Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 104 of 221
Found at i:31998573 original size:11 final size:11
Alignment explanation
Indices: 31998558--31998668 Score: 78
Period size: 11 Copynumber: 10.6 Consensus size: 11
31998548 AAAAACTTAA
31998558 AAAAAGTATTTT
1 AAAAA-TATTTT
31998570 AAAAATATTTT
1 AAAAATATTTT
31998581 --AAA-A--TT
1 AAAAATATTTT
*
31998587 AAAAAAATTTT
1 AAAAATATTTT
31998598 AAAAAGTATTTT
1 AAAAA-TATTTT
31998610 AAAAATATTTT
1 AAAAATATTTT
*
31998621 --AAA-A-TTA
1 AAAAATATTTT
* **
31998628 AAAAAAATTAA
1 AAAAATATTTT
31998639 AAAAAGTATTTT
1 AAAAA-TATTTT
*
31998651 AAAAGTATTTT
1 AAAAATATTTT
31998662 AAAAATA
1 AAAAATA
31998669 AAAAAATAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 23
0.72 0.07 0.21
Matches are distributed among these distances:
6 2 0.03
7 2 0.03
8 5 0.06
9 10 0.12
10 1 0.01
11 38 0.47
12 22 0.28
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:31998602 original size:40 final size:40
Alignment explanation
Indices: 31998533--31998680 Score: 226
Period size: 41 Copynumber: 3.6 Consensus size: 40
31998523 ACCAAAAATT
31998533 TATTTTAAAAATTAAAAAAACTTAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATTAAAAAAA-TTAAAAAAAGTATTTTAAAAA
**
31998575 TATTTTAAAATTAAAAAAATTTTAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAA
*
31998615 TATTTTAAAATTAAAAAAAATTAAAAAAAGTATTTTAAAAG
1 TATTTTAAAATT-AAAAAAATTAAAAAAAGTATTTTAAAAA
*
31998656 TATTTTAAAAATAAAAAAA-TAAAAA
1 TATTTTAAAATTAAAAAAATTAAAAA
31998681 TATTTATTAT
Statistics
Matches: 99, Mismatches: 6, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
39 6 0.06
40 38 0.38
41 49 0.49
42 6 0.06
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (40 bp):
TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:32000986 original size:14 final size:14
Alignment explanation
Indices: 32000967--32001005 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
32000957 AATCGTTTTC
32000967 CAAAAAAAAAAAGAA
1 CAAAAAAAAAAA-AA
32000982 CAAAAGAAAAAAAAA
1 CAAAA-AAAAAAAAA
32000997 CAAAGAAAA
1 CAAA-AAAA
32001006 GGGAAGAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (14 bp):
CAAAAAAAAAAAAA
Found at i:32003164 original size:22 final size:22
Alignment explanation
Indices: 32003122--32003166 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
32003112 ACTTTACTTG
* *
32003122 AAAAAACTCATCAAAAGAGGAT
1 AAAAAACTCATAAAAAAAGGAT
32003144 AAAAAA-TCATAAATAAAAGGAT
1 AAAAAACTCATAAA-AAAAGGAT
32003166 A
1 A
32003167 TTTCACTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.64, C:0.09, G:0.11, T:0.16
Consensus pattern (22 bp):
AAAAAACTCATAAAAAAAGGAT
Found at i:32008488 original size:19 final size:19
Alignment explanation
Indices: 32008464--32008525 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
32008454 GAGATCTCAG
32008464 AGTTTGTATCAAAATGTTT
1 AGTTTGTATCAAAATGTTT
* *
32008483 AGTTTG--CCAATAA-GTTAA
1 AGTTTGTATCAA-AATGTT-T
*
32008501 AGTTTGTATCGAAATGTTT
1 AGTTTGTATCAAAATGTTT
32008520 AGTTTG
1 AGTTTG
32008526 CCAATAAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
17 6 0.18
18 8 0.24
19 14 0.42
20 5 0.15
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (19 bp):
AGTTTGTATCAAAATGTTT
Found at i:32008505 original size:37 final size:37
Alignment explanation
Indices: 32008464--32008539 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
32008454 GAGATCTCAG
32008464 AGTTTGTATCAAAATGTTTAGTTTGCCAATAAGTTAA
1 AGTTTGTATCAAAATGTTTAGTTTGCCAATAAGTTAA
*
32008501 AGTTTGTATCGAAATGTTTAGTTTGCCAATAAGTTAA
1 AGTTTGTATCAAAATGTTTAGTTTGCCAATAAGTTAA
32008538 AG
1 AG
