75 56 0.92
ACGTcount: A:0.26, C:0.12, G:0.10, T:0.52
Consensus pattern (75 bp):
TTCATTATGTGTTTTGTTTATTAAATGCATCTTTTGTTAATACTTTACATTAATACATTAGCATC
CTTTAAAATT
Found at i:26470633 original size:25 final size:25
Alignment explanation
Indices: 26470605--26470673 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 25
26470595 CCTGATATAT
26470605 GGCTCTTCGGAGCTTCCTAATTAAA
1 GGCTCTTCGGAGCTTCCTAATTAAA
* *
26470630 GGCTCTTTCAAGAGCTTCCTAATTAAT
1 GGCTC-TTC-GGAGCTTCCTAATTAAA
* *
26470657 GGCTCTCCGGACCTTCC
1 GGCTCTTCGGAGCTTCC
26470674 CAATAATTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 12 0.32
26 5 0.14
27 20 0.54
ACGTcount: A:0.20, C:0.29, G:0.19, T:0.32
Consensus pattern (25 bp):
GGCTCTTCGGAGCTTCCTAATTAAA
Found at i:26476965 original size:79 final size:81
Alignment explanation
Indices: 26476829--26477013 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
26476819 TTGAATGATG
* *
26476829 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
26476893 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26476908 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26476970 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
26476988 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26477014 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:26477027 original size:40 final size:40
Alignment explanation
Indices: 26476830--26477013 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
26476820 TGAATGATGT
* * * *
26476830 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26476870 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26476910 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
26476948 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26476989 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26477014 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26477035 original size:79 final size:79
Alignment explanation
Indices: 26476882--26477046 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
26476872 GGACTAAGAT
* * **
26476882 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
26476947 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26476961 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
26477024 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26477040 CCGAAGG
1 CCGAAGG
26477047 TATGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26479550 original size:14 final size:14
Alignment explanation
Indices: 26479531--26479590 Score: 68
Period size: 14 Copynumber: 4.1 Consensus size: 14
26479521 AGCCTCTAAC
26479531 TTACACAATGAATT
1 TTACACAATGAATT
26479545 TTACACAATGAATTT
1 TTACACAATGAA-TT
*
26479560 TCTATCACCCAT-AATT
1 T-TA-CA-CAATGAATT
26479576 TTACACAATGAATT
1 TTACACAATGAATT
26479590 T
1 T
26479591 ACTTACTCGA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 3 0.08
14 19 0.49
15 5 0.13
16 5 0.13
17 4 0.10
18 3 0.08
ACGTcount: A:0.38, C:0.18, G:0.05, T:0.38
Consensus pattern (14 bp):
TTACACAATGAATT
Found at i:26482278 original size:23 final size:22
Alignment explanation
Indices: 26482235--26482278 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
26482225 TTCTAAGTCG
26482235 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
26482258 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
26482279 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:26482387 original size:45 final size:45
Alignment explanation
Indices: 26482323--26482416 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
26482313 AACAGATACT
* * *
26482323 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
*
26482368 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
26482413 CGGT
1 CGGT
26482417 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
Found at i:26482479 original size:50 final size:50
Alignment explanation
Indices: 26482418--26482605 Score: 207
Period size: 50 Copynumber: 3.7 Consensus size: 50
26482408 ATGTTCGGTT
* * * *
26482418 CACATAGTAGCCTGCACATAGTGCTACACATGTGACCCTACCATCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCCTATCATCTGGTA
* *** * *
26482468 CACTTAGTAGCCTGCACATAGTACTACACACGTGATCGAAATTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCCTATCATCTGGTA
* * * *
26482519 CGCATAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTTCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCCTATCATCT-GGTA
* *
26482569 CACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC
26482606 ATCACTTTCA
Statistics
Matches: 110, Mismatches: 25, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
49 4 0.04
50 66 0.60
51 40 0.36
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCCTATCATCTGGTA
Found at i:26482595 original size:101 final size:101
Alignment explanation
Indices: 26482420--26482603 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 101
26482410 GTTCGGTTCA
* * *
26482420 CATAGTAGCCTGCACATAGTGCTACACATGTGACCCTACCATCTGATACACTTAGTAGCCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTGATACACGTAGTAGCCTGCAC
26482485 ATAGTACTACACACGTGATCGAAATTATCCGGTACG
66 ATAGTACTACACACGTGATCGAAATTATCCGGTACG
* * *
26482521 CATAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTTCGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCT-GATACACGTAGTAGCCTGCA
*
26482585 CTTAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
26482604 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
100 8 0.11
101 67 0.89
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAATTATCCGGTACG
Found at i:26485044 original size:20 final size:21
Alignment explanation
Indices: 26484991--26485046 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
26484981 TATGATCTTC
26484991 ATAGATATTTAGTA-TTGTACA
1 ATAGA-ATTTAGTATTTGTACA
*
26485012 ATA-AATGTT-GTATTTGTA-G
1 ATAGAAT-TTAGTATTTGTACA
26485031 ATAGAATTTAGTATTT
1 ATAGAATTTAGTATTT
26485047 AAAGCATGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
19 10 0.33
20 17 0.57
21 3 0.10
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.46
Consensus pattern (21 bp):
ATAGAATTTAGTATTTGTACA
Found at i:26487276 original size:29 final size:30
Alignment explanation
Indices: 26487235--26487296 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
26487225 ATTTATGAGC
26487235 TTTAGGGAAAAAG-TGTAAATATGCAAAAG
1 TTTAGGGAAAAAGTTGTAAATATGCAAAAG
** * * *
26487264 TTTAGGGGCAAAGTTGTAATTTTGCCAAAG
1 TTTAGGGAAAAAGTTGTAAATATGCAAAAG
26487294 TTT
1 TTT
26487297 GAGTCAAGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.32
Consensus pattern (30 bp):
TTTAGGGAAAAAGTTGTAAATATGCAAAAG
Found at i:26487513 original size:18 final size:17
Alignment explanation
Indices: 26487480--26487518 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
26487470 TTTTATAATT
26487480 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
26487498 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
26487515 TGTG
1 TGTG
26487519 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:26487766 original size:23 final size:23
Alignment explanation
Indices: 26487740--26487858 Score: 172
Period size: 23 Copynumber: 5.3 Consensus size: 23
26487730 GTGTTATTGA
26487740 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
26487763 TCAGTGGTAGCTACGGCTACATAT
1 TCAGTGGTAGCTTCGGCTACAT-T
26487787 T-AGTGGTAGCTTC-GCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
* *
26487807 TCAGTGGTAGCTACGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
*
26487830 TCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
26487853 TCAGTG
1 TCAGTG
26487859 TGACACTTAT
Statistics
Matches: 87, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
20 2 0.02
21 11 0.13
22 12 0.14
23 60 0.69
24 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:26487818 original size:44 final size:45
Alignment explanation
Indices: 26487739--26487858 Score: 206
Period size: 44 Copynumber: 2.6 Consensus size: 45
26487729 AGTGTTATTG
26487739 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACA-TTCAGTGGTAGCTACGGCTACAT
*
26487785 ATTAGTGGTAGCTTC-GCTACATTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTCAGTGGTAGCTACGGCTACAT
26487829 ATCAGTGGTAGCTTCGGCTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACAT-TCAGTG
26487859 TGACACTTAT
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
44 37 0.53
45 13 0.19
46 20 0.29
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (45 bp):
ATCAGTGGTAGCTTCGGCTACATTCAGTGGTAGCTACGGCTACAT
Found at i:26490562 original size:28 final size:28
Alignment explanation
Indices: 26490529--26490616 Score: 140
Period size: 28 Copynumber: 3.1 Consensus size: 28
26490519 GTATCAGTAT
*
26490529 AGTGTGGGCCTTAGCCCATTACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
26490557 AGTGTGGGCCTTAGCCCAATACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
* *
26490585 AATGTGGGCCTTAGCTCAATACAGTAATC
1 AGTGTGGGCCTTAGCCCAATACAGTAA-C
26490614 AGT
1 AGT
26490617 ACAATACAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
28 52 0.95
29 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAC
Found at i:26490771 original size:26 final size:26
Alignment explanation
