Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63843421
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1690000 characters in sequence are not A, C, G, or T
File 98 of 214
Found at i:28360866 original size:195 final size:194
Alignment explanation
Indices: 28360518--28361085 Score: 737
Period size: 195 Copynumber: 2.9 Consensus size: 194
28360508 GATCCTATTT
** * *
28360518 CCCTGGCTTTGCAATGGAACAGATTGAAGCTACGACAACGAATCTTGTTTCCCCGACATTGCAGT
1 CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCCCGACATTGCAGT
* *
28360583 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGACGGTGCAGTGGAACAGATTGAAGC
66 TAAATAGATTGAAGCTACAACAACGAATCTTACTT-CCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * * *
28360648 TACAACGGCGAATATTTTTTCCCCGACATTGCAGTTAAATAGATTGACAACAGCGAATCTTACTT
130 TACGACAGCGAATCTTATTTCCCCGACATTGCAGTTAAATAGATTGACAACAGCGAATCTCACTA
* ** * * *
28360713 CCTTGGTGGTGCAGTAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCTCGACATTGCAAT
1 CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCCCGACATTGCAGT
* * *
28360778 TAAATAGATTGAAGCTACAACAACGAATCTTGCTTCCTTGGCAGTGCAGTCGAACAGATTGAAGC
66 TAAATAGATTGAAGCTACAACAACGAATCTTACTTCC-TGGCGGTGCAGTGGAACAGATTGAAGC
** * *
28360843 TACGACAGTAAATCTTATTTCCCCAACATTGCAGTTAAATAGATTGAAGCTACAACAGTGAATCT
130 TACGACAGCGAATCTTATTTCCCCGACATTGCAGTTAAATAGATT---G--ACAACAGCGAATCT
28360908 CACTA
190 CACTA
* * * *
28360913 CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGATGTCGAATCTTGCTTCCCCAACATTGCAGT
1 CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCCCGACATTGCAGT
* * * *
28360978 TAGATAGATTGAAGCT---ACAACGAATCTTACTTCCCGGCGGTGTAGTGGAATAGATTGAAGCT
66 TAAATAGATTGAAGCTACAACAACGAATCTTACTTCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* *
28361040 ACGACAGCGAATCTTACTTCCCCGACATTACAGTTAAATAGATTGA
131 ACGACAGCGAATCTTATTTCCCCGACATTGCAGTTAAATAGATTGA
28361086 AGATGGTGAA
Statistics
Matches: 321, Mismatches: 46, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
191 1 0.00
193 1 0.00
194 2 0.01
195 151 0.47
196 62 0.19
197 17 0.05
198 1 0.00
200 86 0.27
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (194 bp):
CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCCCGACATTGCAGT
TAAATAGATTGAAGCTACAACAACGAATCTTACTTCCTGGCGGTGCAGTGGAACAGATTGAAGCT
ACGACAGCGAATCTTATTTCCCCGACATTGCAGTTAAATAGATTGACAACAGCGAATCTCACTA
Found at i:28361175 original size:44 final size:44
Alignment explanation
Indices: 28361097--28361246 Score: 147
Period size: 44 Copynumber: 3.4 Consensus size: 44
28361087 GATGGTGAAC
* * * * *
28361097 CTTATCTCCCTAAAGATGCAGCGGAGCAGATTGAAGCTAATAAT
1 CTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGCTAAGAAT
* ** * *
28361141 CTTATCTCCCTAAAGTTACAGTGGGGCAGGTTGAAATTACGAGT
1 CTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGCTAAGAAT
* * * *
28361185 CTTATCTCCCTAAAGTTATAGTGGAGCAGGCTGAAGATAGCGAAT
1 CTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGCTA-AGAAT
* *
28361230 CTTATTTCCCTGAAGTT
1 CTTATCTCCCTAAAGTT
28361247 GCACTGGAAT
Statistics
Matches: 87, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
44 68 0.78
45 19 0.22
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGCTAAGAAT
Found at i:28361299 original size:96 final size:93
Alignment explanation
Indices: 28361174--28361483 Score: 261
Period size: 96 Copynumber: 3.4 Consensus size: 93
28361164 GGGCAGGTTG
*
28361174 AAATTACGAGTCTTATCTCCCTAAAGTTATAGTGGAGCAGGCTGAAGATAGCGAATCTTATTTCC
1 AAATTACGAGTCTTATCTCCCTGAAGTTATAGTGGAGCA-GCTGAAGATAGC-AATCTTATTTCC
*
28361239 CTGAAGTTGCACTGGAATAGATTGAAGCTAT
64 CTGAAGTTGCAGTGGAATAGA-TGAAGCTAT
* * ** * * * * *
28361270 AAATTACCGA-TCTTATCTCTCTGAAGTTATAGTGGAGTA---GATCATATCAAACCTCATCTCT
1 AAATTA-CGAGTCTTATCTCCCTGAAGTTATAGTGGAGCAGCTGAAGATAGC-AATCTTATTTCC
*
28361331 CTGAAGTTGCAGTGG----G--GCATG-T-T
64 CTGAAGTTGCAGTGGAATAGATG-AAGCTAT
** *
28361354 GAAATTACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTTATTTT
1 -AAATTACGAGTCTTATCTCCCTGAAGTTATAGTGGAGCAG-CTGAAGATAGCAA-TCTTATTTC
*
28361419 CCTGACGTTGCAGT-GAGATAGATAGAAGCTAT
63 CCTGAAGTTGCAGTGGA-ATAGAT-GAAGCTAT
*
28361451 AAATTATCGA-TCTTATCTCTCTGAAGTTATAGT
1 AAATTA-CGAGTCTTATCTCCCTGAAGTTATAGT
28361484 AGAGTAGATC
Statistics
Matches: 164, Mismatches: 30, Indels: 40
0.70 0.13 0.17
Matches are distributed among these distances:
84 4 0.02
85 33 0.20
86 2 0.01
88 4 0.02
89 23 0.14
92 28 0.17
93 1 0.01
95 2 0.01
96 60 0.37
97 7 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (93 bp):
AAATTACGAGTCTTATCTCCCTGAAGTTATAGTGGAGCAGCTGAAGATAGCAATCTTATTTCCCT
GAAGTTGCAGTGGAATAGATGAAGCTAT
Found at i:28361560 original size:181 final size:181
Alignment explanation
Indices: 28361141--28361568 Score: 617
Period size: 181 Copynumber: 2.4 Consensus size: 181
28361131 AGCTAATAAT
* * * * **
28361141 CTTATCTCCCTAAAGTTACAGTGGGGCAGGTTGAAATTACGAGTCTTATCTCCCTAAAGTTATAG
1 CTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTGAAATTACGAGTCTTATCTCCCTGAAGTTGCAG
* *
28361206 TGGAGCAGGCTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCACTGGAATAGATTGAAGCTATA
66 TGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCACTGGAATAGATAGAAGCTATA
*
28361271 AATTACCGATCTTATCTCTCTGAAGTTATAGTGGAGTAGATCATATCAAAC
131 AATTACCGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCATATCAAAC
* *
28361322 CTCATCTCTCTGAAGTTGCAGTGGGGCATGTTGAAATTACGAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTGAAATTACGAGTCTTATCTCCCTGAAGTTGCAG
* * *
28361387 TGGAGCAGACTGAAGATAGC-AAGTCTTATTTTCCTGACGTTGCAGT-GAGATAGATAGAAGCTA
66 TGGAGCAGACTGAAGATAGCGAA-TCTTATTTCCCTGAAGTTGCACTGGA-ATAGATAGAAGCTA
*
28361450 TAAATTATCGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCATATCAAAC
129 TAAATTACCGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCATATCAAAC
* * * * ** * *
28361503 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAATCACTAACCTTGTCACCCTGAAGTTGCAG
1 CTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTGAAATTACGAGTCTTATCTCCCTGAAGTTGCAG
28361568 T
66 T
28361569 AGGGTAAGTT
Statistics
Matches: 220, Mismatches: 25, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
180 4 0.02
181 216 0.98
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (181 bp):
CTTATCTCTCTGAAGTTGCAGTGGGGCAGGTTGAAATTACGAGTCTTATCTCCCTGAAGTTGCAG
TGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCACTGGAATAGATAGAAGCTATA
AATTACCGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCATATCAAAC
Found at i:28361745 original size:45 final size:44
Alignment explanation
Indices: 28361694--28361807 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 44
28361684 AGCTACAAGT
** * *
28361694 CTTATCTCACTGAGGTTGCAGTAGAACAGACTAAAGATAGCAATC
1 CTTATCTCACTGAAATTGCAGTAGAACAGACTAAAGACA-CAAAC
* * * * *
28361739 CTTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAGCCACAAAC
1 CTTATCTCACTGAAATTGCAGTAGAACAGACTAAAGACACAAAC
*
28361783 CTTATCTCTCTGAAATTGCAGTAGA
1 CTTATCTCACTGAAATTGCAGTAGA
28361808 GCAGGTTAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 27 0.47
45 31 0.53
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (44 bp):
CTTATCTCACTGAAATTGCAGTAGAACAGACTAAAGACACAAAC
Found at i:28361796 original size:44 final size:44
Alignment explanation
Indices: 28361694--28361847 Score: 146
Period size: 44 Copynumber: 3.5 Consensus size: 44
28361684 AGCTACAAGT
* ** * * * * *
28361694 CTTATCTCACTGAGGTTGCAGTAGAACAGACTAAAGATAGCAATC
1 CTTATCTCCCTGAAATTGCAGTAGAGCAGATTAAA-ACAACAAAC
* * *
28361739 CTTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAGCCACAAAC
1 CTTATCTCCCTGAAATTGCAGTAGAGCAGATTAAAACAACAAAC
* * *
28361783 CTTATCTCTCTGAAATTGCAGTAGAGCAGGTTAAAATAACAAAC
1 CTTATCTCCCTGAAATTGCAGTAGAGCAGATTAAAACAACAAAC
* * *
28361827 CTTATCCCCCTAAAATAGCAG
1 CTTATCTCCCTGAAATTGCAG
28361848 CGGGGCAGGT
Statistics
Matches: 88, Mismatches: 21, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
44 59 0.67
45 29 0.33
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.25
Consensus pattern (44 bp):
CTTATCTCCCTGAAATTGCAGTAGAGCAGATTAAAACAACAAAC
Found at i:28362055 original size:44 final size:43
Alignment explanation
Indices: 28362005--28362118 Score: 140
Period size: 43 Copynumber: 2.6 Consensus size: 43
28361995 CTTATCATAT
*
28362005 CAAACCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAGTA-A
1 CAAACCTTATCTC-CTGAAGTTGCAGTAGAGCAGGTTGAAG-ACA
* * * * *
28362049 CAAACCTCATCCCCTAAAGTTGCAGTGGGGCAGGTTGAAGACA
1 CAAACCTTATCTCCTGAAGTTGCAGTAGAGCAGGTTGAAGACA
28362092 CAAACCTTATCTCCTTGAAGTTGCAGT
1 CAAACCTTATCTCC-TGAAGTTGCAGT
28362119 GGGGCAGATT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.02
43 36 0.61
44 22 0.37
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (43 bp):
CAAACCTTATCTCCTGAAGTTGCAGTAGAGCAGGTTGAAGACA
Found at i:28362125 original size:44 final size:44
Alignment explanation
Indices: 28362005--28362131 Score: 152
Period size: 44 Copynumber: 2.9 Consensus size: 44
28361995 CTTATCATAT
* * *
28362005 CAAACCTTATCT-CTCTGAAGTTGCAGTAGAGTAGGTTGAAGTAA
1 CAAACCTTATCTCCT-TGAAGTTGCAGTGGGGCAGGTTGAAGTAA
* * *
28362049 CAAACCTCATC-CCCTAAAGTTGCAGTGGGGCAGGTTGAAG-ACA
1 CAAACCTTATCTCCTTGAAGTTGCAGTGGGGCAGGTTGAAGTA-A
*
28362092 CAAACCTTATCTCCTTGAAGTTGCAGTGGGGCAGATTGAA
1 CAAACCTTATCTCCTTGAAGTTGCAGTGGGGCAGGTTGAA
28362132 AATATAAGTC
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 1 0.01
43 33 0.47
44 36 0.51
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (44 bp):
CAAACCTTATCTCCTTGAAGTTGCAGTGGGGCAGGTTGAAGTAA
Found at i:28362145 original size:44 final size:44
Alignment explanation
Indices: 28362005--28362164 Score: 144
Period size: 44 Copynumber: 3.7 Consensus size: 44
28361995 CTTATCATAT
* * * * * * *
28362005 CAAACCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAGTA-A
1 CAAACCTTATCTCCCTAAAGTTGCAGTGGGGCAGATTGAA-AACA
* * *
28362049 CAAACCTCATC-CCCTAAAGTTGCAGTGGGGCAGGTTGAAGACA
1 CAAACCTTATCTCCCTAAAGTTGCAGTGGGGCAGATTGAAAACA
* * *
28362092 CAAACCTTATCTCCTTGAAGTTGCAGTGGGGCAGATTGAAAATA
1 CAAACCTTATCTCCCTAAAGTTGCAGTGGGGCAGATTGAAAACA
* ** *
28362136 TAAGTCTTATCTCCCTAAAGTTGTAGTGG
1 CAAACCTTATCTCCCTAAAGTTGCAGTGG
28362165 AGCGAATTAA
Statistics
