Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 94 of 214
Found at i:27126513 original size:29 final size:29
Alignment explanation
Indices: 27126471--27126539 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
27126461 AATAAATGCC
* * *
27126471 TATTTTGGTAATTAATT-TTTTTCTTATCT
1 TATTTCGGTAATTAATTAATTTT-TTATAT
27126500 TATTTCGGTAATTAATTAATTTTTTATAT
1 TATTTCGGTAATTAATTAATTTTTTATAT
*
27126529 TATTTGGGTAA
1 TATTTCGGTAA
27126540 AAAAACCATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 31 0.89
30 4 0.11
ACGTcount: A:0.26, C:0.04, G:0.10, T:0.59
Consensus pattern (29 bp):
TATTTCGGTAATTAATTAATTTTTTATAT
Found at i:27126899 original size:10 final size:10
Alignment explanation
Indices: 27126884--27126919 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
27126874 TTTATATACT
27126884 TTTTTTTCAA
1 TTTTTTTCAA
27126894 TTTTTTAT-AA
1 TTTTTT-TCAA
27126904 TTTTTTTCAA
1 TTTTTTTCAA
27126914 TTTTTT
1 TTTTTT
27126920 GATATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 1 0.04
10 22 0.92
11 1 0.04
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTTTTTCAA
Found at i:27126907 original size:21 final size:20
Alignment explanation
Indices: 27126884--27126945 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
27126874 TTTATATACT
27126884 TTTTTTTCAATTTTTTATAA
1 TTTTTTTCAATTTTTTATAA
27126904 TTTTTTTCAATTTTTTGAT-A
1 TTTTTTTCAATTTTTT-ATAA
* * *
27126924 TTATTTT-AACTTTTTAAAA
1 TTTTTTTCAATTTTTTATAA
27126943 TTT
1 TTT
27126946 ATAAATATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 1 0.03
19 10 0.28
20 23 0.64
21 2 0.06
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTTTTCAATTTTTTATAA
Found at i:27126979 original size:22 final size:22
Alignment explanation
Indices: 27126943--27126995 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
27126933 CTTTTTAAAA
*
27126943 TTTATAAATATATATATTAGAA-T
1 TTTATAAA-AAATATATTA-AACT
*
27126966 TTTATAAAAAATATTTTAAACT
1 TTTATAAAAAATATATTAAACT
27126988 TTT-TAAAA
1 TTTATAAAA
27126996 CAAATTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 7 0.26
22 12 0.44
23 8 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
TTTATAAAAAATATATTAAACT
Found at i:27131225 original size:12 final size:12
Alignment explanation
Indices: 27131208--27131264 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 12
27131198 TCACTCTTAT
27131208 TTTCTTTTTCGA
1 TTTCTTTTTCGA
* **
27131220 TTTCTTGTTCTC
1 TTTCTTTTTCGA
* *
27131232 TTTCATTTTCGT
1 TTTCTTTTTCGA
* *
27131244 TTTCATTTTCAA
1 TTTCTTTTTCGA
27131256 TTTCTTTTT
1 TTTCTTTTT
27131265 GTTTTTCCTT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.09, C:0.18, G:0.05, T:0.68
Consensus pattern (12 bp):
TTTCTTTTTCGA
Found at i:27131270 original size:18 final size:18
Alignment explanation
Indices: 27131207--27131271 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
27131197 CTCACTCTTA
*
27131207 TTTTCTTTTTCGATTTCT
1 TTTTCTTTTTCAATTTCT
* * * *
27131225 TGTTCTCTTTCATTTTCG
1 TTTTCTTTTTCAATTTCT
*
27131243 TTTTCATTTTCAATTTCT
1 TTTTCTTTTTCAATTTCT
*
27131261 TTTTGTTTTTC
1 TTTTCTTTTTC
27131272 CTTTTCACAT
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.08, C:0.17, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTTCTTTTTCAATTTCT
Found at i:27132223 original size:18 final size:17
Alignment explanation
Indices: 27132188--27132241 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
27132178 AACACTTCAC
27132188 TTTTTT-TTCG-AA-TT
1 TTTTTTATTCGTAATTT
*
27132202 TTTTTTACTTCGTACTTT
1 TTTTTTA-TTCGTAATTT
*
27132220 TTTTTTATTCTTAATTT
1 TTTTTTATTCGTAATTT
27132237 TTTTT
1 TTTTT
27132242 CGTAATTTCC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 6 0.18
16 4 0.12
17 14 0.42
18 9 0.27
ACGTcount: A:0.13, C:0.09, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTTTTATTCGTAATTT
Found at i:27137692 original size:20 final size:20
Alignment explanation
Indices: 27137667--27137774 Score: 101
Period size: 20 Copynumber: 5.4 Consensus size: 20
27137657 GCTTGTACGA
*
27137667 GATTGCACTTTGGTGCCCCT
1 GATTGCACTTTGGTGCCTCT
* *
27137687 GATTGCACATTT-GTGTCTTT
1 GATTGCAC-TTTGGTGCCTCT
* *
27137707 GTTTGTACTTTGGTGCCTCT
1 GATTGCACTTTGGTGCCTCT
* *
27137727 AATTGCACTTTTGTGCCTCT
1 GATTGCACTTTGGTGCCTCT
* * * *
27137747 GTTTACACTTCGGTGCCTTT
1 GATTGCACTTTGGTGCCTCT
27137767 GATTGCAC
1 GATTGCAC
27137775 AATTGTGCCT
Statistics
Matches: 67, Mismatches: 19, Indels: 4
0.74 0.21 0.04
Matches are distributed among these distances:
19 3 0.04
20 61 0.91
21 3 0.04
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (20 bp):
GATTGCACTTTGGTGCCTCT
Found at i:27137732 original size:40 final size:40
Alignment explanation
Indices: 27137669--27137804 Score: 157
Period size: 40 Copynumber: 3.4 Consensus size: 40
27137659 TTGTACGAGA
* * *
27137669 TTGCACTTTGGTGCCCCTGATTGCACATTTGTGTCTTTGT
1 TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTTTGT
* * * * *
27137709 TTGTACTTTGGTGCCTCTAATTGCACTTTTGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTTTGT
* * *
27137749 TTACACTTCGGTGCCTTTGATTGCACAATTGTGCCTTT-T
1 TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTTTGT
27137788 TCTGCACTTCGGTGCCT
1 T-TGCACTTCGGTGCCT
27137805 TTATTACGCA
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.03
40 78 0.98
ACGTcount: A:0.11, C:0.24, G:0.21, T:0.44
Consensus pattern (40 bp):
TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTTTGT
Found at i:27149391 original size:87 final size:87
Alignment explanation
Indices: 27149227--27149406 Score: 247
Period size: 87 Copynumber: 2.1 Consensus size: 87
27149217 CACCCTTTAC
* * * *
27149227 TAAAGTCTATTTAACTCTCTCTAAAATATTCATATAAGGTTATTATTTATTTCTACAAAAATTAT
1 TAAA-TCTATTTAAATCTCTCTAAAATATTCATATAAGGTTATTATTTATTTATACAAAAAATAG
* *
27149292 ACTTAATTAGGAATTTAAGCATA
65 ACATAATGAGGAATTTAAGCATA
* *
27149315 TAAATCTATTTAAATCTCTGTACAAA-ATTCATATAAGGTTATTGTTTATTTATA-AAGAAAATA
1 TAAATCTATTTAAATCTCTCTA-AAATATTCATATAAGGTTATTATTTATTTATACAA-AAAATA
27149378 GACATAATGAGGAATTTAAGCATA
64 GACATAATGAGGAATTTAAGCATA
27149402 TAAAT
1 TAAAT
27149407 TTCAACCCAC
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
86 2 0.02
87 73 0.89
88 7 0.09
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (87 bp):
TAAATCTATTTAAATCTCTCTAAAATATTCATATAAGGTTATTATTTATTTATACAAAAAATAGA
CATAATGAGGAATTTAAGCATA
Found at i:27153282 original size:33 final size:32
Alignment explanation
Indices: 27153240--27153348 Score: 138
Period size: 33 Copynumber: 3.5 Consensus size: 32
27153230 CTTGGTGGAT
27153240 TCAGCACTTAGCAACCACCAGTGAGTCGGGGAA
1 TCAGCACTTAGCAACCACCA-TGAGTCGGGGAA
27153273 TCAGCACTTAGCAACC-CC-TG-G--GGGGAA
1 TCAGCACTTAGCAACCACCATGAGTCGGGGAA
* *
27153300 TCAGCACTTAGCAACCACCAATGATTCGGGAAA
1 TCAGCACTTAGCAACCACC-ATGAGTCGGGGAA
*
27153333 TAAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
27153349 CCTTATACAA
Statistics
Matches: 67, Mismatches: 3, Indels: 12
0.82 0.04 0.15
Matches are distributed among these distances:
27 22 0.33
28 2 0.03
29 1 0.01
30 4 0.06
32 2 0.03
33 36 0.54
ACGTcount: A:0.32, C:0.28, G:0.23, T:0.17
Consensus pattern (32 bp):
TCAGCACTTAGCAACCACCATGAGTCGGGGAA
Found at i:27153467 original size:76 final size:74
Alignment explanation
Indices: 27153296--27153502 Score: 251
Period size: 76 Copynumber: 2.8 Consensus size: 74
27153286 ACCCCTGGGG
* *
27153296 GGAATCAGCACTTAGCAACCACCAATGA-TTCGGGAAAT-AAGCACTTAGCAACCCCTTATACAA
1 GGAATCAGCACTTAGCAACCACCGATGATTTAGGG-AATCAA-CACTTAGCAACCCCTTATACAA
**
27153359 TCCGTTACAGT
64 TCCGAGACAGT
*
27153370 GGAATCAGCACTTACCAACCACCGATGATTTAGGGAATCAACACTTAGCAACCCCTT-T-CATAT
1 GGAATCAGCACTTAGCAACCACCGATGATTTAGGGAATCAACACTTAGCAACCCCTTATACA-AT
*
27153433 CTGAAGACACTGT
65 CCG-AGACA--GT
* * *
27153446 GGAATCAGCACTTAGAAACCACCGATGATTTGGGGAATCAGCACTTAGCAACCCCTT
1 GGAATCAGCACTTAGCAACCACCGATGATTTAGGGAATCAACACTTAGCAACCCCTT
27153503 GGGGGAATCA
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
72 2 0.02
73 5 0.04
74 48 0.41
75 7 0.06
76 55 0.47
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.22
Consensus pattern (74 bp):
GGAATCAGCACTTAGCAACCACCGATGATTTAGGGAATCAACACTTAGCAACCCCTTATACAATC
CGAGACAGT
Found at i:27159667 original size:40 final size:40
Alignment explanation
Indices: 27159598--27159750 Score: 182
Period size: 40 Copynumber: 3.8 Consensus size: 40
27159588 AAAATTATTC
* * * **
27159598 TGATTGCACATACGTACCCCTGTTCGTACTTCGGTACCCC
1 TGATTGCACATACTTGCCCCTGTTCGTACTTTGGTACCAA
* * * *
27159638 TGATTACACATACTTGCCCATGTTTGTACTTTGATACCAA
1 TGATTGCACATACTTGCCCCTGTTCGTACTTTGGTACCAA
*
27159678 TGATTGCATATA-TGTGCCCCTGTTCGTACTTTGGTACCAA
1 TGATTGCACATACT-TGCCCCTGTTCGTACTTTGGTACCAA
* *
27159718 TGATTGCACATACATGCCCCTGTTTGTACTTTG
1 TGATTGCACATACTTGCCCCTGTTCGTACTTTG
27159751 ATTCCCATTA
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 93 0.99
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (40 bp):
TGATTGCACATACTTGCCCCTGTTCGTACTTTGGTACCAA
Found at i:27159736 original size:80 final size:80
Alignment explanation
Indices: 27159598--27159752 Score: 229
Period size: 80 Copynumber: 1.9 Consensus size: 80
27159588 AAAATTATTC
** *
27159598 TGATTGCACATACGTACCCCTGTTCGTACTTCGGTACCCCTGATTACACATACTTGCCCATGTTT
1 TGATTGCACATACGTACCCCTGTTCGTACTTCGGTACCAATGATTACACATACATGCCCATGTTT
27159663 GTACTTTGATACCAA
66 GTACTTTGATACCAA
* * * * * *
27159678 TGATTGCATATATGTGCCCCTGTTCGTACTTTGGTACCAATGATTGCACATACATGCCCCTGTTT
1 TGATTGCACATACGTACCCCTGTTCGTACTTCGGTACCAATGATTACACATACATGCCCATGTTT
27159743 GTACTTTGAT
66 GTACTTTGAT
27159753 TCCCATTAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (80 bp):
TGATTGCACATACGTACCCCTGTTCGTACTTCGGTACCAATGATTACACATACATGCCCATGTTT
GTACTTTGATACCAA
Found at i:27159776 original size:40 final size:40
Alignment explanation
Indices: 27159598--27159778 Score: 132
Period size: 40 Copynumber: 4.5 Consensus size: 40
27159588 AAAATTATTC
* * * * * * **
27159598 TGATTGCACATACGTACCCCTGTTCGTACTTCGGTACCCC
1 TGATTGCACTTTCGTGCCCCTGTTTGTACTTTGATACCAA
* * * * *
27159638 TGATTACACATACTTGCCCATGTTTGTACTTTGATACCAA
1 TGATTGCACTTTCGTGCCCCTGTTTGTACTTTGATACCAA
* *
27159678 TGATTGCA-TATAT-GTGCCCCTGTTCGTACTTTGGTACCAA
1 TGATTGCACT-T-TCGTGCCCCTGTTTGTACTTTGATACCAA
* * * * *
27159718 TGATTGCACATACATGCCCCTGTTTGTACTTTGATTCCCA
1 TGATTGCACTTTCGTGCCCCTGTTTGTACTTTGATACCAA
* *
27159758 TTAATGCACTTTCGTGCCCCT
1 TGATTGCACTTTCGTGCCCCT
27159779 CTTTATGCTC
Statistics
Matches: 109, Mismatches: 28, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (40 bp):
TGATTGCACTTTCGTGCCCCTGTTTGTACTTTGATACCAA
Found at i:27173374 original size:27 final size:27
Alignment explanation
Indices: 27173319--27173380 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
27173309 AAAGGTTGTT
* *
27173319 AAATGACCGAAATACCCCTGTAAGTTA
1 AAATGACTGAAATACCCCTGTAAGGTA
27173346 AAATGACTGAAATACCACC-G-AAGGGTA
1 AAATGACTGAAATACC-CCTGTAA-GGTA
27173373 AAATGACT
1 AAATGACT
27173381 ATTTTACCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.06
27 27 0.87
28 2 0.06
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.19
Consensus pattern (27 bp):
AAATGACTGAAATACCCCTGTAAGGTA
Found at i:27182277 original size:51 final size:51
Alignment explanation
Indices: 27182157--27182341 Score: 171
Period size: 51 Copynumber: 3.6 Consensus size: 51
27182147 AAAGTCATGG
* * * * *
27182157 TCACGTGTGTAGTACTATTTGCAGGCTAGTATGTGTACCGGAAT-G--ATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACC-GAATAGTAAT-GA
* *
27182207 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGTAAT-GA
** *** * * *
27182258 TCATGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATTGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGTAATGA
*
27182309 TCACATGTGTAGTACTATGCGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
27182342 TGAATTGATT
Statistics
Matches: 109, Mismatches: 23, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
49 4 0.04
50 35 0.32
51 69 0.63
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGTAATGA
Found at i:27189409 original size:136 final size:135
Alignment explanation
Indices: 27189166--27189410 Score: 294
Period size: 135 Copynumber: 1.8 Consensus size: 135
27189156 CGAGCTATTG
* * * *
27189166 GTCGAAACGTAGCTACATGGTGCTGCTCCACAAGTTGTCAAGTCTCCACAAAAATGCCAGAACTC
1 GTCGAAACGTAGCTACATGGTGCTACTCAACAAGCTGTCAAGTATCCACAAAAATGCCAGAACTC
* * * * **
27189231 AGCCAACGATAGGACATTCAAGACCACCACCTGAAACATGGTAACTTGGGTCTGCTTACACAAGC