Indices: 26490715--26490771 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
26490705 GCCAACACAC
* *
26490715 CAATATCGCAGCAAAGCTACCAGTGA
1 CAATAACGCAGCAAAGCTACCAGTAA
* * *
26490741 TAATAACGTAGCAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTACCAGTAA
26490767 CAATA
1 CAATA
26490772 TATGTGGCAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.18
Consensus pattern (26 bp):
CAATAACGCAGCAAAGCTACCAGTAA
Found at i:26491020 original size:27 final size:28
Alignment explanation
Indices: 26490949--26491161 Score: 174
Period size: 27 Copynumber: 7.9 Consensus size: 28
26490939 TTCATCTCCT
** * *
26490949 AGGGTATAACGGTCATTTTACCCTAT--
1 AGGGTATTTCGGTAATTTTACCCTTTGG
*
26490975 AGGGTATTTCAG-ACATTTTACCCTTTGG
1 AGGGTATTTCGGTA-ATTTTACCCTTTGG
* ** * *
26491003 A-GGTATTTTGGTCCTTTTA-CCATTCG
1 AGGGTATTTCGGTAATTTTACCCTTTGG
* *
26491029 AGGGTATTTTGGTAATTTTACCGTTT-G
1 AGGGTATTTCGGTAATTTTACCCTTTGG
** * *
26491056 AGGGTATTTCAATCATTTTACCCTTCGG
1 AGGGTATTTCGGTAATTTTACCCTTTGG
* *
26491084 -GGGTATTTCAGTAATTTTA-CCTTTTG
1 AGGGTATTTCGGTAATTTTACCCTTTGG
*
26491110 AAGGTATTTCGGTAATTTTACCCTTT-G
1 AGGGTATTTCGGTAATTTTACCCTTTGG
*
26491137 AGGGTATTTCGATAATTTTACCCTT
1 AGGGTATTTCGGTAATTTTACCCTT
26491162 CGAGCGTATT
Statistics
Matches: 149, Mismatches: 29, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
26 31 0.21
27 108 0.72
28 10 0.07
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (28 bp):
AGGGTATTTCGGTAATTTTACCCTTTGG
Found at i:26491047 original size:54 final size:54
Alignment explanation
Indices: 26490958--26491161 Score: 218
Period size: 54 Copynumber: 3.8 Consensus size: 54
26490948 TAGGGTATAA
*
26490958 CGGTCATTTTACCCTAT--AGGGTATTTCAG-ACATTTTACCCTTTGGAGGTATTT
1 CGGTCATTTTACCCT-TCGAGGGTATTTCGGTA-ATTTTACCCTTTGGAGGTATTT
* * * * *
26491011 TGGTCCTTTTACCATTCGAGGGTATTTTGGTAATTTTACCGTTT-GAGGGTATTT
1 CGGTCATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCTTTGGA-GGTATTT
** * * * *
26491065 CAATCATTTTACCCTTCGGGGGTATTTCAGTAATTTTACCTTTTGAAGGTATTT
1 CGGTCATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCTTTGGAGGTATTT
* * *
26491119 CGGTAATTTTACCCTTTGAGGGTATTTCGATAATTTTACCCTT
1 CGGTCATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCTT
26491162 CGAGCGTATT
Statistics
Matches: 122, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
52 1 0.01
53 14 0.11
54 105 0.86
55 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.44
Consensus pattern (54 bp):
CGGTCATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCCTTTGGAGGTATTT
Found at i:26491089 original size:81 final size:81
Alignment explanation
Indices: 26490958--26491176 Score: 262
Period size: 81 Copynumber: 2.7 Consensus size: 81
26490948 TAGGGTATAA
* * * * ** **
26490958 CGGTCATTTTACCCTAT-AGGGTATTTCAGA-CATTTTACCCTTTGGAGGTATTTTGGTCCTTTT
1 CGGTAATTTTACCCTTTGAGGGTATTTCA-ATCATTTTACCCTTCGGGGGTATTTCAGTAATTTT
*
26491021 ACCATTCGAGGGTATTT
65 ACCATTCGAAGGTATTT
* *
26491038 TGGTAATTTTACCGTTTGAGGGTATTTCAATCATTTTACCCTTCGGGGGTATTTCAGTAATTTTA
1 CGGTAATTTTACCCTTTGAGGGTATTTCAATCATTTTACCCTTCGGGGGTATTTCAGTAATTTTA
* *
26491103 CCTTTTGAAGGTATTT
66 CCATTCGAAGGTATTT
* * * *
26491119 CGGTAATTTTACCCTTTGAGGGTATTTCGATAATTTTACCCTTCGAGCGTATTTCAGT
1 CGGTAATTTTACCCTTTGAGGGTATTTCAATCATTTTACCCTTCGGGGGTATTTCAGT
26491177 CCCATTACGG
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 14 0.12
81 104 0.88
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (81 bp):
CGGTAATTTTACCCTTTGAGGGTATTTCAATCATTTTACCCTTCGGGGGTATTTCAGTAATTTTA
CCATTCGAAGGTATTT
Found at i:26494687 original size:40 final size:40
Alignment explanation
Indices: 26494604--26494946 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
26494594 TTGAATGCTG
* * * * * *
26494604 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * *
26494644 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
26494684 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26494724 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26494764 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26494804 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26494844 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26494884 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26494923 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26494947 TGAACGAGGA
Statistics
Matches: 280, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.12
40 237 0.85
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:26502718 original size:40 final size:40
Alignment explanation
Indices: 26502635--26502977 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
26502625 TTGAATGCTG
* * * * * *
26502635 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * *
26502675 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
26502715 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26502755 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26502795 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26502835 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26502875 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26502915 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26502954 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26502978 TGAACGAGGA
Statistics
Matches: 280, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.12
40 237 0.85
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:26509316 original size:28 final size:28
Alignment explanation
Indices: 26509275--26509368 Score: 127
Period size: 28 Copynumber: 3.4 Consensus size: 28
26509265 TATCCAGTAC
* *
26509275 CAGT-ACAGTATGGGCCTTAGCCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
26509302 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* * *
26509330 TAGTAACAATGTGGGCCTTAGCCCAGTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
26509358 CAGTAATCAGT
1 CAGTAA-CAGT
26509369 ACAATGCAGT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 4 0.07
28 51 0.88
29 3 0.05
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:26509548 original size:26 final size:26
Alignment explanation
Indices: 26509479--26509550 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
26509469 AATACCGCAG
* * * *
26509479 CAAAGCTGCTAGTAATAATAATGCAA
1 CAAAGCTACCAGTAACAGTAATGCAA
*
26509505 CAAAGCTACGAGTAACAGTAATGCAA
1 CAAAGCTACCAGTAACAGTAATGCAA
26509531 CAAAGCTACCAGTAACAGTA
1 CAAAGCTACCAGTAACAGTA
26509551 TATGTGGCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.18
Consensus pattern (26 bp):
CAAAGCTACCAGTAACAGTAATGCAA
Found at i:26509639 original size:32 final size:32
Alignment explanation
Indices: 26509598--26509663 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
26509588 TATCAGAATC
*
26509598 TCATGTCATAAATCACACGTGTATGTAGTATG
1 TCATGTCATAAACCACACGTGTATGTAGTATG
* *
26509630 TCATGTCATAAACCATACGTGTATGTAGTGTG
1 TCATGTCATAAACCACACGTGTATGTAGTATG
26509662 TC
1 TC
26509664 GTACTCAGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35
Consensus pattern (32 bp):
TCATGTCATAAACCACACGTGTATGTAGTATG
Found at i:26509782 original size:26 final size:26
Alignment explanation
Indices: 26509728--26510132 Score: 147
Period size: 27 Copynumber: 15.1 Consensus size: 26
26509718 GGCCATAACA
* * **
26509728 GTCATTTCATCTCCTAGGGGTATAACG
1 GTCATTTTATC-CTTAGGGGTATTTCG
*
26509755 GTTA-TTTATCCTATAGGGGTATTTCG
1 GTCATTTTATCCT-TAGGGGTATTTCG
* *
26509781 GTCATTTTATCCTTCGGGGGTATTTCA
1 GTCATTTTATCCTT-AGGGGTATTTCG
** * * *
26509808 AACATTTTACCCTTTGGGGGTATTTTG
1 GTCATTTTATCC-TTAGGGGTATTTCG
* * *
26509835 GTCATTTTA-CCATTTAGGGATTTTTTG
1 GTCATTTTATCC--TTAGGGGTATTTCG
* * **
26509862 GTAATTTTACCCTATAGGGGTATTTTA
1 GTCATTTTATCCT-TAGGGGTATTTCG
* * *
26509889 GTCATTTTACCCTTCGGGGGTATTTCA
1 GTCATTTTATCCTT-AGGGGTATTTCG
* * *
26509916 GACATTTTACCCTTCAGGGGTATTTTG
1 GTCATTTTATCCTT-AGGGGTATTTCG
* * *
26509943 ATCATTTTA-CCATTCAGGGATATTTTG
1 GTCATTTTATCC-TT-AGGGGTATTTCG
* * *
26509970 GTAATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTATCCTTAG-GGGTATTTCG
* * * **
26509997 ATAATTTTA-CCGTTCGGGGTATTTTA
1 GTCATTTTATCC-TTAGGGGTATTTCG
* * * *
26510023 GTAATTTTACCCTTTAAGGGTATTTTG
1 GTCATTTTATCC-TTAGGGGTATTTCG
* * * *
26510050 GTAATTTTA-CCTTTCGAGAGT-TTTCA
1 GTCATTTTATCC-TTAG-GGGTATTTCG
* * *
26510076 GTAATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTATCCTTAG-GGGTATTTCG
* * * *
26510103 GTAATTTTACCCTTCGTTGGTATTTCG
1 GTCATTTTATCCTTAG-GGGTATTTCG
26510130 GTC
1 GTC
26510133 CCATTAAAGC
Statistics
Matches: 307, Mismatches: 55, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.00
26 70 0.23
27 230 0.75
28 6 0.02
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (26 bp):
GTCATTTTATCCTTAGGGGTATTTCG
Found at i:26509800 original size:27 final size:27
Alignment explanation
Indices: 26509770--26510131 Score: 284
Period size: 27 Copynumber: 13.5 Consensus size: 27
26509760 TTATCCTATA
* *
26509770 GGGGTATTTCGGTCATTTTATCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
** *
26509797 GGGGTATTTC-AAACATTTTACCCTTTG
1 GGGGTATTTCGGTA-ATTTTACCCTTCG
* * * **
26509824 GGGGTATTTTGGTCATTTTACCATTTA
1 GGGGTATTTCGGTAATTTTACCCTTCG
* * * *
26509851 GGGATTTTTTGGTAATTTTACCCTAT-A