Matches: 95, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 1 0.01
43 34 0.36
44 60 0.63
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
CAAACCTTATCTCCCTAAAGTTGCAGTGGGGCAGATTGAAAACA
Found at i:28363966 original size:4 final size:4
Alignment explanation
Indices: 28363959--28364000 Score: 75
Period size: 4 Copynumber: 10.5 Consensus size: 4
28363949 ATATATATGT
*
28363959 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ACAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
28364001 TTTGATAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:28376081 original size:72 final size:73
Alignment explanation
Indices: 28375995--28376197 Score: 273
Period size: 72 Copynumber: 2.7 Consensus size: 73
28375985 AATTATGCAT
28375995 TAATTATACTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATATTGAATGCTTGCTCAAAC
1 TAATTATACTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATATTGAATGCTTGCTCAAAC
28376060 GAG-CCAC
66 GAGTCCAC
* * * * *
28376067 TAATTATACCGAATGCTTGCTCAAATGAGCATTATGCACTGATTGTACTGAATGCTTGCTCAAAC
1 TAATTATACTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATATTGAATGCTTGCTCAAAC
28376132 GAGCATTATCCAC
66 GAG-----TCCAC
* * * *
28376145 TGATTATATTGAATGCTTGCTCAAACGAGCATTATCTACTGATTATTTTGAAT
1 TAATTATACTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATATTGAAT
28376198 AAGATTTTCT
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
72 63 0.57
78 48 0.43
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (73 bp):
TAATTATACTGAATGCTTGCTCAAACGAGCATTATCCACTGATTATATTGAATGCTTGCTCAAAC
GAGTCCAC
Found at i:28376166 original size:111 final size:112
Alignment explanation
Indices: 28375956--28376174 Score: 368
Period size: 111 Copynumber: 2.0 Consensus size: 112
28375946 ATGGAATTTC
* * *
28375956 AATTATACTGAATGATTTGCTCAAACGAGAATTATGCATTAATTATACTGAATGCTTGCTCAAAC
1 AATTATACCGAATGACTTGCTCAAACGAGAATTATGCACTAATTATACTGAATGCTTGCTCAAAC
28376021 GAGCATTATCCACTGATTATATTGAATGCTTGCTCAAACGAGCCACT
66 GAGCATTATCCACTGATTATATTGAATGCTTGCTCAAACGAGCCACT
* * * *
28376068 AATTATACCGAATG-CTTGCTCAAATGAGCATTATGCACTGATTGTACTGAATGCTTGCTCAAAC
1 AATTATACCGAATGACTTGCTCAAACGAGAATTATGCACTAATTATACTGAATGCTTGCTCAAAC
28376132 GAGCATTATCCACTGATTATATTGAATGCTTGCTCAAACGAGC
66 GAGCATTATCCACTGATTATATTGAATGCTTGCTCAAACGAGC
28376175 ATTATCTACT
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
111 87 0.87
112 13 0.13
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (112 bp):
AATTATACCGAATGACTTGCTCAAACGAGAATTATGCACTAATTATACTGAATGCTTGCTCAAAC
GAGCATTATCCACTGATTATATTGAATGCTTGCTCAAACGAGCCACT
Found at i:28376197 original size:39 final size:38
Alignment explanation
Indices: 28375957--28376190 Score: 289
Period size: 39 Copynumber: 6.1 Consensus size: 38
28375947 TGGAATTTCA
* * * *
28375957 ATTATACTGAATGATTTGCTCAAACGAGAATTATGCATTA
1 ATTATACTGAATG-CTTGCTCAAACGAGCATTAT-CACTG
28375997 ATTATACTGAATGCTTGCTCAAACGAGCATTATCCACTG
1 ATTATACTGAATGCTTGCTCAAACGAGCATTAT-CACTG
* *
28376036 ATTATATTGAATGCTTGCTCAAACGAGC-----CACTA
1 ATTATACTGAATGCTTGCTCAAACGAGCATTATCACTG
* *
28376069 ATTATACCGAATGCTTGCTCAAATGAGCATTATGCACTG
1 ATTATACTGAATGCTTGCTCAAACGAGCATTAT-CACTG
*
28376108 ATTGTACTGAATGCTTGCTCAAACGAGCATTATCCACTG
1 ATTATACTGAATGCTTGCTCAAACGAGCATTAT-CACTG
*
28376147 ATTATATTGAATGCTTGCTCAAACGAGCATTATCTACTG
1 ATTATACTGAATGCTTGCTCAAACGAGCATTATC-ACTG
28376186 ATTAT
1 ATTAT
28376191 TTTGAATAAG
Statistics
Matches: 170, Mismatches: 17, Indels: 15
0.84 0.08 0.07
Matches are distributed among these distances:
33 29 0.17
38 1 0.01
39 127 0.75
40 13 0.08
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (38 bp):
ATTATACTGAATGCTTGCTCAAACGAGCATTATCACTG
Found at i:28379818 original size:23 final size:24
Alignment explanation
Indices: 28379792--28379839 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
28379782 TTCAGAATTT
28379792 GCCACAAAGGC-ATCCCTTTTAGA
1 GCCACAAAGGCTATCCCTTTTAGA
* *
28379815 GCCACAAAGGCTATTCTTTTTAGA
1 GCCACAAAGGCTATCCCTTTTAGA
28379839 G
1 G
28379840 TTTGCCACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (24 bp):
GCCACAAAGGCTATCCCTTTTAGA
Found at i:28393295 original size:34 final size:34
Alignment explanation
Indices: 28393257--28393324 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
28393247 ATAAGAAATG
*
28393257 GCTATTGAGGGCATTAGTTTAAAATGGAGTTATA
1 GCTATTAAGGGCATTAGTTTAAAATGGAGTTATA
28393291 GCTATTAAGGGCATTAGTTTAAAATGGAGTTATA
1 GCTATTAAGGGCATTAGTTTAAAATGGAGTTATA
28393325 TAGGGAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (34 bp):
GCTATTAAGGGCATTAGTTTAAAATGGAGTTATA
Found at i:28406542 original size:124 final size:124
Alignment explanation
Indices: 28406178--28406587 Score: 669
Period size: 124 Copynumber: 3.3 Consensus size: 124
28406168 ATTTATTAAG
*
28406178 GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
* * * *
28406243 ATTTTTGAGCAAATAGTATAAAAACGTTTCAAGCAGTATGCTTTATCAGAAGAATTTCT
66 GTTTCTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
*
28406302 -AAATCGCTCCCACGTGGACACGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
* * * *
28406366 GTTTCTCAGCAAATAGTATAAAAAACGCTTGAAACAGGATGATTTATCAGAAGAATTTCT
66 GTTTCTGAGCAAATAGTAT-AAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
* * *
28406426 GAAATCGCTCTCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAT
1 GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
28406491 GTTTCTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
66 GTTTCTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
* *
28406550 GAAATCGCTCCCACGTGGACGCGTTTTTGCTACAGTAG
1 GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAG
28406588 CATGTTTGGG
Statistics
Matches: 264, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
123 78 0.30
124 108 0.41
125 78 0.30
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (124 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
GTTTCTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
Found at i:28409841 original size:49 final size:49
Alignment explanation
Indices: 28409788--28410153 Score: 651
Period size: 49 Copynumber: 7.5 Consensus size: 49
28409778 TAAGAATATT
* *
28409788 AACTATTTTGTATTTTATTAAATGAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
* * *
28409837 AACTATTTTGTATTTTATTAAATGAAATAATATTAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
28409886 AACTATTTTGTATTTTATTACATCAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
28409935 AACTATTTTGTATTTTATTACATCAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
28409984 AACTATTTTGTATTTTATTACATCAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
28410033 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAGTA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
28410082 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
28410131 AACTATTTTGTATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
28410154 TAATATAAAC
Statistics
Matches: 309, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 309 1.00
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:28410302 original size:21 final size:22
Alignment explanation
Indices: 28410278--28410332 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
28410268 AGCTTTCGAC
*
28410278 GGGGATTGTGGTTGC-TCCGGT-
1 GGGGATTCTGGTT-CATCCGGTA
28410299 GGGGATTCTGGTTCATCCGGTA
1 GGGGATTCTGGTTCATCCGGTA
28410321 GGGGA-TCTGGTT
1 GGGGATTCTGGTT
28410333 GTCGGTGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 1 0.03
21 25 0.81
22 5 0.16
ACGTcount: A:0.09, C:0.15, G:0.44, T:0.33
Consensus pattern (22 bp):
GGGGATTCTGGTTCATCCGGTA
Found at i:28416086 original size:24 final size:25
Alignment explanation
Indices: 28416057--28416110 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
28416047 TTTCTAAAAA
* *
28416057 ATTTAGTA-TTTATTAGTATAATAT
1 ATTTAGCATTTTATTAGCATAATAT
* *
28416081 ATTTAGCATTTTGTTAGCATAATTT
1 ATTTAGCATTTTATTAGCATAATAT
28416106 ATTTA
1 ATTTA
28416111 ACCTACGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (25 bp):
ATTTAGCATTTTATTAGCATAATAT
Found at i:28430633 original size:21 final size:21
Alignment explanation
Indices: 28430607--28430650 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
28430597 TAATATTACT
* *
28430607 GCTACAATATCCAATCTCACC
1 GCTACAATAACAAATCTCACC
*
28430628 GCTACAGTAACAAATCTCACC
1 GCTACAATAACAAATCTCACC
28430649 GC
1 GC
28430651 CACCGCTGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.36, G:0.09, T:0.20
Consensus pattern (21 bp):
GCTACAATAACAAATCTCACC
Found at i:28452481 original size:16 final size:16
Alignment explanation
Indices: 28452460--28452501 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
28452450 TTATTAAATT
*
28452460 ATATATTTTAATTATA
1 ATATATTTTAATAATA
28452476 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
28452491 AT-TATGTTTAA
1 ATATAT-TTTAA
28452502 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:28452486 original size:15 final size:15
Alignment explanation
Indices: 28452451--28452492 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
28452441 TTAAGAATTT
*
28452451 TATTAAATTAT-ATA
1 TATTTAATTATAATA
28452465 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
28452479 TATTTAATAATAAT
1 TATTTAATTATAAT
28452493 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:28452643 original size:15 final size:15
Alignment explanation
Indices: 28452608--28452659 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
28452598 TTAAGAATTT
*
28452608 TATTAAATTAT-ATA
1 TATTTAATTATAATA
28452622 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
28452636 TATTTAATAATAAT-
1 TATTTAATTATAATA
28452650 TATGTTAATT
1 TAT-TTAATT
28452660 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:28452743 original size:120 final size:120
Alignment explanation
Indices: 28452594--28452892 Score: 559
Period size: 117 Copynumber: 2.5 Consensus size: 120
28452584 ATTTCTGCTA
28452594 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAT
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAT
28452659 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
66 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