32008540 CCAAGCATCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.39
Consensus pattern (37 bp):
AGTTTGTATCAAAATGTTTAGTTTGCCAATAAGTTAA
Found at i:32018908 original size:17 final size:16
Alignment explanation
Indices: 32018886--32018929 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
32018876 TGAAATTTTT
32018886 TTTATATGTTTTATAAA
1 TTTATAT-TTTTATAAA
*
32018903 TTTATATATTTATAAA
1 TTTATATTTTTATAAA
*
32018919 ATTATATTTTT
1 TTTATATTTTT
32018930 TTAATTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TTTATATTTTTATAAA
Found at i:32019079 original size:17 final size:16
Alignment explanation
Indices: 32019057--32019100 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
32019047 TGAAAGAATT
*
32019057 TTTATATGTTTTATAAA
1 TTTATAT-TTTTAAAAA
*
32019074 TTTATATATTTAAAAA
1 TTTATATTTTTAAAAA
*
32019090 ATTATATTTTT
1 TTTATATTTTT
32019101 TAATTTTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 16 0.70
17 7 0.30
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
TTTATATTTTTAAAAA
Found at i:32019133 original size:170 final size:171
Alignment explanation
Indices: 32018860--32019210 Score: 598
Period size: 170 Copynumber: 2.1 Consensus size: 171
32018850 AGACACCATT
* *** *
32018860 TGTTTAGGTTCATTCTTGAAATTTTTTTTATATGTTTTATAAATTTATATATTTATAAAATTATA
1 TGTTTAGGTTAATTCTTGAAAGAATTTTTATATGTTTTATAAATTTATATATTTAAAAAATTATA
32018925 TTTTTTTAATTTTTAAATAATAATAAAAAAGCTAATATCTTAT-AAGTGTTTGAAAAAATATAAA
66 TTTTTTTAATTTTTAAATAATAATAAAAAAGCTAATATCTTATAAAG-GTTTGAAAAAATATAAA
**
32018989 ATTAATTAAAAATTAAGTCCATAATGTATCTAGACAAACTGA
130 ATTAATTAAAAATTAAGTCCATAATGTATCTAGACAAACAAA
32019031 TGTTTAGGTTAATTCTTGAAAGAATTTTTATATGTTTTATAAATTTATATATTTAAAAAATTATA
1 TGTTTAGGTTAATTCTTGAAAGAATTTTTATATGTTTTATAAATTTATATATTTAAAAAATTATA
*
32019096 -TTTTTTAATTTTTAAATAATAATATAAAAGCTAATATCTTATAAAGGTTTGAAAAAATATAAAA
66 TTTTTTTAATTTTTAAATAATAATAAAAAAGCTAATATCTTATAAAGGTTTGAAAAAATATAAAA
*
32019160 TTATTTAAAAATTAAGTCCATAATGTATCTAGACAAACAAA
131 TTAATTAAAAATTAAGTCCATAATGTATCTAGACAAACAAA
32019201 TGTTTAGGTT
1 TGTTTAGGTT
32019211 CATCTGAACT
Statistics
Matches: 170, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
170 107 0.63
171 63 0.37
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.44
Consensus pattern (171 bp):
TGTTTAGGTTAATTCTTGAAAGAATTTTTATATGTTTTATAAATTTATATATTTAAAAAATTATA
TTTTTTTAATTTTTAAATAATAATAAAAAAGCTAATATCTTATAAAGGTTTGAAAAAATATAAAA
TTAATTAAAAATTAAGTCCATAATGTATCTAGACAAACAAA
Found at i:32023353 original size:28 final size:28
Alignment explanation
Indices: 32023307--32023408 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
32023297 TGACTTTCGA
* *
32023307 CACTAAGTGTGCAAATTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
32023335 CACTAAGTGCGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* *
32023363 CACTAAGTGTGCGAGTTTAATGGCAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
32023391 CACTAAGTGTGCGAGTTT
1 CACTAAGTGTGCGAGTTT
32023409 GATTATTGAA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:32023422 original size:28 final size:28
Alignment explanation
Indices: 32023307--32023429 Score: 98
Period size: 28 Copynumber: 4.4 Consensus size: 28
32023297 TGACTTTCGA
* *
32023307 CACTAAGTGTGCAAATTTA--ATTGTAAAG
1 CACTAAGTGTGCGAGTTTATTATTG--AAG
*
32023335 CACTAAGTGCGCGAGTTTA--ATTGTAAAG
1 CACTAAGTGTGCGAGTTTATTATTG--AAG
*
32023363 CACTAAGTGTGCGAGTTTA--ATGGCAAAG
1 CACTAAGTGTGCGAGTTTATTATTG--AAG
32023391 CACTAAGTGTGCGAGTTTGATTATTGAA-
1 CACTAAGTGTGCGAGTTT-ATTATTGAAG
32023419 CACTAAGTGTG
1 CACTAAGTGTG
32023430 TGAACTTATT
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