1 GGGGTATTTCGGTAATTTTACCCT-TCG
** *
26509878 GGGGTATTTTAGTCATTTTACCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
* *
26509905 GGGGTATTTCAG-ACATTTTACCCTTCA
1 GGGGTATTTCGGTA-ATTTTACCCTTCG
* * * * *
26509932 GGGGTATTTTGATCATTTTACCATTCA
1 GGGGTATTTCGGTAATTTTACCCTTCG
* *
26509959 GGGATATTTTGGTAATTTTACCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
* * *
26509986 AGGGTATTTCGATAATTTTACCGTTC-
1 GGGGTATTTCGGTAATTTTACCCTTCG
** **
26510012 GGGGTATTTTAGTAATTTTACCCTTTA
1 GGGGTATTTCGGTAATTTTACCCTTCG
* * *
26510039 AGGGTATTTTGGTAATTTTACCTTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
* * *
26510066 AGAGT-TTTCAGTAATTTTACCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
*
26510092 AGGGTATTTCGGTAATTTTACCCTTCG
1 GGGGTATTTCGGTAATTTTACCCTTCG
**
26510119 TTGGTATTTCGGT
1 GGGGTATTTCGGT
26510132 CCCATTAAAG
Statistics
Matches: 270, Mismatches: 57, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
26 43 0.16
27 226 0.84
28 1 0.00
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.44
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACCCTTCG
Found at i:26509953 original size:108 final size:108
Alignment explanation
Indices: 26509771--26510128 Score: 445
Period size: 108 Copynumber: 3.3 Consensus size: 108
26509761 TATCCTATAG
* * * *
26509771 GGGTATTTCGGTCATTTTATCCTTCGGGGGTATTTCAAACATTTTACCCTTTGGGGGTATTTTGG
1 GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAGACATTTTACCCTTTAGGGGTATTTTGG
26509836 TCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCTATAG-
66 TCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCT-TAGA
** * * *
26509879 GGGTATTTTAGTCATTTTACCCTTCGGGGGTATTTCAGACATTTTACCCTTCAGGGGTATTTTGA
1 GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAGACATTTTACCCTTTAGGGGTATTTTGG
* * *
26509944 TCATTTTACCATTCAGGGATATTTTGGTAATTTTACCCTTCGA
66 TCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCTTAGA
* * * *
26509987 GGGTATTTCGATAATTTTACCGTTC-GGGGTATTTTAGTA-ATTTTACCCTTTAAGGGTATTTTG
1 GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAG-ACATTTTACCCTTTAGGGGTATTTTG
* * * * ** *
26510050 GTAATTTTACC-TTTCGAGAGTTTTCAGTAATTTTACCCTTCGA
65 GTCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCTTAGA
**
26510093 GGGTATTTCGGTAATTTTACCCTTCGTTGGTATTTC
1 GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTC
26510129 GGTCCCATTA
Statistics
Matches: 215, Mismatches: 32, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
106 48 0.22
107 51 0.24
108 116 0.54
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.45
Consensus pattern (108 bp):
GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAGACATTTTACCCTTTAGGGGTATTTTGG
TCATTTTACCATTTAGGGATTTTTTGGTAATTTTACCCTTAGA
Found at i:26510820 original size:35 final size:35
Alignment explanation
Indices: 26510781--26510849 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
26510771 AAAAAGATTA
*
26510781 TTCGGCCA-AAGAAGAAAA-AAAGAAGAGAAGAAAGG
1 TTCGGCCAGAAGAA-AAAAGAAA-AAGAAAAGAAAGG
26510816 TTCGGCCAGAAGAAAAAAGAAAAAGAAAAGAAAG
1 TTCGGCCAGAAGAAAAAAGAAAAAGAAAAGAAAG
26510850 TAAAATGAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 23 0.74
36 8 0.26
ACGTcount: A:0.59, C:0.09, G:0.26, T:0.06
Consensus pattern (35 bp):
TTCGGCCAGAAGAAAAAAGAAAAAGAAAAGAAAGG
Found at i:26511698 original size:365 final size:366
Alignment explanation
Indices: 26510987--26511706 Score: 1102
Period size: 365 Copynumber: 2.0 Consensus size: 366
26510977 TCGAAACTCC
* *
26510987 CCGAAATCAAAGCAAGCAGAAAGAAAACTCCCAAAAAAAAACCAAAATCGAAAACCTTTAGTGCT
1 CCGAAATCAAAGCAAACAGAAAGAAAAC-CCC-AAAAAAAACCAAAACCGAAAACCTTTAGTGCT
* * * *
26511052 AAGTGACTAAATTCAGCACAAACACCCTCCCCCAATAGAATTCTCACTGTTGGAATACCCCAAAT
64 AAGTGACTAAATTCAGCACAAACACCCTCACCCAACAGAATTCTCACTGTTCGAATACCCCAAAC
* * * *
26511117 GACACACACTCCCCCTCTCATCAAACTGCTTAATTTCCTTCACAAATCTCTCCCCTTATCCCTCC
129 GACACACACTCCCCCTCTCATCAAACTCCTTAATTTCCTCCACAAATCTCTCCCCTTATCACTCA
* *
26511182 TTGATTTATTCCATCAAATCCTCCTCAACTCCCTCTATGACCAGTTCAAACTCCATTAAGCAGTA
194 TTGATTTACTCCATAAAATCCTCCTCAACTCCCTCTATGACCAGTTCAAACTCCATTAAGCAGTA
*
26511247 TTCCAGTCCAACTCCACCACCTCACTGTACAGGTGGTAAAAATAAACACTCCTCAGTGTAGCACA
259 TTCCAGTCCAACTCCACCACCTCACTGTACAGGTGGTAAAAATAAACACTCCTCAGTGCAGCACA
* *
26511312 TGACTCGAACCTTAAACCTTAAGAGAACTTCACACGCGACTTG
324 AGACTCGAACCTCAAACCTTAAGAGAACTTCACACGCGACTTG
* *
26511355 CCGAAATCAAAGCAAACTGAGAGAAAA-CCC-AAAAAAACCAAAACCGAAAACCTTTAGTGCTAA
1 CCGAAATCAAAGCAAACAGAAAGAAAACCCCAAAAAAAACCAAAACCGAAAACCTTTAGTGCTAA
** *
26511418 GTGACTAAATTCTTCACAAACACCCTCACCCAACCGAATTCTCACTGTTCGAATACCCCAAACGA
66 GTGACTAAATTCAGCACAAACACCCTCACCCAACAGAATTCTCACTGTTCGAATACCCCAAACGA
** * *
26511483 CACGTACTCCCCCCTCTCATCAAATTCCTTAATTTCCTCCACAAATCTCTCCCTTTATCACTCAT
131 CACACACT-CCCCCTCTCATCAAACTCCTTAATTTCCTCCACAAATCTCTCCCCTTATCACTCAT
* * * *
26511548 TGATTTACTCCATAAAATCTTTCTCAACTCCTTCTATGACCAGTTCAAACTCTATTAAGCAGTAT
195 TGATTTACTCCATAAAATCCTCCTCAACTCCCTCTATGACCAGTTCAAACTCCATTAAGCAGTAT
* * * *
26511613 TCCAGTCCAACTCTACCACCTCACTGTATAGGTGGTAAAAATAAGCACTCCTCAGTGCAGCATAA
260 TCCAGTCCAACTCCACCACCTCACTGTACAGGTGGTAAAAATAAACACTCCTCAGTGCAGCACAA
*
26511678 GACTCGAACCTCAGACCTTAAGAGAACTT
325 GACTCGAACCTCAAACCTTAAGAGAACTT
26511707 TACGCACCAC
Statistics
Matches: 318, Mismatches: 33, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
364 96 0.30
365 195 0.61
366 3 0.01
368 24 0.08
ACGTcount: A:0.34, C:0.31, G:0.10, T:0.24
Consensus pattern (366 bp):
CCGAAATCAAAGCAAACAGAAAGAAAACCCCAAAAAAAACCAAAACCGAAAACCTTTAGTGCTAA
GTGACTAAATTCAGCACAAACACCCTCACCCAACAGAATTCTCACTGTTCGAATACCCCAAACGA
CACACACTCCCCCTCTCATCAAACTCCTTAATTTCCTCCACAAATCTCTCCCCTTATCACTCATT
GATTTACTCCATAAAATCCTCCTCAACTCCCTCTATGACCAGTTCAAACTCCATTAAGCAGTATT
CCAGTCCAACTCCACCACCTCACTGTACAGGTGGTAAAAATAAACACTCCTCAGTGCAGCACAAG
ACTCGAACCTCAAACCTTAAGAGAACTTCACACGCGACTTG
Found at i:26513937 original size:21 final size:23
Alignment explanation
Indices: 26513894--26513939 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
26513884 GCTGTCAAAA
**
26513894 TTAAATAGATGATATAATGCTCC
1 TTAAATAGATGATATAAACCTCC
26513917 TTAAAT-GATG-TATAAACCTCC
1 TTAAATAGATGATATAAACCTCC
26513938 TT
1 TT
26513940 TGTAACAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.52
22 4 0.19
23 6 0.29
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (23 bp):
TTAAATAGATGATATAAACCTCC
Found at i:26514495 original size:50 final size:52
Alignment explanation
Indices: 26514369--26514500 Score: 144
Period size: 50 Copynumber: 2.6 Consensus size: 52
26514359 AAACTAAATG
* * *
26514369 AGTTACTTAATGCA-AAGGCTTAATTTAATGATGCAGACTTAAACTAACATGGG
1 AGTTACATAATGCATAA--CTTTATTTAATGATGCAGACTTAAACTAACATGGA
** * * *
26514422 AGTTACATAATGCATGTCATTATTT-ATGATGCATACTT-AACTAGCATGGA
1 AGTTACATAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATGGA
*
26514472 AGTTACATAATGCATAACTTTATTAAATG
1 AGTTACATAATGCATAACTTTATTTAATG
26514501 CAAAACACAC
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
50 31 0.48
51 15 0.23
52 6 0.09
53 13 0.20
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (52 bp):
AGTTACATAATGCATAACTTTATTTAATGATGCAGACTTAAACTAACATGGA
Found at i:26520209 original size:40 final size:40
Alignment explanation
Indices: 26520143--26520262 Score: 107
Period size: 40 Copynumber: 3.0 Consensus size: 40
26520133 ACACTCCAAT
* * * *
26520143 TTGTGGACAAACCACTAATAACGCAGACAAGCTTCCAGT-
1 TTGTGGACAAGCCACCAATAATGCAGACAAGCTGCCAGTA
* * * *
26520182 TATGTGGACAAGCCACCAGTAATGCAGATATGCTGCTAGTA
1 T-TGTGGACAAGCCACCAATAATGCAGACAAGCTGCCAGTA
* * * * *
26520223 TTGTGCACAAGCCACCAATAATACAAATAAGCTGTCAGTA
1 TTGTGGACAAGCCACCAATAATGCAGACAAGCTGCCAGTA
26520263 GTGTAAACAA
Statistics
Matches: 64, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
39 1 0.02
40 62 0.97
41 1 0.02
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.23
Consensus pattern (40 bp):
TTGTGGACAAGCCACCAATAATGCAGACAAGCTGCCAGTA
Found at i:26520273 original size:40 final size:40
Alignment explanation
Indices: 26520189--26520273 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 40
26520179 AGTTATGTGG
* * * * * **
26520189 ACAAGCCACCAGTAATGCAGATATGCTGCTAGTATTGTGC
1 ACAAGCCACCAATAATACAAATAAGCTGCTAGTAGTGTAA
26520229 ACAAGCCACCAATAATACAAATAAGCTG-TCAGTAGTGTAA
1 ACAAGCCACCAATAATACAAATAAGCTGCT-AGTAGTGTAA
26520269 ACAAG
1 ACAAG
26520274 TGCCAGTAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (40 bp):
ACAAGCCACCAATAATACAAATAAGCTGCTAGTAGTGTAA
Found at i:26526018 original size:6 final size:7
Alignment explanation
Indices: 26525999--26526041 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
26525989 AAAAAAAAGG
26525999 TGAAAAA
1 TGAAAAA
26526006 TGAAAAA
1 TGAAAAA
26526013 TGAAAAA
1 TGAAAAA
26526020 TG-AAAA
1 TGAAAAA
26526026 TGAAAAA
1 TGAAAAA
26526033 -GTAAAAA
1 TG-AAAAA
26526040 TG
1 TG
26526042 GAGAGGCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 7 0.21
7 25 0.76
8 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:26526025 original size:20 final size:20
Alignment explanation
Indices: 26526002--26526041 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26525992 AAAAAGGTGA
26526002 AAAATGAAAAA-TGAAAAATG