28452714 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATA-TT--TAATAATTATGTTAAT
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAT
28452776 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
66 TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
* *
28452831 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
28452893 TAAATATGAT
Statistics
Matches: 174, Mismatches: 2, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
117 114 0.66
118 2 0.01
119 2 0.01
120 56 0.32
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (120 bp):
ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAT
TTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTG
Found at i:28452858 original size:61 final size:61
Alignment explanation
Indices: 28452676--28452860 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
28452666 TTATAGTATC
28452676 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * *
28452737 ATATATT-TTAATT-A-T-AATAT-ATTTAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
28452793 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
28452854 ATATATT
1 ATATATT
28452861 TTAATTAAAA
Statistics
Matches: 95, Mismatches: 16, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
55 2 0.02
56 18 0.19
57 21 0.22
58 3 0.03
59 3 0.03
60 21 0.22
61 25 0.26
62 2 0.02
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:28452869 original size:18 final size:18
Alignment explanation
Indices: 28452841--28452889 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
28452831 ATTATTAAGA
28452841 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
28452858 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
28452874 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
28452890 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:28452875 original size:16 final size:16
Alignment explanation
Indices: 28452841--28452895 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
28452831 ATTATTAAGA
28452841 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
28452858 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
28452874 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
28452888 ATGTTTAA
1 AT-TTTAA
28452896 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:28453105 original size:44 final size:45
Alignment explanation
Indices: 28453040--28453130 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
28453030 ACCTCTATTC
* * *
28453040 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
28453084 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
28453129 CA
1 CA
28453131 CCTCTAATCT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:28453132 original size:16 final size:16
Alignment explanation
Indices: 28453111--28453179 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
28453101 GATTAGCTAT
28453111 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
28453127 TACACCTCTAATCTCAA
1 TACACCTCTAATC-CAA
28453144 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
28453160 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
28453176 TACA
1 TACA
28453180 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:28453153 original size:33 final size:32
Alignment explanation
Indices: 28453111--28453179 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
28453101 GATTAGCTAT
28453111 TACACCTCTAATCCAATACACCTCTAATCTCAA
1 TACACCTCTAATCCAATACACCTCTAATC-CAA
28453144 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
28453176 TACA
1 TACA
28453180 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 7 0.19
33 29 0.81
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:28455181 original size:12 final size:12
Alignment explanation
Indices: 28455156--28455194 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
28455146 ACTCGCTTCT
* *
28455156 TTACTTACTCAC
1 TTACTTGCTTAC
*
28455168 TTACTTGTTTAC
1 TTACTTGCTTAC
28455180 TTACTTGCTTAC
1 TTACTTGCTTAC
28455192 TTA
1 TTA
28455195 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:28455570 original size:30 final size:30
Alignment explanation
Indices: 28455536--28455593 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
28455526 CCTTGACTTG
28455536 AACTTTGGAAAAATTACGA-TTTTGCCCCTA
1 AACTTTGGAAAAATTAC-ACTTTTGCCCCTA
* * *
28455566 AACTTTTGCATAATTACACTTTTGCCCC
1 AACTTTGGAAAAATTACACTTTTGCCCC
28455594 AAAGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:28458740 original size:17 final size:18
Alignment explanation
Indices: 28458701--28458741 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
28458691 TTGTCGGGGC
28458701 AAAAAGAAACCCAATCGT
1 AAAAAGAAACCCAATCGT
*
28458719 AAAAAGAAACCTAATCGT
1 AAAAAGAAACCCAATCGT
28458737 AAAAA
1 AAAAA
28458742 CCCTAGACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.61, C:0.17, G:0.10, T:0.12
Consensus pattern (18 bp):
AAAAAGAAACCCAATCGT
Found at i:28458865 original size:8 final size:8
Alignment explanation
Indices: 28458852--28458884 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
28458842 TTTAATGGTT
28458852 ATATTTAA
1 ATATTTAA
28458860 ATATTTAA
1 ATATTTAA
*
28458868 ATGTTTAA
1 ATATTTAA
28458876 ATATTTAA
1 ATATTTAA
28458884 A
1 A
28458885 ATATAGTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (8 bp):
ATATTTAA
Found at i:28458959 original size:30 final size:30
Alignment explanation
Indices: 28458920--28458976 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
28458910 ATTTATAAAT
28458920 AATTAATA-TTAAT-TGCTTAAAAATATTTAA
1 AATTAATATTTAATAT-CTT-AAAATATTTAA
*
28458950 AATTTATATTTAATATCTTAAAATATT
1 AATTAATATTTAATATCTTAAAATATT
28458977 AACAAGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 15 0.62
31 8 0.33
32 1 0.04
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (30 bp):
AATTAATATTTAATATCTTAAAATATTTAA
Found at i:28463496 original size:9 final size:9
Alignment explanation
Indices: 28463482--28463518 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
28463472 ACTGTTCGAG
28463482 GGCATGGGT
1 GGCATGGGT
28463491 GGCATGGGT
1 GGCATGGGT
28463500 GGCAT--G-
1 GGCATGGGT
28463506 GGCATGGGT
1 GGCATGGGT
28463515 GGCA
1 GGCA
28463519 GTAGTTCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
6 5 0.20
7 1 0.04
8 1 0.04
9 18 0.72
ACGTcount: A:0.14, C:0.14, G:0.54, T:0.19
Consensus pattern (9 bp):
GGCATGGGT
Found at i:28466821 original size:5 final size:5
Alignment explanation
Indices: 28466808--28466856 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
28466798 AATAAATTAG
*
28466808 TTATG TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT
28466857 GAAATAAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:28467176 original size:16 final size:17
Alignment explanation
Indices: 28467146--28467188 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
28467136 CATTTGTAAT
28467146 ATATTTATT-TAATTAG
1 ATATTTATTATAATTAG
*
28467162 ATATTTATTAT-ATTAT
1 ATATTTATTATAATTAG
*
28467178 ATTTTTATTAT
1 ATATTTATTAT
28467189 TATTGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 23 0.96
17 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
ATATTTATTATAATTAG
Found at i:28468409 original size:23 final size:23
Alignment explanation
Indices: 28468382--28468450 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
28468372 GGCTTTGTCG
28468382 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
28468405 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* * **
28468428 TTCAGGCACCTCGTGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
28468451 CAGGAACCTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCGTAT
Found at i:28468453 original size:21 final size:21
Alignment explanation
Indices: 28468377--28468532 Score: 111
Period size: 21 Copynumber: 7.4 Consensus size: 21
28468367 TTATCGGCTT
* *
28468377 TGTCG-ATCAGGCACTTTATG
1 TGTCGTATCAGGCACCTCATG
* *
28468397 TGTCGTATATCAGGCACTTTATG
1 TGTCG--TATCAGGCACCTCATG
*
28468420 TGTCGTATTTCAGGCACCTCGTG
1 TGTCGTA--TCAGGCACCTCATG
* ***
28468443 TGTCGTATCAGGAACCTCGCA
1 TGTCGTATCAGGCACCTCATG
***
28468464 T-TCGTATCAGGCACCTCGCA
1 TGTCGTATCAGGCACCTCATG
* *
28468484 TGTCGTATCAGACACCTCACG
1 TGTCGTATCAGGCACCTCATG
* *
28468505 TGTCGTTTCAGGCA-CTTATG
1 TGTCGTATCAGGCACCTCATG
28468525 TGTCGTAT
1 TGTCGTAT
28468533 ACTAATCAGG
Statistics
Matches: 115, Mismatches: 15, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
20 35 0.30
21 42 0.37
23 38 0.33
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (21 bp):
TGTCGTATCAGGCACCTCATG
Found at i:28468501 original size:41 final size:42
Alignment explanation
Indices: 28468420--28468519 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 42
28468410 GCACTTTATG
** *
28468420 TGTCGTATTTCAGGCACCTCGTGTGTCGTATCAGGAACCTCGCA
1 TGTCGTA--TCAGGCACCTCGCATGTCGTATCAGGAACCTCACA
*
28468464 T-TCGTATCAGGCACCTCGCATGTCGTATCA-GACACCTCACG
1 TGTCGTATCAGGCACCTCGCATGTCGTATCAGGA-ACCTCACA
*
28468505 TGTCGTTTCAGGCAC
1 TGTCGTATCAGGCAC
28468520 TTATGTGTCG
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 2 0.04
41 29 0.59
42 12 0.24
43 5 0.10
44 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.28
Consensus pattern (42 bp):
TGTCGTATCAGGCACCTCGCATGTCGTATCAGGAACCTCACA
Found at i:28468529 original size:41 final size:41
Alignment explanation
Indices: 28468383--28468532 Score: 99
Period size: 41 Copynumber: 3.5 Consensus size: 41
28468373 GCTTTGTCGA
* * * *
28468383 TCAGGCACTTTATGTGTCGTATATCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TTATGTGTCG--TATCAGACACCTCACGTGTCG--TT
** * * *
28468429 TCAGGCACCTCGTGTGTCGTATCAGGA-ACCTCGCAT-TCGTA
1 TCAGGCA-CTTATGTGTCGTATCA-GACACCTCACGTGTCGTT
* *
28468470 TCAGGCACCT-CGCATGTCGTATCAGACACCTCACGTGTCGTT
1 TCAGGCACTTATG--TGTCGTATCAGACACCTCACGTGTCGTT
28468512 TCAGGCACTTATGTGTCGTAT
1 TCAGGCACTTATGTGTCGTAT
28468533 ACTAATCAGG
Statistics
Matches: 80, Mismatches: 17, Indels: 19
0.69 0.15 0.16
Matches are distributed among these distances:
39 1 0.01
40 3 0.04
41 33 0.41
42 13 0.16
43 4 0.05
44 9 0.11
45 1 0.01
46 15 0.19
47 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (41 bp):
TCAGGCACTTATGTGTCGTATCAGACACCTCACGTGTCGTT
Found at i:28468906 original size:12 final size:12