28 79 0.93
29 3 0.04
31 3 0.04
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTATTATTGAAG
Found at i:32023423 original size:56 final size:55
Alignment explanation
Indices: 32023306--32023429 Score: 158
Period size: 56 Copynumber: 2.2 Consensus size: 55
32023296 TTGACTTTCG
* *
32023306 ACACTAAGTGTGCAAATTTAATTGTAAAGCACTAAGTGCGCGAGTTTAATTGTAA
1 ACACTAAGTGTGCAAATTTAATGGCAAAGCACTAAGTGCGCGAGTTTAATTGTAA
* * * * * *
32023361 AGCACTAAGTGTGCGAGTTTAATGGCAAAGCACTAAGTGTGCGAGTTTGATTATTGA
1 A-CACTAAGTGTGCAAATTTAATGGCAAAGCACTAAGTGCGCGAGTTTAATT-GTAA
32023418 ACACTAAGTGTG
1 ACACTAAGTGTG
32023430 TGAACTTATT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
55 1 0.02
56 55 0.93
57 3 0.05
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (55 bp):
ACACTAAGTGTGCAAATTTAATGGCAAAGCACTAAGTGCGCGAGTTTAATTGTAA
Found at i:32024294 original size:93 final size:93
Alignment explanation
Indices: 32024158--32024843 Score: 1117
Period size: 93 Copynumber: 7.4 Consensus size: 93
32024148 TGGTGAATAA
* * *
32024158 ATGCTGTCCAATTTT-GT-ATATACATGCTGTCAAATTTTGTATATACATGCTGTCAAATTTTGT
1 ATGCTGCCCAATTTTGGTGA-ATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGT
32024221 GTATAAGTGCTGTCCAAATTGGTATATAT
65 GTATAAGTGCTGTCCAAATTGGTATATAT
32024250 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
* * * *
32024315 TATAAGTGTTGCCCAAATTGCTACATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
* **
32024343 ATGCTGCCCAATTTTGGTGAATAAATGCTATCCAATTTTGTATATACATGCTGTCAAATTTCATG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
* *
32024408 TATAAGTGCTGTCCAAATTGCTACATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
* *
32024436 ATGCTGCCCAATTTTGGTGAATAAATGTTGTCCAATTTTGTATATACATGCTGTCCAATTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
32024501 TATAAGTGCTGTCCAAATTGGTATATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
* *
32024529 ATGCTGCCCAATTTTGGTGAATAAATGCTGTTCAATTTTGTTTATACATGCTGTCAAATTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
32024594 TATAAGTGCTGTCCAAATTGGTATATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
*
32024622 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAGTTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
32024687 TATAAGTGCTGTCCAAATTGGTATATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
32024715 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
* *
32024780 TATAAGTGCTATCCAAATTGGTATATAC
66 TATAAGTGCTGTCCAAATTGGTATATAT
* * * *
32024808 ACGCTGCTCAATTTCTGATGTATAAGA-GCTGTCCAA
1 ATGCTGCCCAATTT-TGGTGAATAA-ATGCTGTCCAA
32024844 ACAAGGTAGG
Statistics
Matches: 557, Mismatches: 33, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
92 14 0.03
93 524 0.94
94 18 0.03
95 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (93 bp):
ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
TATAAGTGCTGTCCAAATTGGTATATAT
Found at i:32029100 original size:40 final size:40
Alignment explanation
Indices: 32029046--32029790 Score: 1276
Period size: 40 Copynumber: 18.6 Consensus size: 40
32029036 CATTTGAATG
* *
32029046 ATATCCGGGATAAGACCTGAAGGCATTTGTGTGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32029086 ATATCCCGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32029126 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32029166 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32029206 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32029246 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32029286 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32029326 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32029366 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32029406 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32029446 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
