Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 93 of 214
Found at i:26749467 original size:38 final size:38
Alignment explanation
Indices: 26749414--26749491 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
26749404 TATGTCAGCA
*
26749414 AGTAAAAGCTGAACATCAGGTGCCTTCTGGTTTGTTGT
1 AGTAAAAGCTCAACATCAGGTGCCTTCTGGTTTGTTGT
26749452 AGTAAAAGCTCAACATCAGGTGCCTTCTGGTTTGTTGT
1 AGTAAAAGCTCAACATCAGGTGCCTTCTGGTTTGTTGT
26749490 AG
1 AG
26749492 CCAGTGATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (38 bp):
AGTAAAAGCTCAACATCAGGTGCCTTCTGGTTTGTTGT
Found at i:26751842 original size:30 final size:30
Alignment explanation
Indices: 26751808--26751877 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 30
26751798 TGAGTCTCTT
26751808 GGTCGTGTGAGTCACACGACCTGGCCACAC
1 GGTCGTGTGAGTCACACGACCTGGCCACAC
*
26751838 GGTCGTGCGAGTCACACGACCTGGCCACAC
1 GGTCGTGTGAGTCACACGACCTGGCCACAC
*
26751868 GGCCGTGTGA
1 GGTCGTGTGA
26751878 CCCCTACAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (30 bp):
GGTCGTGTGAGTCACACGACCTGGCCACAC
Found at i:26753434 original size:20 final size:20
Alignment explanation
Indices: 26753409--26753447 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
26753399 CCTTGCGAAC
26753409 TCTGATTGAAGAAGTTTCAT
1 TCTGATTGAAGAAGTTTCAT
26753429 TCTGATTGAAGAAGTTTCA
1 TCTGATTGAAGAAGTTTCA
26753448 AGTGTATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (20 bp):
TCTGATTGAAGAAGTTTCAT
Found at i:26759639 original size:39 final size:39
Alignment explanation
Indices: 26759596--26759775 Score: 261
Period size: 39 Copynumber: 4.6 Consensus size: 39
26759586 AACATGTTTT
* * * *
26759596 TGAGTATTGTGATATATGTTTGAATATTATGTGGTTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
26759635 TGAGTATTGTAATATATGCTTAAACGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
26759674 TGAGAATTATGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
26759713 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
26759752 TGTGTAATGTGATATATGTTTAAA
1 TGAGTATTGTGATATATGCTTAAA
26759776 AGTGAATTGA
Statistics
Matches: 126, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 126 1.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:26763078 original size:24 final size:24
Alignment explanation
Indices: 26763051--26763116 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 24
26763041 AATTTAAAGG
26763051 ATGTATAATGCTTTCCTTTAAATA
1 ATGTATAATGCTTTCCTTTAAATA
* *
26763075 ATG--TAATAGC--TCCTTTGAATG
1 ATGTATAAT-GCTTTCCTTTAAATA
*
26763096 ATGTATAATGTTTTCCTTTAA
1 ATGTATAATGCTTTCCTTTAA
26763117 TTGATGTAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
21 12 0.36
22 5 0.15
23 6 0.18
24 10 0.30
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (24 bp):
ATGTATAATGCTTTCCTTTAAATA
Found at i:26763339 original size:9 final size:9
Alignment explanation
Indices: 26763311--26763356 Score: 65
Period size: 10 Copynumber: 4.9 Consensus size: 9
26763301 ATTTATTAAC
26763311 AAACACATT
1 AAACACATT
26763320 AAAACACATT
1 -AAACACATT
*
26763330 AAACATATT
1 AAACACATT
26763339 AAACACATTT
1 AAACACA-TT
26763349 AAACACAT
1 AAACACAT
26763357 ATTAGACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
9 15 0.45
10 18 0.55
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.24
Consensus pattern (9 bp):
AAACACATT
Found at i:26763339 original size:19 final size:19
Alignment explanation
Indices: 26763311--26763356 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
26763301 ATTTATTAAC
26763311 AAACACATTAAAACACA-TT
1 AAACACATT-AAACACATTT
*
26763330 AAACATATTAAACACATTT
1 AAACACATTAAACACATTT
26763349 AAACACAT
1 AAACACAT
26763357 ATTAGACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.24
Consensus pattern (19 bp):
AAACACATTAAACACATTT
Found at i:26763486 original size:19 final size:19
Alignment explanation
Indices: 26763459--26763497 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26763449 TTATTCCAGC
26763459 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
*
26763478 AACTTAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
26763497 A
1 A
26763498 GTAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.28
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:26763522 original size:35 final size:35
Alignment explanation
Indices: 26763478--26763551 Score: 121
Period size: 35 Copynumber: 2.1 Consensus size: 35
26763468 AACTAAGATG
* *
26763478 AACTTAATTAACTAAGATGAGTAATTTATTCCAGC
1 AACTCAATTAACTAAGATGAGTAATTTATTCCAAC
*
26763513 AACTCAATTAACTAAGATGAGTAATTTTTTCCAAC
1 AACTCAATTAACTAAGATGAGTAATTTATTCCAAC
26763548 AACT
1 AACT
26763552 AAACACTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (35 bp):
AACTCAATTAACTAAGATGAGTAATTTATTCCAAC
Found at i:26763658 original size:20 final size:21
Alignment explanation
Indices: 26763629--26763669 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
26763619 GAGCTTGAAG
*
26763629 AAGCTAAAATTGAGC-TCATT
1 AAGCTAAAATTAAGCTTCATT
*
26763649 AAGCTGAAATTAAGCTTCATT
1 AAGCTAAAATTAAGCTTCATT
26763670 TTTCACTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (21 bp):
AAGCTAAAATTAAGCTTCATT
Found at i:26772102 original size:25 final size:25
Alignment explanation
Indices: 26772060--26772113 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
26772050 TTTTCTCAAA
*
26772060 AATTTAATTAATATAAAATATTA-AT
1 AATTTAATAAATATAAAA-ATTAGAT
26772085 AATTTAATAAAT-TGAAAAATTAGAT
1 AATTTAATAAATAT-AAAAATTAGAT
26772110 AATT
1 AATT
26772114 AAATTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.41
Consensus pattern (25 bp):
AATTTAATAAATATAAAAATTAGAT
Found at i:26772151 original size:25 final size:26
Alignment explanation
Indices: 26772117--26772177 Score: 70
Period size: 30 Copynumber: 2.2 Consensus size: 26
26772107 GATAATTAAA
26772117 TTAAAATTTAG-GAGCAACCAAATTT
1 TTAAAATTTAGAGAGCAACCAAATTT
*
26772142 TTAATATTTAGAAAAAGAGCAACCAAATTT
1 TTAAAATTTAG----AGAGCAACCAAATTT
26772172 TTAAAA
1 TTAAAA
26772178 ATAATTCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 10 0.34
30 19 0.66
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (26 bp):
TTAAAATTTAGAGAGCAACCAAATTT
Found at i:26776583 original size:49 final size:49
Alignment explanation
Indices: 26776530--26776701 Score: 181
Period size: 49 Copynumber: 3.5 Consensus size: 49
26776520 TGTCCCAGAC
*
26776530 ATGGTCTTATATGGGATGTT-TCATGTACTGCCAATGTCATATCTCAAAT
1 ATGGTCTTACATGGGA-GTTCTCATGTACTGCCAATGTCATATCTCAAAT
* * * * * * *
26776579 ATGGTCTTACATGGGAGTTCTCATAT-CGGTTCTC-ATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGAGTTCTCATGTAC--TGC-CAATGTCATATCTCAAAT
* *
26776629 ATGGTCTTATATGGGATGTT-TCATGTACTGCGAATGTCATATCTCAAAT
1 ATGGTCTTACATGGGA-GTTCTCATGTACTGCCAATGTCATATCTCAAAT
26776678 ATGGTCTTACATGGGAGTTCTCAT
1 ATGGTCTTACATGGGAGTTCTCAT
26776702 ATCGGTTCCC
Statistics
Matches: 97, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
48 7 0.07
49 52 0.54
50 33 0.34
51 5 0.05
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.37
Consensus pattern (49 bp):
ATGGTCTTACATGGGAGTTCTCATGTACTGCCAATGTCATATCTCAAAT
Found at i:26776637 original size:50 final size:49
Alignment explanation
Indices: 26776516--26776899 Score: 242
Period size: 50 Copynumber: 7.6 Consensus size: 49
26776506 ACATGCCAAA
* *
26776516 GCCATGTCCCAGACATGGTCTTATATGGGATGTT-TCATGTAC--TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGGTGCC-AT
* * * * * *
26776565 GTCATATCTCAAATATGGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGC-CAT
* * *
26776615 GCCATGTCCCAGACATGGTCTTATATGGGATGTT-TCATGTAC--TGCGAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGGTGC-CAT
* * * * * *
26776664 GTCATATCTCAAATATGGTCTTACATGGGAGTTCTCATATCGGTTCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG-TGCCAT
* *** ** * *
26776714 GCCATGTCCCAGACATGGACTTATGGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCC-AT
** * * * *
26776764 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCAGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCC-AT
* * * *
26776814 ACCATGTCCCAGACATGGTCTTACATGGGACCTGTCATGATCTCAAGGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-GT-TC-TCATATC--GG-TGCC-AT
26776870 G-CATTGTCCCAGACATGGTCTTACATGGGA
1 GCCA-TGTCCCAGACATGGTCTTACATGGGA
26776900 TCTCTTTGCC
Statistics
Matches: 263, Mismatches: 54, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
48 8 0.03
49 65 0.25
50 140 0.53
51 8 0.03
52 2 0.01
53 5 0.02
55 3 0.01
56 32 0.12
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGGTGCCAT
Found at i:26776687 original size:99 final size:99
Alignment explanation
Indices: 26776516--26776737 Score: 417
Period size: 99 Copynumber: 2.2 Consensus size: 99
26776506 ACATGCCAAA
26776516 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
1 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
*
26776581 GGTCTTACATGGGAGTTCTCATATCGGTTCTCAT
66 GGTCTTACATGGGAGTTCTCATATCGGTTCCCAT
*
26776615 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCGAATGTCATATCTCAAATAT
1 GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
26776680 GGTCTTACATGGGAGTTCTCATATCGGTTCCCAT
66 GGTCTTACATGGGAGTTCTCATATCGGTTCCCAT
*
26776714 GCCATGTCCCAGACATGGACTTAT
1 GCCATGTCCCAGACATGGTCTTAT
26776738 GGGGGACCTC
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 120 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (99 bp):
GCCATGTCCCAGACATGGTCTTATATGGGATGTTTCATGTACTGCCAATGTCATATCTCAAATAT
GGTCTTACATGGGAGTTCTCATATCGGTTCCCAT
Found at i:26780082 original size:56 final size:56
Alignment explanation
Indices: 26779996--26780171 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
26779986 ACAAGGGATG
** *
26779996 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAACAGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26780052 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26780108 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26780164 ATGGGCAA
1 ATGGGCAA
26780172 TAAACTAATA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:26781530 original size:40 final size:40
Alignment explanation
Indices: 26781299--26781523 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
26781289 TCGAATGATG
* * * *
26781299 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26781339 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26781379 TCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26781418 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26781458 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26781499 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26781524 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26781545 original size:119 final size:119
Alignment explanation
Indices: 26781299--26781556 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
26781289 TCGAATGATG
* *
26781299 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ***
26781364 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
26781418 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
26781481 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
26781538 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26781557 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:26787686 original size:150 final size:154
Alignment explanation
Indices: 26787413--26787760 Score: 388
Period size: 150 Copynumber: 2.3 Consensus size: 154
26787403 TGATAATAAC
* * ** * * * *
26787413 ATGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATGTTTC-ATGTAC--TGCCAATGTCAT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGA--CACGGTGCCAACGCCAT