66 AACCAACCATAGGACAGTCAAGACCACAACCCAAAACATGGTAACTTGGGTCTGCTTACACAAGC
27189296 TGTCA
131 TGTCA
* * * ***
27189301 GTCGAAATGTAGCTACATGGTGCTACTCAACAAGCTGTCGAGTATCCGCAACAAATGTTGGAACT
1 GTCGAAACGTAGCTACATGGTGCTACTCAACAAGCTGTCAAGTATCCACAA-AAATGCCAGAACT
* * *
27189366 GAACC-ACCATTAGGACAGTCAAGTCCAGAACCCAAAACATGGTAA
65 CAACCAACCA-TAGGACAGTCAAGACCACAACCCAAAACATGGTAA
27189411 ACCCTAGTGA
Statistics
Matches: 89, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
135 47 0.53
136 42 0.47
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.20
Consensus pattern (135 bp):
GTCGAAACGTAGCTACATGGTGCTACTCAACAAGCTGTCAAGTATCCACAAAAATGCCAGAACTC
AACCAACCATAGGACAGTCAAGACCACAACCCAAAACATGGTAACTTGGGTCTGCTTACACAAGC
TGTCA
Found at i:27196012 original size:16 final size:16
Alignment explanation
Indices: 27195993--27196027 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
27195983 TAGTAATTTT
27195993 AATGTT-AAATGACTAA
1 AATGTTAAAATGA-TAA
27196009 AATGTTAAAATGATAA
1 AATGTTAAAATGATAA
27196025 AAT
1 AAT
27196028 TACGAGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.31
Consensus pattern (16 bp):
AATGTTAAAATGATAA
Found at i:27198297 original size:45 final size:45
Alignment explanation
Indices: 27198248--27198336 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
27198238 AATTTGAGCT
* *
27198248 AAATTTTATTATTAATTAAATCGGGTTTAATTGTAAAATAAGGTA
1 AAATTTTATTATTAATTAAATCGGGTTTAATTATAAAACAAGGTA
*
27198293 AAATTTTATTATTAATTAAATTGGGTTTAATTATAAAACAAGGT
1 AAATTTTATTATTAATTAAATCGGGTTTAATTATAAAACAAGGT
27198337 GAAGTTTAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (45 bp):
AAATTTTATTATTAATTAAATCGGGTTTAATTATAAAACAAGGTA
Found at i:27211266 original size:21 final size:22
Alignment explanation
Indices: 27211231--27211272 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
27211221 CCGTATACAA
27211231 ATTTTTTTTCAAATTTCTTTTG
1 ATTTTTTTTCAAATTTCTTTTG
*
27211253 ATTTTTTTTC-AATTTTTTTT
1 ATTTTTTTTCAAATTTCTTTT
27211273 CAAATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (22 bp):
ATTTTTTTTCAAATTTCTTTTG
Found at i:27211269 original size:11 final size:12
Alignment explanation
Indices: 27211228--27211284 Score: 75
Period size: 12 Copynumber: 5.0 Consensus size: 12
27211218 AGACCGTATA
27211228 CAAATTTTTTTT
1 CAAATTTTTTTT
*
27211240 CAAATTTCTTTT
1 CAAATTTTTTTT
*
27211252 --GATTTTTTTT
1 CAAATTTTTTTT
27211262 C-AATTTTTTTT
1 CAAATTTTTTTT
27211273 CAAATTTTTTTT
1 CAAATTTTTTTT
27211285 TCACAAATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
10 8 0.21
11 10 0.26
12 21 0.54
ACGTcount: A:0.21, C:0.09, G:0.02, T:0.68
Consensus pattern (12 bp):
CAAATTTTTTTT
Found at i:27211294 original size:15 final size:13
Alignment explanation
Indices: 27211254--27211287 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
27211244 TTTCTTTTGA
27211254 TTTTTTTTC-AA-
1 TTTTTTTTCAAAT
27211265 TTTTTTTTCAAAT
1 TTTTTTTTCAAAT
27211278 TTTTTTTTCA
1 TTTTTTTTCA
27211288 CAAATTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 2 0.10
13 10 0.48
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTTTTCAAAT
Found at i:27211444 original size:19 final size:18
Alignment explanation
Indices: 27211422--27211459 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
27211412 ACGATGAAGT
*
27211422 TTCGTTCTTCTTGAGTCAA
1 TTCGTTCTACTTGA-TCAA
27211441 TTCGTTCTACTTGATCAA
1 TTCGTTCTACTTGATCAA
27211459 T
1 T
27211460 GAAGTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.47
Consensus pattern (18 bp):
TTCGTTCTACTTGATCAA
Found at i:27212508 original size:29 final size:29
Alignment explanation
Indices: 27212474--27212546 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
27212464 ATGTATTAGT
* *
27212474 TTAGGACATATTTAAAACACTTGAACTAA
1 TTAGGACATATTTAAAACACCTAAACTAA
*
27212503 TTAGGACATATTTAAAACTCCTAAACTAA
1 TTAGGACATATTTAAAACACCTAAACTAA
*
27212532 TTAGAACATATTTAA
1 TTAGGACATATTTAA
27212547 TAATATCTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (29 bp):
TTAGGACATATTTAAAACACCTAAACTAA
Found at i:27213028 original size:185 final size:184
Alignment explanation
Indices: 27212700--27213064 Score: 712
Period size: 185 Copynumber: 2.0 Consensus size: 184
27212690 AAAAATTAAA
*
27212700 CTTGAAGAGCTTTAAGTAGAGTGCATGGTTTGCTCATCTTGCTGGTCCATGAGCTTTCAAATAGA
1 CTTGAAGAGCTTTAAATAGAGTGCATGGTTTGCTCATCTTGCTGGTCCATGAGCTTTCAAATAGA
27212765 CCGGCCACGGATTCACCCCAAACCCGATCAACCAAGCTAAAATTGCGTCTTTAAACTTCTTTTCC
66 CCGGCCACGGATTCACCCCAAACCCGATCAACCAAGCTAAAATTGCGTCTTTAAACTTCTTTTCC
27212830 CTAGCTTGGGTAATAGGTCCTTTGGGCAGCTCGAGGGAGACATCGTTTGCTCAT
131 CTAGCTTGGGTAATAGGTCCTTTGGGCAGCTCGAGGGAGACATCGTTTGCTCAT
27212884 CTTGAAGAGCTTTCAAATAGAGTGCATGGTTTGCTCATCTTGCTGGTCCATGAGCTTTCAAATAG
1 CTTGAAGAGCTTT-AAATAGAGTGCATGGTTTGCTCATCTTGCTGGTCCATGAGCTTTCAAATAG
27212949 ACCGGCCACGGATTCACCCCAAACCCGATCAACCAAGCTAAAATTGCGTCTTTAAACTTCTTTTC
65 ACCGGCCACGGATTCACCCCAAACCCGATCAACCAAGCTAAAATTGCGTCTTTAAACTTCTTTTC
27213014 CCTAGCTTGGGTAATAGGTCCTTTGGGCAGCTCGAGGGAGACATCGTTTGC
130 CCTAGCTTGGGTAATAGGTCCTTTGGGCAGCTCGAGGGAGACATCGTTTGC
27213065 ACTTGAAAGC
Statistics
Matches: 179, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
184 13 0.07
185 166 0.93
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (184 bp):
CTTGAAGAGCTTTAAATAGAGTGCATGGTTTGCTCATCTTGCTGGTCCATGAGCTTTCAAATAGA
CCGGCCACGGATTCACCCCAAACCCGATCAACCAAGCTAAAATTGCGTCTTTAAACTTCTTTTCC
CTAGCTTGGGTAATAGGTCCTTTGGGCAGCTCGAGGGAGACATCGTTTGCTCAT
Found at i:27218785 original size:18 final size:17
Alignment explanation
Indices: 27218753--27218786 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
27218743 TGAAAATCAG
*
27218753 GCCAAATTGTTAAAGTA
1 GCCAAATTGTAAAAGTA
27218770 GCCAAATTTGTAAAAGT
1 GCCAAA-TTGTAAAAGT
27218787 TTTAATTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (17 bp):
GCCAAATTGTAAAAGTA
Found at i:27231574 original size:37 final size:37
Alignment explanation
Indices: 27231524--27231602 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27231514 TTATTACGAA
* * *
27231524 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27231561 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27231598 GTCTT
1 GTCTT
27231603 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27231790 original size:47 final size:47
Alignment explanation
Indices: 27231721--27232419 Score: 984
Period size: 47 Copynumber: 14.4 Consensus size: 47
27231711 CCTTTCGGGA
* *
27231721 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27231768 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27231815 CTTATGACACATATACACTTTCACATTCGTCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27231862 CTTATTACATATATACACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATAT----ACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27231913 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27231960 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27232007 CTTATTACATATATACATATACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27232058 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27232105 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27232152 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
27232203 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27232254 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27232305 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27232354 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27232401 CATATCACACATATACACT
1 CTTATCACATATATACACT
27232420 CTCTTGGCTG
Statistics
Matches: 605, Mismatches: 31, Indels: 32
0.91 0.05 0.05
Matches are distributed among these distances:
47 330 0.55
49 52 0.09
51 215 0.36
53 4 0.01
55 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:27231999 original size:145 final size:145
Alignment explanation
Indices: 27231736--27232419 Score: 1120
Period size: 145 Copynumber: 4.7 Consensus size: 145
27231726 CACATTTATG
27231736 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
* *
27231801 GTCGGCTATTAGGCCTTATGACACATATACACTTTCACATTCGTCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
27231866 TTACATATATACACA
131 TTACATATATACATA
27231881 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
27231946 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
27232011 TTACATATATACATA
131 TTACATATATACATA
* *
27232026 TACTTTCACATTCATCACATCAGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
27232091 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
27232156 TTACATATATACATA
131 TTACATATATACATA
* * *
27232171 TACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCA
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ACAT--ATACACTTTCACATTCA
* * * *
27232236 TCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATT
62 TCACGTCGGCTATTAGGCCTTATCAC--ACAT--ATACACTTTCACATTCATCACATCGGCTATT
*
27232301 AGGCCTTA-T-CACATATACATA
123 AGGCCTTATTACATATATACATA
* * *
27232322 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
* *
27232387 ATCGGCTATTAGGCCATATCACACATATACACT
66 GTCGGCTATTAGGCCTTATCACACATATACACT
27232420 CTCTTGGCTG
Statistics
Matches: 513, Mismatches: 18, Indels: 18
0.93 0.03 0.03
Matches are distributed among these distances:
143 7 0.01
145 326 0.64
147 44 0.09
149 45 0.09
151 52 0.10
152 1 0.00
153 38 0.07
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (145 bp):
CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
TTACATATATACATA
Found at i:27235658 original size:40 final size:40
Alignment explanation
Indices: 27235613--27235848 Score: 210
Period size: 40 Copynumber: 5.9 Consensus size: 40
27235603 CGAATACACG
* * * *
27235613 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
27235653 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
27235693 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
27235733 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * * *
27235773 GTAACTC-GCACCAATGC-ATTCGGGTCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-A
* *
27235814 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
27235849 CATCATTCAA
Statistics
Matches: 158, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
40 143 0.91
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:27235834 original size:120 final size:120
Alignment explanation
Indices: 27235613--27235848 Score: 270
Period size: 120 Copynumber: 2.0 Consensus size: 120
27235603 CGAATACACG
* * *
27235613 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACCAATGCTATTCGGGG
*
27235678 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
* * * *
27235733 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACCAATGC-ATTC-
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGA--CA-TAACACCAGCACCAATGCTATTCG
* *
27235794 GGGTCTTAGTC-CGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
63 GGGT-TTAG-CACGGATAT-ATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
27235849 CATCATTCAA
Statistics
Matches: 99, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
119 4 0.04
120 65 0.66
121 18 0.18
122 8 0.08
123 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACCAATGCTATTCGGGG
TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
Found at i:27236197 original size:29 final size:29
Alignment explanation
Indices: 27236158--27236236 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
27236148 CTTAATAATC
*
27236158 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27236188 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
27236217 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27236237 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27236279 original size:43 final size:43
Alignment explanation
Indices: 27236218--27236320 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
27236208 TGCATTTCAA
27236218 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
27236261 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
27236304 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
27236321 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:27238225 original size:37 final size:37
Alignment explanation
Indices: 27238175--27238253 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27238165 TTATTACGAA
* * *
27238175 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27238212 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27238249 GTCTT
1 GTCTT