Alignment explanation
Indices: 28468889--28468914 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
28468879 ATAAAAGAAC
28468889 GAATTGATAATG
1 GAATTGATAATG
28468901 GAATTGATAATG
1 GAATTGATAATG
28468913 GA
1 GA
28468915 TGAGTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (12 bp):
GAATTGATAATG
Found at i:28472240 original size:29 final size:29
Alignment explanation
Indices: 28472169--28472241 Score: 83
Period size: 29 Copynumber: 2.5 Consensus size: 29
28472159 GTTCATGCTG
28472169 TATCAAGCACTATGTGCCAATGTTATATT
1 TATCAAGCACTATGTGCCAATGTTATATT
* * *** *
28472198 TATCAGGCATTATGTGCTGGTGTTATTTT
1 TATCAAGCACTATGTGCCAATGTTATATT
*
28472227 TATCAAGTACTATGT
1 TATCAAGCACTATGT
28472242 AATGGTGGAT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (29 bp):
TATCAAGCACTATGTGCCAATGTTATATT
Found at i:28475738 original size:16 final size:16
Alignment explanation
Indices: 28475717--28475749 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
28475707 AAAGGTCCTA
28475717 AGCACGCCAAGTTTTT
1 AGCACGCCAAGTTTTT
28475733 AGCACGCCAAGTTTTT
1 AGCACGCCAAGTTTTT
28475749 A
1 A
28475750 AAGGAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (16 bp):
AGCACGCCAAGTTTTT
Found at i:28483109 original size:39 final size:40
Alignment explanation
Indices: 28482879--28483102 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
28482869 TTGAATGATG
* * * *
28482879 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
28482919 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
28482959 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
28482999 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
28483038 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
28483078 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
28483103 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 57 0.35
40 99 0.60
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:28483109 original size:79 final size:78
Alignment explanation
Indices: 28482879--28483121 Score: 269
Period size: 79 Copynumber: 3.1 Consensus size: 78
28482869 TTGAATGATG
* * * *
28482879 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA-CCGGGCTAAG-TCCCGAAGGCAT
28482942 TTGTGCGAGATACTAAA
63 TTGTGCGAG-TACTAAA
* * * *
28482959 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATACCGGGCTAAGTCCCGAAGGCATT
28483022 TGTGCGAGTTACTAAA
64 TGTGCGAG-TACTAAA
* *
28483038 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACCGGGCTAAGTCCCGAAGGCATTTG
** *
28483103 AACGAGTAGCTATA
66 TGCGAGTA-CTAAA
28483117 TCCGG
1 TCCGG
28483122 TTAAATTCCG
Statistics
Matches: 138, Mismatches: 18, Indels: 15
0.81 0.11 0.09
Matches are distributed among these distances:
78 14 0.10
79 84 0.61
80 31 0.22
81 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTACTAAA
Found at i:28483133 original size:39 final size:40
Alignment explanation
Indices: 28482879--28483135 Score: 233
Period size: 40 Copynumber: 6.5 Consensus size: 40
28482869 TTGAATGATG
* * * *
28482879 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
** * *
28482919 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
** * *
28482959 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTA-A
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
28482998 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
28483038 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
28483078 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
* *
28483117 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
28483136 TACGTGATTT
Statistics
Matches: 189, Mismatches: 20, Indels: 17
0.84 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 78 0.41
40 101 0.53
41 8 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:28486066 original size:41 final size:41
Alignment explanation
Indices: 28486020--28486101 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
28486010 TTATTTTCAG
28486020 TTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCAAA
1 TTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCAAA
28486061 TTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCAAA
1 TTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCAAA
28486102 CTTTATGGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (41 bp):
TTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCAAA
Found at i:28486929 original size:7 final size:7
Alignment explanation
Indices: 28486917--28486943 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
28486907 AATAAATCAC
28486917 AATAAAG
1 AATAAAG
28486924 AATAAAG
1 AATAAAG
28486931 AATAAAG
1 AATAAAG
28486938 AATAAA
1 AATAAA
28486944 TTAGGAGACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (7 bp):
AATAAAG
Found at i:28494952 original size:42 final size:42
Alignment explanation
Indices: 28494904--28494986 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
28494894 TCCACATGAC
* *
28494904 CTGAGACACGGGCGTGTCTCTTGACCGTGTGAGATGCACGGT
1 CTGAGACACGGACGTGTCTCTTGACCGTGTGAGAAGCACGGT
*
28494946 CTGAGACACGGACGTGTCTCTTGACCGTGTTAGAAGCACGG
1 CTGAGACACGGACGTGTCTCTTGACCGTGTGAGAAGCACGG
28494987 CCTGGCCATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.19, C:0.24, G:0.34, T:0.23
Consensus pattern (42 bp):
CTGAGACACGGACGTGTCTCTTGACCGTGTGAGAAGCACGGT
Found at i:28498568 original size:116 final size:117
Alignment explanation
Indices: 28498403--28498633 Score: 367
Period size: 116 Copynumber: 2.0 Consensus size: 117
28498393 GTTGATGCAT
*
28498403 TGAGCAAGAAATCGATGACTAATTTGAGAGCGATGTTCGCTAAGTAGAGTTTGACTGATG-GAGG
1 TGAGCAAAAAATCGATGACTAATTTGAGAGCGATGTTCGCTAAGTAGAGTTTGACTGATGAGAGG
*
28498467 TTTGCTTGCAAAGTTACAAGTGATACCTACCTTAGTGGATGGGGTTTGGAAC
66 TTTGCTTGCAAAGTTACAAGTGAGACCTACCTTAGTGGATGGGGTTTGGAAC
* *
28498519 TGAGCAAAAAA-CTGATGACTGATTTGAGAGCGATGTTTGCTAAGTAGAGTTTGACTGATGATAG
1 TGAGCAAAAAATC-GATGACTAATTTGAGAGCGATGTTCGCTAAGTAGAGTTTGACTGATG--AG
**
28498583 AGGTTTGCTTGTGAAGTTACAAGTGAGACCTACCTTAGTGGATGGGGTTTG
63 AGGTTTGCTTGCAAAGTTACAAGTGAGACCTACCTTAGTGGATGGGGTTTG
28498634 ATCGAAGCAA
Statistics
Matches: 105, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
115 1 0.01
116 55 0.52
119 49 0.47
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (117 bp):
TGAGCAAAAAATCGATGACTAATTTGAGAGCGATGTTCGCTAAGTAGAGTTTGACTGATGAGAGG
TTTGCTTGCAAAGTTACAAGTGAGACCTACCTTAGTGGATGGGGTTTGGAAC
Found at i:28506817 original size:29 final size:30
Alignment explanation
Indices: 28506766--28506832 Score: 100
Period size: 29 Copynumber: 2.2 Consensus size: 30
28506756 AGAAAAGTTT
*
28506766 ATTGTGATTAATTTTTATGATTTGCCAATTG
1 ATTG-GATTAATTTTTATAATTTGCCAATTG
*
28506797 ATTGGATTAA-TTTTATAATTTTCCAATTG
1 ATTGGATTAATTTTTATAATTTGCCAATTG
28506826 ATTGGAT
1 ATTGGAT
28506833 GCATGTGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 24 0.71
30 6 0.18
31 4 0.12
ACGTcount: A:0.28, C:0.06, G:0.15, T:0.51
Consensus pattern (30 bp):
ATTGGATTAATTTTTATAATTTGCCAATTG
Found at i:28520995 original size:17 final size:19
Alignment explanation
Indices: 28520966--28521005 Score: 50
Period size: 17 Copynumber: 2.2 Consensus size: 19
28520956 CATATTTATA
28520966 ACATGATACTATA-A-TCC
1 ACATGATACTATACATTCC
28520983 ACATGAT-CATATACATTCC
1 ACATGATAC-TATACATTCC
28521002 ACAT
1 ACAT
28521006 AAAAATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 1 0.05
17 11 0.55
18 1 0.05
19 7 0.35
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (19 bp):
ACATGATACTATACATTCC
Found at i:28529344 original size:24 final size:24
Alignment explanation
Indices: 28529317--28529374 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
28529307 ACTTCCTCTG
28529317 GATCTTCCTCAAGATCTTCTTCGA
1 GATCTTCCTCAAGATCTTCTTCGA
*
28529341 GATCTTCCTCAAGATCTTCTTCGT
1 GATCTTCCTCAAGATCTTCTTCGA
28529365 GATCTTCCTC
1 GATCTTCCTC
28529375 GTCTTTTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.17, C:0.31, G:0.12, T:0.40
Consensus pattern (24 bp):
GATCTTCCTCAAGATCTTCTTCGA
Found at i:28529376 original size:12 final size:12
Alignment explanation
Indices: 28529308--28529375 Score: 75
Period size: 12 Copynumber: 5.7 Consensus size: 12
28529298 CCTTTTGAAA
28529308 CTTCCTCTG-GAT
1 CTTCCTC-GAGAT
*
28529320 CTTCCTCAAGAT
1 CTTCCTCGAGAT
*
28529332 CTTCTTCGAGAT
1 CTTCCTCGAGAT
*
28529344 CTTCCTCAAGAT
1 CTTCCTCGAGAT
* *
28529356 CTTCTTCGTGAT
1 CTTCCTCGAGAT
28529368 CTTCCTCG
1 CTTCCTCG
28529376 TCTTTTGATT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
12 46 1.00
ACGTcount: A:0.15, C:0.32, G:0.13, T:0.40
Consensus pattern (12 bp):
CTTCCTCGAGAT
Found at i:28536573 original size:40 final size:40
Alignment explanation
Indices: 28536515--28536591 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
28536505 CATCATACAT
* *
28536515 GCCAATCTGGTTAGCAACT-ATCATGCCCT-ACTAGTGGCCC
1 GCCAACCTGGTTAACAACTAAT-ATG-CCTAACTAGTGGCCC
28536555 GCCAACCTGGTTAACAACTAATATGCCTAACTAGTGG
1 GCCAACCTGGTTAACAACTAATATGCCTAACTAGTGG
28536592 TCCATTATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 3 0.09
40 28 0.85
41 2 0.06
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (40 bp):
GCCAACCTGGTTAACAACTAATATGCCTAACTAGTGGCCC
Found at i:28538379 original size:42 final size:42
Alignment explanation
Indices: 28538310--28538448 Score: 124
Period size: 42 Copynumber: 3.3 Consensus size: 42
28538300 TCGCTCACAC
* *
28538310 GAGCTTCTGTTTAA-CTTATATGAGTTTCCATTCAGCTCTATT
1 GAGCTTCTGTTTAACCCT-TATGGGTTTCCATTCAGCTCTATT
* *
28538352 GAGCTTCTGTTTAACCCTTATGGGTTTCCGTTCTA-CTCT-TAC
1 GAGCTTCTGTTTAACCCTTATGGGTTTCCATTC-AGCTCTAT-T
* * * * *
28538394 GAGCTTCCGTTCATCCCTTATGGGTTTCTATTTAGCTCTCA-T
1 GAGCTTCTGTTTAACCCTTATGGGTTTCCATTCAGCTCT-ATT
*
28538436 GAGCTTCTATTTA
1 GAGCTTCTGTTTA
28538449 GCCTTCGAGC
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
41 2 0.03
42 72 0.94
43 3 0.04
ACGTcount: A:0.17, C:0.23, G:0.16, T:0.44
Consensus pattern (42 bp):
GAGCTTCTGTTTAACCCTTATGGGTTTCCATTCAGCTCTATT
Found at i:28544620 original size:29 final size:29
Alignment explanation
Indices: 28544579--28544641 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
28544569 AAAACTTCTC
28544579 ACTC-TATTAACCAAGAAAGAATCACTAG