* * * ** * **
26787475 ATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCACACATGGTC
64 GTCCCAGGTATGGTCTTACATGGGACCTCTCATATCGGTGCCAACACCATGTCCCACACATGGTC
26787540 TTACGA-GGGACCTCTC-ATCTC-A-G
129 TTAC-ATGGGACCTCTCAATCTCAAGG
*
26787563 -TGCCAACGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCGACACGGTGCCAACGCCATGT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGACACGGTGCCAACGCCATGT
* * * *
26787627 CCCAGGTATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACACCATGTGCGAGACATGGTCTT
66 CCCAGGTATGGTCTTACATGGGACCTCTCATATCGGTGCCAACACCATGTCCCACACATGGTCTT
26787692 ACATGGGACCTCTCATGATCTCAAGG
131 ACATGGGACCTCTCA--ATCTCAAGG
* *
26787718 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26787761 TTACCCAAAT
Statistics
Matches: 164, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
148 2 0.01
149 38 0.23
150 78 0.48
153 5 0.03
154 1 0.01
155 1 0.01
156 39 0.24
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (154 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGACACGGTGCCAACGCCATGT
CCCAGGTATGGTCTTACATGGGACCTCTCATATCGGTGCCAACACCATGTCCCACACATGGTCTT
ACATGGGACCTCTCAATCTCAAGG
Found at i:26787740 original size:56 final size:50
Alignment explanation
Indices: 26787414--26787760 Score: 342
Period size: 50 Copynumber: 6.8 Consensus size: 50
26787404 GATAATAACA
* * ** * *
26787414 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * * * ** *
26787463 TGCCAATGTCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
26787513 TGCCCATGCCATGTCCCACACATGGTCTTACGA-GGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGG
* *
26787563 TGCCAACGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCGA-CACGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-ATCTCGG
**
26787613 TGCCAACGCCATGTCCCAGGTATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
26787663 TGCCAACACCATGTGCGAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC--GG
* *
26787718 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26787761 TTACCCAAAT
Statistics
Matches: 248, Mismatches: 38, Indels: 17
0.82 0.13 0.06
Matches are distributed among these distances:
48 1 0.00
49 39 0.16
50 162 0.65
51 2 0.01
53 5 0.02
55 2 0.01
56 37 0.15
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:26788131 original size:30 final size:30
Alignment explanation
Indices: 26788097--26788154 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26788087 CCTCGACTCT
*
26788097 AACTTTGGCAAAATTACAATTTTGCCCTTA
1 AACTTTGACAAAATTACAATTTTGCCCTTA
* * *
26788127 AACTTTTACATAATTACACTTTTGCCCT
1 AACTTTGACAAAATTACAATTTTGCCCT
26788155 AAAGCTCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGACAAAATTACAATTTTGCCCTTA
Found at i:26798410 original size:23 final size:23
Alignment explanation
Indices: 26798382--26798442 Score: 113
Period size: 23 Copynumber: 2.7 Consensus size: 23
26798372 CTGTGTTATA
26798382 ATGTTCATGTTTTGGTTTCTGTT
1 ATGTTCATGTTTTGGTTTCTGTT
26798405 ATGTTCATGTTTTGGTTTCTGTT
1 ATGTTCATGTTTTGGTTTCTGTT
*
26798428 AAGTTCATGTTTTGG
1 ATGTTCATGTTTTGG
26798443 ATCATGTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.11, C:0.08, G:0.23, T:0.57
Consensus pattern (23 bp):
ATGTTCATGTTTTGGTTTCTGTT
Found at i:26798455 original size:35 final size:35
Alignment explanation
Indices: 26798409--26798475 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
26798399 TCTGTTATGT
26798409 TCATGTTTTGGTTTCTGTTAAGTTCATGTTTTGGA
1 TCATGTTTTGGTTTCTGTTAAGTTCATGTTTTGGA
*
26798444 TCATGTTTTGGTTTCTGTTAATTTCATGTTTT
1 TCATGTTTTGGTTTCTGTTAAGTTCATGTTTT
26798476 TCTGTATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.13, C:0.09, G:0.19, T:0.58
Consensus pattern (35 bp):
TCATGTTTTGGTTTCTGTTAAGTTCATGTTTTGGA
Found at i:26798462 original size:12 final size:12
Alignment explanation
Indices: 26798384--26798456 Score: 64
Period size: 12 Copynumber: 6.2 Consensus size: 12
26798374 GTGTTATAAT
26798384 GTTCATGTTTTG
1 GTTCATGTTTTG
*
26798396 GTTTC-TGTTAT-
1 G-TTCATGTTTTG
26798407 GTTCATGTTTTG
1 GTTCATGTTTTG
**
26798419 GTTTC-TG-TTAA
1 G-TTCATGTTTTG
26798430 GTTCATGTTTTG
1 GTTCATGTTTTG
*
26798442 GATCATGTTTTG
1 GTTCATGTTTTG
26798454 GTT
1 GTT
26798457 TCTGTTAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
10 6 0.13
11 11 0.23
12 24 0.51
13 6 0.13
ACGTcount: A:0.11, C:0.08, G:0.23, T:0.58
Consensus pattern (12 bp):
GTTCATGTTTTG
Found at i:26799430 original size:11 final size:11
Alignment explanation
Indices: 26799414--26799440 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26799404 AAATTATATT
26799414 ATATTTTTTTA
1 ATATTTTTTTA
26799425 ATATTTTTTTA
1 ATATTTTTTTA
26799436 ATATT
1 ATATT
26799441 CCAATTTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
ATATTTTTTTA
Found at i:26799562 original size:16 final size:16
Alignment explanation
Indices: 26799533--26799571 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
26799523 TTAAATTAAA
26799533 TTAA-ATTTTCTATTT
1 TTAATATTTTCTATTT
*
26799548 TTAATATTTTTTATTT
1 TTAATATTTTCTATTT
*
26799564 TTCATATT
1 TTAATATT
26799572 CCAATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (16 bp):
TTAATATTTTCTATTT
Found at i:26799685 original size:16 final size:16
Alignment explanation
Indices: 26799666--26799698 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26799656 TATTATATTA
26799666 TTTTTATTTTTAATAT
1 TTTTTATTTTTAATAT
26799682 TTTTTATTTTTAATAT
1 TTTTTATTTTTAATAT
26799698 T
1 T
26799699 CCAATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTATTTTTAATAT
Found at i:26799725 original size:127 final size:127
Alignment explanation
Indices: 26799300--26799929 Score: 986
Period size: 131 Copynumber: 5.0 Consensus size: 127
26799290 TAAATTTTGG
* * * *
26799300 ATATTTTTTATATATAAGATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
* * * *
26799365 TGCATAAAACTAATTAAATTATATATTTACAAATTAATTAAATTATATTA-TATT-TTTTTA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTA
* * *
26799425 ATA----TT-TTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAATTAAAAATAATTAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTG-TTAAAATAAAAATAATTAA
* *
26799485 ATGCATAAAACTAATTAAATTATGTATTAACAAATTAATTAAATTAAATTAAATTTTCTATTTTT
65 ATGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATT--ATTTT-TATTTTT
26799550 A
127 A
* *
26799551 ATATTTTTTATTTTTCATATTCCAATTTATTAAATAATTCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
26799616 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTA
26799678 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
*
26799743 TGCATAAAACTAATTAAATTATGTATTAAAAAATTAATTATATTATATTATATTTTTTTATTTTT
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATA-T-TA--TTTTTATTTTT
26799808 A
127 A
*
26799809 ATATTTTTTATTTTTAATATTCTAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
26799874 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTA
26799930 ATATTCCAAT
Statistics
Matches: 467, Mismatches: 23, Indels: 28
0.90 0.04 0.05
Matches are distributed among these distances:
120 30 0.06
121 66 0.14
123 1 0.00
124 2 0.00
125 4 0.01
126 9 0.02
127 123 0.26
128 6 0.01
129 4 0.01
130 68 0.15
131 154 0.33
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (127 bp):
ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTA
Found at i:26799817 original size:16 final size:16
Alignment explanation
Indices: 26799796--26799829 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
26799786 TATATTATAT
26799796 TTTTTTATTTTTAATA
1 TTTTTTATTTTTAATA
26799812 TTTTTTATTTTTAATA
1 TTTTTTATTTTTAATA
26799828 TT
1 TT
26799830 CTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTATTTTTAATA
Found at i:26799855 original size:258 final size:253
Alignment explanation
Indices: 26799300--26799929 Score: 1014
Period size: 258 Copynumber: 2.5 Consensus size: 253
26799290 TAAATTTTGG
* * * *
26799300 ATATTTTTTATATATAAGATTCCAATTTATTAAATAATGCATCTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
* * * *
26799365 TGCATAAAACTAATTAAATTATATATTTACAAATTAATTAAATTATATTA-TATT-TTTTTAATA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTAATA
*
26799428 TTTTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAATTAAAAATAATTAAATGCATAA
131 TTTTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAAATAAAAATAATTAAATGCATAA
*
26799493 AACTAATTAAATTATGTATTAACAAATTAATTAAATTAAATTAAATTTTCTATTTTTA
196 AACTAATTAAATTATGTATTAAAAAATTAATTAAATTAAATTAAATTTTCTATTTTTA
* *
26799551 ATATTTTTTATTTTTCATATTCCAATTTATTAAATAATTCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
26799616 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTAATA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTAATA
* *
26799681 TTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTG-TTAAAATAAAAATAATTAAATG
131 ----TT-TTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAAATAAAAATAATTAAATG
* * * *
26799745 CATAAAACTAATTAAATTATGTATTAAAAAATTAATTATATTATATTATATTTTTTTATTTTTA
191 CATAAAACTAATTAAATTATGTATTAAAAAATTAATTAAATTAAATTA-AATTTTCTATTTTTA
*
26799809 ATATTTTTTATTTTTAATATTCTAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
1 ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
26799874 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTA
66 TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTA
26799930 ATATTCCAAT
Statistics
Matches: 350, Mismatches: 21, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
251 106 0.30
252 3 0.01
253 9 0.03
257 67 0.19
258 165 0.47
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (253 bp):
ATATTTTTTATTTTTAATATTCCAATTTATTAAATAATGCATTTGTTAAAATAAAAATAATTAAA
TGCATAAAACTAATTAAATTATGTATTAACAAATTAATTATATTATATTATTTTTATTTTTAATA
TTTTTTTAATATTCCAATTTATCAAATAATGCATTTGAGTAAAATAAAAATAATTAAATGCATAA
AACTAATTAAATTATGTATTAAAAAATTAATTAAATTAAATTAAATTTTCTATTTTTA
Found at i:26801593 original size:30 final size:30
Alignment explanation
Indices: 26801559--26801630 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
26801549 TCTAGCATCC
* *
26801559 CCATTCAGCTCCCTAAATACATGCATGCCT
1 CCATTCAGCTCCCTAAACACATGCATGCAT
* *
26801589 CCATTCAGCTCCTTAAACACATTCATGCAT
1 CCATTCAGCTCCCTAAACACATGCATGCAT
**
26801619 TAATTCAGCTCC
1 CCATTCAGCTCC
26801631 ATATGCACAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.28, C:0.35, G:0.08, T:0.29
Consensus pattern (30 bp):
CCATTCAGCTCCCTAAACACATGCATGCAT
Found at i:26803785 original size:49 final size:49
Alignment explanation
Indices: 26803729--26803833 Score: 165
Period size: 49 Copynumber: 2.1 Consensus size: 49
26803719 TCATGTTTTA
* * * * *
26803729 TAATTTTATACAGTGTTGAGCTTTTGTTTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
26803778 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
26803827 TAATTTT
1 TAATTTT
26803834 TTTTCTTAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.51
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:26805343 original size:120 final size:120
Alignment explanation
Indices: 26805212--26805522 Score: 563
Period size: 120 Copynumber: 2.6 Consensus size: 120
26805202 GATTATTTCA
*
26805212 TATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATT
1 TATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAATT
26805277 CATATAAGAATATTTAATACT-AAGAATTTTATTAAATTATATATTTTTATTAAAT
66 CATATAAGAATATTTAATACTAAAGAATTTTATTAAATTATATA-TTTTATTAAAT
*
26805332 TATATTTAATAATAATTATTTTCAATTATATTTTATAGTATTATATATTATGATTTTAATAAATT
1 TATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAATT
*
26805397 CATATAAGAATATTTAATACTAAAGAATTTTATTAAATTATATATTTTGTTAAAT
66 CATATAAGAATATTTAATACTAAAGAATTTTATTAAATTATATATTTTATTAAAT
26805452 TATATTTAAT-ATCAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAAT
1 TATATTTAATAAT-AATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAAT
26805516 TCATATA
65 TCATATA
26805523 TTTTATTAAA
Statistics
Matches: 185, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
119 2 0.01
120 161 0.87
121 22 0.12
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (120 bp):
TATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAATAAATT
CATATAAGAATATTTAATACTAAAGAATTTTATTAAATTATATATTTTATTAAAT
Found at i:26805457 original size:15 final size:17
Alignment explanation
Indices: 26805423--26805538 Score: 64
Period size: 17 Copynumber: 7.0 Consensus size: 17
26805413 ATACTAAAGA
26805423 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
26805440 ATTTTGTTAAA-T-TAT
1 ATTTTATTAAATTATAT
* *
26805455 ATTTAATATCAATTAT-T
1 ATTTTAT-TAAATTATAT
** * *
26805472 -TTAAATTATATTTTAT
1 ATTTTATTAAATTATAT
* * *
26805488 AGTATTA-TATATTAT-G
1 A-TTTTATTAAATTATAT
*
26805504 ATTTTAATAAATTCATAT
1 ATTTTATTAAATT-ATAT
26805522 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
26805539 TTAATAATAA
Statistics
Matches: 73, Mismatches: 17, Indels: 18
0.68 0.16 0.17
Matches are distributed among these distances:
15 17 0.23
16 16 0.22
17 25 0.34
18 15 0.21
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:26805523 original size:41 final size:39
Alignment explanation
Indices: 26805358--26805538 Score: 104
Period size: 41 Copynumber: 4.5 Consensus size: 39
26805348 TATTTTCAAT
26805358 TATATTTTATAGTATTATATATTATGATTTTAATAAATTCA
1 TATATTTTATA-TATTATATATTATGATTTTAATAAATT-A
*** * * *
26805399 TATA-AGAATAT-TTA-ATACTAAAGAATTTTATTAAATTA
1 TATATTTTATATATTATATA-TTATG-ATTTTAATAAATTA
* * * * *
26805437 TATATTTTGTTAAATTATATTTAATATCAATTATT-TTAAA-T-
1 TATATTTT-ATATATTATA--TATTAT-GATT-TTAATAAATTA
26805478 TATATTTTATAGTATTATATATTATGATTTTAATAAATTCA
1 TATATTTTATA-TATTATATATTATGATTTTAATAAATT-A
*
26805519 TATATTTTATTAAATTATAT
1 TATATTTTA-TATATTATAT
26805539 TTAATAATAA
Statistics
Matches: 103, Mismatches: 21, Indels: 32
0.66 0.13 0.21
Matches are distributed among these distances:
37 5 0.05
38 18 0.17
39 19 0.18
40 7 0.07
41 37 0.36
42 4 0.04
43 9 0.09
44 4 0.04
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.52
Consensus pattern (39 bp):
TATATTTTATATATTATATATTATGATTTTAATAAATTA
Found at i:26805527 original size:18 final size:17
Alignment explanation
Indices: 26805504--26805538 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26805494 ATATATTATG
26805504 ATTTTAATAAATTCATAT
1 ATTTTAATAAATT-ATAT
*
26805522 ATTTTATTAAATTATAT
1 ATTTTAATAAATTATAT
26805539 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTAATAAATTATAT
Found at i:26805558 original size:26 final size:26
Alignment explanation
Indices: 26805324--26805377 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
26805314 TATATATTTT
26805324 TATTAAATTATATTTAATAATAATTA
1 TATTAAATTATATTTAATAATAATTA
* * * *
26805350 TTTTCAATTATATTTTATAGT-ATTA
1 TATTAAATTATATTTAATAATAATTA
26805375 TAT
1 TAT
26805378 ATTATGATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (26 bp):
TATTAAATTATATTTAATAATAATTA
Found at i:26805787 original size:46 final size:44
Alignment explanation
Indices: 26805696--26805803 Score: 126
Period size: 46 Copynumber: 2.4 Consensus size: 44
26805686 ATAACAACAT
* * **
26805696 CATTCCATTCAACCAAATACAAGAATACTATTACAGTTCTATTC
1 CATTCCATTCAACCAAACAAAAGAATACTATTACACCTCTATTC
*
26805740 CATTCCATTCAACCAAACAAAAGGATTACCTATTACACCTCTATTC
1 CATTCCATTCAACCAAACAAAA-GAATA-CTATTACACCTCTATTC
* * *
26805786 CATTACAGTGAACCAAAC
1 CATTCCATTCAACCAAAC
26805804 GTACCCTTTG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 20 0.37
45 4 0.07
46 30 0.56
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.28
Consensus pattern (44 bp):
CATTCCATTCAACCAAACAAAAGAATACTATTACACCTCTATTC
Found at i:26817883 original size:17 final size:17
Alignment explanation
Indices: 26817861--26817897 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
26817851 GTTAGTGCAC
*
26817861 ATTGTCATTGCATTTCA
1 ATTGTCATTACATTTCA
*
26817878 ATTGTCATTACATTTTA
1 ATTGTCATTACATTTCA
26817895 ATT
1 ATT
26817898 TTAGTGCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (17 bp):
ATTGTCATTACATTTCA
Found at i:26821683 original size:35 final size:35
Alignment explanation
Indices: 26821644--26821711 Score: 111
Period size: 35 Copynumber: 1.9 Consensus size: 35
26821634 ACAAAGCCAT
*
26821644 CATTACCTTATTG-ATGTAAGTGTGTTTTCGTCCAA
1 CATTACCTT-GTGCATGTAAGTGTGTTTTCGTCCAA
26821679 CATTACCTTGTGCATGTAAGTGTGTTTTCGTCC
1 CATTACCTTGTGCATGTAAGTGTGTTTTCGTCC
26821712 CATTTTTAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 2 0.06
35 29 0.94
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (35 bp):
CATTACCTTGTGCATGTAAGTGTGTTTTCGTCCAA
Found at i:26822393 original size:29 final size:29
Alignment explanation
Indices: 26822357--26822447 Score: 155
Period size: 29 Copynumber: 3.1 Consensus size: 29
26822347 TTATTGACAC
*
26822357 CCATCGAATATGAAAAGAGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
26822386 CCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
**
26822415 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGACGA
26822444 CCAT
1 CCAT
26822448 TGTTTAGCAC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.20
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGACGA
Found at i:26826344 original size:51 final size:51
Alignment explanation
Indices: 26826224--26826408 Score: 151
Period size: 51 Copynumber: 3.6 Consensus size: 51
26826214 AAAGTGACGG
* * * * * * *
26826224 TCACGTGTGTAGTACTATGTGTAGGTTACTACGTGTACCGGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAAT-GA
* * *
26826274 TCGCATTTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAAT-GA
** ** * * * * *
26826325 TCATGTGTGTAGTACTATGTGCAACCTACTACGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGA
*
26826376 TCACATGTGTAGTACTATGTGTAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
26826409 TGAACCGAAC
Statistics
Matches: 104, Mismatches: 28, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
50 35 0.34
51 67 0.64
52 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGA
Found at i:26826468 original size:45 final size:45
Alignment explanation
Indices: 26826412--26826506 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
26826402 TACTATGTGA
* * *
26826412 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGTTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
* * *
26826457 ACCGGACATCATTGATTAATAAGGTGGTTGTTTTGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
26826502 ACCGA
1 ACCGA
26826507 GTATCTGTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:26831671 original size:25 final size:25
Alignment explanation
Indices: 26831642--26831761 Score: 136
Period size: 25 Copynumber: 4.8 Consensus size: 25
26831632 GGTTACCAAT
*
26831642 TTCAGCTCGTAA-AGACTTACCGTTA
1 TTCAGCTCGGAAGAG-CTTACCGTTA
* *
26831667 TTCAGCTCGTATGAGCTTACCGTTA
1 TTCAGCTCGGAAGAGCTTACCGTTA
* * * *
26831692 TTTAGCTTGGAGGAGCTTACCATTA
1 TTCAGCTCGGAAGAGCTTACCGTTA
*
26831717 TTTAGCTCGGAAGAGCTTACCGTTA
1 TTCAGCTCGGAAGAGCTTACCGTTA
26831742 TTCAGCTC-GAAGTAGCTTAC
1 TTCAGCTCGGAAG-AGCTTAC
26831762 AGTGTCCCTA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
24 4 0.05
25 77 0.93
26 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (25 bp):
TTCAGCTCGGAAGAGCTTACCGTTA
Found at i:26835063 original size:43 final size:43
Alignment explanation
Indices: 26835012--26835157 Score: 147
Period size: 43 Copynumber: 3.4 Consensus size: 43
26835002 AGTGATACTG
*
26835012 GGAATCAGCACATAGCAACTCCTTTCACAATCAAAGATATGGT
1 GGAATCAGCACATAGCAACTCCTTTCACAATCAAAGATACGGT
* * * * * **
26835055 GGAATCAGCACTTAGCAAC-CATATTTATATTCAGTGATACGG-
1 GGAATCAGCACATAGCAACTCCT-TTCACAATCAAAGATACGGT
* *
26835097 GGAATCAGCA-ATAGCAA-TCCCTTTCACAATCAAATATACAGT
1 GGAATCAGCACATAGCAACT-CCTTTCACAATCAAAGATACGGT
*
26835139 GGAATCAGCACTTAGCAAC
1 GGAATCAGCACATAGCAAC
26835158 CACTTTTAGA
Statistics
Matches: 79, Mismatches: 18, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
41 18 0.23
42 24 0.30
43 37 0.47
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (43 bp):
GGAATCAGCACATAGCAACTCCTTTCACAATCAAAGATACGGT
Found at i:26835111 original size:84 final size:84
Alignment explanation
Indices: 26834967--26835203 Score: 284
Period size: 84 Copynumber: 2.8 Consensus size: 84
26834957 ATCCGTTACT
* * *
26834967 CGGTGGATTCAGCACTTAGCAACCACCTTAAATTCAGTGATACTGGGAATCAGCACATAGCAA-C
1 CGGTGGAATCAGCACTTAGCAACCAACTTAAATTCAGTGATACGGGGAATCAGCACATAGCAATC
26835031 TCCTTTCACAATCAAAGATA
66 -CCTTTCACAATCAAAGATA
* * *
26835051 TGGTGGAATCAGCACTTAGCAACCATATTTATATTCAGTGATACGGGGAATCAGCA-ATAGCAAT
1 CGGTGGAATCAGCACTTAGCAACCA-ACTTAAATTCAGTGATACGGGGAATCAGCACATAGCAAT
*
26835115 CCCTTTCACAATCAAATATA
65 CCCTTTCACAATCAAAGATA
* * * * * *
26835135 CAGTGGAATCAGCACTTAGCAACC-ACTTTTAGAA-TCAATAATTCGGGGAATCAACACTTAGCA
1 CGGTGGAATCAGCACTTAGCAACCAAC--TTA-AATTCAGTGATACGGGGAATCAGCACATAGCA
26835198 ATCCCT
63 ATCCCT
26835204 CGGGGAATCT
Statistics
Matches: 131, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
82 1 0.01
84 91 0.69
85 39 0.30
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (84 bp):
CGGTGGAATCAGCACTTAGCAACCAACTTAAATTCAGTGATACGGGGAATCAGCACATAGCAATC
CCTTTCACAATCAAAGATA
Found at i:26835171 original size:43 final size:42
Alignment explanation
Indices: 26834969--26835198 Score: 170
Period size: 42 Copynumber: 5.5 Consensus size: 42
26834959 CCGTTACTCG
* * *
26834969 GTGGATTCAGCACTTAGCAACCAC-CTTA-AATTCAGTGATAC
1 GTGGAATCAGCACTTAGCAACCACTTTTACAA-TCAATGATAC
* * * *
26835010 -TGGGAATCAGCACATAGCAACTC-CTTTCACAATCAAAGATATG
1 GT-GGAATCAGCACTTAGCAAC-CACTTTTACAATCAATGATA-C
* * *
26835053 GTGGAATCAGCACTTAGCAACCA-TATTTATATTCAGTGATAC
1 GTGGAATCAGCACTTAGCAACCACT-TTTACAATCAATGATAC
* * *
26835095 GGGGAATCAGCA-ATAGCAATCC-CTTTCACAATCAAAT-ATAC
1 GTGGAATCAGCACTTAGCAA-CCACTTTTACAATC-AATGATAC
* * *
26835136 AGTGGAATCAGCACTTAGCAACCACTTTTAGAATCAATAATTC
1 -GTGGAATCAGCACTTAGCAACCACTTTTACAATCAATGATAC
* *
26835179 GGGGAATCAACACTTAGCAA
1 GTGGAATCAGCACTTAGCAA
26835199 TCCCTCGGGG
Statistics
Matches: 147, Mismatches: 27, Indels: 29
0.72 0.13 0.14
Matches are distributed among these distances:
40 1 0.01
41 34 0.23
42 62 0.42
43 49 0.33
44 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (42 bp):
GTGGAATCAGCACTTAGCAACCACTTTTACAATCAATGATAC
Found at i:26841072 original size:25 final size:25
Alignment explanation
Indices: 26841036--26841122 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 25
26841026 TCATTCGTAT
* *
26841036 GAGCTTACCATTATTCAGTTTGAAG
1 GAGCTTATCATTATTCAGTCTGAAG
* *
26841061 GAGCTTATCATTATTCAACTCGGAA-
1 GAGCTTATCATTATTC-AGTCTGAAG
* *
26841086 GAGCTTATCGTTATTCAG-CTCAGAG
1 GAGCTTATCATTATTCAGTCTGA-AG
26841111 GAGCTTATCATT
1 GAGCTTATCATT
26841123 TATAGCTCGT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
23 2 0.04
24 2 0.04
25 41 0.82
26 5 0.10
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (25 bp):
GAGCTTATCATTATTCAGTCTGAAG
Found at i:26859558 original size:136 final size:135
Alignment explanation
Indices: 26859279--26859696 Score: 642
Period size: 136 Copynumber: 3.1 Consensus size: 135
26859269 TAGAAAAATG
* *
26859279 AATTATGTTCTTGCAAAAGAATATTAA-TTTCTGTCTTTTATATTTTGACCGAAATTAATTAATA