27238254 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27238556 original size:51 final size:47
Alignment explanation
Indices: 27238372--27239353 Score: 1266
Period size: 47 Copynumber: 20.4 Consensus size: 47
27238362 CCTTTCGGGA
* * *
27238372 CTTATCACATTTATGCACTTTCACATTCACCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27238419 CTTATCACACATATACACTTTCGCATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27238466 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27238513 CTTATTACATATATACACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATAT----ACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27238564 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27238611 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27238658 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27238709 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27238756 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27238803 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27238850 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
27238901 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27238952 CTTATTACATATATACATATACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27239003 CTTACCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27239050 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27239101 CTTATCACATATATACATACACTTTCACATTCATCACATCAGCCATTAGG-
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27239151 -----C-C----ATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27239188 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27239239 CTTATCACATTTACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27239288 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27239335 CATATCACACATATACACT
1 CTTATCACATATATACACT
27239354 CTCTTGGCTA
Statistics
Matches: 855, Mismatches: 43, Indels: 74
0.88 0.04 0.08
Matches are distributed among these distances:
36 33 0.04
42 1 0.00
43 1 0.00
44 1 0.00
45 1 0.00
47 422 0.49
49 44 0.05
51 344 0.40
53 4 0.00
55 4 0.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:27238650 original size:145 final size:145
Alignment explanation
Indices: 27238387--27239353 Score: 1383
Period size: 145 Copynumber: 6.7 Consensus size: 145
27238377 CACATTTATG
* *
27238387 CACTTTCACATTCACCACATCGGCTATTAGGCCTTATCACACATATACACTTTCGCATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
*
27238452 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 ATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
27238517 TTACATATATACACA
131 TCACATATATACATA
27238532 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
*
27238597 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 ATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
27238662 TTACATATATACATA
131 TCACATATATACATA
*
27238677 TACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
* *
27238742 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
66 ATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
27238807 TCAC--ACAT--ATA
131 TCACATATATACATA
* *
27238818 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATATACTTTCACATTCA
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC----ACTTTCACATTCA
* * *
27238883 TCACATCGGCCATTAGGCCTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATT
62 TCACATCGGCTATTAGGCCTTATCACACATATAC----ACTTTCACATTCATCACATCGGCTATT
*
27238948 AGGCCTTATTACATATATACATA
123 AGGCCTTATCACATATATACATA
* * *
27238971 TACTTTCACATTCATCACATCAGCTATTAGGCCTTACCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
* * *
27239036 ATCGGCTATTAGGCCTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
66 ATCGGCTATTAGGCCTTATCACACATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
27239101 CTTATCACATATATACATA
127 CTTATCACATATATACATA
* *
27239120 CACTTTCACATTCATCACATCAGCCATTAGG--------C-C--ATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
* * *
27239174 ATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
66 ATCGGCTATTAGGCCTTATCAC--ACAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
27239239 CTTATCACAT-T-TACATA
127 CTTATCACATATATACATA
* * *
27239256 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
*
27239321 ATCGGCTATTAGGCCATATCACACATATACACT
66 ATCGGCTATTAGGCCTTATCACACATATACACT
27239354 CTCTTGGCTA
Statistics
Matches: 761, Mismatches: 34, Indels: 56
0.89 0.04 0.07
Matches are distributed among these distances:
136 36 0.05
137 1 0.00
138 82 0.11
140 5 0.01
141 49 0.06
142 4 0.01
143 10 0.01
144 1 0.00
145 319 0.42
147 41 0.05
149 164 0.22
151 3 0.00
153 46 0.06
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (145 bp):
CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
ATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
TCACATATATACATA
Found at i:27239163 original size:36 final size:36
Alignment explanation
Indices: 27239116--27239188 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
27239106 CACATATATA
27239116 CATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CATACACTTTCACATTCATCACATCAGCCATTAGGC
*
27239152 CATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CATACACTTTCACATTCATCACATCAGCCATTAGGC
27239188 C
1 C
27239189 TTATCACATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.34, G:0.10, T:0.27
Consensus pattern (36 bp):
CATACACTTTCACATTCATCACATCAGCCATTAGGC
Found at i:27239167 original size:87 final size:87
Alignment explanation
Indices: 27239065--27239338 Score: 367
Period size: 87 Copynumber: 3.0 Consensus size: 87
27239055 TACATATATA
*
27239065 CATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACA
1 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACA
*
27239130 TTCATCACATCAGCCATTAGGC
66 TTCATCACATCGGCCATTAGGC
27239152 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACA
1 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACA
27239217 TTCATCACATCGGCCATTAGGCCTTATC
66 TTCATCACATCGGCCATTAGG------C
*
27239245 ACATTTACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTAC--ATAT--ATACAC
1 -CA--T--A--CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACAC
*
27239306 TTTCACATTCATCACATCGGCTATTAGGC
59 TTTCACATTCATCACATCGGCCATTAGGC
27239335 CATA
1 CATA
27239339 TCACACATAT
Statistics
Matches: 170, Mismatches: 4, Indels: 28
0.84 0.02 0.14
Matches are distributed among these distances:
85 1 0.01
87 85 0.50
89 2 0.01
90 1 0.01
93 1 0.01
94 2 0.01
96 34 0.20
98 5 0.03
100 39 0.23
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (87 bp):
CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACA
TTCATCACATCGGCCATTAGGC
Found at i:27239273 original size:49 final size:49
Alignment explanation
Indices: 27239152--27239343 Score: 316
Period size: 49 Copynumber: 3.9 Consensus size: 49
27239142 GCCATTAGGC
27239152 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-T-TA
27239203 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTA
1 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTA
*
27239252 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACA--TA
1 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTA
* * *
27239299 TATACACTTTCACATTCATCACATCGGCTATTAGGCCATATCACA
1 CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
27239344 CATATACACT
Statistics
Matches: 136, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
47 43 0.32
49 46 0.34
50 1 0.01
51 46 0.34
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTA
Found at i:27242591 original size:40 final size:40
Alignment explanation
Indices: 27242546--27242781 Score: 210
Period size: 40 Copynumber: 5.9 Consensus size: 40
27242536 CGAATACACG
* * * *
27242546 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
27242586 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
27242626 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
27242666 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * * *
27242706 GTAACTC-GCACCAATGC-ATTCGGGTCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-A
* *
27242747 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
27242782 CATCATTCAA
Statistics
Matches: 158, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
40 143 0.91
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:27242767 original size:120 final size:120
Alignment explanation
Indices: 27242546--27242781 Score: 270
Period size: 120 Copynumber: 2.0 Consensus size: 120
27242536 CGAATACACG
* * *
27242546 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACCAATGCTATTCGGGG
*
27242611 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
* * * *
27242666 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACCAATGC-ATTC-
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGA--CA-TAACACCAGCACCAATGCTATTCG
* *
27242727 GGGTCTTAGTC-CGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
63 GGGT-TTAG-CACGGATAT-ATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
27242782 CATCATTCAA
Statistics
Matches: 99, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
119 4 0.04
120 65 0.66
121 18 0.18
122 8 0.08
123 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACCAATGCTATTCGGGG
TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
Found at i:27243130 original size:29 final size:29
Alignment explanation
Indices: 27243090--27243169 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
27243080 GCTTAATAAT
*
27243090 AAACCACGCACACTTAGTGCCATGTACTTT-
1 AAACC-CGCACACTTAGTGCCATGCA-TTTC
*
27243120 AAACTCGCACACTTAGTGCCATGCATTTC
1 AAACCCGCACACTTAGTGCCATGCATTTC
*
27243149 AAGCCCGCACACTTAGTGCCA
1 AAACCCGCACACTTAGTGCCA
27243170 ATCTCACAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.84
30 4 0.09
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AAACCCGCACACTTAGTGCCATGCATTTC
Found at i:27243212 original size:43 final size:43
Alignment explanation
Indices: 27243151--27243253 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
27243141 TGCATTTCAA
27243151 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
27243194 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
27243237 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
27243254 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:27245158 original size:37 final size:37
Alignment explanation
Indices: 27245107--27245186 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
27245097 CTTATTACGA
* * *
27245107 AGTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
* *
27245144 GGTCTTACCCGGACAAAATCCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
27245181 AGTCTT
1 AGTCTT
27245187 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATCCCCACACGAAGTCATCG
Found at i:27245374 original size:47 final size:47
Alignment explanation
Indices: 27245305--27245946 Score: 915
Period size: 47 Copynumber: 13.2 Consensus size: 47
27245295 CCTTTCGGGA
* *
27245305 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27245352 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27245399 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27245446 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27245497 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27245544 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27245591 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
27245642 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27245689 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27245740 CTTGTCACATATATACAAACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT----ACACTTTCACATTCATCACATCGGCTATTAGGC
*
27245791 CTTATCACATTTATTCATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TA-T-ATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27245842 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27245891 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
27245938 CTTATCACA
1 CTTATCACA
27245947 CATGTATACT
Statistics
Matches: 552, Mismatches: 22, Indels: 42
0.90 0.04 0.07
Matches are distributed among these distances:
47 281 0.51
48 1 0.00
49 49 0.09
51 214 0.39
53 2 0.00
54 1 0.00
55 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:27245510 original size:98 final size:94
Alignment explanation
Indices: 27245305--27245949 Score: 903
Period size: 98 Copynumber: 6.6 Consensus size: 94
27245295 CCTTTCGGGA
* *
27245305 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