1 AAAATGAAAAAGT-AAAAATG
26526022 AAAATGAAAAAGTAAAAATG
1 AAAATGAAAAAGTAAAAATG
26526042 GAGAGGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAATGAAAAAGTAAAAATG
Found at i:26527688 original size:140 final size:138
Alignment explanation
Indices: 26527416--26527748 Score: 558
Period size: 140 Copynumber: 2.4 Consensus size: 138
26527406 TGAGATGGTG
* * * *
26527416 AATCTTATCCCCTAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTGCTTAGATTACAG
1 AATCTTATCTCCTAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCTGAGATTACAG
* * *
26527481 TGGAGCGGATTAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCTCATCAGATTG
66 TGCAGCGGATTAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGATTG
26527546 AAGCCAAA
131 AAGCCAAA
*
26527554 AATCTTATCTCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCTGAGATTACA
1 AATCTTATCTCCT-AGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCTGAGATTACA
26527619 GTGCAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGAT
65 GTGCAGCGGATT-AAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGAT
*
26527684 TGAAGCCAGA
129 TGAAGCCAAA
26527694 AATCTTATCTCCCTAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
1 AATCTTATCT-CCTAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCC
26527749 CAAGCGGTGC
Statistics
Matches: 182, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
138 12 0.07
139 58 0.32
140 109 0.60
141 3 0.02
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (138 bp):
AATCTTATCTCCTAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCTGAGATTACAG
TGCAGCGGATTAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGATTG
AAGCCAAA
Found at i:26527840 original size:50 final size:50
Alignment explanation
Indices: 26527767--26528124 Score: 247
Period size: 50 Copynumber: 7.2 Consensus size: 50
26527757 GCAGTAGAGC
* * *
26527767 AGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * *
26527817 AGATTAAAGCTACAACAGCGAATCTTAC-TCCCCAGGCGA-TGCAGTGAAAC
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCC-GAC-ATTGCAGTTAAAA
* * *
26527867 AGATTAAAGCCACATCAGTGAATCTTGCTTTCCCGACATTGCAGCTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * * ** *
26527917 GGATTAAAGCTACAATAGCGAATCTTACTTCCCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * ** *
26527967 AGATTAAAGCCACAA-GGTGAATCTTG-TCTCTCTAACATTGTAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTGCT-TCCCCGACATTGCAGTTAAAA
* * * * * * * * ** **
26528016 AGATTAAAGCCACAGCTGTGAGTGTTACTTCCCTGGCAATGCAGCGAAGC
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * *
26528066 AGATTAAAGCCACAACGGTAAATCTTGCTTTCTCGACATTCCAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
*
26528116 GGATTAAAG
1 AGATTAAAG
26528125 TGACCACGAC
Statistics
Matches: 225, Mismatches: 76, Indels: 14
0.71 0.24 0.04
Matches are distributed among these distances:
48 1 0.00
49 40 0.18
50 178 0.79
51 6 0.03
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (50 bp):
AGATTAAAGCCACAACAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:26528123 original size:199 final size:200
Alignment explanation
Indices: 26527744--26528306 Score: 533
Period size: 199 Copynumber: 2.8 Consensus size: 200
26527734 AGTAATCCTA
* * * * *
26527744 TCTCCCAAGCGGTGCAGTAGAGCAGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGC
1 TCTCCCAGGCAGTGCAGTAGAGCAGATTAAAGCCACA-AGGTGAATCTTGCTTCCCCAACATTGC
* * *
26527809 AGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTCCCCAGGCGATGCAGTGAAACAGATTAA
65 AGTTAAAAAGATTAAAGCCACAACAGCGAATCTTACTCCCCAGGCAATGCAGCGAAACAGATTAA
* * *
26527874 AGCCACATCAGTGAATCTTGCTTTCCCGACATTGCAGCTAAAAGGATTAAAGCT-ACAATAG-CG
130 AGCCACAACAGTAAATCTTGCTTTCCCGACATTCCAGCTAAAAGGATTAAAG-TGACAA-AGACG
*
26527937 AATCTTAC
193 AATCTCAC
* * * * *
26527945 T-TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAAGGTGAATCTTG-TCTCTCTAACATTGT
1 TCTCCCAGGCAGTGCAGTAGAGCAGATTAAAGCCACAAGGTGAATCTTGCT-TCCCCAACATTGC
* * * * * * * *
26528008 AGTTAAAAAGATTAAAGCCACAGCTGTGAGTGTTACTTCCCTGGCAATGCAGCGAAGCAGATTAA
65 AGTTAAAAAGATTAAAGCCACAACAGCGAATCTTACTCCCCAGGCAATGCAGCGAAACAGATTAA
* * * * *
26528073 AGCCACAACGGTAAATCTTGCTTTCTCGACATTCCAGTTAAAAGGATTAAAGTGACCACGACGAA
130 AGCCACAACAGTAAATCTTGCTTTCCCGACATTCCAGCTAAAAGGATTAAAGTGACAAAGACGAA
26528138 TCTCAC
195 TCTCAC
* * * * ** **
26528144 TCTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCATAATAGTGAATCTTGCTTTTCTGACATTGC
1 TCTCCCAGGCAGTGCAGTAGAGCAGATTAAAGCCACAA-GGTGAATCTTGCTTCCCCAACATTGC
* ** * * * * ** * *
26528209 AGCTAAAGGGATTAAAGTCACAA-TGACCAATCTTACTTTCCCAGGCGGTGCAGTGGAACAGATT
65 AGTTAAAAAGATTAAAGCCACAACAG-CGAATCTTAC-TCCCCAGGCAATGCAGCGAAACAGATT
* * * ** *
26528273 GAAGCTACAACAGCAAATCTCACTTCCCCGACAT
128 AAAGCCACAACAGTAAATCTTGCTTTCCCGACAT
26528307 CTCAGTTAAG
Statistics
Matches: 292, Mismatches: 62, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
198 3 0.01
199 133 0.46
200 63 0.22
201 45 0.15
202 48 0.16
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (200 bp):
TCTCCCAGGCAGTGCAGTAGAGCAGATTAAAGCCACAAGGTGAATCTTGCTTCCCCAACATTGCA
GTTAAAAAGATTAAAGCCACAACAGCGAATCTTACTCCCCAGGCAATGCAGCGAAACAGATTAAA
GCCACAACAGTAAATCTTGCTTTCCCGACATTCCAGCTAAAAGGATTAAAGTGACAAAGACGAAT
CTCAC
Found at i:26528292 original size:101 final size:100
Alignment explanation
Indices: 26527746--26528285 Score: 452
Period size: 100 Copynumber: 5.4 Consensus size: 100
26527736 TAATCCTATC
* * * * * * * ** *
26527746 TCCCAAGCGGTGCAGTAGAGCAGATTAAAGCGACATCGGTGAATCTTGCTTCCCCGACATTGCAG
1 TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTTTCTGACATTGCAG
* * *
26527811 TTAAAAAGATTAAAG-CTACAA-CAGCGAATCTTACT
66 CTAAAAGGATTAAAGTC-ACAATGA-CGAATCTTACT
* * * * *
26527846 CCCCAGGC-GATGCAGTGAAACAGATTAAAGCCACATCAGTGAATCTTGCTTTCCCGACATTGCA
1 TCCCAGGCAG-TGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTTTCTGACATTGCA
26527910 GCTAAAAGGATTAAAG-CTACAAT-AGCGAATCTTACT
65 GCTAAAAGGATTAAAGTC-ACAATGA-CGAATCTTACT
* * * *
26527946 TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAA-GGTGAATCTTG-TCTCTCTAACATTGTA
1 TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCT-TTTCTGACATTGCA
* * * * * * *
26528009 GTTAAAAAGATTAAAGCCACAGCTG-TGAGTGTTACT
65 GCTAAAAGGATTAAAGTCACA-ATGACGAATCTTACT
* * * * * *
26528045 TCCCTGGCAATGCAG-CGAAGCAGATTAAAGCCACAACGGTAAATCTTGC-TTTCTCGACATTCC
1 TCCCAGGCAGTGCAGTGGAA-CAGATTAAAGCCACAACAGTGAATCTTGCTTTTCT-GACATTGC
* * * * *
26528108 AGTTAAAAGGATTAAAGTGACCACGACGAATCTCACT
64 AGCTAAAAGGATTAAAGTCACAATGACGAATCTTACT
* * * * * *
26528145 CTCTCAGCCAGTGCAGTAGAGCAGATTAAAGCCATAATAGTGAATCTTGCTTTTCTGACATTGCA
1 -TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTTTCTGACATTGCA
* *
26528210 GCTAAAGGGATTAAAGTCACAATGACCAATCTTACTT
65 GCTAAAAGGATTAAAGTCACAATGACGAATCTTAC-T
* * *
26528247 TCCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAG
1 TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAG
26528286 CAAATCTCAC
Statistics
Matches: 354, Mismatches: 70, Indels: 31
0.78 0.15 0.07
Matches are distributed among these distances:
98 4 0.01
99 79 0.22
100 160 0.45
101 103 0.29
102 8 0.02
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (100 bp):
TCCCAGGCAGTGCAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTTTCTGACATTGCAG
CTAAAAGGATTAAAGTCACAATGACGAATCTTACT
Found at i:26528900 original size:14 final size:14
Alignment explanation
Indices: 26528881--26528911 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26528871 ACAAACAAAC
26528881 AAAAAAGCACAGAA
1 AAAAAAGCACAGAA
*
26528895 AAAAAAGCAGAGAA
1 AAAAAAGCACAGAA
26528909 AAA
1 AAA
26528912 GAAAAAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.74, C:0.10, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAAGCACAGAA
Found at i:26537689 original size:23 final size:22
Alignment explanation
Indices: 26537646--26537689 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
26537636 TTCTAAGTCG
26537646 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
26537669 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
26537690 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:26537798 original size:45 final size:45
Alignment explanation
Indices: 26537734--26537827 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
26537724 AACAGATACT
* * *
26537734 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
*
26537779 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
26537824 CGGT
1 CGGT
26537828 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATAATGTC
Found at i:26537890 original size:50 final size:50
Alignment explanation
Indices: 26537833--26538014 Score: 206
Period size: 50 Copynumber: 3.6 Consensus size: 50
26537823 TCGGTTCACA
*
26537833 TAGTAGCCTGCACATAGTGCTACACATGTGACCCTACCATCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCCTACCATCTGATACACG
*** * * * *
26537883 TAGTAGCCTGCACATAGTACTACACATGTGATCGAAACTATC-GGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCCTACCATCTGATACACG
* * * *
26537933 TAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTTCAGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCCTACCATCTGA-TACACG
* *
26537983 TAGTAACCTGCACATAGTACTACACACGTGAC