1 ACTCGTATTAACCAAGAAAGAATCACTAG
28544607 ACTCGTATTAACCAAGAAAGAATCACTAG
1 ACTCGTATTAACCAAGAAAGAATCACTAG
*
28544636 AGTCGT
1 ACTCGT
28544642 GAAAAATGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.22
Consensus pattern (29 bp):
ACTCGTATTAACCAAGAAAGAATCACTAG
Found at i:28548938 original size:17 final size:17
Alignment explanation
Indices: 28548918--28548990 Score: 57
Period size: 17 Copynumber: 4.5 Consensus size: 17
28548908 TATTTTAATC
28548918 AATTTAATATTAAATTT
1 AATTTAATATTAAATTT
28548935 AATTTAATACTT--ATCTT
1 AATTTAATA-TTAAAT-TT
* * **
28548952 -A-GTAGTATTTTA-TT
1 AATTTAATATTAAATTT
28548966 AATTTAATATTAAATTT
1 AATTTAATATTAAATTT
28548983 AATTTAAT
1 AATTTAAT
28548991 GTTTATCTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 14
0.68 0.10 0.22
Matches are distributed among these distances:
14 4 0.09
15 5 0.12
16 11 0.26
17 21 0.49
18 2 0.05
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (17 bp):
AATTTAATATTAAATTT
Found at i:28548980 original size:48 final size:48
Alignment explanation
Indices: 28548908--28549003 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
28548898 AAAATAATAT
28548908 TATTTTAATCAATTTAATATTAAATTTAATTTAATACTTATCTTAGTAG
1 TATTTTAATCAATTTAATATTAAATTTAATTTAATACTTATCTT-GTAG
* **
28548957 TATTTT-ATTAATTTAATATTAAATTTAATTTAATGTTTATCTTGTAG
1 TATTTTAATCAATTTAATATTAAATTTAATTTAATACTTATCTTGTAG
28549004 ATAAATGTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 4 0.09
48 34 0.77
49 6 0.14
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.54
Consensus pattern (48 bp):
TATTTTAATCAATTTAATATTAAATTTAATTTAATACTTATCTTGTAG
Found at i:28549432 original size:45 final size:46
Alignment explanation
Indices: 28549363--28549480 Score: 213
Period size: 45 Copynumber: 2.6 Consensus size: 46
28549353 AAGATTACTC
28549363 GTTTGATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTAC-AT
1 GTTTGATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTACAAT
*
28549408 GTTTTATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTACAAT
1 GTTTGATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTACAAT
28549454 -TTTGATTAAGTGTTTATTACTTTAGAT
1 GTTTGATTAAGTGTTTATTACTTTAGAT
28549481 ATCATAACCA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
45 68 0.97
46 2 0.03
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.44
Consensus pattern (46 bp):
GTTTGATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTACAAT
Found at i:28554080 original size:48 final size:48
Alignment explanation
Indices: 28554021--28554215 Score: 210
Period size: 48 Copynumber: 4.1 Consensus size: 48
28554011 AACAAATTTC
* * * * *
28554021 TCGGTGGCCTGCACACAGTCCGTACCACCTTTGTGTAATAACAGATTC
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGATTA
* * * * * *
28554069 TCGATGGCCTGCACATAGTTCGCGCCACCCTTGTATCTTAACAGGTTA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGATTA
* * * *
28554117 TTGGTGGCCTGCACACAGTCCTTGCCACCCTTGTATCATAATAGAATA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGATTA
* * * * *
28554165 TCGGTGGCCTGCTCACAGTTCGTGCCACCCTTATGTCATAACAGAATA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGATTA
28554213 TCG
1 TCG
28554216 ATGCGCATAG
Statistics
Matches: 119, Mismatches: 28, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 119 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (48 bp):
TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGATTA
Found at i:28554192 original size:96 final size:96
Alignment explanation
Indices: 28554023--28554196 Score: 240
Period size: 96 Copynumber: 1.8 Consensus size: 96
28554013 CAAATTTCTC
* * * * *
28554023 GGTGGCCTGCACACAGTCCGTACCACCTTTGTGTAATAACAGATTCTCGATGGCCTGCACATAGT
1 GGTGGCCTGCACACAGTCCGTACCACCCTTGTATAATAACAGAATATCGATGGCCTGCACACAGT
28554088 TCGCGCCACCCTTGTATCTTAACAGGTTATT
66 TCGCGCCACCCTTGTATCTTAACAGGTTATT
* * * * * *
28554119 GGTGGCCTGCACACAGTCCTTGCCACCCTTGTATCATAATAGAATATCGGTGGCCTGCTCACAGT
1 GGTGGCCTGCACACAGTCCGTACCACCCTTGTATAATAACAGAATATCGATGGCCTGCACACAGT
*
28554184 TCGTGCCACCCTT
66 TCGCGCCACCCTT
28554197 ATGTCATAAC
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 66 1.00
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (96 bp):
GGTGGCCTGCACACAGTCCGTACCACCCTTGTATAATAACAGAATATCGATGGCCTGCACACAGT
TCGCGCCACCCTTGTATCTTAACAGGTTATT
Found at i:28558137 original size:25 final size:25
Alignment explanation
Indices: 28558107--28558246 Score: 85
Period size: 25 Copynumber: 5.7 Consensus size: 25
28558097 GCACTCTCTT
*
28558107 GAGCCATATAATGGGAAGCTCATGT
1 GAGCCATATAATGGGAAGCTCATGA
* * * * **
28558132 GAGCCATGTAGTAGGAAGCTTATCC
1 GAGCCATATAATGGGAAGCTCATGA
** * *
28558157 GAGCTTTATAACGGGAAGCTCATAA
1 GAGCCATATAATGGGAAGCTCATGA
*
28558182 GAGTCATAT--TGAGGAAGCTCATGA
1 GAGCCATATAATG-GGAAGCTCATGA
* *
28558206 GAGCCA-AT-ATCGGGTAGCTTCA-AA
1 GAGCCATATAAT-GGGAAGC-TCATGA
28558230 GAGCCA-ATAATGGGAAG
1 GAGCCATATAATGGGAAG
28558247 ATCCGAATGG
Statistics
Matches: 86, Mismatches: 24, Indels: 11
0.71 0.20 0.09
Matches are distributed among these distances:
23 3 0.03
24 36 0.42
25 47 0.55
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (25 bp):
GAGCCATATAATGGGAAGCTCATGA
Found at i:28565203 original size:39 final size:40
Alignment explanation
Indices: 28564999--28565221 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
28564989 TTGAATGCTG
* * * * * *
28564999 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
28565039 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
28565079 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
28565119 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
28565159 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
28565198 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
28565222 TGAACGAGGA
Statistics
Matches: 163, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 36 0.22
40 119 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:28565241 original size:79 final size:80
Alignment explanation
Indices: 28565073--28565256 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
28565063 TGTGCGAGAT
* * *
28565073 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
** *
28565138 GCATTCGTGCGAGTT
66 GCATTCGAACGAGTG
* * * *
28565153 ATTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
*
28565217 GCATTTGAACGAG-G
66 GCATTCGAACGAGTG
* * *
28565231 AGCTATATCC-GGTTAAATCCTGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
28565257 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 28 0.32
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
GCATTCGAACGAGTG
Found at i:28565241 original size:119 final size:120
Alignment explanation
Indices: 28564999--28565256 Score: 256
Period size: 119 Copynumber: 2.2 Consensus size: 120
28564989 TTGAATGCTG
* * * *
28564999 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* * ** * *
28565064 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 GTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAA
* * * * *
28565119 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCTAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
28565181 TTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAA
* *
28565238 TCC-GGTTAAATCCTGAAGG
1 TCCGGGTTAAGTCCCGAAGG
28565257 TACGTGATTT
Statistics
Matches: 113, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
118 15 0.13
119 49 0.43
120 43 0.38
121 6 0.05
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAA
Found at i:28578358 original size:20 final size:20
Alignment explanation
Indices: 28578320--28578358 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
28578310 ATTATATATT
* *
28578320 TTTAAATATATATATAAAAA
1 TTTAAAAATATATAGAAAAA
*
28578340 TTTAAAAATATATCGAAAA
1 TTTAAAAATATATAGAAAA
28578359 CTAAAAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
TTTAAAAATATATAGAAAAA
Found at i:28578899 original size:20 final size:21
Alignment explanation
Indices: 28578864--28578903 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
28578854 AGTTATATTT
*
28578864 ATATTTAATTTAATTTTTAAA
1 ATATTTAATGTAATTTTTAAA
28578885 ATATTTAA-GTAATTTTTAA
1 ATATTTAATGTAATTTTTAA
28578904 TTTTTTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
ATATTTAATGTAATTTTTAAA
Found at i:28579878 original size:28 final size:28
Alignment explanation
Indices: 28579846--28579914 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
28579836 ACCTCATATT
28579846 TAATGATTTTTTTATGTAAATAAAATTA
1 TAATGATTTTTTTATGTAAATAAAATTA
*
28579874 TAATGGTTTTTTTATGTAAATAAAATTA
1 TAATGATTTTTTTATGTAAATAAAATTA
*
28579902 TAATGTTTTTTTT
1 TAATGATTTTTTT
28579915 TTATTTTGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (28 bp):
TAATGATTTTTTTATGTAAATAAAATTA
Found at i:28586095 original size:2 final size:2
Alignment explanation
Indices: 28586088--28586114 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
28586078 CTCTGCAAAA
28586088 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
28586115 AGCTTAAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:28590212 original size:14 final size:14
Alignment explanation
Indices: 28590202--28590254 Score: 88
Period size: 14 Copynumber: 3.8 Consensus size: 14
28590192 TACTATATTT
28590202 TATTTATTATATCA
1 TATTTATTATATCA
*
28590216 TATTTATCATATCA
1 TATTTATTATATCA
*
28590230 TATTTATCATATCA
1 TATTTATTATATCA
28590244 TATTTATTATA
1 TATTTATTATA
28590255 ATTAGAGAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTTATTATATCA
Found at i:28593979 original size:43 final size:43
Alignment explanation
Indices: 28593928--28594236 Score: 350
Period size: 43 Copynumber: 7.2 Consensus size: 43
28593918 CCAAAAAAAT
** *
28593928 GCCGCTAAAGACCAAGACCTTTAGCGGTACTTTTCCTACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * **
28593971 GCCGCTAAAGACCAAGATCTTCAACGGCGCTTTTCTTACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
*
28594014 GCAGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
28594057 GCCGCTATAGACCAAGACCTTTAGAGGCGCTTTT-CCAGAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* * ** **
28594099 GCCGCTATAGATCGCGACCTTTAGCGGCATTTTTCCCACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* **
28594142 GCCGCTATAGACCGCGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * * * * *
28594185 ACCACTAAAGATCACGACCTTTAGCAGCGCTTCTCGCAAAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
28594228 GCCGCTAAA
1 GCCGCTAAA
28594237 AACATAACCT
Statistics
Matches: 228, Mismatches: 37, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
42 35 0.15
43 193 0.85
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.21
Consensus pattern (43 bp):
GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:28594247 original size:128 final size:128
Alignment explanation
Indices: 28594008--28594249 Score: 308
Period size: 128 Copynumber: 1.9 Consensus size: 128
28593998 CGCTTTTCTT
* * *
28594008 ACAAACGCAGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGACCAAG
1 ACAAACGCAGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACACCACTAAAGACCAAG
* * * * * *
28594073 ACCTTTAGAGGCGCTTTTCCAGAAACGCCGCTATAGATCGCGACCTTTAGCGGCATTTTTCCC
66 ACCTTTAGAGGCGCTTCTCCAAAAACGCCGCTATAAAACACAACCTTTAGCGGCATTTTTCCC
* * ** * *
28594136 ACAAACGCCGCTATAGACCGCGACCTTTAGCGGCGCTTTTCCCACAAACACCACTAAAGATCACG
1 ACAAACGCAGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACACCACTAAAGACCAAG
*
28594201 ACCTTTAGCA-GCGCTTCTCGCAAAAACGCCGCTA-AAAACATAACCTTTA
66 ACCTTTAG-AGGCGCTTCTC-CAAAAACGCCGCTATAAAACACAACCTTTA
28594250 AAAAAAATTA
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
128 82 0.85
129 14 0.15
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (128 bp):
ACAAACGCAGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAACACCACTAAAGACCAAG
ACCTTTAGAGGCGCTTCTCCAAAAACGCCGCTATAAAACACAACCTTTAGCGGCATTTTTCCC
Found at i:28594365 original size:116 final size:116
Alignment explanation
Indices: 28594160--28594387 Score: 334
Period size: 116 Copynumber: 2.0 Consensus size: 116
28594150 AGACCGCGAC
* * * *
28594160 CTTTAGCGGCGCTTTTCCCACAAACACCACTAAAGATCACGACCTTTAGCAGCGCTTCTCGCAAA
1 CTTTAGCAGCGCTTTTCCCACAAACACCACTAAAGAACACAACCTTTAGCAGCGCTTCTCACAAA
*
28594225 AACGCCGCTAAAAACATAACCTTTAAAAAAAATTATTTTAATCAAATACTAT
66 AACGCCACTAAAAACATAACCTTT-AAAAAAATTATTTTAATCAAATACTAT
*** *
28594277 CTTTAGCAGCGCTTTTTTTACAAACGCCACTAAAGAACA-AACCTTTAGC-GACGCTTCTCACAA
1 CTTTAGCAGCGCTTTTCCCACAAACACCACTAAAGAACACAACCTTTAGCAG-CGCTTCTCACAA
*
28594340 AAATGCCACTAAAAACATAACCTTTAAAAAAATTATTTTAATCAAATA
65 AAACGCCACTAAAAACATAACCTTTAAAAAAATTATTTTAATCAAATA
28594388 ATATTTATTT
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
115 24 0.24
116 43 0.43
117 33 0.33
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (116 bp):
CTTTAGCAGCGCTTTTCCCACAAACACCACTAAAGAACACAACCTTTAGCAGCGCTTCTCACAAA
AACGCCACTAAAAACATAACCTTTAAAAAAATTATTTTAATCAAATACTAT
Found at i:28599493 original size:10 final size:10
Alignment explanation
Indices: 28599469--28599531 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
28599459 AAAATAAAAG
28599469 TTTAAAATATT
1 TTTAAAAT-TT
28599480 TTTAAAATTT
1 TTTAAAATTT
**
28599490 TTTAAAA-AA
1 TTTAAAATTT
* *
28599499 ATTAAAATCT
1 TTTAAAATTT
28599509 TTTAAAATTCAT
1 TTTAAAATT--T
28599521 TTTAAAATTT
1 TTTAAAATTT
28599531 T
1 T
28599532 AAATCACGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
9 6 0.14
10 18 0.43
11 8 0.19
12 10 0.24
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (10 bp):
TTTAAAATTT
Found at i:28599534 original size:30 final size:29
Alignment explanation
Indices: 28599463--28599534 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
28599453 ATTATAAAAA
* *
28599463 TAAAAGTTTAAAATATTTTTAAAATTTTT
1 TAAAAATTTAAAATACTTTTAAAATTTTT
*
28599492 TAAAAAAATTAAAAT-CTTTTAAAATTCATTT
1 T-AAAAATTTAAAATACTTTTAAAATT--TTT
*
28599523 TAAAATTTTAAA
1 TAAAAATTTAAA
28599535 TCACGAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 11 0.31
30 20 0.57
31 4 0.11
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (29 bp):
TAAAAATTTAAAATACTTTTAAAATTTTT
Found at i:28601105 original size:41 final size:41
Alignment explanation
Indices: 28601043--28601267 Score: 321
Period size: 41 Copynumber: 5.5 Consensus size: 41
28601033 AGATTTTATT
* *
28601043 ATTAGCGGCG-TTTTTGAAAAAACGCCGCTAAAGGCACGAGC
1 ATTAGCGGCGCTTTCT-CAAAAACGCCGCTAAAGGCACGAGC
* *
28601084 ATTAGCGGCGCTTTCTCAAAAACACTGCTAAAGGCACGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGCACGAGC
*
28601125 ATTAGTGGCGC-TTCTTCAAAAACGCCGCTAAAGGCACGAGC
1 ATTAGCGGCGCTTTC-TCAAAAACGCCGCTAAAGGCACGAGC
* *
28601166 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGCACGAGC
* *
28601207 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGC
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGCACGAGC
*
28601248 ATTAGCGGCGC-TCCTCAAAA
1 ATTAGCGGCGCTTTCTCAAAA
28601268 CTTTGAAAAC
Statistics
Matches: 170, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
40 11 0.06
41 152 0.89
42 7 0.04
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (41 bp):
ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGCACGAGC
Found at i:28601654 original size:22 final size:21
Alignment explanation
Indices: 28601603--28601659 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 21
28601593 ATTGAAATGA
* *
28601603 TAAAAAGTAAT-AAAA-TTAT
1 TAAAAAGTTATGAAAAGCTAT
* *
28601622 TAAAAATTTATTAAAAGCTAT
1 TAAAAAGTTATGAAAAGCTAT
28601643 TAAAAAAGTTATGAAAA
1 T-AAAAAGTTATGAAAA
28601660 ATTTATAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 9 0.30
20 4 0.13
21 4 0.13
22 13 0.43
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.32
Consensus pattern (21 bp):
TAAAAAGTTATGAAAAGCTAT
Found at i:28602008 original size:19 final size:19
Alignment explanation
Indices: 28601977--28602029 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
28601967 AAATTTAAAA
28601977 AATACTACTTTTATAAATTT
1 AATACT-CTTTTATAAATTT
* * *
28601997 TATACTCTTTTATCAGTTT
1 AATACTCTTTTATAAATTT
28602016 AATACT-TTTTATAA
1 AATACTCTTTTATAA
28602030 TTAAAAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 7 0.25
19 16 0.57
20 5 0.18
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.53
Consensus pattern (19 bp):
AATACTCTTTTATAAATTT
Found at i:28604305 original size:42 final size:41
Alignment explanation
Indices: 28604196--28604308 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 41
28604186 ATTTAATTAA
* *
28604196 TTTTTAAAATTTAAAAAATTCAAAAAA-TATAAAAAAAATT
1 TTTTTAAAATTTTAAAAATTTAAAAAATTATAAAAAAAATT
** * * *
28604236 TAATTAAAATTATTCAAAA-GTATAAAAATTATAAAAAATATT
1 TTTTTAAAATT-TTAAAAATTTA-AAAAATTATAAAAAAAATT
*
28604278 TTTTTAAATATTTTTAAAATTTAAAAAATTA
1 TTTTTAAA-ATTTTAAAAATTTAAAAAATTA
28604309 ACTAAATGCT
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
40 10 0.18
41 10 0.18
42 32 0.56
43 5 0.09
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.40
Consensus pattern (41 bp):
TTTTTAAAATTTTAAAAATTTAAAAAATTATAAAAAAAATT
Found at i:28604446 original size:4 final size:4
Alignment explanation
Indices: 28604437--28604466 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
28604427 TTTAAATGTT
28604437 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
28604467 GAGATAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:28612891 original size:27 final size:27
Alignment explanation
Indices: 28612861--28613038 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
28612851 ATATTGAGTC
* * * *
28612861 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
28612888 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
28612915 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
28612943 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
28612970 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
28612997 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
28613024 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
28613039 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:28613000 original size:82 final size:81
Alignment explanation
Indices: 28612882--28613037 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
28612872 TGCTATATAA
* *
28612882 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
28612947 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
28612964 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
28613028 CACTTAGTGC
65 CACTTAGTGC
28613038 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:28620949 original size:27 final size:27
Alignment explanation
Indices: 28620919--28621096 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
28620909 ATATTGAGTC
* * * *
28620919 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
28620946 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
28620973 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
28621001 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
28621028 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
28621055 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
28621082 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
28621097 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:28621058 original size:82 final size:81
Alignment explanation
Indices: 28620940--28621095 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
28620930 TGCTATATAA
* *
28620940 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
28621005 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
28621022 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
28621086 CACTTAGTGC
65 CACTTAGTGC
28621096 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:28639393 original size:21 final size:21
Alignment explanation
Indices: 28639354--28639393 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
28639344 AGAATACAAT
*
28639354 TTTGTGCTATTTTACATTAAA
1 TTTGTGCTAATTTACATTAAA
28639375 TTTGTGCATAATTTA-ATTA
1 TTTGTGC-TAATTTACATTA
28639394 TTTTATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (21 bp):
TTTGTGCTAATTTACATTAAA
Found at i:28646625 original size:71 final size:71
Alignment explanation
Indices: 28646543--28646780 Score: 413
Period size: 71 Copynumber: 3.4 Consensus size: 71
28646533 ATGAATTTCC
* *
28646543 ATCCAATTAATACGTGAACCTAATTCCTTAGGCATTCACAGGTATTAATAATCGCTTCACGTTTG
1 ATCCAATTAATACGTGAACCTAATTCCTTAGGCATTCACACGTACTAATAATCGCTTCACGTTTG