*
27245370 TTTCACATTCATCACGTCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
* * *
27245399 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC--
27245464 ATACTTTCACATTCATCACATCGGCTATTAGGC
64 --ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27245497 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
27245562 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCTATTAGGC
* * * *
27245591 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATAT
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
27245656 ACACTTTCACATTCATCACATCGGCTATTAGGC
62 ACACTTTCACATTCATCACATCGGCTATTAGGC
* * * *
27245689 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTGTCACATATAT
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
*
27245754 ACAAACACTTTCACATTCATCACATCGGCCATTAGGC
62 ----ACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27245791 CTTATCACATTTATTCATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
1 CTTATCACA--TA-T-ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT--
*
27245856 ATACACTTTCACATTCATCACATCGGCCATTAGGC
60 ATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27245891 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
27245950 GTATACTCTC
Statistics
Matches: 510, Mismatches: 23, Indels: 34
0.90 0.04 0.06
Matches are distributed among these distances:
94 103 0.20
96 45 0.09
97 1 0.00
98 229 0.45
100 41 0.08
102 82 0.16
104 4 0.01
105 1 0.00
106 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCTATTAGGC
Found at i:27245584 original size:145 final size:145
Alignment explanation
Indices: 27245321--27245949 Score: 987
Period size: 145 Copynumber: 4.3 Consensus size: 145
27245311 ACATTTATGC
*
27245321 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACG
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
*
27245386 TCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
66 TCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
27245451 TACATATATACATAT
131 TACATATATACATAT
*
27245466 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACG
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
*
27245531 TCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
66 TCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
27245596 TACATATATACATAT
131 TACATATATACATAT
* * *
27245611 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
* *
27245676 TCGGCTATTAGGCCTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGCC
66 TCGGCTATTAGGCCTTATCACACATATAC----ACTTTCACATTCATCACATCGGCCATTAGGCC
* * * *
27245741 TTGTCACATATATACAAAC
127 TTATTACATATATACATAT
* *
27245760 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTTATTCATACACTTTCACATTCAT
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA--CA-T-ATACACTTTCACATTCAT
* *
27245825 CACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGG
62 CACATCGGCTATTAGGCCTTATCACACAT--ATACACTTTCACATTCATCACATCGGCCATTAGG
27245890 CCTTATTACATATATAC----
125 CCTTATTACATATATACATAT
27245907 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
1 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
27245950 GTATACTCTC
Statistics
Matches: 456, Mismatches: 18, Indels: 21
0.92 0.04 0.04
Matches are distributed among these distances:
144 1 0.00
145 234 0.51
147 39 0.09
149 85 0.19
151 47 0.10
152 1 0.00
153 45 0.10
155 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (145 bp):
ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACA
TCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
TACATATATACATAT
Found at i:27246837 original size:29 final size:29
Alignment explanation
Indices: 27246798--27246876 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
27246788 CTTAATAATC
*
27246798 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27246828 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
27246857 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27246877 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27246920 original size:43 final size:43
Alignment explanation
Indices: 27246859--27246960 Score: 195
Period size: 43 Copynumber: 2.4 Consensus size: 43
27246849 GCATTTCAAG
27246859 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
1 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
*
27246902 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTG
1 CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
27246945 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
27246961 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.27, C:0.36, G:0.14, T:0.23
Consensus pattern (43 bp):
CCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTA
Found at i:27248764 original size:40 final size:40
Alignment explanation
Indices: 27248719--27248875 Score: 215
Period size: 40 Copynumber: 3.9 Consensus size: 40
27248709 CGAATACATG
* * *
27248719 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * **
27248759 ACACCAGCACGAATGCTCTTCGGAACTTAGCCCCAATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
27248799 TCACTAGCATAAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
27248839 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
27248876 TTAGTAACTC
Statistics
Matches: 101, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 101 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (40 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:27248900 original size:40 final size:41
Alignment explanation
Indices: 27248732--27248939 Score: 153
Period size: 40 Copynumber: 5.2 Consensus size: 41
27248722 CCAGCATGAT
* * *
27248732 TGCTCTTCGGGACCTAGCCCGGA--TA-TAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACAAA
* ** ** * * *
27248772 TGCTCTTCGGAACTTAGCCCCAATACA-TCACTAGCATAAA
1 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAA
** * * **
27248812 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAA
*
27248852 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAA
* * *
27248893 TGC-CTTCGGG-CTTAGCCTGGAATTAGTATCTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAA
27248932 TGC-CTTCG
1 TGCTCTTCG
27248940 AATCTTAGTC
Statistics
Matches: 141, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
39 33 0.23
40 92 0.65
41 12 0.09
42 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (41 bp):
TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAA
Found at i:27248919 original size:39 final size:40
Alignment explanation
Indices: 27248809--27248993 Score: 139
Period size: 40 Copynumber: 4.6 Consensus size: 40
27248799 TCACTAGCAT
* * * *
27248809 AAATGCTCTTCGGGACTTAGCCCGG-A-TACATCACTAGCAT
1 AAATGC-CTTCGGGACTTAGCCCGGAATTA-GTAACTCGCAC
* *
27248849 GAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
1 AAATGC-CTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
* * *
27248890 CAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
* * * * * *
27248929 AAATGCCTTC-GAATCTTAGTCCGGACA-TGGTCACTTAGCAT
1 AAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCAC
27248970 AAA-GCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAGCCCGGA
27248994 CATCATTCGA
Statistics
Matches: 117, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
39 32 0.27
40 60 0.51
41 22 0.19
42 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
Found at i:27249338 original size:29 final size:29
Alignment explanation
Indices: 27249299--27249377 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
27249289 CTTAATAATC
*
27249299 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27249329 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
27249358 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27249378 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27251334 original size:37 final size:37
Alignment explanation
Indices: 27251284--27251359 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
27251274 TTATTACGAA
* * *
27251284 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27251321 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27251358 GT
1 GT
27251360 TTTTAGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27251655 original size:49 final size:49
Alignment explanation
Indices: 27251481--27251855 Score: 581
Period size: 47 Copynumber: 7.9 Consensus size: 49
27251471 CCCTTCGGGA
* * * * *
27251481 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27251528 CCTGTCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27251575 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27251622 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27251671 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27251720 CTTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27251767 CTTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27251814 CTTATCACATATATATACACTTTCACATTCATCACATCGGCC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCC
27251856 TAATACATTC
Statistics
Matches: 307, Mismatches: 13, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
45 6 0.02
47 171 0.56
48 1 0.00
49 129 0.42
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27251866 original size:71 final size:71
Alignment explanation
Indices: 27251789--27251926 Score: 276
Period size: 71 Copynumber: 1.9 Consensus size: 71
27251779 ATACACTTTC
27251789 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
27251854 CCTAAT
66 CCTAAT
27251860 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
27251925 CC
66 CC
27251927 ATTAGGCCCT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.30
Consensus pattern (71 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
CCTAAT
Found at i:27251913 original size:49 final size:49
Alignment explanation
Indices: 27251860--27252080 Score: 378
Period size: 49 Copynumber: 4.6 Consensus size: 49
27251850 TCGGCCTAAT
27251860 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
*
27251909 ACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
27251958 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--ACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
* *
27252005 ACGTTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTCTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
*
27252052 ACGTTCATCACATCGGCCATTAGGCCTTA
1 ACATTCATCACATCGGCCATTAGGCCTTA
27252081 CTATCATTTC
Statistics
Matches: 166, Mismatches: 4, Indels: 6
0.94 0.02 0.03
Matches are distributed among these distances:
45 6 0.04
47 72 0.43
49 88 0.53
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (49 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
Found at i:27251974 original size:263 final size:263
Alignment explanation
Indices: 27251597--27252080 Score: 905
Period size: 263 Copynumber: 1.8 Consensus size: 263
27251587 ATACACTTTC
27251597 ACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGG
1 ACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGG
27251662 CCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
66 CCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
* *
27251727 CGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACA
131 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
27251792 TTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCT
196 TTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCT
27251857 AAT
261 AAT
*
27251860 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
1 ACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGG
27251925 CCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
66 CCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
* * * *
27251990 CATATATATACTTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACG
131 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
27252055 TTCATCACATCGGCCATTAGGCCTTA
196 TTCATCACATCGGCCATTAGGCCTTA
27252081 CTATCATTTC
Statistics
Matches: 214, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
263 214 1.00
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (263 bp):
ACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACA
TTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCT
AAT
Found at i:27251992 original size:120 final size:118
Alignment explanation
Indices: 27251742--27251975 Score: 432
Period size: 120 Copynumber: 2.0 Consensus size: 118
27251732 ATACACTTTC
*
27251742 ACATTCATCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
*
27251807 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCTAAT
66 ATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCTAAT
27251860 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
1 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGG
27251925 CCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCC
64 CCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCC
27251976 ATTAGGCCTT
Statistics
Matches: 112, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
118 33 0.29
120 79 0.71
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (118 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCTAAT
Found at i:27252036 original size:96 final size:95
Alignment explanation
Indices: 27251860--27252080 Score: 372
Period size: 94 Copynumber: 2.3 Consensus size: 95
27251850 TCGGCCTAAT
27251860 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA-ACTTTCACATTCATCACATCGG
27251925 CCATTAGGCCCTATCACATATATATACACTTTC
65 CCATTAGGCCCTATCAC--ATATATACACTTTC
*
27251958 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT-ACTTTCACGTTCATCACATCGGC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAACTTTCACATTCATCACATCGGC
* *
27252022 CATTAGGCCTTATCACATATATACTCTTTC
66 CATTAGGCCCTATCACATATATACACTTTC
*
27252052 ACGTTCATCACATCGGCCATTAGGCCTTA
1 ACATTCATCACATCGGCCATTAGGCCTTA
27252081 CTATCATTTC
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
94 41 0.34
96 37 0.31
98 41 0.34
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (95 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAACTTTCACATTCATCACATCGGC
CATTAGGCCCTATCACATATATACACTTTC
Found at i:27255116 original size:37 final size:37
Alignment explanation
Indices: 27255066--27255141 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
27255056 TTATTACGAA
* * *
27255066 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27255103 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27255140 GT
1 GT
27255142 TTTTAGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27255341 original size:47 final size:47
Alignment explanation
Indices: 27255263--27255906 Score: 832
Period size: 47 Copynumber: 13.4 Consensus size: 47
27255253 CCCTTCGGGA
* * * * * *
27255263 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
27255310 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27255357 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27255404 CTTATTACATATATACACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATAT----ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
27255455 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27255502 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27255549 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
27255600 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
27255647 CTTATCACACAAATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27255694 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGC
27255745 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
27255796 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
27255847 CTTATCACATATATACAC-TTCACATTCATCACAT--G-C-TTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27255888 CTTATCACACATATACACT
1 CTTATCACATATATACACT
27255907 CTCTTGGCTG
Statistics
Matches: 549, Mismatches: 31, Indels: 39
0.89 0.05 0.06
Matches are distributed among these distances:
41 19 0.03
42 3 0.01
43 1 0.00
44 1 0.00
46 16 0.03
47 281 0.51
49 4 0.01
51 216 0.39
53 4 0.01
55 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27255540 original size:145 final size:145
Alignment explanation
Indices: 27255275--27255906 Score: 897
Period size: 145 Copynumber: 4.4 Consensus size: 145
27255265 TATCACATTT
* * * * * * * * *
27255275 ATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
*
27255340 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
27255405 TTATTACATATATAC
131 TTATTACATATATAC
* *
27255420 ACACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
* * *
27255485 CACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
27255550 TTATTACATATATAC
131 TTATTACATATATAC
* *
27255565 ATATACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
* * * *
27255630 CACGTCGGCTATTAGGCCTTATCACACAAATACACTTTCACATTCATCACATCGGCTATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
27255695 TTATTACATATATAC
131 TTATTACATATATAC
* *
27255710 ATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ACAT--ATACACTTTCACAT
*
27255775 TCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCATCACATCGGCC
62 TCATCACATCGGCCATTAGGCCTTATCAC--ACAT--ATACACTTTCACATTCATCACATCGGCC
*
27255840 ATTAGGCCTTA-T-CACATAT--
123 ATTAGGCCTTATTACATATATAC
27255859 ATACAC-TTCACATTCATCACAT--G-C-TTA-GCCTTATCACACATATACACT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACT
27255907 CTCTTGGCTG
Statistics
Matches: 451, Mismatches: 28, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
139 7 0.02
141 3 0.01
143 10 0.02
144 3 0.01
145 315 0.70
146 1 0.00
147 3 0.01
148 16 0.04
149 46 0.10
151 8 0.02
152 1 0.00
153 38 0.08
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (145 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATTACATATATAC
Found at i:27259143 original size:40 final size:40
Alignment explanation
Indices: 27259098--27259333 Score: 192
Period size: 40 Copynumber: 5.9 Consensus size: 40
27259088 CGAATACACG
* * * *
27259098 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** *
27259138 ACACCAGCACGAATGCACTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
27259178 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
27259218 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * * *
27259258 GTAACTC-GCACCAATGC-GTTCGGGTCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-A
* * *
27259299 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCGCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
27259334 CATCATTCAA
Statistics
Matches: 155, Mismatches: 37, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
40 140 0.90
41 15 0.10
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:27259682 original size:29 final size:29
Alignment explanation
Indices: 27259643--27259721 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
27259633 CTTAATAATC
*
27259643 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27259673 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
* *
27259702 AGCCCACACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27259722 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27259769 original size:43 final size:43
Alignment explanation
Indices: 27259703--27259805 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
27259693 TGCATTTCAA
*
27259703 GCCCACACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
27259746 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
27259789 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
27259806 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:27261566 original size:37 final size:37
Alignment explanation
Indices: 27261516--27261594 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27261506 TTATTACGAA
* * *
27261516 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27261553 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27261590 GTCTT
1 GTCTT
27261595 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27261787 original size:47 final size:47
Alignment explanation
Indices: 27261713--27262360 Score: 945
Period size: 47 Copynumber: 13.4 Consensus size: 47
27261703 CCTTTCGGGA
** * *
27261713 CTTATCACATTTATGCACTTTCACATTCACCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27261760 CTTATCACACATATACACTTTCGCATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27261807 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27261854 CTTATTACATATATACACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATAT----ACACTTTCACATTCATCACATCGGCTATTAGGC
*
27261905 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27261952 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27261999 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
27262050 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27262097 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27262144 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27262195 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ACAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27262246 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27262295 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27262342 CTTATCACACATATACACT
1 CTTATCACACATATACACT
27262361 CTCTTGGCTG
Statistics
Matches: 557, Mismatches: 28, Indels: 32
0.90 0.05 0.05
Matches are distributed among these distances:
47 331 0.59
49 52 0.09
51 166 0.30
53 4 0.01
55 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:27261917 original size:98 final size:97
Alignment explanation
Indices: 27261713--27262358 Score: 936
Period size: 98 Copynumber: 6.7 Consensus size: 97
27261703 CCTTTCGGGA
* * *
27261713 CTTATCACATTTATGCACTTTCACATTCACCACATCGGCTATTAGGCCTTATCACACATAT---A
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAA
* *
27261775 CACTTTCGCATTCATCACGTCGGCTATTAGGC
66 CACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27261807 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA-
27261872 ACACTTTCACATTCATCACATCGGCTATTAGGC
65 ACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27261905 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATAT---A
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAA
27261967 CACTTTCACATTCATCACATCGGCTATTAGGC
66 CACTTTCACATTCATCACATCGGCTATTAGGC
*
27261999 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
*
27262064 ---ACACTTTCACATTCATCACGTCGGCTATTAGGC
62 ACAACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27262097 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA-
* *
27262162 ATACTTTCACATTCATCACATCGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCTATTAGGC
*
27262195 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATAT
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
*
27262258 ACATACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACA-ACACTTTCACATTCATCACATCGGCTATTAGGC
*
27262295 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
27262359 CTCTCTTGGC
Statistics
Matches: 506, Mismatches: 28, Indels: 32
0.89 0.05 0.06
Matches are distributed among these distances:
94 145 0.29
96 39 0.08
98 231 0.46
100 52 0.10
102 39 0.08
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (97 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAA
CACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:27261991 original size:145 final size:145
Alignment explanation
Indices: 27261728--27262360 Score: 1085
Period size: 145 Copynumber: 4.4 Consensus size: 145
27261718 CACATTTATG
* *
27261728 CACTTTCACATTCACCACATCGGCTATTAGGCCTTATCACACATATACACTTTCGCATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
27261793 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
27261858 TTACATATATACACA
131 TTACATATATACATA
27261873 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
27261938 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
27262003 TTACATATATACATA
131 TTACATATATACATA
*
27262018 TACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
27262083 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
27262148 TTACATATATACATA
131 TTACATATATACATA
* * *
27262163 TACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCA
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ACAT--ATACACTTTCACATTCA
* * * *
27262228 TCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAG
62 TCACGTCGGCTATTAGGCCTTATCACACAT--ATACACTTTCACATTCATCACATCGGCTATTAG
27262293 GCCTTATTAC--ATAT--ATA
125 GCCTTATTACATATATACATA
27262310 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
27262361 CTCTTGGCTG
Statistics
Matches: 469, Mismatches: 13, Indels: 14
0.95 0.03 0.03
Matches are distributed among these distances:
143 7 0.01
145 328 0.70
147 44 0.09
149 48 0.10
151 42 0.09
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (145 bp):
CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
TTACATATATACATA
Found at i:27264392 original size:37 final size:37
Alignment explanation
Indices: 27264342--27264420 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27264332 TTATTACGAA
* * *