1 TAGTAGCCTGCACATAGTACTACACATGTGAC
26538015 ATCACTTTCA
Statistics
Matches: 106, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
48 3 0.03
50 97 0.92
51 6 0.06
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCCTACCATCTGATACACG
Found at i:26537996 original size:100 final size:100
Alignment explanation
Indices: 26537831--26538013 Score: 287
Period size: 100 Copynumber: 1.8 Consensus size: 100
26537821 GTTCGGTTCA
* * * *
26537831 CATAGTAGCCTGCACATAGTGCTACACATGTGACCCTACCATCTGATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTCATACACGTAGTAACCTGCAC
*
26537896 ATAGTACTACACATGTGATCGAAACTATCGGTACG
66 ATAGTACTACACACGTGATCGAAACTATCGGTACG
* *
26537931 CATAGTAGCCTGCACATAGTACTACACATGCGA-CCTATCATTTCAGTACACGTAGTAACCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTCA-TACACGTAGTAACCTGCA
26537995 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
26538014 CATCACTTTC
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
99 9 0.12
100 66 0.88
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (100 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCCTACCATCTCATACACGTAGTAACCTGCAC
ATAGTACTACACACGTGATCGAAACTATCGGTACG
Found at i:26541162 original size:43 final size:41
Alignment explanation
Indices: 26541054--26541213 Score: 166
Period size: 41 Copynumber: 3.9 Consensus size: 41
26541044 CGGGATTCAT
* * * *
26541054 TGAATGTAAAGGGTTGCTAAGTGCAGATTCC-CCGAATCAC
1 TGAATATAAGGGGTTGCTAAGTGCTGATTCCACCGTATCAC
*
26541094 TG-ATCAAAGAGGGGTTGCTAAGTGCTGATTCCACCGTATC-C
1 TGAAT-ATA-AGGGGTTGCTAAGTGCTGATTCCACCGTATCAC
* * *
26541135 TTGATTGTGGAAGGGGTTGCTATGTGCTGATTCC-CCGTATCAC
1 -TGAATAT--AAGGGGTTGCTAAGTGCTGATTCCACCGTATCAC
26541178 TGAATATAAGGTGGTTGCTAAGTGCTGATTCCACCG
1 TGAATATAAGG-GGTTGCTAAGTGCTGATTCCACCG
26541214 AGTAACGGTT
Statistics
Matches: 98, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
39 2 0.02
40 7 0.07
41 41 0.42
42 23 0.23
43 24 0.24
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (41 bp):
TGAATATAAGGGGTTGCTAAGTGCTGATTCCACCGTATCAC
Found at i:26545205 original size:20 final size:19
Alignment explanation
Indices: 26545160--26545218 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 19
26545150 TCAAGTTCAT
26545160 TCAGCTCAATTTTAGCTC-A
1 TCAGCTC-ATTTTAGCTCAA
*
26545179 CCGAGCTCACTTTTAGCTCAA
1 TC-AGCTCA-TTTTAGCTCAA
26545200 TCAGCTCATTTTAAGCTCA
1 TCAGCTCATTTT-AGCTCA
26545219 TTTGCATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
19 6 0.18
20 26 0.76
21 2 0.06
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (19 bp):
TCAGCTCATTTTAGCTCAA
Found at i:26547784 original size:29 final size:30
Alignment explanation
Indices: 26547743--26547804 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
26547733 ATTTATGAGC
26547743 TTTAGGGAAAAAG-TGTAAATATGCAAAAG
1 TTTAGGGAAAAAGTTGTAAATATGCAAAAG
** * * *
26547772 TTTAGGGGCAAAGTTGTAATTTTGCCAAAG
1 TTTAGGGAAAAAGTTGTAAATATGCAAAAG
26547802 TTT
1 TTT
26547805 GAGTCAAGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.32
Consensus pattern (30 bp):
TTTAGGGAAAAAGTTGTAAATATGCAAAAG
Found at i:26548022 original size:18 final size:17
Alignment explanation
Indices: 26547989--26548027 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
26547979 TTTTATAATT
26547989 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
26548007 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
26548024 TGTG
1 TGTG
26548028 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:26548279 original size:23 final size:23
Alignment explanation
Indices: 26548253--26548372 Score: 154
Period size: 23 Copynumber: 5.3 Consensus size: 23
26548243 GTGTTATTGA
26548253 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
* *
26548276 TCAGTGGTAGCTACAGCTACATAT
1 TCAGTGGTAGCTTCGGCTACAT-T
26548300 T-AGTGGTAGCTTCGGCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
* * *
26548321 TCAGTGATAGCTACGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
* *
26548344 TCAGTGGTAGCTTTGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
26548367 TCAGTG
1 TCAGTG
26548373 TGACACTTAT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
21 2 0.02
22 17 0.20
23 63 0.75
24 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:26548340 original size:45 final size:45
Alignment explanation
Indices: 26548252--26548372 Score: 188
Period size: 45 Copynumber: 2.6 Consensus size: 45
26548242 AGTGTTATTG
*
26548252 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACA-TTCAGTGATAGCTACAGCTACAT
* *
26548298 ATTAGTGGTAGCTTCGGCTACATTCAGTGATAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTCAGTGATAGCTACAGCTACAT
*
26548343 ATCAGTGGTAGCTTTGGCTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACAT-TCAGTG
26548373 TGACACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
45 42 0.61
46 27 0.39
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (45 bp):
ATCAGTGGTAGCTTCGGCTACATTCAGTGATAGCTACAGCTACAT
Found at i:26555728 original size:20 final size:20
Alignment explanation
Indices: 26555693--26555741 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
26555683 ACCATGGTAT
*
26555693 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
26555712 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
26555732 TTGCTTACTT
1 TTGCTTACTT
26555742 AAATTGTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:26557125 original size:27 final size:27
Alignment explanation
Indices: 26557095--26557272 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
26557085 ATATCGAGTC
* *
26557095 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
26557122 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26557149 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
26557177 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26557204 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
26557231 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
26557258 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26557273 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26557234 original size:82 final size:81
Alignment explanation
Indices: 26557116--26557271 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
26557106 TGCTATATAA
* *
26557116 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
26557181 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26557198 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
26557262 CACTTAGTGC
65 CACTTAGTGC
26557272 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26565282 original size:40 final size:41
Alignment explanation
Indices: 26565147--26565332 Score: 261
Period size: 41 Copynumber: 4.6 Consensus size: 41
26565137 TACTCGAATG
*
26565147 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
*
26565188 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
26565229 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
26565269 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
26565309 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
26565333 CTTGTGTGAG
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.47
41 69 0.52
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:26565289 original size:81 final size:82
Alignment explanation
Indices: 26565149--26565302 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 82
26565139 CTCGAATGAT
* * *
26565149 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
26565214 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
26565231 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
26565294 TTTATGCTA
65 TTTATGCTA
26565303 GTGACCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 39 0.58
82 27 0.40
83 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:26574190 original size:21 final size:22
Alignment explanation
Indices: 26574164--26574210 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
26574154 GATTTATTAA
26574164 TTTAAG-TTTTAAAAT-CAATAG
1 TTTAAGATTTTAAAATCCAA-AG
*
26574185 TTTAAGATTTTGAAATCCAAAG
1 TTTAAGATTTTAAAATCCAAAG
26574207 TTTA
1 TTTA
26574211 TACATGCATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 6 0.26
22 14 0.61
23 3 0.13
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (22 bp):
TTTAAGATTTTAAAATCCAAAG
Found at i:26574731 original size:152 final size:152
Alignment explanation
Indices: 26574455--26575057 Score: 1019
Period size: 152 Copynumber: 4.0 Consensus size: 152
26574445 ACCATAAGAA
* *
26574455 TAGTTTAAATATAACAAAAACATTATTAAGCACATAATAATCAAACATGCAATCTTTATTTGCAT
1 TAGTTTAAATATAACAAAAATATTATTAAGCACATAATAATCAAACATGCAATCTTTATGTGCAT
*
26574520 GATTATGATAATGCAAATATTTTTATAAAACATAGATGCAAGGTTTCTAAAATTTTCTACTCATT
66 GATTATGATAATGCAAATATTTTTATAAAACATAGATGCAAGGTTTCTAAAATTTTCTACCCATT
26574585 TCCGCTACACACCAAAACAAAT
131 TCCGCTACACACCAAAACAAAT
26574607 TAGTTTAAATATAACAAAAATATTATTAAGCACATAATAATCAAACATGCAATCTTTATGTGCAT
1 TAGTTTAAATATAACAAAAATATTATTAAGCACATAATAATCAAACATGCAATCTTTATGTGCAT
* *
26574672 GATTATGATAATGCAAATATTATTATAAAACATAGATGCAAGGTTTCTAAAATTTTCTACTCATT
66 GATTATGATAATGCAAATATTTTTATAAAACATAGATGCAAGGTTTCTAAAATTTTCTACCCATT
26574737 TCCGCTACACACCAAAACAAAT
131 TCCGCTACACACCAAAACAAAT