28646608 GTCATA
66 GTCATA
* * * *
28646614 ATCCAATTAATACGTGAACCTAATTCCTTAAGCATTCACATGTGCTAATAATAGCTTCACGTTTG
1 ATCCAATTAATACGTGAACCTAATTCCTTAGGCATTCACACGTACTAATAATCGCTTCACGTTTG
28646679 GTCATA
66 GTCATA
*
28646685 ATCCAATTAATACGTGAACCTTATTCCTTAGGCATTCACACGTACTAATAATCGCTTCACGTTTG
1 ATCCAATTAATACGTGAACCTAATTCCTTAGGCATTCACACGTACTAATAATCGCTTCACGTTTG
28646750 GTCATA
66 GTCATA
28646756 ATCCAATTAATACGTGAACCTAATT
1 ATCCAATTAATACGTGAACCTAATT
28646781 TATGCTTGAT
Statistics
Matches: 156, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 156 1.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.34
Consensus pattern (71 bp):
ATCCAATTAATACGTGAACCTAATTCCTTAGGCATTCACACGTACTAATAATCGCTTCACGTTTG
GTCATA
Found at i:28647921 original size:16 final size:17
Alignment explanation
Indices: 28647900--28647934 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
28647890 AATTGATTTA
*
28647900 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
28647916 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
28647933 AA
1 AA
28647935 CCCAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:28658529 original size:18 final size:18
Alignment explanation
Indices: 28658506--28658565 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
28658496 ATAGAGATTA
*
28658506 GATATGAAGTTTTGTTAT
1 GATATGAAGTTTTGATAT
* * * *
28658524 GATATGAAGATCTAATCT
1 GATATGAAGTTTTGATAT
28658542 GATATTG-AGTTTTGATAT
1 GATA-TGAAGTTTTGATAT
28658560 GATATG
1 GATATG
28658566 GAATTTTGTT
Statistics
Matches: 32, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
17 2 0.06
18 28 0.88
19 2 0.06
ACGTcount: A:0.32, C:0.03, G:0.22, T:0.43
Consensus pattern (18 bp):
GATATGAAGTTTTGATAT
Found at i:28679602 original size:48 final size:47
Alignment explanation
Indices: 28679503--28679677 Score: 176
Period size: 48 Copynumber: 3.6 Consensus size: 47
28679493 GGGAATGAGA
**
28679503 TCCCATGTAAGACCATGT-TGGGACATGCATGGCATTATTGAGTTATGAGAGG
1 TCCCATGTAAGACCATGTCT-GGACATGCATGGC---ACCGAG--ATGAGAGG
*
28679555 TCCCATGTAAGACCATGTCTGGACATGGCTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGACAT-GCATGGCACCGAGATGAGAGG
** * **
28679603 TCCCCCGTAAGACCATGTCTGGACATGCATGGCACCGATAT-AGAAC
1 TCCCATGTAAGACCATGTCTGGACATGCATGGCACCGAGATGAGAGG
* *
28679649 T-CCATGTAAGACCATATCTGGATATGCAT
1 TCCCATGTAAGACCATGTCTGGACATGCAT
28679678 TGCAGTACAG
Statistics
Matches: 108, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
45 24 0.22
46 4 0.04
47 13 0.12
48 32 0.30
50 4 0.04
52 24 0.22
53 7 0.06
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (47 bp):
TCCCATGTAAGACCATGTCTGGACATGCATGGCACCGAGATGAGAGG
Found at i:28679676 original size:45 final size:47
Alignment explanation
Indices: 28679503--28679717 Score: 160
Period size: 45 Copynumber: 4.6 Consensus size: 47
28679493 GGGAATGAGA
** **
28679503 TCCCATGTAAGACCATGT-TGGGACATGCATGGCATTATTGAGTTATGAGAGG
1 TCCCATGTAAGACCATGTCT-GGACATGCATGGC---ACCGAG--ATGAGAAC
* **
28679555 TCCCATGTAAGACCATGTCTGGACATGGCTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGACAT-GCATGGCACCGAGATGAGAAC
** *
28679603 TCCCCCGTAAGACCATGTCTGGACATGCATGGCACCGATAT-AGAAC
1 TCCCATGTAAGACCATGTCTGGACATGCATGGCACCGAGATGAGAAC
* * * *
28679649 T-CCATGTAAGACCATATCTGGATATGCATTGCA--GTACA-GA-AAC
1 TCCCATGTAAGACCATGTCTGGACATGCATGGCACCG-AGATGAGAAC
28679692 ATCCCATGT-AGA-CATGTCTGGACATG
1 -TCCCATGTAAGACCATGTCTGGACATG
28679718 GCTTTGGCAT
Statistics
Matches: 140, Mismatches: 17, Indels: 21
0.79 0.10 0.12
Matches are distributed among these distances:
43 16 0.11
44 7 0.05
45 33 0.24
46 4 0.03
47 13 0.09
48 32 0.23
50 4 0.03
52 24 0.17
53 7 0.05
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (47 bp):
TCCCATGTAAGACCATGTCTGGACATGCATGGCACCGAGATGAGAAC
Found at i:28679948 original size:20 final size:20
Alignment explanation
Indices: 28679923--28679961 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
28679913 ATGATTATTT
28679923 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
28679943 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
28679962 GAAGAAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:28687372 original size:19 final size:19
Alignment explanation
Indices: 28687348--28687384 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
28687338 TGAGTTATTT
28687348 AAGTAAGCA-AGTAAGTAAC
1 AAGTAAG-AGAGTAAGTAAC
28687367 AAGTAAGAGAGTAAGTAA
1 AAGTAAGAGAGTAAGTAA
28687385 AGAAGAAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.54, C:0.05, G:0.24, T:0.16
Consensus pattern (19 bp):
AAGTAAGAGAGTAAGTAAC
Found at i:28711613 original size:34 final size:34
Alignment explanation
Indices: 28711569--28711636 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
28711559 GCACAGTTAA
* *
28711569 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTA-CAGTG
*
28711604 ACAGT-TTGGGCCTTAGCCCATCTCAGTACAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
28711637 TCAAAAATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTACAGTG
Found at i:28715740 original size:50 final size:50
Alignment explanation
Indices: 28715685--28715816 Score: 176
Period size: 50 Copynumber: 2.6 Consensus size: 50
28715675 TATTGAGGTT
* * *
28715685 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCATGGGCACCGAG
* *
28715735 ATGAGAGGTCCC-TCGTAAGACCATGTCTAGGACATAGCATGGGCACCGAT
1 ATGAGAGGTCCCAT-GTAAGACCATGTCTGGGACATAGCATGGGCACCGAG
** *
28715785 ATGAGAATTCCCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGA
28715817 TATGACATTA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 69 0.97
51 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCATGGGCACCGAG
Found at i:28723528 original size:50 final size:50
Alignment explanation
Indices: 28723362--28723528 Score: 163
Period size: 50 Copynumber: 3.2 Consensus size: 50
28723352 GGGAATGAGA
* **
28723362 TCCCATGTAAGACCATGTCTAGGACACGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACACGGCATTGGC---ACCGA---TATGAGAGG
* * * * *
28723418 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCCAGATGAGGGG
1 TCCCATGTAAGACCATGTCTGGGACACGGCATTGGCACCGATATGAGAGG
** * **
28723468 TCCCCCGTAAGACCATGTCTGGGACACGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACACGGCATTGGCACCGATATGAGAGG
28723518 TCCCATGTAAG
1 TCCCATGTAAG
28723529 GCTATATCTA
Statistics
Matches: 91, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
50 56 0.62
53 2 0.02
56 33 0.36
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACACGGCATTGGCACCGATATGAGAGG
Found at i:28723831 original size:20 final size:20
Alignment explanation
Indices: 28723806--28723854 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
28723796 TGAGTTATTT
*
28723806 AAGTAAGCAAGTAAGTGAAC
1 AAGTAAGCAAGTAAGTAAAC
*
28723826 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
28723846 AAG-AAGCAA
1 AAGTAAGCAA
28723855 AGACCATGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.55, C:0.06, G:0.27, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:28732076 original size:44 final size:43
Alignment explanation
Indices: 28732028--28732408 Score: 476
Period size: 44 Copynumber: 8.7 Consensus size: 43
28732018 TTCGATCTGC
* * *
28732028 TCCACTACTGCTT-AGGGAGACAGGATCTACAATCTTCAACCTAT
1 TCCACTGCTG-TTCAGGGAGATAGGA-CTGCAATCTTCAACCTAT
* * *
28732072 TCCACTACTATTCAGGGAGATAGGACTTGTAATCTTCAACCTAT
1 TCCACTGCTGTTCAGGGAGATAGGAC-TGCAATCTTCAACCTAT
* * *
28732116 TCCACTGTTGTTCAGGGAGATAGAACTTGTAATCTTCAACCTAT
1 TCCACTGCTGTTCAGGGAGATAGGAC-TGCAATCTTCAACCTAT
* *
28732160 TCCACTGCTGTTCAGGGAGATAGGAATTGTAATCTTCAACCTAT
1 TCCACTGCTGTTCAGGGAGATAGG-ACTGCAATCTTCAACCTAT
* *
28732204 TCCAACTGCTGTTCAGGGAGATAAGACATGCAATCTTCCACCTAT
1 TCC-ACTGCTGTTCAGGGAGATAGGAC-TGCAATCTTCAACCTAT
* *
28732249 TCCACTGCTGTTCAGGGAGATAGGATATACAATCTTCAACCTAT
1 TCCACTGCTGTTCAGGGAGATAGGA-CTGCAATCTTCAACCTAT
*
28732293 TCCACTGCTGTTCAGGGAGATAGGACTTGCTATCTTCAACCTAT
1 TCCACTGCTGTTCAGGGAGATAGGAC-TGCAATCTTCAACCTAT
* * *
28732337 TCCACTGTTGTTCAGGGAGATAGGACATACAATCTTCCACCTAT
1 TCCACTGCTGTTCAGGGAGATAGGAC-TGCAATCTTCAACCTAT
* *
28732381 TCCACTGCTGATCAGGGAGATCGGACTG
1 TCCACTGCTGTTCAGGGAGATAGGACTG
28732409 GCAGCTTAAA
Statistics
Matches: 299, Mismatches: 31, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
43 4 0.01
44 256 0.86
45 39 0.13
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (43 bp):
TCCACTGCTGTTCAGGGAGATAGGACTGCAATCTTCAACCTAT
Found at i:28732337 original size:177 final size:176
Alignment explanation
Indices: 28732057--28732401 Score: 525
Period size: 177 Copynumber: 2.0 Consensus size: 176
28732047 ACAGGATCTA
**
28732057 CAATCTTCAACCTATTCCACTACTATTCAGGGAGATAGGACTTGTAATCTTCAACCTATTCCACT
1 CAATCTTCAACCTATTCCACTACTATTCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
*
28732122 GTTGTTCAGGGAGATAGAACTTGTAATCTTCAACCTATTCCACTGCTGTTCAGGGAGATAGGA-A
66 GCTGTTCAGGGAGATAGAACTTGTAATCTTCAACCTATTCCACTGCTGTTCAGGGAGATAGGACA
** *
28732186 TTGTAATCTTCAACCTATTCCAACTGCTGTTCAGGGAGATAAGACATG
131 -TACAATCTTCAACCTATTCC-ACTGCTGATCAGGGAGATAAGACATG
* * *
28732234 CAATCTTCCACCTATTCCACTGCTGTTCAGGGAGATAGGA-TATACAATCTTCAACCTATTCCAC
1 CAATCTTCAACCTATTCCACTACTATTCAGGGAGATAGGACT-TACAATCTTCAACCTATTCCAC
* *
28732298 TGCTGTTCAGGGAGATAGGACTTGCT-ATCTTCAACCTATTCCACTGTTGTTCAGGGAGATAGGA
65 TGCTGTTCAGGGAGATAGAACTTG-TAATCTTCAACCTATTCCACTGCTGTTCAGGGAGATAGGA
*
28732362 CATACAATCTTCCACCTATTCCACTGCTGATCAGGGAGAT
129 CATACAATCTTCAACCTATTCCACTGCTGATCAGGGAGAT
28732402 CGGACTGGCA
Statistics
Matches: 153, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
176 18 0.12
177 133 0.87
178 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (176 bp):
CAATCTTCAACCTATTCCACTACTATTCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
GCTGTTCAGGGAGATAGAACTTGTAATCTTCAACCTATTCCACTGCTGTTCAGGGAGATAGGACA
TACAATCTTCAACCTATTCCACTGCTGATCAGGGAGATAAGACATG
Found at i:28733456 original size:22 final size:22
Alignment explanation
Indices: 28733431--28733503 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
28733421 GATTGGGAAG
28733431 GTGTATCTTGGAAAAGAATGAA
1 GTGTATCTTGGAAAAGAATGAA
*** * *
28733453 GTGT-TCCAAGAAATTGATTGGGAA
1 GTGTATCTTGGAAA-AGAAT--GAA
28733477 TGTGTATCTTGGAAAAGAATGAA