27264342 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27264379 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27264416 GTCTT
1 GTCTT
27264421 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27264613 original size:47 final size:47
Alignment explanation
Indices: 27264539--27265186 Score: 945
Period size: 47 Copynumber: 13.4 Consensus size: 47
27264529 CCTTTCGGGA
** * *
27264539 CTTATCACATTTATGCACTTTCACATTCACCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27264586 CTTATCACACATATACACTTTCGCATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27264633 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27264680 CTTATTACATATATACACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATAT----ACACTTTCACATTCATCACATCGGCTATTAGGC
*
27264731 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27264778 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27264825 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
27264876 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27264923 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27264970 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27265021 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ACAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27265072 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27265121 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27265168 CTTATCACACATATACACT
1 CTTATCACACATATACACT
27265187 CTCTTGGCTG
Statistics
Matches: 557, Mismatches: 28, Indels: 32
0.90 0.05 0.05
Matches are distributed among these distances:
47 331 0.59
49 52 0.09
51 166 0.30
53 4 0.01
55 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:27264743 original size:98 final size:97
Alignment explanation
Indices: 27264539--27265184 Score: 936
Period size: 98 Copynumber: 6.7 Consensus size: 97
27264529 CCTTTCGGGA
* * *
27264539 CTTATCACATTTATGCACTTTCACATTCACCACATCGGCTATTAGGCCTTATCACACATAT---A
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAA
* *
27264601 CACTTTCGCATTCATCACGTCGGCTATTAGGC
66 CACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27264633 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA-
27264698 ACACTTTCACATTCATCACATCGGCTATTAGGC
65 ACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27264731 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATAT---A
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAA
27264793 CACTTTCACATTCATCACATCGGCTATTAGGC
66 CACTTTCACATTCATCACATCGGCTATTAGGC
*
27264825 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
*
27264890 ---ACACTTTCACATTCATCACGTCGGCTATTAGGC
62 ACAACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27264923 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA-
* *
27264988 ATACTTTCACATTCATCACATCGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCTATTAGGC
*
27265021 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATAT
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
*
27265084 ACATACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACA-ACACTTTCACATTCATCACATCGGCTATTAGGC
*
27265121 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACA
27265185 CTCTCTTGGC
Statistics
Matches: 506, Mismatches: 28, Indels: 32
0.89 0.05 0.06
Matches are distributed among these distances:
94 145 0.29
96 39 0.08
98 231 0.46
100 52 0.10
102 39 0.08
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (97 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAA
CACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:27264817 original size:145 final size:145
Alignment explanation
Indices: 27264554--27265186 Score: 1085
Period size: 145 Copynumber: 4.4 Consensus size: 145
27264544 CACATTTATG
* *
27264554 CACTTTCACATTCACCACATCGGCTATTAGGCCTTATCACACATATACACTTTCGCATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
27264619 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
27264684 TTACATATATACACA
131 TTACATATATACATA
27264699 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
27264764 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
27264829 TTACATATATACATA
131 TTACATATATACATA
*
27264844 TACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
27264909 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
27264974 TTACATATATACATA
131 TTACATATATACATA
* * *
27264989 TACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATACACTTTCACATTCA
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ACAT--ATACACTTTCACATTCA
* * * *
27265054 TCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAG
62 TCACGTCGGCTATTAGGCCTTATCACACAT--ATACACTTTCACATTCATCACATCGGCTATTAG
27265119 GCCTTATTAC--ATAT--ATA
125 GCCTTATTACATATATACATA
27265136 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACT
27265187 CTCTTGGCTG
Statistics
Matches: 469, Mismatches: 13, Indels: 14
0.95 0.03 0.03
Matches are distributed among these distances:
143 7 0.01
145 328 0.70
147 44 0.09
149 48 0.10
151 42 0.09
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (145 bp):
CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
TTACATATATACATA
Found at i:27267217 original size:40 final size:40
Alignment explanation
Indices: 27267173--27267434 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
27267163 GCTCCTCGTT
* *
27267173 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
27267213 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
27267253 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
27267292 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
27267331 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
27267370 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
27267411 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27267435 CATCATTCAA
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 126 0.62
40 64 0.32
41 11 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:27274682 original size:40 final size:40
Alignment explanation
Indices: 27274638--27274899 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
27274628 GCTCCTCGTT
* *
27274638 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
27274678 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
27274718 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
27274757 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
27274796 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
27274835 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
27274876 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27274900 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:27282208 original size:39 final size:39
Alignment explanation
Indices: 27282091--27282299 Score: 316
Period size: 39 Copynumber: 5.3 Consensus size: 39
27282081 GCTCCTCGTT
* *
27282091 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
27282131 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
27282171 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
27282210 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTC-CA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
27282248 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
27282287 CAAATGCCTTCGG
1 CAAATGCCTTCGG
27282300 ATCTTAGTCC
Statistics
Matches: 160, Mismatches: 6, Indels: 7
0.92 0.03 0.04
Matches are distributed among these distances:
38 38 0.24
39 74 0.46
40 46 0.29
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:27282273 original size:77 final size:79
Alignment explanation
Indices: 27282091--27282299 Score: 318
Period size: 77 Copynumber: 2.7 Consensus size: 79
27282081 GCTCCTCGTT
* *
27282091 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGGACTTAACCC
*
27282154 GGATTTAGTAACTCGCA
63 GGAATTAGTAACTCGCA
*
27282171 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
27282235 ATTAGTATCTC-CA
66 ATTAGTAACTCGCA
27282248 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG
27282300 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
77 54 0.44
78 21 0.17
79 32 0.26
80 15 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:27289674 original size:39 final size:39
Alignment explanation
Indices: 27289557--27289818 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
27289547 GCTCCTCGTT
* * *
27289557 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
27289597 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
27289637 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
27289676 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
27289715 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
27289754 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
27289795 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
27289819 CATCATTCAA
Statistics
Matches: 201, Mismatches: 14, Indels: 15
0.87 0.06 0.07
Matches are distributed among these distances:
39 131 0.65
40 60 0.30
41 10 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:27294030 original size:40 final size:40
Alignment explanation
Indices: 27293985--27294220 Score: 210
Period size: 40 Copynumber: 5.9 Consensus size: 40
27293975 CGAATACACG
* * * *
27293985 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
27294025 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
27294065 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
27294105 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * *
27294145 GTAACTC-GCACCAATGC-CTTCGGGTCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-A
* * *
27294186 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCGCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
27294221 CATCATTCAA
Statistics
Matches: 159, Mismatches: 33, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
40 144 0.91
41 15 0.09
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:27294206 original size:120 final size:120
Alignment explanation
Indices: 27293985--27294220 Score: 270
Period size: 120 Copynumber: 2.0 Consensus size: 120
27293975 CGAATACACG
* *
27293985 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACCAATGCTCTTCGGGG
*
27294050 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
* * * *
27294105 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACCAATGC-CTTC-
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGA--CA-TAACACCAGCACCAATGCTCTTCG
* * *
27294166 GGGTCTTAGTC-CGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCGCGGA
63 GGGT-TTAG-CACGGATAT-ATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
27294221 CATCATTCAA
Statistics
Matches: 99, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
119 4 0.04
120 65 0.66
121 18 0.18
122 8 0.08
123 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (120 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACCAATGCTCTTCGGGG
TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
Found at i:27294568 original size:29 final size:29
Alignment explanation
Indices: 27294529--27294607 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
27294519 CTTAATAATC
*
27294529 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27294559 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
27294588 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27294608 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27294637 original size:43 final size:43
Alignment explanation
Indices: 27294589--27294691 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
27294579 TGCATTTCAA
27294589 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
*
27294632 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
27294675 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
27294692 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
Found at i:27296607 original size:37 final size:37
Alignment explanation
Indices: 27296549--27296624 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
27296539 ATTACGAAGT
* * *
27296549 TTACCCGGACATAATCTCCACACGAAGTTATCGGGTC
1 TTACCCGGACAAAATCCCCACACGAAGTCATCGGGTC
*
27296586 TTACCCGGACAAAATCCCCACACGTAGTCATCGGGTC
1 TTACCCGGACAAAATCCCCACACGAAGTCATCGGGTC
27296623 TT
1 TT
27296625 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
TTACCCGGACAAAATCCCCACACGAAGTCATCGGGTC
Found at i:27296812 original size:47 final size:47
Alignment explanation
Indices: 27296743--27297488 Score: 1087
Period size: 47 Copynumber: 15.4 Consensus size: 47