1 AATTATATTCTTTCAAAAGAATATTAATTTTCTGTCTTTTATATTTTGACCGAAATTAATTAATA
26859343 TAACTATTTATATTAATAAATTCGGTACAATATATACAATTAATATTTTGTATGAATCAAATTCA
66 TAACTATTTATATTAATAAATTCGGTA-AATATATACAATTAATATTTTGTATGAATCAAATTCA
26859408 TATATT
130 TATATT
* *
26859414 AATTATATTCTTTCAAAA-AATATTAATTTTCGTGTTTTTTATATTTTGACCGAAATTATTTAAT
1 AATTATATTCTTTCAAAAGAATATTAATTTTC-TGTCTTTTATATTTTGACCGAAATTAATTAAT
*
26859478 ATAACTATTTATATTAATAAATTCGGTAAACTATATACAATTAATATTTTGTACGAATCAAATTC
65 ATAACTATTTATATTAATAAATTCGGTAAA-TATATACAATTAATATTTTGTATGAATCAAATTC
26859543 ATATATT
129 ATATATT
* * ***
26859550 AATTATATTCTTTCCAAAAGAACATTAATTATCATGTCTTTTATATTTTGTTAGAAATTAATTAA
1 AATTATATTCTTT-CAAAAGAATATTAATTTTC-TGTCTTTTATATTTTGACCGAAATTAATTAA
* * * *
26859615 TATAATTGTTTATATTAATAAATACAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
64 TATAACTATTTATATTAATAAATTCGGT-AAATATATACAATTAATATTTTGTATGAATCAAATT
26859680 CATATATT
128 CATATATT
26859688 AATTATATT
1 AATTATATT
26859697 TATGTTCTCT
Statistics
Matches: 259, Mismatches: 18, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
134 8 0.03
135 22 0.08
136 111 0.43
137 5 0.02
138 110 0.42
139 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.45
Consensus pattern (135 bp):
AATTATATTCTTTCAAAAGAATATTAATTTTCTGTCTTTTATATTTTGACCGAAATTAATTAATA
TAACTATTTATATTAATAAATTCGGTAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
ATATT
Found at i:26859780 original size:17 final size:17
Alignment explanation
Indices: 26859758--26859790 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26859748 TCAACTATCA
26859758 AATTAAATTAATTCATC
1 AATTAAATTAATTCATC
*
26859775 AATTAATTTAATTCAT
1 AATTAAATTAATTCAT
26859791 GTGACAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTAAATTAATTCATC
Found at i:26862553 original size:40 final size:39
Alignment explanation
Indices: 26862469--26862653 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
26862459 TTGAATGATG
* * * *
26862469 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26862509 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
26862549 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26862588 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
26862629 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
26862654 AACAAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26862605 original size:79 final size:81
Alignment explanation
Indices: 26862469--26862653 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
26862459 TTGAATGATG
* *
26862469 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
26862533 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26862548 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26862610 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
26862628 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26862654 AACAAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:26862675 original size:79 final size:79
Alignment explanation
Indices: 26862470--26862686 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
26862460 TGAATGATGT
** * * * ** *
26862470 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-AAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCAAT
*
26862533 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
26862550 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
*
26862615 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* ** *
26862629 CCGGGCTATGTCCCGAAGGCATTTGAACAAG-TAGCTGTATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACAAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
26862687 TACGTGATTT
Statistics
Matches: 114, Mismatches: 18, Indels: 11
0.80 0.13 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.62
80 40 0.35
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACAAGTTACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:26870596 original size:40 final size:40
Alignment explanation
Indices: 26870405--26870589 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
26870395 TTGAATGATG
* * * *
26870405 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
26870445 TCCAGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26870485 TTCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26870524 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26870565 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26870590 AACGAGTAGC
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 32 0.27
40 76 0.65
41 9 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26872417 original size:46 final size:46
Alignment explanation
Indices: 26872340--26872825 Score: 705
Period size: 46 Copynumber: 10.6 Consensus size: 46
26872330 GTATCAAGTA
* * *
26872340 TTTCAAGCATAGGTCTTACTACATTTTATATCCTG-TG-CATTGGTA-C
1 TTTCAACCAT-GGTCTTAC-ACATTTCATATCATGTTGCCA-TGGTATC
* *
26872386 TTTCAACCATGGTACTTTACATATTTCATATCATGTTGCCGTGGTATC
1 TTTCAACCATGGT-C-TTACACATTTCATATCATGTTGCCATGGTATC
* * *
26872434 TTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCGTGGTATC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATC
* *
26872480 TTTCAACCATGGTCTTACACATTTCATATCGTGTTGCCGTGGTATC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATC
*
26872526 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTGTC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATC
* * *
26872572 TTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTGTC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATC
*
26872618 TTTCAACCACGGTCTTACACATTTCATATCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATC
26872664 TTTCAACCAT-GTCTTACACA-TTCATATCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATC
* * *
26872708 TTTCAACCATGGTC-TACACATTTTATATCCTGTTGCCATGGTGTC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATC
*
26872753 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTGTC
1 TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATC
*
26872799 TTTCAACCATGATCTTACACATTTCAT
1 TTTCAACCATGGTCTTACACATTTCAT
26872826 TTCAGAAAGC
Statistics
Matches: 406, Mismatches: 26, Indels: 16
0.91 0.06 0.04
Matches are distributed among these distances:
44 40 0.10
45 51 0.13
46 288 0.71
47 12 0.03
48 15 0.04
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATC
Found at i:26886778 original size:72 final size:72
Alignment explanation
Indices: 26886661--26886801 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
26886651 GATGAATCTA
* *
26886661 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATATTCAGGTTCTTGTG
1 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATACTCAGGTTCTTGTA
26886726 AGACCGG
66 AGACCGG
26886733 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATACTCAGGTTCTTGTA
1 TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATACTCAGGTTCTTGTA
26886798 AGAC
66 AGAC
26886802 AGGTCCAGAA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (72 bp):
TTTTCATAGGAAAGTAACGAAACAATCATACGGACAGTATGTTAAGAGATACTCAGGTTCTTGTA
AGACCGG
Found at i:26889084 original size:12 final size:12
Alignment explanation
Indices: 26889067--26889091 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26889057 CACGCCCATA
26889067 TGCTAGGTCGTG
1 TGCTAGGTCGTG
26889079 TGCTAGGTCGTG
1 TGCTAGGTCGTG
26889091 T
1 T
26889092 AACAACTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.40, T:0.36
Consensus pattern (12 bp):
TGCTAGGTCGTG
Found at i:26889976 original size:15 final size:16
Alignment explanation
Indices: 26889947--26889976 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26889937 CAAACATGCT
26889947 TTAACACATTATCAAA
1 TTAACACATTATCAAA
26889963 TTAACACA-TATCAA
1 TTAACACATTATCAA
26889977 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:26893226 original size:325 final size:325
Alignment explanation
Indices: 26892636--26893289 Score: 1227
Period size: 325 Copynumber: 2.0 Consensus size: 325
26892626 CAAATTCTCT
26892636 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
1 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
* *
26892701 CTTTAACTTAATACACCCCAGTCCCTATGTTTGACATCCTAGCAGATGACCCCGTCTTTAATGTC
66 CTTTAACTTAATACACCCCAGTCCCCATGTTTAACATCCTAGCAGATGACCCCGTCTTTAATGTC
*
26892766 CCATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
131 CCATCGGACTTCCCATTTTTATCATCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
* *
26892831 TGAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATCACGGTAGAC
196 TGAGTTGCCATATCCCAAATATGGTTTTACACATTATATTTCCCATGTTTACTATCACGGTAGAC
26892896 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
261 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
26892961 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
1 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
26893026 CTTTAACTTAATACACCCCAGTCCCCATGTTTAACATCCTAGCAGATGACCCCGTCTTTAATGTC
66 CTTTAACTTAATACACCCCAGTCCCCATGTTTAACATCCTAGCAGATGACCCCGTCTTTAATGTC
* * *
26893091 CCATCGGACTTTCCATTTTTATCATCTTGAAAGGCTATCTATTTTTAACATCCCATTAGACTACT
131 CCATCGGACTTCCCATTTTTATCATCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
26893156 TGAGTTGCCATATCCCAAATATGGTTTTACACATTATATTTCCCATGTTTACTATCACGGTAGAC
196 TGAGTTGCCATATCCCAAATATGGTTTTACACATTATATTTCCCATGTTTACTATCACGGTAGAC
*
26893221 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATTTCATGACGTC
261 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
26893286 TTTC
1 TTTC
26893290 AGCTATGGTT
Statistics
Matches: 320, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
325 320 1.00
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (325 bp):
TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
CTTTAACTTAATACACCCCAGTCCCCATGTTTAACATCCTAGCAGATGACCCCGTCTTTAATGTC
CCATCGGACTTCCCATTTTTATCATCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTAAT
TGAGTTGCCATATCCCAAATATGGTTTTACACATTATATTTCCCATGTTTACTATCACGGTAGAC
TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
Found at i:26893333 original size:45 final size:45
Alignment explanation
Indices: 26893284--26893397 Score: 156
Period size: 45 Copynumber: 2.5 Consensus size: 45
26893274 TTTCATGACG
* * * **
26893284 TCTTTCAGCTATGGTTTTACTCATTTATATCATGACGTTGTAGCA
1 TCTTTCAACTATGGTCTTACTCATTTATAGCATGACGTCATAGCA
* * *
26893329 TCTTTCAACTATGGTCTTACTCATTTATAGCGTGATGTCATAGCG
1 TCTTTCAACTATGGTCTTACTCATTTATAGCATGACGTCATAGCA
26893374 TCTTTCAACTATGGTCTTACTCAT
1 TCTTTCAACTATGGTCTTACTCAT
26893398 CTGTAGGCAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (45 bp):
TCTTTCAACTATGGTCTTACTCATTTATAGCATGACGTCATAGCA
Found at i:26898564 original size:13 final size:14
Alignment explanation
Indices: 26898536--26898565 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26898526 GTTAAATTGG
26898536 AAAGATGATAAAAT
1 AAAGATGATAAAAT
26898550 AAAGATGAT-AAAT
1 AAAGATGATAAAAT
26898563 AAA
1 AAA
26898566 TTAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (14 bp):
AAAGATGATAAAAT
Found at i:26899470 original size:25 final size:25
Alignment explanation
Indices: 26899436--26899648 Score: 175
Period size: 25 Copynumber: 8.6 Consensus size: 25
26899426 CACACCACAA
* *
26899436 CTCTTATGAGCGTCCCGATATTTGG
1 CTCTCATGAGCTTCCCGATATTTGG
*
26899461 CTCTCATGAGCTTCCCGTTATTTGG
1 CTCTCATGAGCTTCCCGATATTTGG
* * *
26899486 CTCCCACGAGCTTCCCGATAATTGG
1 CTCTCATGAGCTTCCCGATATTTGG
* * * *
26899511 CTTTCATGAGCTTTCTGAT-TAATGG
1 CTCTCATGAGCTTCCCGATAT-TTGG
** *
26899536 CTCTCCGGAGCTTTCCGATA-TTGG
1 CTCTCATGAGCTTCCCGATATTTGG
*
26899560 CTCAT-ATGAGCTTCCCGATATTTGA
1 CTC-TCATGAGCTTCCCGATATTTGG
* *