26574759 TAGTTTAAATATAACAAAAATATTATTAAGCACATAATAATCAAACATGCAATCTTTATGTGCAT
1 TAGTTTAAATATAACAAAAATATTATTAAGCACATAATAATCAAACATGCAATCTTTATGTGCAT
* *
26574824 GATTATGATAATGCAAATATTTTTATAAAACATATATGCAAGTTTTCTAAAATTTTCTACCCATT
66 GATTATGATAATGCAAATATTTTTATAAAACATAGATGCAAGGTTTCTAAAATTTTCTACCCATT
* *
26574889 TCTGCTACACACCAAAAGAAAT
131 TCCGCTACACACCAAAACAAAT
*
26574911 CAGTTTAAATATAACAAAAATATTATTAAGCACATAATAATCAAACATGCAATCTTTATGTGCAT
1 TAGTTTAAATATAACAAAAATATTATTAAGCACATAATAATCAAACATGCAATCTTTATGTGCAT
* * * ** * *
26574976 GACTATGATAATGCAAATATTTTTATAGAATATATTTGAAAGTTTTCTAAAA-TTTCTGACCCAT
66 GATTATGATAATGCAAATATTTTTATAAAACATAGATGCAAGGTTTCTAAAATTTTCT-ACCCAT
**
26575040 TTCTACTACACACCAAAA
130 TTCCGCTACACACCAAAA
26575058 GGAATTCCCC
Statistics
Matches: 434, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
151 5 0.01
152 429 0.99
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (152 bp):
TAGTTTAAATATAACAAAAATATTATTAAGCACATAATAATCAAACATGCAATCTTTATGTGCAT
GATTATGATAATGCAAATATTTTTATAAAACATAGATGCAAGGTTTCTAAAATTTTCTACCCATT
TCCGCTACACACCAAAACAAAT
Found at i:26578022 original size:39 final size:38
Alignment explanation
Indices: 26577968--26578138 Score: 125
Period size: 40 Copynumber: 4.3 Consensus size: 38
26577958 GAATCACGTA
* * **
26577968 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATG
* *
26578007 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATG
*
26578047 CCTTCGGG-CTTAGCCTGGA-ATTAGTATCTCGCACAAATG
1 CCTTCGGGACTTAACC-GGATA-TAGTA-CTCGCACAAATG
* * *
26578086 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATG
*
26578126 CCTTTGGGACTTA
1 CCTTCGGGACTTA
26578139 GCCCGGACAT
Statistics
Matches: 107, Mismatches: 13, Indels: 23
0.75 0.09 0.16
Matches are distributed among these distances:
38 5 0.05
39 40 0.37
40 47 0.44
41 15 0.14
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.29
Consensus pattern (38 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATG
Found at i:26578038 original size:40 final size:40
Alignment explanation
Indices: 26578001--26578145 Score: 134
Period size: 40 Copynumber: 3.6 Consensus size: 40
26577991 GCTACTCGTT
26578001 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
26578041 CCAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
26578080 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
26578121 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26578146 CATCATTCGA
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.36
40 41 0.48
41 11 0.13
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26586190 original size:40 final size:40
Alignment explanation
Indices: 26586146--26586239 Score: 145
Period size: 40 Copynumber: 2.4 Consensus size: 40
26586136 GCTACTTGTT
*
26586146 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
26586186 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
26586226 CCAATGCCTTCGGG
1 CAAATGCCTTCGGG
26586240 CTTTGTGACA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 48 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:26588981 original size:22 final size:22
Alignment explanation
Indices: 26588954--26589076 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
26588944 ATGTGCATAT
26588954 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
26588976 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
26589000 TATGTGATAAGGCCAAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
26589023 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
26589045 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
26589070 ATGTGAT
1 ATGTGAT
26589077 GAATATGAAC
Statistics
Matches: 73, Mismatches: 12, Indels: 32
0.62 0.10 0.27
Matches are distributed among these distances:
22 24 0.33
23 17 0.23
24 16 0.22
25 16 0.22
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:26588991 original size:47 final size:47
Alignment explanation
Indices: 26588938--26589122 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
26588928 GATAATTGTG
**
26588938 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
26588985 ATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
26589032 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
26589079 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
26589123 AATATATGTA
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:26589381 original size:39 final size:38
Alignment explanation
Indices: 26589327--26589478 Score: 247
Period size: 37 Copynumber: 4.1 Consensus size: 38
26589317 GGAAATATAT
26589327 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAATTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-ATTG
*
26589366 TCCGGGTAAGACCCGATGACTACGTGTGAAGATTA-TG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATTG
26589403 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-TTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATTG
* *
26589440 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT-TTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATTG
26589477 TC
1 TC
26589479 TGAGCTAAAG
Statistics
Matches: 108, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
37 74 0.69
38 1 0.01
39 33 0.31
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (38 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATTG
Found at i:26597579 original size:27 final size:26
Alignment explanation
Indices: 26597544--26597655 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
26597534 AACATGGCTT
* * *
26597544 CCAGAACAGAGAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
26597570 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
26597598 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
26597625 CCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAA-CAGATAA-TGTGGCAGAGCCA
26597652 CCAG
1 CCAG
26597656 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
26 8 0.11
27 51 0.67
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:26597635 original size:54 final size:54
Alignment explanation
Indices: 26597544--26597655 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
26597534 AACATGGCTT
* *
26597544 CCAGAACAGAGAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAGAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
* * * *
26597598 CCAGAACAGATATATGTGGCAGAGCCACCAAAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAGA-ATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
26597652 CCAG
1 CCAG
26597656 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAGAATGTGACAGAGCCACCAAATACAGATAATCGTGGCAGAGCCA
Found at i:26611074 original size:28 final size:28
Alignment explanation
Indices: 26611027--26611091 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
26611017 AAATTAACCC
* * *
26611027 TAGGGATATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTCCACACA
* *
26611055 TAGGGGTATAATGGTAATTTTCCATACA
1 TAGGGGTATAAAGGTAATTTTCCACACA
26611083 TAGGGGTAT
1 TAGGGGTAT
26611092 TCTAGTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTCCACACA
Found at i:26617344 original size:6 final size:6
Alignment explanation
Indices: 26617333--26617358 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26617323 ATGACCGGAT
26617333 CTTGGG CTTGGG CTTGGG CTTGGG CT
1 CTTGGG CTTGGG CTTGGG CTTGGG CT
26617359 CTGATATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.46, T:0.35
Consensus pattern (6 bp):
CTTGGG
Found at i:26618359 original size:55 final size:56
Alignment explanation
Indices: 26618294--26618408 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
26618284 AGCATGGCTG
* * * *
26618294 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCA-AAACAGATAATTTGTGGCA-TAGCCA
* * *
26618350 CCAGA-ACAGATATACGTGGCAGGGCCACCAAAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
26618405 CCAG
1 CCAG
26618409 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.60
56 19 0.38
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
Found at i:26618376 original size:27 final size:28
Alignment explanation
Indices: 26618319--26618388 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
26618309 GTGACAGAGT
** *
26618319 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTACGTGGCAGGGC
26618348 CACCAGAACAGATA-TACGTGGCAGGGC
1 CACCAGAACAGATATTACGTGGCAGGGC
*
26618375 CACCAAAACAGATA
1 CACCAGAACAGATA
26618389 ATTTGTGGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 23 0.62
28 7 0.19
29 7 0.19
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (28 bp):
CACCAGAACAGATATTACGTGGCAGGGC
Found at i:26618405 original size:28 final size:27
Alignment explanation
Indices: 26618327--26618407 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 27
26618317 GTCACCAGAT
* *
26618327 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATAATTTGTGGCA-TGCCACCAAA
** *
26618355 ACAGAT-ATACGTGGCAGGGCCACCAAA
1 ACAGATAATTTGTGGCA-TGCCACCAAA
26618382 ACAGATAATTTGTGGCATAGCCACCA
1 ACAGATAATTTGTGGCAT-GCCACCA
26618408 GGACGCTTCC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 22 0.51
28 21 0.49
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
ACAGATAATTTGTGGCATGCCACCAAA
Found at i:26618561 original size:28 final size:28
Alignment explanation