27296733 CCTTTCGGGA
** *
27296743 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27296790 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27296837 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27296884 CTTATTACATATATACACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATAT----ACACTTTCACATTCATCACATCGGCTATTAGGC
*
27296935 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27296982 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27297029 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
27297080 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27297127 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
27297178 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27297225 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27297272 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
* *
27297323 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ACAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27297374 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27297423 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
27297470 CTTATCACACATATACACT
1 CTTATCACACATATACACT
27297489 CTCTTGGCTG
Statistics
Matches: 648, Mismatches: 31, Indels: 40
0.90 0.04 0.06
Matches are distributed among these distances:
47 379 0.58
49 52 0.08
51 209 0.32
53 4 0.01
55 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:27296947 original size:98 final size:94
Alignment explanation
Indices: 27296743--27297488 Score: 1114
Period size: 98 Copynumber: 7.7 Consensus size: 94
27296733 CCTTTCGGGA
* *
27296743 CTTATCACATTTATGCACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
27296808 TTTCACATTCATCACGTCGGCTATTAGGC
66 TTTCACATTCATCACGTCGGCTATTAGGC
* * *
27296837 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT----
*
27296902 ACACTTTCACATTCATCACATCGGCTATTAGGC
62 ACACTTTCACATTCATCACGTCGGCTATTAGGC
* *
27296935 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
27297000 TTTCACATTCATCACGTCGGCTATTAGGC
66 TTTCACATTCATCACGTCGGCTATTAGGC
*
27297029 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
27297094 ACACTTTCACATTCATCACGTCGGCTATTAGGC
62 ACACTTTCACATTCATCACGTCGGCTATTAGGC
*
27297127 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATAT
27297192 ACACTTTCACATTCATCACGTCGGCTATTAGGC
62 ACACTTTCACATTCATCACGTCGGCTATTAGGC
* * *
27297225 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC--
* *
27297290 ATACTTTCACATTCATCACATCGGCCATTAGGC
64 --ACTTTCACATTCATCACGTCGGCTATTAGGC
* *
27297323 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT--
* *
27297388 ATACACTTTCACATTCATCACATCGGCCATTAGGC
60 ATACACTTTCACATTCATCACGTCGGCTATTAGGC
*
27297423 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
27297488 T
66 T
27297489 CTCTTGGCTG
Statistics
Matches: 609, Mismatches: 25, Indels: 36
0.91 0.04 0.05
Matches are distributed among these distances:
94 154 0.25
96 45 0.07
98 320 0.53
100 41 0.07
102 45 0.07
104 4 0.01
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACGTCGGCTATTAGGC
Found at i:27297021 original size:145 final size:145
Alignment explanation
Indices: 27296758--27297487 Score: 1171
Period size: 145 Copynumber: 5.0 Consensus size: 145
27296748 CACATTTATG
27296758 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
* *
27296823 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
*
27296888 TTACATATATACACA
131 TCACATATATACACA
27296903 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
* * *
27296968 GTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
66 GTCGGCTATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
* *
27297033 TTACATATATACATA
131 TCACATATATACACA
*
27297048 TACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
27297113 GTCGGCTATTAGGCCTTATTACATATATACATATACTTTCACATTCATCACATCGGCTATTAGGC
66 GTCGGCTATTAGGCCTTATTACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
27297178 CTTATCACACATAT----A
127 CTTATCACATATATACACA
*
27297193 CACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
* *
27297258 ATCGGCTATTAGGCCTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
66 GTCGGCTATTAGGCCTTATTACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
27297323 CTTATCACATATATACATA
127 CTTATCACATATATACACA
* *
27297342 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT--ATACACTTTCACATTCATC
* *
27297407 ACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
64 ACGTCGGCTATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
*
27297472 TATCACACATATACAC
129 TATCACATATATACAC
27297488 TCTCTTGGCT
Statistics
Matches: 555, Mismatches: 20, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
145 375 0.68
147 46 0.08
149 84 0.15
151 50 0.09
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (145 bp):
CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC
GTCGGCTATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
TCACATATATACACA
Found at i:27311497 original size:15 final size:16
Alignment explanation
Indices: 27311479--27311509 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
27311469 TTTAACTGAG
27311479 TAAAAT-AAAATAAAA
1 TAAAATAAAAATAAAA
27311494 TAAAATAAAAATAAAA
1 TAAAATAAAAATAAAA
27311510 GTTTCAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
TAAAATAAAAATAAAA
Found at i:27311506 original size:6 final size:5
Alignment explanation
Indices: 27311479--27311509 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
27311469 TTTAACTGAG
27311479 TAAAA TAAAA TAAAA TAAAA TAAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA T-AAAA TAAAA
27311510 GTTTCAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:27315534 original size:157 final size:156
Alignment explanation
Indices: 27315283--27315596 Score: 610
Period size: 157 Copynumber: 2.0 Consensus size: 156
27315273 TTTCTTAAGG
27315283 AACTAAAAGTTTATGATATGATTTACATACTTTTTTAATAGTACATTTATGTCATAATTTAGCTA
1 AACTAAAAGTTTATGATATGATTTACATACTTTTTTAATAGTACATTTATGTCATAATTTAGCTA
*
27315348 ACATAACAATTATTTGAAATAACATAACTTTATTCATACTAGAGTTTAGCATATTTAAAAAAAAA
66 ACATAACAATTATTTGAAATAACAGAACTTTATTCATACTAGAGTTTAGCATATTT-AAAAAAAA
27315413 TCATATTTTTGAACAAAATATAACCTA
130 TCATATTTTTGAACAAAATATAACCTA
27315440 AACTAAAAGTTTATGATATGATTTACATACTTTTTTAATAGTACATTTATGTCATAATTTAGCTA
1 AACTAAAAGTTTATGATATGATTTACATACTTTTTTAATAGTACATTTATGTCATAATTTAGCTA
27315505 ACATAACAATTATTTGAAATAACAGAACTTTATTCATACTAGAGTTTAGCATATTTAAAAAAAAT
66 ACATAACAATTATTTGAAATAACAGAACTTTATTCATACTAGAGTTTAGCATATTTAAAAAAAAT
27315570 CATATTTTTGAACAAAATATAACCTA
131 CATATTTTTGAACAAAATATAACCTA
27315596 A
1 A
27315597 TCATAATTAA
Statistics
Matches: 156, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
156 36 0.23
157 120 0.77
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (156 bp):
AACTAAAAGTTTATGATATGATTTACATACTTTTTTAATAGTACATTTATGTCATAATTTAGCTA
ACATAACAATTATTTGAAATAACAGAACTTTATTCATACTAGAGTTTAGCATATTTAAAAAAAAT
CATATTTTTGAACAAAATATAACCTA
Found at i:27317921 original size:16 final size:15
Alignment explanation
Indices: 27317896--27317929 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
27317886 AAAGTTGATA
*
27317896 ATAATTAATATATATT
1 ATAATAAATATA-ATT
27317912 ATAATAAATATAATT
1 ATAATAAATATAATT
27317927 ATA
1 ATA
27317930 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:27318048 original size:30 final size:30
Alignment explanation
Indices: 27317991--27318049 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
27317981 TGCCTTTAAA
* *
27317991 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTT
27318021 AATATTTACAAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
27318050 GAAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACACCAAATTTTT
Found at i:27320008 original size:27 final size:27
Alignment explanation
Indices: 27319978--27320104 Score: 139
Period size: 27 Copynumber: 4.7 Consensus size: 27
27319968 TTGGTTTTAC
* *
27319978 AAAATTACTAAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * *
27320005 AAAATTACTAAAGTACCCTCGGTTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * *
27320032 AAAATTACCAAAGTACCCTTGATTTGC
1 AAAATTACCAAAATACCCTCGATTTGT
*
27320059 AAAATTACCAAAATACCCTC-AGTTTGA
1 AAAATTACCAAAATACCCTCGA-TTTGT
* *
27320086 AAAATTATCGAAATACCCT
1 AAAATTACCAAAATACCCT
27320105 TATAAGTTAA
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 86 0.99
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:27320117 original size:54 final size:54
Alignment explanation
Indices: 27320003--27320117 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 54
27319993 CCCTCGACTT
* * * * **
27320003 GTAAAATTACTAAAGTACCCTCGGTTTGTAAAATTACCAAAGTACCCTTGATTT
1 GTAAAATTACCAAAATACCCTCAGTTTGAAAAATTACCAAAGTACCCTTGATAA
* *
27320057 GCAAAATTACCAAAATACCCTCAGTTTGAAAAATTATCGAAA-TACCCTT-ATAA
1 GTAAAATTACCAAAATACCCTCAGTTTGAAAAATTA-CCAAAGTACCCTTGATAA
27320110 GTTAAAAT
1 G-TAAAAT
27320118 GATCGTTTTG
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
53 3 0.06
54 43 0.86
55 4 0.08
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.30
Consensus pattern (54 bp):
GTAAAATTACCAAAATACCCTCAGTTTGAAAAATTACCAAAGTACCCTTGATAA
Found at i:27320597 original size:27 final size:27
Alignment explanation
Indices: 27320559--27320614 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
27320549 TACTAATATG
* *
27320559 GTATTGGGCTAAGGCCCACCTTGTTCT
1 GTATTGGGCTAAAGCCCACATTGTTCT
*
27320586 GTATTGGGCTAAAGTCCACATTGTTCT
1 GTATTGGGCTAAAGCCCACATTGTTCT
27320613 GT
1 GT
27320615 TCTGTTACTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (27 bp):
GTATTGGGCTAAAGCCCACATTGTTCT
Found at i:27326320 original size:81 final size:82
Alignment explanation
Indices: 27326169--27326404 Score: 291
Period size: 81 Copynumber: 2.9 Consensus size: 82
27326159 GAAATGCCCC
* * * ** **
27326169 ATAGGGTAAAATGATTGAAATACCCCCGTAGGGTGGAATACCAAAATACCCCTATAGGGTAAAAT
1 ATAGGGTAAAATGATCGTAATACCCCTGTAGGGTAAAATACCGTAATACCCCTATAGGGTAAAAT
27326234 GATCGTAATACC-CT-T
66 GATCGTAATACCTCTGT
* *
27326249 ATAGGGTAAAATGATCGTAATAACCCTGTAGGGTAAAATAACCGTAATGCCCCTATAGGGTAAAA
1 ATAGGGTAAAATGATCGTAATACCCCTGTAGGGTAAAAT-ACCGTAATACCCCTATAGGGTAAAA
* *
27326314 TAATCGTAATGCCTCTGT
65 TGATCGTAATACCTCTGT
* **
27326332 A-A-GGTAAAATGATCGTAATACCCCTGTAGGATAAAATGATTGTAATACCCCTATAGGGTAAAA
1 ATAGGGTAAAATGATCGTAATACCCCTGTAGGGTAAAAT-ACCGTAATACCCCTATAGGGTAAAA
*
27326395 TGACCGTAAT
65 TGATCGTAAT
27326405 GTCCTGGTGG
Statistics
Matches: 134, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 33 0.25
81 96 0.72
82 3 0.02
83 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (82 bp):
ATAGGGTAAAATGATCGTAATACCCCTGTAGGGTAAAATACCGTAATACCCCTATAGGGTAAAAT
GATCGTAATACCTCTGT
Found at i:27326403 original size:27 final size:27
Alignment explanation
Indices: 27326146--27326404 Score: 261
Period size: 27 Copynumber: 9.7 Consensus size: 27
27326136 TAACCTCGAT
* * *
27326146 GGGTAAAATGATTGAAATGCCCC-ATA
1 GGGTAAAATGATCGTAATACCCCTATA
* * **
27326172 GGGTAAAATGATTGAAATACCCCCGTA
1 GGGTAAAATGATCGTAATACCCCTATA
** * **
27326199 GGGTGGAAT-ACCAAAATACCCCTATA
1 GGGTAAAATGATCGTAATACCCCTATA
*
27326225 GGGTAAAATGATCGTAATACCCTTATA
1 GGGTAAAATGATCGTAATACCCCTATA
* *
27326252 GGGTAAAATGATCGTAATAACCCTGTA
1 GGGTAAAATGATCGTAATACCCCTATA
* * *
27326279 GGGTAAAATAACCGTAATGCCCCTATA
1 GGGTAAAATGATCGTAATACCCCTATA
* * * *
27326306 GGGTAAAATAATCGTAATGCCTCTGTA
1 GGGTAAAATGATCGTAATACCCCTATA
* *
27326333 AGGTAAAATGATCGTAATACCCCTGTA
1 GGGTAAAATGATCGTAATACCCCTATA
* *
27326360 GGATAAAATGATTGTAATACCCCTATA
1 GGGTAAAATGATCGTAATACCCCTATA
*
27326387 GGGTAAAATGACCGTAAT
1 GGGTAAAATGATCGTAAT
27326405 GTCCTGGTGG
Statistics
Matches: 194, Mismatches: 37, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
26 41 0.21
27 153 0.79
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (27 bp):
GGGTAAAATGATCGTAATACCCCTATA
Found at i:27326520 original size:24 final size:23
Alignment explanation
Indices: 27326444--27326520 Score: 66
Period size: 24 Copynumber: 3.3 Consensus size: 23
27326434 CCTCGAGGTC
*
27326444 AAATGATT-ATTTTGTCTGTGGTT
1 AAATGATTGA-TTTGTCTGTGTTT
* * *
27326467 AAATAACTGATTTGTCTATGTTTT
1 AAATGATTGATTTGTCTGTG-TTT
**
27326491 GTATGATTGATTTGTCTGTGATTT
1 AAATGATTGATTTGTCTGTG-TTT
27326515 AAATGA
1 AAATGA
27326521 CTAACTCTGA
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
23 15 0.38
24 25 0.62
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.49