26899585 CTCTCTTGAGCTTCTC-AT-TTATGG
1 CTCTCATGAGCTTCCCGATATT-TGG
* * **
26899609 CTCTTATGAGCTTCCCGTTACATGG
1 CTCTCATGAGCTTCCCGATATTTGG
*
26899634 CTCACATGAGCTTCC
1 CTCTCATGAGCTTCC
26899649 TATTATATGG
Statistics
Matches: 146, Mismatches: 34, Indels: 16
0.74 0.17 0.08
Matches are distributed among these distances:
23 2 0.01
24 36 0.25
25 108 0.74
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (25 bp):
CTCTCATGAGCTTCCCGATATTTGG
Found at i:26899579 original size:74 final size:74
Alignment explanation
Indices: 26899458--26899648 Score: 195
Period size: 74 Copynumber: 2.6 Consensus size: 74
26899448 TCCCGATATT
* * ** * * * *
26899458 TGGCTCTCATGAGCTTCCCGTTATTTGGCTCCCACGAGCTTCCCGATAATTGGCTTTCATGAGCT
1 TGGCTCTCAGGAGCTTCCCGATACATGGCTCACATGAGCTTCCCGATAATTGACTCTCATGAGC-
*
26899523 TTCTGATTAA
65 TTCTCATTAA
* * * * * *
26899533 TGGCTCTCCGGAGCTTTCCGATA-TTGGCTCATATGAGCTTCCCGATATTTGACTCTCTTGAGCT
1 TGGCTCTCAGGAGCTTCCCGATACATGGCTCACATGAGCTTCCCGATAATTGACTCTCATGAGCT
*
26899597 TCTCATTTA
66 TCTCATTAA
* * *
26899606 TGGCTCTTATGAGCTTCCCGTTACATGGCTCACATGAGCTTCC
1 TGGCTCTCAGGAGCTTCCCGATACATGGCTCACATGAGCTTCC
26899649 TATTATATGG
Statistics
Matches: 95, Mismatches: 20, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
73 26 0.27
74 50 0.53
75 19 0.20
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (74 bp):
TGGCTCTCAGGAGCTTCCCGATACATGGCTCACATGAGCTTCCCGATAATTGACTCTCATGAGCT
TCTCATTAA
Found at i:26899589 original size:49 final size:50
Alignment explanation
Indices: 26899450--26899625 Score: 143
Period size: 49 Copynumber: 3.6 Consensus size: 50
26899440 TATGAGCGTC
* *
26899450 CCGATATTTGGCTC-TCATGAGCTTCCCGTTATTTGGCTC-CCACGAGCTTC
1 CCGATA-TTGGCTCTTCATGAGCTTCCCGATATTTGGCTCTCC-CGAGCTTT
* * * *
26899500 CCGATAATTGGCT-TTCATGAGCTTTCTGAT-TAATGGCTCTCCGGAGCTTT
1 CCGAT-ATTGGCTCTTCATGAGCTTCCCGATAT-TTGGCTCTCCCGAGCTTT
* * **
26899550 CCGATATTGGCTCAT-ATGAGCTTCCCGATATTTGACTCTCTTGAGC-TT
1 CCGATATTGGCTCTTCATGAGCTTCCCGATATTTGGCTCTCCCGAGCTTT
*
26899598 CTC-ATTTATGGCTCTT-ATGAGCTTCCCG
1 C-CGATAT-TGGCTCTTCATGAGCTTCCCG
26899626 TTACATGGCT
Statistics
Matches: 103, Mismatches: 15, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
48 6 0.06
49 51 0.50
50 43 0.42
51 3 0.03
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.37
Consensus pattern (50 bp):
CCGATATTGGCTCTTCATGAGCTTCCCGATATTTGGCTCTCCCGAGCTTT
Found at i:26899644 original size:49 final size:50
Alignment explanation
Indices: 26899557--26899682 Score: 132
Period size: 49 Copynumber: 2.5 Consensus size: 50
26899547 TTTCCGATAT
* ** * *
26899557 TGGCTCATATGAGCTTCCCGATATTTGACTCTCTTGAGCTT-CTCATT-TA
1 TGGCTCATATGAGCTTCCCGTTACATGACTCACATGAGCTTCCT-ATTATA
* *
26899606 TGGCTCTTATGAGCTTCCCGTTACATGGCTCACATGAGCTTCCTATTATA
1 TGGCTCATATGAGCTTCCCGTTACATGACTCACATGAGCTTCCTATTATA
* *
26899656 TGGCTCGA-AAGAGCTTCCTGTTACATG
1 TGGCTC-ATATGAGCTTCCCGTTACATG
26899683 CTTGTATGAG
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
49 37 0.58
50 27 0.42
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.37
Consensus pattern (50 bp):
TGGCTCATATGAGCTTCCCGTTACATGACTCACATGAGCTTCCTATTATA
Found at i:26901019 original size:20 final size:21
Alignment explanation
Indices: 26900981--26901020 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
26900971 GATATGAAAT
26900981 TTTTGGTATATGATCTATAAA
1 TTTTGGTATATGATCTATAAA
*
26901002 TTTTGGTA-ATGCTCTATAA
1 TTTTGGTATATGATCTATAA
26901021 CCCTGTTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.47
Consensus pattern (21 bp):
TTTTGGTATATGATCTATAAA
Found at i:26914857 original size:47 final size:47
Alignment explanation
Indices: 26914803--26914896 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
26914793 AATTAAATTA
*
26914803 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATATAT
1 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTAATGCATATATATAT
26914850 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTAATGCATATATATAT
1 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTAATGCATATATATAT
26914897 TAGTCATGCG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.43
Consensus pattern (47 bp):
ACCATTATTAGCAGGTTTAGTTTCATTTAAGTAATGCATATATATAT
Found at i:26918070 original size:30 final size:30
Alignment explanation
Indices: 26918034--26918094 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
26918024 TAGAATTTTC
26918034 AAAATTATCGAAACATGAAGATGATAACAT
1 AAAATTATCGAAACATGAAGATGATAACAT
*
26918064 AAAATTATCGGAACATGAAGATGATAACAT
1 AAAATTATCGAAACATGAAGATGATAACAT
26918094 A
1 A
26918095 CTTAACTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.52, C:0.10, G:0.15, T:0.23
Consensus pattern (30 bp):
AAAATTATCGAAACATGAAGATGATAACAT
Found at i:26920216 original size:49 final size:50
Alignment explanation
Indices: 26920144--26920522 Score: 233
Period size: 50 Copynumber: 7.5 Consensus size: 50
26920134 CAAAGCTATG
* * * *
26920144 TCCCAGACATAGTCTTACATGAGATGTT-TCTTGTA-TTGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGAGA-GTTCTCATATAGGTGCCAATGCCATA
* * *
26920193 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
** * ** * * * *
26920243 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
* * ** * * ** *
26920293 TCCCAGACATTGTCTTACATGGGACCTCTCATCTCGGTGCCAACACCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
* * ** * * * *
26920343 TACCAGACATGGTCTTACATGGGACCTCTTATCTCA-GTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATAT-AGGTGCCAATGCCATA
* * ** * * * *
26920393 TCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
* *** ** *
26920443 TCCCATACATGGTCTTACATGAGACCCCTCATAATCTCAATAATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCAT-A--T--A-GGTGCCAATGCCATA
26920499 TCCCAGACATGGTCTTACATGAGA
1 TCCCAGACATGGTCTTACATGAGA
26920523 TCTCTTTACC
Statistics
Matches: 280, Mismatches: 40, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
48 3 0.01
49 27 0.10
50 214 0.76
53 1 0.00
56 35 0.12
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
Found at i:26920248 original size:50 final size:50
Alignment explanation
Indices: 26920180--26920519 Score: 385
Period size: 50 Copynumber: 6.7 Consensus size: 50
26920170 TTTCTTGTAT
* * * * ** *
26920180 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * ** *
26920230 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* *
26920280 TGCCAACGCCATGTCCCAGACATTGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * *
26920330 TGCCAACACCATGTACCAGACATGGTCTTACATGGGACCTCTTATCTCA-G
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AGG
* *
26920380 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * * **
26920430 TGCCAACGCCATGTCCCATACATGGTCTTACATGAGACCCCTCATAATCTCAATAA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA--CCTC-TCATCT--A-GG
*
26920486 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG
26920520 AGATCTCTTT
Statistics
Matches: 248, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
50 207 0.83
52 4 0.02
53 5 0.02
56 32 0.13
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
Found at i:26924459 original size:10 final size:10
Alignment explanation
Indices: 26924444--26924476 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
26924434 CCCTAAACTC
26924444 ATACATCCTT
1 ATACATCCTT
*
26924454 ATACATCCTC
1 ATACATCCTT
26924464 ATACATCCTT
1 ATACATCCTT
26924474 ATA
1 ATA
26924477 AACTGCCACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (10 bp):
ATACATCCTT
Found at i:26924583 original size:43 final size:42
Alignment explanation
Indices: 26924476--26924605 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 42
26924466 ACATCCTTAT
* *
26924476 AAACTGCCACTGGGCTGTGGATGCACAATATATTTGCT-GATAA
1 AAACTGCCACTGGGCTGTGGGTGCA-AAAATATTTG-TAGATAA
* ** * * *
26924519 AAATTGCCACTAAGTTATGGGTGCATAACATATTTGTAGATAA
1 AAACTGCCACTGGGCTGTGGGTGCA-AAAATATTTGTAGATAA
26924562 AAACTGCCACTGGGCTGTGGGTGCAAATAATATTTGTAGATAA
1 AAACTGCCACTGGGCTGTGGGTGCAAA-AATATTTGTAGATAA
26924605 A
1 A
26924606 CTGCCATTGG
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 3 0.04
43 68 0.96
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (42 bp):
AAACTGCCACTGGGCTGTGGGTGCAAAAATATTTGTAGATAA
Found at i:26932173 original size:27 final size:27
Alignment explanation
Indices: 26932134--26932311 Score: 209
Period size: 27 Copynumber: 6.6 Consensus size: 27
26932124 ATATTGAGTC
* * *
26932134 CGCACACTCAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
26932161 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26932188 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* * *
26932216 CGCACACTTAGTG-TCGCATGGTCAATT
1 CGCACACTTAGTGCT-ACATAGTCAAAT
**
26932243 CGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAGTCAAAT
*
26932270 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26932297 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26932312 GTACAATTTA
Statistics
Matches: 133, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
25 4 0.03
27 102 0.77
28 22 0.17
29 5 0.04
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26932275 original size:82 final size:80
Alignment explanation
Indices: 26932155--26932309 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 80
26932145 TGCTACATAA
*
26932155 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACAT-ATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26932220 CACTTAGTGTCGCATGG
64 CACTTAGTGTCGCATGG
* **
26932237 TCAATTCGCACACTTAGTGCATCACAT-TCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGC-T-ACATATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26932301 CACTTAGTG
64 CACTTAGTG
26932310 CTGTACAATT
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
81 14 0.21
82 48 0.72
83 1 0.01
84 4 0.06
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACA
CTTAGTGTCGCATGG
Found at i:26940497 original size:29 final size:29
Alignment explanation
Indices: 26940454--26940750 Score: 396
Period size: 29 Copynumber: 10.2 Consensus size: 29
26940444 GTATTGATGC
*
26940454 CCATCGAATATGAAAAGGGATGGTTTTGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* *
26940483 ACATCGAATATGAAAAGGGATGGTTTTGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* **
26940512 CCATTGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* * *
26940541 CCATCGAATATGAAAAAAGGATGATTTTGA
1 CCATCGAATATG-AAAAGGGATGGTTTCGA
* **
26940571 CCATTGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
26940600 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
** **
26940629 CCATTAAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
*
26940658 CCATCGAATTTGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
**
26940687 CCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* *
26940716 CCACCGAATATGAAAAGGGATAGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
26940745 CCATCG
1 CCATCG
26940751 TTTAGCACAC
Statistics
Matches: 229, Mismatches: 38, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
29 206 0.90
30 23 0.10
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.23
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTTTCGA
Found at i:26940549 original size:58 final size:58
Alignment explanation
Indices: 26940454--26940748 Score: 446
Period size: 58 Copynumber: 5.1 Consensus size: 58
26940444 GTATTGATGC
* *** * *
26940454 CCATCGAATATGAAAAGGGATGGTTTTGAACATCGAATATGAAAAGGGATGGTTTTGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
* * *