1 -GTGTATCTTGGAAAAGAATGAA
28733500 GTGT
1 GTGT
28733504 TCCAAGAATA
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
21 6 0.17
22 11 0.31
23 3 0.08
24 3 0.08
25 7 0.19
26 6 0.17
ACGTcount: A:0.36, C:0.05, G:0.29, T:0.30
Consensus pattern (22 bp):
GTGTATCTTGGAAAAGAATGAA
Found at i:28733467 original size:47 final size:47
Alignment explanation
Indices: 28733413--28733511 Score: 189
Period size: 47 Copynumber: 2.1 Consensus size: 47
28733403 ATAGATAACA
28733413 AAGAAATTGATTGGGAAGGTGTATCTTGGAAAAGAATGAAGTGTTCC
1 AAGAAATTGATTGGGAAGGTGTATCTTGGAAAAGAATGAAGTGTTCC
*
28733460 AAGAAATTGATTGGGAATGTGTATCTTGGAAAAGAATGAAGTGTTCC
1 AAGAAATTGATTGGGAAGGTGTATCTTGGAAAAGAATGAAGTGTTCC
28733507 AAGAA
1 AAGAA
28733512 TAACAAATTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.38, C:0.06, G:0.28, T:0.27
Consensus pattern (47 bp):
AAGAAATTGATTGGGAAGGTGTATCTTGGAAAAGAATGAAGTGTTCC
Found at i:28734490 original size:14 final size:14
Alignment explanation
Indices: 28734467--28734500 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
28734457 ATCAATGTTA
* *
28734467 TTCCAGATAAGGTC
1 TTCCACATAAGATC
28734481 TTCCACATAAGATC
1 TTCCACATAAGATC
28734495 TTCCAC
1 TTCCAC
28734501 TTTCATTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (14 bp):
TTCCACATAAGATC
Found at i:28740565 original size:22 final size:22
Alignment explanation
Indices: 28740517--28740559 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
28740507 TAAAAAGAAT
28740517 TAAAATAATAGTACATAGTAAAA
1 TAAAATAATAGTACATAG-AAAA
28740540 TAAAATAAT-GTACATA-AAAA
1 TAAAATAATAGTACATAGAAAA
28740560 GGTAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
22 7 0.35
23 9 0.45
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.26
Consensus pattern (22 bp):
TAAAATAATAGTACATAGAAAA
Found at i:28745123 original size:39 final size:38
Alignment explanation
Indices: 28745080--28745157 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
28745070 ATTTACACAT
* *
28745080 ATAATCACCTAACATACAAGTAGATATCACAATACTCAA
1 ATAATCACATAACATACAAGCAGATATC-CAATACTCAA
** *
28745119 ATAATCACATAACATTTAAGCATATATCCAATACTCAA
1 ATAATCACATAACATACAAGCAGATATCCAATACTCAA
28745157 A
1 A
28745158 AACATCTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
38 11 0.32
39 23 0.68
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.26
Consensus pattern (38 bp):
ATAATCACATAACATACAAGCAGATATCCAATACTCAA
Found at i:28751323 original size:23 final size:23
Alignment explanation
Indices: 28751293--28751417 Score: 76
Period size: 23 Copynumber: 5.3 Consensus size: 23
28751283 TGTACAAAAA
28751293 TGGACAGCATTTAAGCACCAATT
1 TGGACAGCATTTAAGCACCAATT
* *
28751316 TGGACAGCATTAATATACTCAACAA--
1 TGGACAGCATT--TA-A-GCACCAATT
* *
28751341 TGGACAGCAATTAAGCATCAATT
1 TGGACAGCATTTAAGCACCAATT
* * * **
28751364 TGGATAGCATTAATATGCTA-AAAAA
1 TGGACAGCATT--TAAGC-ACCAATT
*
28751389 TGGACAGCATTTAAGCACTAATT
1 TGGACAGCATTTAAGCACCAATT
28751412 TGGACA
1 TGGACA
28751418 ACATCTTATC
Statistics
Matches: 76, Mismatches: 16, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
21 5 0.07
22 2 0.03
23 34 0.45
25 28 0.37
26 2 0.03
27 5 0.07
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (23 bp):
TGGACAGCATTTAAGCACCAATT
Found at i:28751343 original size:48 final size:48
Alignment explanation
Indices: 28751288--28751417 Score: 197
Period size: 48 Copynumber: 2.7 Consensus size: 48
28751278 TGATTTGTAC
*
28751288 AAAAATGGACAGCATTTAAGCACCAATTTGGACAGCATTAATATACTC
1 AAAAATGGACAGCATTTAAGCACCAATTTGGACAGCATTAATATACTA
* * * * *
28751336 AACAATGGACAGCAATTAAGCATCAATTTGGATAGCATTAATATGCTA
1 AAAAATGGACAGCATTTAAGCACCAATTTGGACAGCATTAATATACTA
*
28751384 AAAAATGGACAGCATTTAAGCACTAATTTGGACA
1 AAAAATGGACAGCATTTAAGCACCAATTTGGACA
28751418 ACATCTTATC
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.25
Consensus pattern (48 bp):
AAAAATGGACAGCATTTAAGCACCAATTTGGACAGCATTAATATACTA
Found at i:28753128 original size:20 final size:21
Alignment explanation
Indices: 28753079--28753130 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 21
28753069 AAGATGATAC
*
28753079 ATTTACTTAATT--TTACTTA
1 ATTTACTTATTTAATTACTTA
*
28753098 ATTTA-TCATTTAATTAC-TA
1 ATTTACTTATTTAATTACTTA
28753117 ATTTACTTATTTAA
1 ATTTACTTATTTAA
28753131 CCATTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 4 0.15
19 12 0.44
20 11 0.41
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTTACTTATTTAATTACTTA
Found at i:28756994 original size:20 final size:20
Alignment explanation
Indices: 28756969--28757007 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
28756959 TTCTGGGTGT
28756969 TCTACCTCTAACTGCAGTGG
1 TCTACCTCTAACTGCAGTGG
28756989 TCTACCTCTAACTGCAGTG
1 TCTACCTCTAACTGCAGTG
28757008 TTACTCGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.31
Consensus pattern (20 bp):
TCTACCTCTAACTGCAGTGG
Found at i:28759289 original size:23 final size:23
Alignment explanation
Indices: 28759263--28759362 Score: 96
Period size: 23 Copynumber: 4.3 Consensus size: 23
28759253 TGTACAAAAA
*
28759263 TGGACAACATTTAAGCACCAATT
1 TGGACAGCATTTAAGCACCAATT
* *
28759286 TGGACAGCATTAATATACTCAACAA--
1 TGGACAGCATT--TA-A-GCACCAATT
* *
28759311 TGGACAGCAATTAAGCATCAATT
1 TGGACAGCATTTAAGCACCAATT
*
28759334 TGGACAGCATTTAAGCACTAATT
1 TGGACAGCATTTAAGCACCAATT
28759357 TGGACA
1 TGGACA
28759363 ACATCTTATC
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
21 5 0.08
22 1 0.02
23 38 0.61
25 12 0.19
26 1 0.02
27 5 0.08
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (23 bp):
TGGACAGCATTTAAGCACCAATT
Found at i:28760006 original size:42 final size:41
Alignment explanation
Indices: 28759944--28760022 Score: 113
Period size: 42 Copynumber: 1.9 Consensus size: 41
28759934 ATGTTATAAT
* *
28759944 ATATCGATGCCATTATCCCAGACAGGGTTTTACACAAAATC
1 ATATCGATGCCAATATCCCAGACAGGGTCTTACACAAAATC
* *
28759985 ATATGCGATGCCAATGTCCCAGACATGGTCTTACACAA
1 ATAT-CGATGCCAATATCCCAGACAGGGTCTTACACAA
28760023 CATACGTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 4 0.12
42 29 0.88
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (41 bp):
ATATCGATGCCAATATCCCAGACAGGGTCTTACACAAAATC
Found at i:28761602 original size:9 final size:9
Alignment explanation
Indices: 28761578--28761614 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
28761568 TGAGTTTTCG
*
28761578 AATTCAAAT
1 AATTCGAAT
*
28761587 AACTCGAAT
1 AATTCGAAT
28761596 AATTCGAAT
1 AATTCGAAT
28761605 AATTCGAAT
1 AATTCGAAT
28761614 A
1 A
28761615 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:28767626 original size:89 final size:89
Alignment explanation
Indices: 28767520--28767697 Score: 320
Period size: 89 Copynumber: 2.0 Consensus size: 89
28767510 CTTTATTAAA
*
28767520 AAATTTATAGAAACTTTATGGTTAACATTTCTCAATAAAAGCACAATTTACATGGCTCTTTTCTA
1 AAATTGATAGAAACTTTATGGTTAACATTTCTCAATAAAAGCACAATTTACATGGCTCTTTTCTA
*
28767585 GTGGATGAAACGGACGGTGGCTGC
66 GTGGATAAAACGGACGGTGGCTGC
*
28767609 AAATTGATAGAAACTTTATGGTTACCATTTCTCAATAAAAGCACAATTTACATGGCTCTTTTCTA
1 AAATTGATAGAAACTTTATGGTTAACATTTCTCAATAAAAGCACAATTTACATGGCTCTTTTCTA
*
28767674 GTGGATAAAATGGACGGTGGCTGC
66 GTGGATAAAACGGACGGTGGCTGC
28767698 CCCTAATTAA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (89 bp):
AAATTGATAGAAACTTTATGGTTAACATTTCTCAATAAAAGCACAATTTACATGGCTCTTTTCTA
GTGGATAAAACGGACGGTGGCTGC
Found at i:28776056 original size:20 final size:20
Alignment explanation
Indices: 28776031--28776071 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
28776021 TAAAATGTAA
28776031 AAATAT-TTTTAAGATTTTTT
1 AAATATATTTT-AGATTTTTT
*
28776051 AAATATATTTTATATTTTTT
1 AAATATATTTTAGATTTTTT
28776071 A
1 A
28776072 GAATTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
AAATATATTTTAGATTTTTT
Found at i:28782158 original size:20 final size:22
Alignment explanation
Indices: 28782135--28782179 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
28782125 TAAAAAGTAA
*
28782135 AAATTAGAAA-ATAAA-AAAAT
1 AAATTAGAAAGAAAAATAAAAT
*
28782155 AAATTTGAAAGAAAAATAAAAT
1 AAATTAGAAAGAAAAATAAAAT
28782177 AAA
1 AAA
28782180 AAGTTCGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (22 bp):
AAATTAGAAAGAAAAATAAAAT
Found at i:28783018 original size:4 final size:4
Alignment explanation
Indices: 28783002--28783033 Score: 55
Period size: 4 Copynumber: 7.8 Consensus size: 4
28782992 GTAAGGGCAG
28783002 CATA CATTA CATA CATA CATA CATA CATA CAT
1 CATA CA-TA CATA CATA CATA CATA CATA CAT
28783034 TCACATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (4 bp):
CATA
Found at i:28794994 original size:18 final size:18
Alignment explanation
Indices: 28794945--28795021 Score: 59
Period size: 18 Copynumber: 4.3 Consensus size: 18
28794935 TTGTCCCTTA
*
28794945 TTCCTCACCTACATCTTC
1 TTCCTCACCTATATCTTC
* * *
28794963 TTCATCGATC-ATATCTTG
1 TTCCTC-ACCTATATCTTC
*
28794981 TTCCTCACCTATATCTTT
1 TTCCTCACCTATATCTTC
* *
28794999 TTCATCAGCC-ACATCTTC
1 TTCCTCA-CCTATATCTTC
28795017 TTCCT
1 TTCCT
28795022 TATTTGCGCT
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
17 2 0.04
18 39 0.87
19 4 0.09
ACGTcount: A:0.18, C:0.35, G:0.04, T:0.43
Consensus pattern (18 bp):
TTCCTCACCTATATCTTC
Found at i:28795015 original size:36 final size:36
Alignment explanation
Indices: 28794945--28795021 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 36
28794935 TTGTCCCTTA
* * *
28794945 TTCCTCACCTACATCTTCTTCATCGATCATATCTTG
1 TTCCTCACCTACATCTTCTTCATCGACCACATCTTC
* *
28794981 TTCCTCACCTATATCTTTTTCATC-AGCCACATCTTC
1 TTCCTCACCTACATCTTCTTCATCGA-CCACATCTTC
28795017 TTCCT
1 TTCCT
28795022 TATTTGCGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 1 0.03
36 34 0.97
ACGTcount: A:0.18, C:0.35, G:0.04, T:0.43
Consensus pattern (36 bp):
TTCCTCACCTACATCTTCTTCATCGACCACATCTTC
Found at i:28801416 original size:20 final size:20
Alignment explanation
Indices: 28801391--28801431 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
28801381 GCGTTTACTT
28801391 AAAGGTCAAGTCCCTTCAAA
1 AAAGGTCAAGTCCCTTCAAA
28801411 AAAGGTCAAGTCCCTTCAAA
1 AAAGGTCAAGTCCCTTCAAA
28801431 A
1 A
28801432 GCTCGGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (20 bp):
AAAGGTCAAGTCCCTTCAAA
Done.