Indices: 26618514--26618578 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
26618504 AAATTAACCC
*
26618514 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
26618542 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
26618570 TAGGGGTAT
1 TAGGGGTAT
26618579 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:26627131 original size:16 final size:16
Alignment explanation
Indices: 26627110--26627142 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26627100 TCCTTATTTC
26627110 ATAAAA-TCACAAATTA
1 ATAAAATTCAC-AATTA
26627126 ATAAAATTCACAATTA
1 ATAAAATTCACAATTA
26627142 A
1 A
26627143 ACCATGCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAATTCACAATTA
Found at i:26632026 original size:43 final size:43
Alignment explanation
Indices: 26631945--26632029 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
26631935 AAGTTGTACA
**
26631945 ATGCCAACGTCCCAGACGTGGTCTTACATGTAGTCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
26631988 ATGCC-ACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATC
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-GTAAACACATATC
26632030 AGAATCACAG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
42 3 0.08
43 33 0.89
44 1 0.03
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:26640746 original size:19 final size:19
Alignment explanation
Indices: 26640722--26640761 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
26640712 ACCTTGAGAG
26640722 ATAAGAAACTATTTTCTAA
1 ATAAGAAACTATTTTCTAA
26640741 ATAAGAAACTATTTTCTAA
1 ATAAGAAACTATTTTCTAA
26640760 AT
1 AT
26640762 TCAATAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (19 bp):
ATAAGAAACTATTTTCTAA
Found at i:26645724 original size:27 final size:27
Alignment explanation
Indices: 26645691--26645897 Score: 315
Period size: 27 Copynumber: 7.6 Consensus size: 27
26645681 TAAATTGTGC
*
26645691 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
26645718 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
26645746 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
26645773 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
26645801 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26645828 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
26645856 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26645883 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26645898 GACTTAATAT
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
27 91 0.54
28 77 0.46
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26645755 original size:55 final size:55
Alignment explanation
Indices: 26645691--26645897 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
26645681 TAAATTGTGC
26645691 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
26645746 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
26645801 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
26645856 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
26645898 GACTTAATAT
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:26653066 original size:28 final size:28
Alignment explanation
Indices: 26653009--26653243 Score: 370
Period size: 28 Copynumber: 8.5 Consensus size: 28
26652999 TAAATTGTGC
*
26653009 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
26653036 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
26653064 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
26653091 AGCACTAAGTGTGCCAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
26653119 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
26653146 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
26653174 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
26653202 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
26653229 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26653244 GACTTAATAT
Statistics
Matches: 197, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
27 91 0.46
28 106 0.54
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:26653073 original size:55 final size:55
Alignment explanation
Indices: 26653009--26653243 Score: 382
Period size: 55 Copynumber: 4.3 Consensus size: 55
26652999 TAAATTGTGC
26653009 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
26653064 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCCAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
26653119 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
26653174 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
26653229 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26653244 GACTTAATAT
Statistics
Matches: 171, Mismatches: 8, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
55 145 0.85
56 26 0.15
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:26653128 original size:83 final size:83
Alignment explanation
Indices: 26653009--26653243 Score: 375
Period size: 83 Copynumber: 2.8 Consensus size: 83
26652999 TAAATTGTGC
*
26653009 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
26653073 TGTGCGA-ATTGACTATGT
65 TGTGCGAGATTGACTATGT
*
26653091 AGCACTAAGTGTGCCAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
* *
26653156 GTGCGAGTTTGATTATGT
66 GTGCGAGATTGACTATGT
* * * *
26653174 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
26653239 GTGCG
66 GTGCG
26653244 GACTTAATAT
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
82 41 0.29
83 101 0.71
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
GTGCGAGATTGACTATGT
Found at i:26657901 original size:40 final size:40
Alignment explanation
Indices: 26657846--26657992 Score: 224
Period size: 40 Copynumber: 3.7 Consensus size: 40
26657836 CAATTGAGGA
26657846 TTATTTCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
26657886 TTATTTCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
26657926 CTATTT-TCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCT-GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * *
26657966 TTATATCCGGGCTAAATCCCGAAGGCA
1 TTATTTCTGGGTTAAGTCCCGAAGGCA
26657993 ATTGGGTTGG
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 97 0.99
ACGTcount: A:0.18, C:0.19, G:0.29, T:0.35
Consensus pattern (40 bp):
TTATTTCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:26659250 original size:27 final size:27
Alignment explanation
Indices: 26659220--26659273 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
26659210 TGTCATGTGA
* *
26659220 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
26659247 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
26659274 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:26665217 original size:27 final size:27
Alignment explanation
Indices: 26665181--26665239 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
26665171 ATATTCTAAG
26665181 TTTTTCTTTGTAATTTAGTTTTTAATT
1 TTTTTCTTTGTAATTTAGTTTTTAATT
26665208 TTTTTCTTTGTAATTTAGTTTTTAATT
1 TTTTTCTTTGTAATTTAGTTTTTAATT
26665235 TTTTT
1 TTTTT
26665240 TTCTCTTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.17, C:0.03, G:0.07, T:0.73
Consensus pattern (27 bp):
TTTTTCTTTGTAATTTAGTTTTTAATT
Found at i:26671460 original size:26 final size:26
Alignment explanation
Indices: 26671424--26671476 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26671414 TCAGTTTCCT
26671424 TAATTAGATCAACTCGTGAATCTAAC
1 TAATTAGATCAACTCGTGAATCTAAC
26671450 TAATTAGATCAACTCGTGAATCTAAC
1 TAATTAGATCAACTCGTGAATCTAAC
26671476 T
1 T
26671477 CTCCTTGAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (26 bp):
TAATTAGATCAACTCGTGAATCTAAC
Found at i:26675973 original size:29 final size:29
Alignment explanation
Indices: 26675907--26676000 Score: 138
Period size: 28 Copynumber: 3.3 Consensus size: 29
26675897 AAGTCTACAT
* *
26675907 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
26675935 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
26675964 ACATTCATATGGCCCGTTAGGCCCAAA-C
1 ACATTCATATGGCCCATTAGGCCCAAATC
26675992 ACATTCATA
1 ACATTCATA
26676001 GTCATGCAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
28 31 0.52
29 29 0.48
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:26685236 original size:26 final size:27
Alignment explanation
Indices: 26685186--26685237 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
26685176 TCTAGGGGAC
* *
26685186 ACACGCCCATGTGGCCAAGCCATGTGA
1 ACACGACCATGTGCCCAAGCCATGTGA
26685213 ACACGACCATGT-CCCAAGCCATGTG
1 ACACGACCATGTGCCCAAGCCATGTG
26685238 GGCATTCGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (27 bp):
ACACGACCATGTGCCCAAGCCATGTGA
Found at i:26692176 original size:40 final size:40
Alignment explanation
Indices: 26692093--26692315 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 40
26692083 TTGAATGCTG
* * ** * *
26692093 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGATACTAAA
* * *
26692133 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* * *
26692173 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * * **
26692213 GCCGGGCTAAGTCCCGAAGGCATTCGTACGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * * *
26692253 TCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