26940512 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAAGGATGATTTTGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATG-AAAAGGGATGGTTTCGA
26940571 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
* *
26940629 CCATTAAATATGAAAAGGGATGGTGGCGACCATCGAATTTGAAAAGGGATGGTTTCGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
* * * *
26940687 CCATCGAATATGAAAAGGGATGGTGACGACCACCGAATATGAAAAGGGATAGTTTCGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
26940745 CCAT
1 CCAT
26940749 CGTTTAGCAC
Statistics
Matches: 218, Mismatches: 18, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
58 162 0.74
59 56 0.26
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.23
Consensus pattern (58 bp):
CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
Found at i:26952802 original size:27 final size:27
Alignment explanation
Indices: 26952772--26952948 Score: 169
Period size: 27 Copynumber: 6.5 Consensus size: 27
26952762 AAATTGTACA
26952772 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * ** * *
26952799 GCACTAACTGTGCAAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
26952826 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
26952853 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* * *
26952881 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTT
*
26952908 GCACTAAGTGTGCGAGTTGA-T-TGTAT
1 GCACTAAGTGTGCGATTTGACTATGT-T
*
26952934 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
26952949 GACTCAATAT
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
25 2 0.02
26 1 0.01
27 98 0.79
28 23 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:26952912 original size:82 final size:81
Alignment explanation
Indices: 26952772--26952927 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26952762 AAATTGTACA
* *
26952772 GCACTAAGTGTGCGATTTGACTATGTTGCACTAACTGTGCAAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAACTGTGCAAAATGAATACGATGCACTAAGTGT
26952837 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* * ** *
26952853 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAACTGTGCAAAATGAATACGAT-GCACTAAGT
*
26952917 GTGCGAGTTGA
64 GTGCGAATTGA
26952928 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAACTGTGCAAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26952939 original size:82 final size:81
Alignment explanation
Indices: 26952764--26952948 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
26952754 GCGGGATTAA
* *
26952764 ATTGTACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAACTGTGCAAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAACTGTGCAAAATGAATACGATGCA
26952829 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * * * ** *
26952845 ACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAG
1 ATTGTACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAACTGTGCAAAATGAATACGAT-G
*
26952909 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
26952927 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
26952949 GACTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 19 0.23
82 63 0.77
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAACTGTGCAAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:26957091 original size:101 final size:102
Alignment explanation
Indices: 26956965--26957149 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 102
26956955 AAAGTGATGG
*
26956965 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAATGAT-A-GGTCCCATCTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAATGATAATGGTCACATCTGTAGT
*
26957028 ACTATCTGCAGGCTACTATGCATACCGGATAGTTTCGA
65 ACTATCTGCAGGATACTATGCATACCGGATAGTTTCGA
* * * *
26957066 TCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTGTCGAATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGATAATGGTCACATCTGTAGTA
* *
26957131 CTATGTGTAGGATACTATG
66 CTATCTGCAGGATACTATG
26957150 TGAACCGAAC
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 6 0.08
101 38 0.51
102 30 0.41
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGATAATGGTCACATCTGTAGTA
CTATCTGCAGGATACTATGCATACCGGATAGTTTCGA
Found at i:26957126 original size:51 final size:50
Alignment explanation
Indices: 26956961--26957147 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 50
26956951 AGTGAAAGTG
* *
26956961 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAATGGT
* * * * ** * * *
26957012 A-GGTCCCATCTGTAGTACTATCTGCAGGCTACTATGCATACCGGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGT
* * * * *
26957061 TTCGATCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTGTCGAATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGT
* *
26957112 AATGGTCACATGTGTAGTACTATGTGTAGGATACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
26957148 TGTGAACCGA
Statistics
Matches: 102, Mismatches: 31, Indels: 6
0.73 0.22 0.04
Matches are distributed among these distances:
49 4 0.04
50 33 0.32
51 64 0.63
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGT
Found at i:26957225 original size:45 final size:45
Alignment explanation
Indices: 26957153--26957247 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
26957143 TACTATGTGA
** *
26957153 ACCGAACATCATTGATTGGTAAAGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
*
26957198 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
26957243 ACCGA
1 ACCGA
26957248 GTATCTGTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
Found at i:26963067 original size:45 final size:45
Alignment explanation
Indices: 26963016--26963110 Score: 163
Period size: 45 Copynumber: 2.1 Consensus size: 45
26963006 CTACTACTGA
* *
26963016 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
*
26963061 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
26963106 ACCGA
1 ACCGA
26963111 GTATCTGTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
Found at i:26967299 original size:23 final size:23
Alignment explanation
Indices: 26967269--26967323 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
26967259 GACATCGTAG
26967269 ATGGCTTGAGCTATTGAAAGACT
1 ATGGCTTGAGCTATTGAAAGACT
26967292 ATGGCTTGAGCTATTGAAAGACT
1 ATGGCTTGAGCTATTGAAAGACT
*
26967315 ATGACTTGA
1 ATGGCTTGA
26967324 TCGATGATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (23 bp):
ATGGCTTGAGCTATTGAAAGACT
Found at i:26971202 original size:33 final size:33
Alignment explanation
Indices: 26971165--26971232 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
26971155 GAATACTTTC
26971165 TTCACTCGTTTATTTTACAAGT-TCTCTTTCCTT
1 TTCACTCGTTTATTTTAC-AGTCTCTCTTTCCTT
* * *
26971198 TTCACTCGTTTCTTTTTCAGTCTCTCTTTCTTT
1 TTCACTCGTTTATTTTACAGTCTCTCTTTCCTT
26971231 TT
1 TT
26971233 TCACGCTCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 3 0.10
33 28 0.90
ACGTcount: A:0.10, C:0.25, G:0.06, T:0.59
Consensus pattern (33 bp):
TTCACTCGTTTATTTTACAGTCTCTCTTTCCTT
Found at i:26971234 original size:19 final size:19
Alignment explanation
Indices: 26971206--26971253 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
26971196 TTTTCACTCG
26971206 TTTC-TTTTTCA-GTCTCTC
1 TTTCTTTTTTCACG-CTCTC
26971224 TTTCTTTTTTCACGCTCTC
1 TTTCTTTTTTCACGCTCTC
*
26971243 -TTCTATTTTCA
1 TTTCTTTTTTCA
26971254 AGAACTCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 14 0.52
19 12 0.44
20 1 0.04
ACGTcount: A:0.08, C:0.27, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTCTTTTTTCACGCTCTC
Found at i:26976199 original size:29 final size:29
Alignment explanation
Indices: 26976157--26976481 Score: 380
Period size: 29 Copynumber: 11.2 Consensus size: 29
26976147 ATATCGACGC
*
26976157 CCATCGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* *
26976186 CCATCGAATATGAAAATGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * * *
26976215 CCATGGAATATGAAAAGGGATAGTTTCCA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
26976244 CCATCAAATATGAAAAGGGTTGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
*
26976273 CCATCGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
26976302 CCATCGAATATGAAAAAGGATGGTTTCAA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * * * *
26976331 CCATGGAATATGGAAAGGGATAGTTTCCA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* *
26976360 CCATCAAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
26976389 CCATCGAATATGAAAAGGGATGCTTTCGG
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
26976418 CCATCTAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* *
26976447 CCATTGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
*
26976476 TCATCG
1 CCATCG
26976482 TTTAGCACAC
Statistics
Matches: 245, Mismatches: 51, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 245 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.22
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGTCGA
Found at i:26976361 original size:116 final size:116
Alignment explanation
Indices: 26976152--26976473 Score: 509
Period size: 116 Copynumber: 2.8 Consensus size: 116
26976142 ACGACATATC
* * *
26976152 GACGCCCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAATGGATGGTTTCGACC
1 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
*
26976217 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGTTGGT
66 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
26976268 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
1 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
*
26976333 ATGGAATATGGAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
66 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
* ** * * * **
26976384 GACGACCATCGAATATGAAAAGGGATGCTTTCGGCCATCTAATATGAAAAGGGATGGTGACAACC
1 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
* *
26976449 ATTGAATATGAAAAGGGATGGTTTC
66 ATGGAATATGAAAAGGGATAGTTTC
26976474 GATCATCGTT
Statistics
Matches: 190, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
116 190 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.22
Consensus pattern (116 bp):
GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
Found at i:26982514 original size:43 final size:43
Alignment explanation
Indices: 26982450--26982704 Score: 217
Period size: 43 Copynumber: 6.0 Consensus size: 43
26982440 TGACCACTAT
* *
26982450 AAAATCTATGATACGG-GGAATCAGCACATAGCAACC-CCTTTC
1 AAAAT-TAAGATACGGTGGAATCAGCACTTAGCAACCACCTTTC
26982492 AAAATTAAGGATTA-GGTGGAATCAGCACTTAGCAACCACCTTT-
1 AAAATTAA-GA-TACGGTGGAATCAGCACTTAGCAACCACCTTTC
* * *
26982535 -ATATTCAGTGATACGG-GGAATCAGCACTTAGCAACC-CCATTC
1 AAAATT-A-AGATACGGTGGAATCAGCACTTAGCAACCACCTTTC
* * * * *
26982577 ACAATTAAAAATACGGTGGATTCAACACATAGCAACCACCTTT-
1 AAAATT-AAGATACGGTGGAATCAGCACTTAGCAACCACCTTTC
*
26982620 -ATATTCAACGATACGG-GGAATCAGCACTTAGCAACC-CCTTTC
1 AAAATT-AA-GATACGGTGGAATCAGCACTTAGCAACCACCTTTC
* * * *
26982662 ACAATTAAAAATACGGTGGGATCAGCAGTTAGCAACCACCTTT
1 AAAATT-AAGATACGGTGGAATCAGCACTTAGCAACCACCTTT
26982705 AGAGTCAATA
Statistics
Matches: 170, Mismatches: 27, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
41 11 0.06
42 69 0.41
43 76 0.45
44 14 0.08
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (43 bp):
AAAATTAAGATACGGTGGAATCAGCACTTAGCAACCACCTTTC
Found at i:26982562 original size:42 final size:41
Alignment explanation
Indices: 26982457--26982744 Score: 242
Period size: 42 Copynumber: 6.8 Consensus size: 41
26982447 TATAAAATCT
*
26982457 ATGATACGGGGAATCAGCACATAGCAACCCCTTTCAAAATT-A
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTT--AAATTCA
* *
26982499 AGGATTA-GGTGGAATCAGCACTTAGCAACCACCTTTATATTCA
1 ATGA-TACGG-GGAATCAGCACTTAGCAACC-CCTTTAAATTCA
* *
26982542 GTGATACGGGGAATCAGCACTTAGCAACCCCATTCACAATT-A