Consensus pattern (23 bp):
AAATGATTGATTTGTCTGTGTTT
Found at i:27326758 original size:31 final size:32
Alignment explanation
Indices: 27326698--27326763 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
27326688 GCTGCGATGC
*
27326698 TACTGATGGCTTTGTGCCAATCATAGTATCAT
1 TACTGATGGCTTTGTACCAATCATAGTATCAT
* * *
27326730 TACTGATGGCTTTGTATCGAT-ATAGTATCGT
1 TACTGATGGCTTTGTACCAATCATAGTATCAT
27326761 TAC
1 TAC
27326764 NNNNNNNNNN
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 12 0.40
32 18 0.60
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (32 bp):
TACTGATGGCTTTGTACCAATCATAGTATCAT
Found at i:27338297 original size:79 final size:82
Alignment explanation
Indices: 27338186--27338370 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
27338176 GCTACTCGTT
* * *
27338186 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
27338249 GGATTTAGTAAC-TCGCA
65 GGATTTAGTAACTTAGCA
* **
27338266 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
27338329 GATTTGGTCACTTAGCA
66 GATTTAGTAACTTAGCA
27338346 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27338371 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATTTAGTAACTTAGCA
Found at i:27338370 original size:40 final size:40
Alignment explanation
Indices: 27338186--27338370 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
27338176 GCTACTCGTT
*
27338186 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
27338226 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
27338266 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
27338305 CAAATGCCTTC-GGATCTTAGTCCGGATTTGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
27338346 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27338371 CATCATTCAA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:27342672 original size:5 final size:5
Alignment explanation
Indices: 27342662--27342738 Score: 127
Period size: 5 Copynumber: 15.0 Consensus size: 5
27342652 ATGTTGAATG
*
27342662 GATAT GATAT GGTAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT
27342712 GATAT GATAT GATAAT GATAAT GATAT
1 GATAT GATAT GAT-AT GAT-AT GATAT
27342739 TGTTTTGGTT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
5 58 0.84
6 11 0.16
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
GATAT
Found at i:27342921 original size:20 final size:20
Alignment explanation
Indices: 27342887--27342927 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
27342877 AATGAGTCTT
* *
27342887 TTTGCACTTCAGTGCCTTTG
1 TTTGCACTACAGTGCCATTG
*
27342907 TTTGCACTACGGTGCCATTG
1 TTTGCACTACAGTGCCATTG
27342927 T
1 T
27342928 ATAGCATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.41
Consensus pattern (20 bp):
TTTGCACTACAGTGCCATTG
Found at i:27344181 original size:14 final size:14
Alignment explanation
Indices: 27344162--27344189 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
27344152 AAATCAATAC
27344162 ATTGAGACTAATGT
1 ATTGAGACTAATGT
27344176 ATTGAGACTAATGT
1 ATTGAGACTAATGT
27344190 GTAGTTGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
ATTGAGACTAATGT
Found at i:27353505 original size:26 final size:26
Alignment explanation
Indices: 27353469--27353522 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
27353459 AGTTTACTAT
27353469 ATATAAACACATCATTTAATTAATCA
1 ATATAAACACATCATTTAATTAATCA
27353495 ATATAAACACATCATTTAATTAATCA
1 ATATAAACACATCATTTAATTAATCA
27353521 AT
1 AT
27353523 GTTATCATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (26 bp):
ATATAAACACATCATTTAATTAATCA
Found at i:27359475 original size:18 final size:18
Alignment explanation
Indices: 27359452--27359487 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
27359442 CCCGAGCTTA
27359452 AAAGTGACCAAGGACTAT
1 AAAGTGACCAAGGACTAT
27359470 AAAGTGACCAAGGACTAT
1 AAAGTGACCAAGGACTAT
27359488 CTCGTAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (18 bp):
AAAGTGACCAAGGACTAT
Found at i:27363950 original size:51 final size:50
Alignment explanation
Indices: 27363781--27364006 Score: 168
Period size: 51 Copynumber: 4.5 Consensus size: 50
27363771 ATTCGGTGGT
* * * * * * *
27363781 TTGCACATAGTACCACCCATGTGACCATTGTCATCCGATTCACGTAGTAGC
1 TTGCACATAGTACTACACACGTGACCATAGCCAT-CGATACACATAGTAGC
* * * ** * * **
27363832 CTACACATAGTACTACACACGTGATCA-AGCTTTTCGGTTCATGTAGTAGC
1 TTGCACATAGTACTACACACGTGACCATAGC-CATCGATACACATAGTAGC
* * *
27363882 CTGTACATAGTACTACACACGTGACC-TAGGCCATCTGGTACACATAGTAGC
1 TTGCACATAGTACTACACACGTGACCATA-GCCATC-GATACACATAGTAGC
* * * * *
27363933 TTGCACATAGTTCTACACATGTGACCATTATCTATCGATACACGTAGTAGC
1 TTGCACATAGTACTACACACGTGACCA-TAGCCATCGATACACATAGTAGC
*
27363984 TTGCACTTAGTACTACACACGTG
1 TTGCACATAGTACTACACACGTG
27364007 TTCATAGGTA
Statistics
Matches: 138, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
50 41 0.30
51 91 0.66
52 4 0.03
53 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (50 bp):
TTGCACATAGTACTACACACGTGACCATAGCCATCGATACACATAGTAGC
Found at i:27371412 original size:16 final size:14
Alignment explanation
Indices: 27371386--27371428 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
27371376 CAACTACTCA
27371386 TAGTACTACACACG
1 TAGTACTACACACG
27371400 TAGTAGCCTACACA--
1 TAGTA--CTACACACG
27371414 TAGTACTACACACG
1 TAGTACTACACACG
27371428 T
1 T
27371429 GACCAAGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 7 0.28
14 11 0.44
16 7 0.28
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (14 bp):
TAGTACTACACACG
Found at i:27371424 original size:12 final size:12
Alignment explanation
Indices: 27371378--27371425 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 12
27371368 TTTGTTTGCA
*
27371378 ACTACTCATAGT
1 ACTACACATAGT
27371390 ACTACACACGTAGT
1 ACTACACA--TAGT
27371404 AGCCTACACATAGT
1 A--CTACACATAGT
27371418 ACTACACA
1 ACTACACA
27371426 CGTGACCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 14 0.45
14 10 0.32
16 7 0.23
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.23
Consensus pattern (12 bp):
ACTACACATAGT
Found at i:27371506 original size:51 final size:51
Alignment explanation
Indices: 27371395--27371531 Score: 170
Period size: 51 Copynumber: 2.7 Consensus size: 51
27371385 ATAGTACTAC
* *
27371395 ACACGTAGTAGCCTACACATAGTACTACACACGTGACCAAGGCCATCTGGT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAGGCCATCTGAT
* * * * *
27371446 AAACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATG-TATC-GAT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA--AGGCCATCTGAT
*
27371497 ACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTG
27371532 TTCATAGGTA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
51 68 0.93
52 3 0.04
53 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (51 bp):
ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAGGCCATCTGAT
Found at i:27375022 original size:36 final size:36
Alignment explanation
Indices: 27374953--27375023 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
27374943 GGAGCGCATT
* * *
27374953 AGTCATAATAGATCCGAAAGGCTACGGAGCTAAATC
1 AGTCAGAATAGATCCGAAAGGCTACGAAACTAAATC
*
27374989 AGTCAGAATAGATCCGAAAGGCTACTAAACTAAAT
1 AGTCAGAATAGATCCGAAAGGCTACGAAACTAAAT
27375024 AGAGTTTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (36 bp):
AGTCAGAATAGATCCGAAAGGCTACGAAACTAAATC
Found at i:27385524 original size:20 final size:20
Alignment explanation
Indices: 27385501--27385545 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
27385491 AAGTGCAATT
27385501 AGGGGTACCAAAGTACAAAC
1 AGGGGTACCAAAGTACAAAC
*
27385521 AGGGGTACCGAAGTACAAAC
1 AGGGGTACCAAAGTACAAAC
27385541 AGGGG
1 AGGGG
27385546 CACATAAGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.40, C:0.18, G:0.33, T:0.09
Consensus pattern (20 bp):
AGGGGTACCAAAGTACAAAC
Found at i:27385554 original size:20 final size:20
Alignment explanation
Indices: 27385473--27385554 Score: 67
Period size: 20 Copynumber: 4.1 Consensus size: 20
27385463 GGGTACCGAG
* *
27385473 GTACAAACATGGGCACGTAA
1 GTACAAACAGGGGCACATAA
* ** *
27385493 GTGCAATTAGGGGTACCA-AA
1 GTACAAACAGGGGCA-CATAA
* **
27385513 GTACAAACAGGGGTACCGAA
1 GTACAAACAGGGGCACATAA
27385533 GTACAAACAGGGGCACATAA
1 GTACAAACAGGGGCACATAA
27385553 GT
1 GT
27385555 GTAATAATTC
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.15
Consensus pattern (20 bp):
GTACAAACAGGGGCACATAA
Found at i:27388870 original size:41 final size:40
Alignment explanation
Indices: 27388792--27388872 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
27388782 GTAATAGTTT
** * * *
27388792 GGGCCTTAGCCCATCTTAGTACAGTATCAAATATGCAGTA
1 GGGCCTTAGCCCATCACAATACAGTAGCAAACATGCAGTA
*
27388832 GGGCCTTAGCCCATCACAATATCAGTAGCAGACATGCAGTA
1 GGGCCTTAGCCCATCACAATA-CAGTAGCAAACATGCAGTA
27388873 TTCAGTAACA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 18 0.53
41 16 0.47
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (40 bp):
GGGCCTTAGCCCATCACAATACAGTAGCAAACATGCAGTA
Found at i:27395692 original size:27 final size:27
Alignment explanation
Indices: 27395644--27395699 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
27395634 CAGATCAGTA
* **
27395644 ACAGAACAATGTGGGCTTTAGCCCAAT
1 ACAGAACAAGGTGGGCCCTAGCCCAAT
* *
27395671 ACAGAATAAGGTGGGCCCTAGCCTAAT
1 ACAGAACAAGGTGGGCCCTAGCCCAAT
27395698 AC
1 AC
27395700 CACATCAGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
ACAGAACAAGGTGGGCCCTAGCCCAAT
Found at i:27396221 original size:27 final size:27
Alignment explanation
Indices: 27396189--27396349 Score: 157
Period size: 27 Copynumber: 6.0 Consensus size: 27
27396179 TTCTCCAAAC
* *
27396189 TGAGGGTATTTCAATAATTTTGTAATT
1 TGAGGGTATTTCAGTAATTTTGTAAAT
* *
27396216 TAAGGGTACTTT-GGTAATTTTGTAAAT
1 TGAGGGTA-TTTCAGTAATTTTGTAAAT
* *
27396243 TGAGGGTATTT-TGATAATTTTGCAAAT
1 TGAGGGTATTTCAG-TAATTTTGTAAAT
* * ** *
27396270 CGAGGGTACTTT-GGTAATTTTACAAGT
1 TGAGGGTA-TTTCAGTAATTTTGTAAAT
27396297 TGAGGGTATTTCAGTAATTTTGTAAAT
1 TGAGGGTATTTCAGTAATTTTGTAAAT
**
27396324 CAAGGGTATTTCAGTAATTTTGTAAA
1 TGAGGGTATTTCAGTAATTTTGTAAA
27396350 CCAAAGTAAT
Statistics
Matches: 112, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.06
27 98 0.88
28 7 0.06
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.43
Consensus pattern (27 bp):
TGAGGGTATTTCAGTAATTTTGTAAAT
Found at i:27396234 original size:54 final size:54
Alignment explanation
Indices: 27396184--27396344 Score: 198
Period size: 54 Copynumber: 3.0 Consensus size: 54
27396174 GATAATTCTC
* * * *
27396184 CAAACTGAGGGTATTTCAATAATTTTGTAATTTAAGGGTACTTTGGTAATTTTG
1 CAAATTGAGGGTATTTCAATAATTTTGTAAATCAAGGGTACTTTGGTAATTTTA
* ** * *
27396238 TAAATTGAGGGTATTTTGATAATTTTGCAAATCGAGGGTACTTTGGTAATTTTA
1 CAAATTGAGGGTATTTCAATAATTTTGTAAATCAAGGGTACTTTGGTAATTTTA
* * *
27396292 CAAGTTGAGGGTATTTCAGTAATTTTGTAAATCAAGGGTA-TTTCAGTAATTTT
1 CAAATTGAGGGTATTTCAATAATTTTGTAAATCAAGGGTACTTT-GGTAATTTT
27396345 GTAAACCAAA
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 3 0.03
54 86 0.97
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (54 bp):
CAAATTGAGGGTATTTCAATAATTTTGTAAATCAAGGGTACTTTGGTAATTTTA
Found at i:27396275 original size:81 final size:81
Alignment explanation
Indices: 27396163--27396335 Score: 181
Period size: 81 Copynumber: 2.1 Consensus size: 81
27396153 TTTACCTTGT
* ** *
27396163 AAGGTTATTTCGATAATTCTCCAAACTGAGGGTA-TTTCAATAATTTTGTAATTTAAGGGTACTT
1 AAGGGTATTTCGATAATTCTCCAAACTGAGGGTACTTT-AATAATTTTACAAGTTAAGGGTA-TT
* *
27396227 T-GGTAATTTTGTAAATT
64 TCAGTAATTTTGTAAATC
* * * * ** *
27396244 GAGGGTATTTTGATAATTTTGCAAA-TCGAGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTT
1 AAGGGTATTTCGATAATTCTCCAAACT-GAGGGTACTTTAATAATTTTACAAGTTAAGGGTATTT
27396308 CAGTAATTTTGTAAATC
65 CAGTAATTTTGTAAATC
27396325 AAGGGTATTTC
1 AAGGGTATTTC
27396336 AGTAATTTTG
Statistics
Matches: 74, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
80 4 0.05
81 67 0.91
82 3 0.04
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
AAGGGTATTTCGATAATTCTCCAAACTGAGGGTACTTTAATAATTTTACAAGTTAAGGGTATTTC
AGTAATTTTGTAAATC
Found at i:27398432 original size:19 final size:18
Alignment explanation
Indices: 27398399--27398437 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
27398389 ATCGTGAATT
*
27398399 AAAAAGTTAGTCCTTTAA
1 AAAAAGTTAGTCCTTCAA
*
27398417 AAAAAGTTATTACCTTCAA
1 AAAAAGTTAGT-CCTTCAA
27398436 AA
1 AA
27398438 CCTTGTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.31
Consensus pattern (18 bp):
AAAAAGTTAGTCCTTCAA
Done.