26692292 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26692316 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
39 33 0.21
40 113 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:26692230 original size:80 final size:79
Alignment explanation
Indices: 26692093--26692350 Score: 243
Period size: 80 Copynumber: 3.3 Consensus size: 79
26692083 TTGAATGCTG
* * * ** * * * * *
26692093 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
26692157 TGTGCGAGATACTAAA
64 TGTACGAGATACTAAA
* * *
26692173 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGCTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* **
26692238 GTACGAGTTGTTAAA
65 GTACGAGATACTAAA
* * *
26692253 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
* * *
26692318 AACGAGGA-GCTATA
66 TACGA-GATACTAAA
*
26692332 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26692351 TACGTGATTT
Statistics
Matches: 148, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
78 14 0.09
79 48 0.32
80 82 0.55
81 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TACGAGATACTAAA
Found at i:26692314 original size:79 final size:80
Alignment explanation
Indices: 26692169--26692350 Score: 242
Period size: 79 Copynumber: 2.3 Consensus size: 80
26692159 TGCGAGATAC
* *
26692169 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGCTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
26692234 ATTCGTACGAGTTGT
66 ATTCGTACGAGTTGT
* * *
26692249 TAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
* * ** *
26692313 ATTTGAACGAGGAGC
66 ATTCGTACGAGTTGT
* *
26692328 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
26692351 TACGTGATTT
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.16
79 48 0.54
80 27 0.30
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGTACGAGTTGT
Found at i:26695240 original size:27 final size:27
Alignment explanation
Indices: 26695210--26695387 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
26695200 ATATTGAGCC
* * *
26695210 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
26695237 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26695264 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
* ** *
26695292 CGCACACTTAGTGCTGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26695319 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
26695346 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
26695373 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26695388 GTACAATTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 100 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26695303 original size:55 final size:55
Alignment explanation
Indices: 26695210--26695387 Score: 195
Period size: 54 Copynumber: 3.3 Consensus size: 55
26695200 ATATTGAGCC
* * * *
26695210 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
26695264 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCTGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCAACATAGTCAAAT
** *
26695319 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCAACATAGTCAAAT
26695373 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26695388 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 44 0.43
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:26695349 original size:82 final size:81
Alignment explanation
Indices: 26695231--26695388 Score: 219
Period size: 82 Copynumber: 1.9 Consensus size: 81
26695221 TGCTATACAA
* * *
26695231 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
26695296 CACTTAGTGCTGCATGG
65 CACTTAGTGCTGCATGG
* * ** *
26695313 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
26695377 CACTTAGTGCTG
65 CACTTAGTGCTG
26695389 TACAATTTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 22 0.33
82 45 0.67
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCTGCATGG
Found at i:26703132 original size:27 final size:27
Alignment explanation
Indices: 26703102--26703279 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
26703092 ATATTGAGCC
* * *
26703102 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
26703129 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
26703156 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
26703184 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
26703211 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
26703238 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
26703265 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26703280 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:26703195 original size:55 final size:55
Alignment explanation
Indices: 26703102--26703279 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
26703092 ATATTGAGCC
* * *
26703102 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
26703156 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
26703211 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
26703265 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26703280 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:26703241 original size:82 final size:81
Alignment explanation
Indices: 26703123--26703278 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26703113 TGCTATACAA
* * *
26703123 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
26703188 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26703205 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
26703269 CACTTAGTGC
65 CACTTAGTGC
26703279 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26706998 original size:40 final size:40
Alignment explanation
Indices: 26706954--26707214 Score: 301
Period size: 39 Copynumber: 6.7 Consensus size: 40
26706944 GCTCCTCGTT
* *
26706954 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
26706994 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
26707034 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
26707073 -AAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26707111 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
26707150 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
26707191 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26707215 CATCATTCAA
Statistics
Matches: 197, Mismatches: 15, Indels: 19
0.85 0.06 0.08
Matches are distributed among these distances:
38 37 0.19
39 85 0.43
40 64 0.32
41 11 0.06
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:26707118 original size:77 final size:76
Alignment explanation
Indices: 26706954--26707212 Score: 280
Period size: 77 Copynumber: 3.3 Consensus size: 76
26706944 GCTCCTCGTT
* ** *
26706954 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTT-AGCCG
* *
26707018 GATTTAGTAACTCGCA
62 GAATTAGT-ACTTGCA
26707034 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA-AAATGCCTTCGGGCTTAGCCTGGA
1 CAAATGCCTTCGGGACTTAGCCCG-AATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCC-GGA
26707097 ATTAGTATCTTGCA
64 ATTAGTA-CTTGCA
*
26707111 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTATCTCGCACAAATGCCTTCGG-GCTTAG-CCGG
26707175 ATATT-GTCACTTAGCA
63 A-ATTAGT-ACTT-GCA
26707191 C-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
26707213 GACATCATTC
Statistics
Matches: 160, Mismatches: 7, Indels: 26
0.83 0.04 0.13
Matches are distributed among these distances:
76 4 0.03
77 53 0.33
78 38 0.24
79 40 0.25
80 25 0.16
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (76 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCGGAAT
TAGTACTTGCA
Found at i:26715042 original size:39 final size:40
Alignment explanation
Indices: 26714881--26715144 Score: 326
Period size: 40 Copynumber: 6.7 Consensus size: 40
26714871 GCTCCTCGTT
*
26714881 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
26714921 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
26714961 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
26715001 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
*
26715040 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
* * * *
26715079 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ATC-TCGCA
26715120 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26715145 CATCATTCAA
Statistics
Matches: 203, Mismatches: 14, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 71 0.35
40 116 0.57
41 14 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:26717299 original size:9 final size:10
Alignment explanation
Indices: 26717279--26717307 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
26717269 ATTGCATGTT
26717279 TGAATAGAAA
1 TGAATAGAAA
26717289 TGAAT-GAAA
1 TGAATAGAAA
26717298 TGAATAGAAA
1 TGAATAGAAA
26717308 AAGAGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:26736345 original size:32 final size:32
Alignment explanation
Indices: 26736308--26736372 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
26736298 GTTTACAAGG
26736308 TACGAGAAAAGATTTTAAAGTATTTTATTTCA
1 TACGAGAAAAGATTTTAAAGTATTTTATTTCA
26736340 TACGAGAAAAGATTTTAAAGTATTTTATTTCA
1 TACGAGAAAAGATTTTAAAGTATTTTATTTCA
26736372 T
1 T
26736373 GTCGTAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (32 bp):
TACGAGAAAAGATTTTAAAGTATTTTATTTCA
Done.