1 ATGATACGGGGAATCAGCACTTAGCAACCCC-TTTA-AATTCA
** * * * *
26982584 AAAATACGGTGGATTCAACACATAGCAACCACCTTTATATTCA
1 ATGATACGG-GGAATCAGCACTTAGCAACC-CCTTTAAATTCA
*
26982627 ACGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATT-A
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTT-A-AATTCA
** * * * *
26982669 AAAATACGGTGGGATCAGCAGTTAGCAACCACCTTTAGAGTCA
1 ATGATACGG-GGAATCAGCACTTAGCAACC-CCTTTAAATTCA
* * *
26982712 ATAATTCAGGGAATCAGCACTTAGCAACCCCTT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTT
26982745 AGGGAATCAG
Statistics
Matches: 199, Mismatches: 32, Indels: 31
0.76 0.12 0.12
Matches are distributed among these distances:
41 11 0.06
42 90 0.45
43 86 0.43
44 12 0.06
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (41 bp):
ATGATACGGGGAATCAGCACTTAGCAACCCCTTTAAATTCA
Found at i:26982567 original size:85 final size:85
Alignment explanation
Indices: 26982457--26982744 Score: 407
Period size: 85 Copynumber: 3.4 Consensus size: 85
26982447 TATAAAATCT
* * * *
26982457 ATGATACGGGGAATCAGCACATAGCAACCCCTTTCAAAATTAAGGATTA-GGTGGAATCAGCACT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAA-AAATACGGTGGAATCAGCACT
26982521 TAGCAACCACCTTTATATTCA
65 TAGCAACCACCTTTATATTCA
* * * * *
26982542 GTGATACGGGGAATCAGCACTTAGCAACCCCATTCACAATTAAAAATACGGTGGATTCAACACAT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGAATCAGCACTT
26982607 AGCAACCACCTTTATATTCA
66 AGCAACCACCTTTATATTCA
* * *
26982627 ACGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGGATCAGCAGTT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGAATCAGCACTT
* *
26982692 AGCAACCACCTTTAGAGTCA
66 AGCAACCACCTTTATATTCA
* * *
26982712 ATAATTCAGGGAATCAGCACTTAGCAACCCCTT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTT
26982745 AGGGAATCAG
Statistics
Matches: 179, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
84 3 0.02
85 176 0.98
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (85 bp):
ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGAATCAGCACTT
AGCAACCACCTTTATATTCA
Found at i:26982748 original size:26 final size:26
Alignment explanation
Indices: 26982719--26982770 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
26982709 TCAATAATTC
26982719 AGGGAATCAGCACTTAGCAACCCCTT
1 AGGGAATCAGCACTTAGCAACCCCTT
26982745 AGGGAATCAGCACTTAGCAACCCCTT
1 AGGGAATCAGCACTTAGCAACCCCTT
26982771 TTTATTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (26 bp):
AGGGAATCAGCACTTAGCAACCCCTT
Found at i:26990190 original size:42 final size:42
Alignment explanation
Indices: 26990066--26990290 Score: 181
Period size: 42 Copynumber: 5.3 Consensus size: 42
26990056 CGGTGGATTT
* * *
26990066 AGCACTTAGCAACCACC-ATAAATTCAGTGATATGGGAAATC
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
* * * * * **
26990107 AACACATAGAAATC-CCTTTCACAATTAAG-GATTTGGTGGAATC
1 AGCACTTAGCAACCACCTTT-A-AATTCAGTGATACGG-GGAATC
*
26990150 AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATC
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
* *** *
26990192 AGCACTTAGCAACC-CCATTCACAATT-AAAAATACGGTGGATTC
1 AGCACTTAGCAACCACC-TTTA-AATTCAGTGATACGG-GGAATC
* * **
26990235 AGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATC
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
26990277 AGCACTTAGCAACC
1 AGCACTTAGCAACC
26990291 CCTCAGGGAA
Statistics
Matches: 144, Mismatches: 29, Indels: 21
0.74 0.15 0.11
Matches are distributed among these distances:
40 2 0.01
41 13 0.09
42 63 0.44
43 59 0.41
44 7 0.05
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
Found at i:26990215 original size:85 final size:85
Alignment explanation
Indices: 26990056--26990292 Score: 305
Period size: 85 Copynumber: 2.8 Consensus size: 85
26990046 ATCCGTTACT
* * * * * * * * *
26990056 CGGTGGATTTAGCACTTAGCAACCACC-ATAAATTCAGTGATATGGGAAATCAACACATAGAAAT
1 CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAC
* ** *
26990120 CCCTTTCACAATTAAGGATT
66 CCCATTCACAATTAAAAATA
* *
26990140 TGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAC
1 CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAC
26990205 CCCATTCACAATTAAAAATA
66 CCCATTCACAATTAAAAATA
* **
26990225 CGGTGGATTCAGCACGTAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAAC
1 CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAC
26990290 CCC
66 CCC
26990293 TCAGGGAATC
Statistics
Matches: 132, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
84 24 0.18
85 108 0.82
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (85 bp):
CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAC
CCCATTCACAATTAAAAATA
Found at i:26990331 original size:25 final size:26
Alignment explanation
Indices: 26990270--26990344 Score: 143
Period size: 26 Copynumber: 2.9 Consensus size: 26
26990260 CAACGATACG
26990270 GGGAATCAGCACTTAGCAACCCCTCA
1 GGGAATCAGCACTTAGCAACCCCTCA
26990296 GGGAATCAGCACTTAGCAACCCCTCA
1 GGGAATCAGCACTTAGCAACCCCTCA
26990322 -GGAATCAGCACTTAGCAACCCCT
1 GGGAATCAGCACTTAGCAACCCCT
26990345 TTTTATTGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 23 0.47
26 26 0.53
ACGTcount: A:0.31, C:0.35, G:0.19, T:0.16
Consensus pattern (26 bp):
GGGAATCAGCACTTAGCAACCCCTCA
Found at i:26995224 original size:48 final size:47
Alignment explanation
Indices: 26995156--26995246 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 47
26995146 ATAACACTGT
**
26995156 TTGTGGACAAGCCATGACATAAATG-TCGATTAACGACCACATAACTCA
1 TTGTGGACAAGCCACCACATAAATGCT-GA-TAACGACCACATAACTCA
*
26995204 TTGTGGACAAGCCACCACATAATTGCTGATAACGACCACATAA
1 TTGTGGACAAGCCACCACATAAATGCTGATAACGACCACATAA
26995247 TCGTAGATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
47 14 0.36
48 24 0.62
49 1 0.03
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.22
Consensus pattern (47 bp):
TTGTGGACAAGCCACCACATAAATGCTGATAACGACCACATAACTCA
Found at i:26995255 original size:21 final size:22
Alignment explanation
Indices: 26995217--26995268 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
26995207 TGGACAAGCC
*
26995217 ACCACATAATTGCTGAT-AACG
1 ACCACATAATCGCTGATAAACG
*
26995238 ACCACATAATCG-TAGATAAACT
1 ACCACATAATCGCT-GATAAACG
26995260 ACCACATAA
1 ACCACATAA
26995269 CTTCCACCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 1 0.04
21 14 0.52
22 12 0.44
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.21
Consensus pattern (22 bp):
ACCACATAATCGCTGATAAACG
Found at i:26996176 original size:30 final size:30
Alignment explanation
Indices: 26996136--26996195 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
26996126 ATTTTTGGAC
26996136 TAAAGGTCATACCAAACAATAATATACAAA
1 TAAAGGTCATACCAAACAATAATATACAAA
* *
26996166 TAAAGTTCATACCAGACAATAATATACAAA
1 TAAAGGTCATACCAAACAATAATATACAAA
26996196 GAATGAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.22
Consensus pattern (30 bp):
TAAAGGTCATACCAAACAATAATATACAAA
Found at i:27003302 original size:22 final size:22
Alignment explanation
Indices: 27003276--27003320 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
27003266 AATGAAATCG
27003276 AGAAACAAAAAAAAGAAA-TGAA
1 AGAAA-AAAAAAAAGAAATTGAA
* *
27003298 AGAAAAAGAACAAGAAATTGAA
1 AGAAAAAAAAAAAGAAATTGAA
27003320 A
1 A
27003321 AAGAGAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.73, C:0.04, G:0.16, T:0.07
Consensus pattern (22 bp):
AGAAAAAAAAAAAGAAATTGAA
Found at i:27008090 original size:35 final size:35
Alignment explanation
Indices: 27008039--27008108 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
27008029 GTAATGAATA
*
27008039 CTTAATTTTCATAATTAGTTTATTCAGCTGACGAT
1 CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
*
27008074 CTTATTTTTCACAATTAGTTTATTCAGCTGACGAT
1 CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
27008109 AATCAATGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (35 bp):
CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
Found at i:27011513 original size:50 final size:50
Alignment explanation
Indices: 27011389--27011583 Score: 180
Period size: 50 Copynumber: 3.9 Consensus size: 50
27011379 GATAATAACA
* * * * *
27011389 TGCCAAAGCCATGTCCCAGACATGGTCTTAAATGGGATGTT-TCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGA-GTTCTCATATAGG
* * * *
27011438 TGCCAATGCCATATCTCAGATATGGTCTTAGATAGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGAGTTCTCATATAGG
* ** * *
27011488 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTA-GATGGGAGTTCTCATATAGG
* * * **
27011538 TGCCAACGCCATGTCTCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGAGTTCTCATA
27011584 ACCTTAATGA
Statistics
Matches: 119, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
48 3 0.03
49 37 0.31
50 77 0.65
51 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGAGTTCTCATATAGG
Found at i:27014570 original size:15 final size:15
Alignment explanation
Indices: 27014542--27014575 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
27014532 TCTATAGTCT
27014542 TCTATAGTTTTCACAA
1 TCTATAGTTTTCAC-A
27014558 TCTATAG-TTTCACA
1 TCTATAGTTTTCACA
27014572 TCTA
1 TCTA
27014576 AAGATCACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 6 0.33
16 7 0.39
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (15 bp):
TCTATAGTTTTCACA
Found at i:27018919 original size:18 final size:19
Alignment explanation
Indices: 27018896--27018932 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
27018886 GAAGAAAGAC
27018896 AGAAAAAGA-AATCAAAAA
1 AGAAAAAGAGAATCAAAAA
*
27018914 AGAAAAAGAGAATGAAAAA
1 AGAAAAAGAGAATCAAAAA
27018933 GAGCAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.05
Consensus pattern (19 bp):
AGAAAAAGAGAATCAAAAA
Found at i:27027021 original size:50 final size:50
Alignment explanation
Indices: 27026916--27027068 Score: 180
Period size: 50 Copynumber: 2.9 Consensus size: 50
27026906 GGGATGAGAC
* *
27026916 CCCATGTAAGACCATGTCTAGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACTGA-G--ATGAGAGGT
* *
27026972 CCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGT
* * * *
27027022 CCCTTGTAAGACTATGTCTGGGACATGGCATGGGCACTGATATGAGA
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGA
27027069 ACTCTCTGGG
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
50 50 0.57
52 1 0.01
53 3 0.03
56 33 0.38
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (50 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGT
Found at i:27027368 original size:20 final size:20
Alignment explanation
Indices: 27027343--27027381 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
27027333 TGAGTTATTT
27027343 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
27027363 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
27027382 GCAGAAGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:27028945 original size:25 final size:25
Alignment explanation
Indices: 27028916--27028980 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
27028906 TACTCCATAT
*
27028916 CTCGTGAGAGCATACTAATTTATAG
1 CTCGTGAGAGCATACTAATCTATAG
*
27028941 CTCGTGAGAGCATACTGATCTATAG
1 CTCGTGAGAGCATACTAATCTATAG
* *
27028966 CTCGAGTGAGCATAC
1 CTCGTGAGAGCATAC
27028981 CGATTCACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (25 bp):
CTCGTGAGAGCATACTAATCTATAG
Found at i:27050362 original size:21 final size:21
Alignment explanation
Indices: 27050332--27050385 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
27050322 CCCTCATCTT
*
27050332 TTTTTTATTTT-TATTTCAAAA
1 TTTTTAATTTTATATTTC-AAA
27050353 TTTTTAATTTTTATATTTCAAA
1 TTTTTAA-TTTTATATTTCAAA
27050375 TTTTATAATTT
1 TTTT-TAATTT
27050386 AATTTTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.21
22 14 0.48
23 9 0.31
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTAATTTTATATTTCAAA
Found at i:27050369 original size:23 final size:22
Alignment explanation
Indices: 27050339--27050385 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
27050329 CTTTTTTTTA
27050339 TTTTTATTTCAAAATTTT-TAAT
1 TTTTTATTTC-AAATTTTATAAT
27050361 TTTTATATTTCAAATTTTATAAT
1 TTTT-TATTTCAAATTTTATAAT
27050384 TT
1 TT
27050386 AATTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTTATTTCAAATTTTATAAT
Found at i:27050386 original size:21 final size:21
Alignment explanation
Indices: 27050332--27050390 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 21
27050322 CCCTCATCTT
* *
27050332 TTTTTTATTTTTATTTCAAAA
1 TTTTTAATTTATATTTCAAAA
27050353 TTTTTAATTTTTATATTTC-AAA
1 TTTTTAA--TTTATATTTCAAAA
27050375 TTTTATAATTTA-ATTT
1 TTTT-TAATTTATATTT
27050391 TAATTATTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
20 4 0.12
21 10 0.30
22 7 0.21
23 12 0.36
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTAATTTATATTTCAAAA
Found at i:27052869 original size:50 final size:51
Alignment explanation
Indices: 27052802--27052978 Score: 164
Period size: 50 Copynumber: 3.5 Consensus size: 51
27052792 TTTGGAAAGT
* * *
27052802 AAGATTCGCCATCGTGGCTTTAATCT-TTTTAACTACAATGTCGGGGAAGC
1 AAGATTCACCATTGTGGCTTTAATCTCTTTTAACTGCAATGTCGGGGAAGC
* * * * * *
27052852 AAGATTCACCATTGTGGCTTTAATCTGC-TCT-ACTGCACTGGCTGAGAGAGT
1 AAGATTCACCATTGTGGCTTTAATCT-CTTTTAACTGCAATGTCGGGGA-AGC
* ** * *
27052903 GAGATTCGTCATTGTGACTTTAAT-TCTTTTAACTGCAATGTCGGGAAAGC
1 AAGATTCACCATTGTGGCTTTAATCTCTTTTAACTGCAATGTCGGGGAAGC
* *
27052953 AAGATCCACCGTTGTGGCTTTAATCT
1 AAGATTCACCATTGTGGCTTTAATCT
27052979 GCTTCACTGA
Statistics
Matches: 95, Mismatches: 26, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
49 1 0.01
50 58 0.61
51 36 0.38
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (51 bp):
AAGATTCACCATTGTGGCTTTAATCTCTTTTAACTGCAATGTCGGGGAAGC
Found at i:27053164 original size:44 final size:44
Alignment explanation
Indices: 27053116--27053580 Score: 177
Period size: 44 Copynumber: 10.1 Consensus size: 44
27053106 AATCCGCTCC
*
27053116 ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAGTCTGTTCT
1 ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAATCTGTTCT
* * *
27053160 ACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGTGATCTACCCT
1 ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAATC-----TG-T-T---CT
* * * * * * *
27053214 ACTGTAA-CTTC-AGAGAGATAAGATCATTTA-TTTTAATCCGCTCC
1 ACTGTAATC-TCAAG-GAGATAAGATTA-CTAGCTTCAATCTGTTCT
* * ** * *
27053258 ACTGTAATCTTAGGGAGATGGGATTACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAATCTGTTCT
* * * ** * *
27053302 GCTGTGATATCGGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCT
1 ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAATCTG-T----TCT
* * * * * * *
27053351 ACTCTACTATAACTTC-AGAGAGATAAGATCCT-TTA-TTTTAATCCGCTCC
1 ACTGTA--AT--C-TCAAG-GAGATAAGAT--TACTAGCTTCAATCTGTTCT
* * * * * *
27053400 ACTGCAATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCC
1 ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAATCTGTTCT
* * * * * *
27053444 GCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
1 ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAATCTGTTCT
* * * *
27053488 ACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCTGCTCT
1 ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAATCTGTTCT
* * * * * *
27053532 GCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
1 ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAATCTGTTCT
27053576 ACTGT
1 ACTGT
27053581 TGCTTAGGGA
Statistics
Matches: 315, Mismatches: 74, Indels: 64
0.70 0.16 0.14
Matches are distributed among these distances:
42 1 0.00
43 4 0.01
44 233 0.74
45 4 0.01
47 3 0.01
49 14 0.04
50 1 0.00
51 3 0.01
53 3 0.01
54 46 0.15
55 2 0.01
56 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (44 bp):
ACTGTAATCTCAAGGAGATAAGATTACTAGCTTCAATCTGTTCT
Found at i:27053236 original size:142 final size:142
Alignment explanation
Indices: 27053055--27053483 Score: 687
Period size: 142 Copynumber: 3.0 Consensus size: 142
27053045 GAGATAAGAC
* *
27053055 CTGATGCGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTTTATCTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* * * * **
27053120 TAATCTCAAGGAGATAAGATTACTAGCTTCAGTCTGTTCTACTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
27053185 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
27053197 CTGATGTGATCTACCCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* * * * *
27053262 TAATCTTAGGGAGATGGGATTACTAGCTTCAATCTGCTCCGCTGTGATATCGGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
27053327 TCTGGCTTCAAT
131 TCTGGCTTCAAT
*
27053339 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
27053404 CAATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
27053469 TCTGGCTTCAAT
131 TCTGGCTTCAAT
27053481 CTG
1 CTG
27053484 CTCCACTGTA
Statistics
Matches: 260, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
142 260 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (142 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTGGCTTCAAT
Found at i:27053519 original size:88 final size:88
Alignment explanation
Indices: 27053390--27053592 Score: 338
Period size: 88 Copynumber: 2.3 Consensus size: 88
27053380 CCTTTATTTT
* * *
27053390 AATCCGCTCCACTGCAATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCCGCTGTAATCTC
1 AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATATGCTCCGCTGTAATCTC
27053455 AGGGAGATAAGATTTCTGGCTTC
66 AGGGAGATAAGATTTCTGGCTTC
* *
27053478 AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTC
1 AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATATGCTCCGCTGTAATCTC
27053543 AGGGAGATAAGATTTCTGGCTTC
66 AGGGAGATAAGATTTCTGGCTTC
27053566 AATCTGCTCCACTGT--TGCTTAGGGAGA
1 AATCTGCTCCACTGTAAT-CTTAGGGAGA
27053593 CAAGATCTGT
Statistics
Matches: 109, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
86 1 0.01
87 10 0.09
88 98 0.90
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (88 bp):
AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATATGCTCCGCTGTAATCTC
AGGGAGATAAGATTTCTGGCTTC
Found at i:27088783 original size:20 final size:20
Alignment explanation
Indices: 27088746--27088784 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
27088736 TAGTATTTTG
**
27088746 TGTGGTGGTTAATTTGATGT
1 TGTGGTGGTTAAGATGATGT
*
27088766 TGTGTTGGTTAAGATGATG
1 TGTGGTGGTTAAGATGATG
27088785 GTAAGGAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.46
Consensus pattern (20 bp):
TGTGGTGGTTAAGATGATGT
Found at i:27099056 original size:15 final size:15
Alignment explanation
Indices: 27099023--27099057 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
27099013 TAACCTTTAT
* *
27099023 TTTATTATTATTACT
1 TTTATTATTATAACC
27099038 TTTATTATTATAACC
1 TTTATTATTATAACC
27099053 TTTAT
1 TTTAT
27099058 ACATTTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTATTATTATAACC
Found at i:27115797 original size:51 final size:51
Alignment explanation
Indices: 27115711--27115911 Score: 228
Period size: 51 Copynumber: 4.0 Consensus size: 51
27115701 ATTAATGATA
* * *
27115711 CCGGTTCACATAGTAGCCTGAACATAGTACTACACATGTGACCATCACTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
* * * * * *
27115762 CCGATACATGTAGTAGTCTGCACATAGTACTACACACGTGATCA-AAGCTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCA-CTAT
* * * *
27115813 CCGGTACGCATAGTATCCTGCACATAGTACTACACATGCGACCTATCA-T-T
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTAT
* *
27115863 CTGGTACACGTAGTAGCCTGCACATAGTACAACACATGTGACCATCACT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
27115912 TTCACTTTCA
Statistics
Matches: 121, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
49 4 0.03
50 40 0.33
51 75 0.62
52 1 0.01
53 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (51 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
Found at i:27115927 original size:101 final size:102
Alignment explanation
Indices: 27115711--27115906 Score: 261
Period size: 102 Copynumber: 1.9 Consensus size: 102
27115701 ATTAATGATA
* * *
27115711 CCGGTTCACATAGTAGCCTGAACATAGTACTACACATGTGACCATCACTATCCGATACATGTAGT
1 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGT
* * *
27115776 AGTCTGCACATAGTACTACACACGTGATCAAAGCTAT
66 AGCCTGCACATAGTACAACACACGTGACCAAAGCTAT
* * * * *
27115813 CCGGTACGCATAGTATCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAG
1 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAG
*
27115876 TAGCCTGCACATAGTACAACACATGTGACCA
65 TAGCCTGCACATAGTACAACACACGTGACCA
27115907 TCACTTTCAC
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
101 38 0.47
102 39 0.48
103 4 0.05
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (102 bp):
CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGT
AGCCTGCACATAGTACAACACACGTGACCAAAGCTAT
Found at i:27115938 original size:101 final size:102
Alignment explanation
Indices: 27115711--27115941 Score: 247
Period size: 101 Copynumber: 2.3 Consensus size: 102
27115701 ATTAATGATA
* *
27115711 CCGGTTCACATAGTAGCCTGA-ACATAGTACTACACATGTGACCATCACTATCCGATACATGTAG
1 CCGGTTCACATAGTAGCCT-ACACATAGTACTACACATGCGACCATCACTATCCGATACACGTAG
* * *
27115775 TAGTCTGCACATAGTACTACACACGTGATCAAAGCTAT
65 TAGCCTGCACATAGTACAACACACGTGACCAAAGCTAT
* * * * * *
27115813 CCGGTACGCATAGTATCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAG
1 CCGGTTCACATAGTAGCCTACACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAG
* * *
27115876 TAGCCTGCACATAGTACAACACATGTGACCATCA-CTTT
65 TAGCCTGCACATAGTACAACACACGTGACCA-AAGCTAT
* *
27115914 CAC-TTTCACATAGTGGCCTACACATAGT
1 C-CGGTTCACATAGTAGCCTACACATAGT
27115942 CCATGCCACA
Statistics
Matches: 105, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
101 61 0.58
102 40 0.38
103 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (102 bp):
CCGGTTCACATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGT
AGCCTGCACATAGTACAACACACGTGACCAAAGCTAT
Found at i:27122788 original size:12 final size:12
Alignment explanation
Indices: 27122763--27122801 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
27122753 ACTCGCTTCT
* *
27122763 TTACTTACTCAC
1 TTACTTGCTTAC
*
27122775 TTACTTGTTTAC
1 TTACTTGCTTAC
27122787 TTACTTGCTTAC
1 TTACTTGCTTAC
27122799 TTA
1 TTA
27122802 AATAAATCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:27123238 original size:50 final size:50
Alignment explanation
Indices: 27123070--27123239 Score: 254
Period size: 50 Copynumber: 3.4 Consensus size: 50
27123060 ATATCTGGGT
* *
27123070 ATGGTCTTACATGGGAGT-TCTCATATCGGTGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGA-TCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
*
27123120 ATGGTCTTACGA-GGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTAC-ATGGGATCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
* *
27123170 ATGGTCTTACATGGGATCTCTCATCTTGGTGCCAACGCCATGTCCCAGTC
1 ATGGTCTTACATGGGATCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
*
27123220 ATGGTCTTACATGAGATCTC
1 ATGGTCTTACATGGGATCTC
27123240 ATTCCCTTAA
Statistics
Matches: 110, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
49 1 0.01
50 108 0.98
51 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACATGGGATCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
Done.