32029486 ATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32029526 ATATCCGGGATAAGACCCGATGGCGTTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32029566 ATATCCGGGATAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32029606 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32029646 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32029686 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * * *
32029726 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32029766 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGATAAGACCCGAAGGCA
32029791 ATTGAGCTTG
Statistics
Matches: 673, Mismatches: 30, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.00
40 670 1.00
41 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:32037109 original size:40 final size:40
Alignment explanation
Indices: 32037055--32037993 Score: 1568
Period size: 40 Copynumber: 23.6 Consensus size: 40
32037045 CATTTGAATG
*
32037055 ATATCCGGGATAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32037095 ATATCCCGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32037135 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32037175 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32037215 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32037255 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32037295 ATATCCGGGATAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32037335 ATATCCGGGCTAAGACCCGAAGACATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32037375 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32037415 ATATCCGGG-TAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32037454 ATATCCGGGAT-----CTGAAGGCATTTGTGCGAAATGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32037489 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32037529 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32037569 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTCAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32037609 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32037649 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32037689 ATATCCGGGATAAGATCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32037729 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
32037769 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
*
32037809 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
32037849 ATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32037889 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * * *
32037929 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
32037969 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGATAAGACCCGAAGGCA
32037994 ATTGAGCTTG
Statistics
Matches: 848, Mismatches: 43, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
35 33 0.04
39 41 0.05
40 773 0.91
41 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:32048675 original size:28 final size:28
Alignment explanation
Indices: 32048634--32048759 Score: 164
Period size: 28 Copynumber: 4.5 Consensus size: 28
32048624 TGACTTTCGA
*
32048634 CACTAAGTGTGCGAATTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
32048662 CACTAAGTGCGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* *
32048690 CACTAAGTGTGCGAGTTTAATGGCAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * * *
32048718 CACTAAGTGTGTGAGTTTGATTATTGAA-
1 CACTAAGTGTGCGAGTTTAATT-GTAAAG
32048746 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
32048760 ACTTATTAAA
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 83 0.98
29 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:32049632 original size:93 final size:93
Alignment explanation
Indices: 32049483--32050146 Score: 1098
Period size: 93 Copynumber: 7.2 Consensus size: 93
32049473 TGGTGAATAA
* * * * *
32049483 ATGCTGTCCAATTTT-GT-ATATACATGATGTCAAATTATGTATATACATGCTGTCAAATTTTGT
1 ATGCTGCCCAATTTTGGTGA-ATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGT
32049546 GTATAAGTGCTGTCCAAATTGGTATATAT
65 GTATAAGTGCTGTCCAAATTGGTATATAT
32049575 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
* * * *
32049640 TATAAGTGTTGCCCAAATTGCTACATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
* **
32049668 ATGCTGCCCAATTTTGGTGAATAAATGCTATCCAATTTTGTATATACATGCTGTCAAATTTCATG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
* *
32049733 TATAAGTGCTGTCCAAATTGCTACATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
* *
32049761 ATGCTGCCCAATTTTGGTGAATAAATGTTGTCCAATTTTGTATATACATGCTGTCCAATTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
32049826 TATAAGTGCTGTCCAAATTGGTATATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
*
32049854 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCCAATTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
32049919 TATAAGTGCTGTCCAAATTGGTATATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
*
32049947 ATGCTGCCCAATTTTGTTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
32050012 TATAAGTGCTGTCCAAATTGGTATATAT
66 TATAAGTGCTGTCCAAATTGGTATATAT
*
32050040 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGGTGTCAAATTTTGTG
1 ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
* *
32050105 TATAAGTGCTGTCCGAATTGGTATATAC
66 TATAAGTGCTGTCCAAATTGGTATATAT
* *
32050133 ATGCTTCTCAATTT
1 ATGCTGCCCAATTT
32050147 CTGATGTATA
Statistics
Matches: 540, Mismatches: 30, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
92 14 0.03
93 525 0.97
94 1 0.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (93 bp):
ATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGCTGTCAAATTTTGTG
TATAAGTGCTGTCCAAATTGGTATATAT
Found at i:32050131 original size:23 final size:23
Alignment explanation
Indices: 32049451--32050146 Score: 539
Period size: 23 Copynumber: 30.0 Consensus size: 23
32049441 TCTAAAATTG
* *
32049451 GTATATATATGCTGCCCAATTTT
1 GTATATACATGCTGTCCAATTTT
*
32049474 GGTGA-ATAAATGCTGTCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
* * *
32049498 GTATATACATGATGTCAAATTAT
1 GTATATACATGCTGTCCAATTTT
*
32049521 GTATATACATGCTGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
32049544 GTGTATA-AGTGCTGTCCAAATTG
1 GTATATACA-TGCTGTCCAATTTT
* *
32049567 GTATATATATGCTGCCCAATTTT
1 GTATATACATGCTGTCCAATTTT
*
32049590 GGTGA-ATAAATGCTGTCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
*
32049614 GTATATACATGCTGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* * * *
32049637 GTGTATA-AGTGTTGCCCAA-ATT
1 GTATATACA-TGCTGTCCAATTTT
* * *
32049659 GCTACATATATGCTGCCCAATTTT
1 G-TATATACATGCTGTCCAATTTT
* *
32049683 GGTGA-ATAAATGCTATCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
*
32049707 GTATATACATGCTGTCAAATTTCAT
1 GTATATACATGCTGTCCAATTT--T
* *
32049732 GTATA-A-GTGCTGTCCAA-ATT
1 GTATATACATGCTGTCCAATTTT
* * *
32049752 GCTACATATATGCTGCCCAATTTT
1 G-TATATACATGCTGTCCAATTTT
* *
32049776 GGTGA-ATAAATGTTGTCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
32049800 GTATATACATGCTGTCCAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
32049823 GTGTATA-AGTGCTGTCCAAATTG
1 GTATATACA-TGCTGTCCAATTTT
* *
32049846 GTATATATATGCTGCCCAATTTT
1 GTATATACATGCTGTCCAATTTT
*
32049869 GGTGA-ATAAATGCTGTCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
32049893 GTATATACATGCTGTCCAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
32049916 GTGTATA-AGTGCTGTCCAAATTG
1 GTATATACA-TGCTGTCCAATTTT
* *
32049939 GTATATATATGCTGCCCAATTTT
1 GTATATACATGCTGTCCAATTTT
*
32049962 GT-TGAATAAATGCTGTCCAATTTT
1 GTAT--ATACATGCTGTCCAATTTT
*
32049986 GTATATACATGCTGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
32050009 GTGTATA-AGTGCTGTCCAAATTG
1 GTATATACA-TGCTGTCCAATTTT
* *
32050032 GTATATATATGCTGCCCAATTTT
1 GTATATACATGCTGTCCAATTTT
*
32050055 GGTGA-ATAAATGCTGTCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
* *
32050079 GTATATACATGGTGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* *
32050102 GTGTATA-AGTGCTGTCCGAA-TTG
1 GTATATACA-TGCTGTCC-AATTTT
32050125 GTATATACATGCT-TCTCAATTT
1 GTATATACATGCTGTC-CAATTT
32050147 CTGATGTATA
Statistics
Matches: 543, Mismatches: 86, Indels: 87
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.00
21 3 0.01
22 22 0.04
23 359 0.66
24 142 0.26
25 15 0.03
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (23 bp):
GTATATACATGCTGTCCAATTTT
Found at i:32052328 original size:26 final size:26
Alignment explanation
Indices: 32052277--32052367 Score: 94
Period size: 26 Copynumber: 3.5 Consensus size: 26
32052267 TCCTGAATAA
* *
32052277 CAGGCCTTGAGTCGGTGATCATTTAG
1 CAGGCCTTGAGCCGGTGATTATTTAG
*
32052303 CAGGCCTTGAGCCGGTGATTACTTAG
1 CAGGCCTTGAGCCGGTGATTATTTAG
* * *
32052329 TAGG-CTATGAACCAGTGATTATTTAG
1 CAGGCCT-TGAGCCGGTGATTATTTAG
* *
32052355 AAGGCATTGAGCC
1 CAGGCCTTGAGCC
32052368 CTTGGTTATT
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 2 0.04
26 50 0.94
27 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (26 bp):
CAGGCCTTGAGCCGGTGATTATTTAG
Found at i:32059296 original size:18 final size:18
Alignment explanation
Indices: 32059273--32059314 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
32059263 CGATTTTGGG
*
32059273 CATGCATTCCATGCAACC
1 CATGCATTCCATGCAAAC
*
32059291 CATGCATTTCATGCAAAC
1 CATGCATTCCATGCAAAC
32059309 CATGCA
1 CATGCA
32059315 ATGTGTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.31, C:0.33, G:0.12, T:0.24
Consensus pattern (18 bp):
CATGCATTCCATGCAAAC
Found at i:32060620 original size:10 final size:11
Alignment explanation
Indices: 32060602--32060632 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
32060592 AAATTGGTAT
32060602 TTCAAAAAAAA
1 TTCAAAAAAAA
32060613 TT-AAAAAAAA
1 TTCAAAAAAAA
32060623 TTCAAAAAAA
1 TTCAAAAAAA
32060633 GGGAATACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (11 bp):
TTCAAAAAAAA
Found at i:32062774 original size:12 final size:11
Alignment explanation
Indices: 32062753--32062791 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
32062743 AAAATGAGAG
32062753 AGAAAAAGAAA
1 AGAAAAAGAAA
32062764 AGAAAATAGAAA
1 AGAAAA-AGAAA
*
32062776 AGAAGAAAGGAA
1 AGAA-AAAGAAA
32062788 AGAA
1 AGAA
32062792 TGAGTCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 6 0.24
12 17 0.68
13 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (11 bp):
AGAAAAAGAAA
Found at i:32062821 original size:31 final size:34
Alignment explanation
Indices: 32062766--32062848 Score: 86
Period size: 33 Copynumber: 2.5 Consensus size: 34
32062756 AAAAGAAAAG
* *
32062766 AAAATAGAAAAGAAGAAAGGAAAGA-A-TGA-GTCA
1 AAAACAGAAGAGAA-AAAGGAAAGAGAGTGAGGT-A
32062799 AAAACAGAAGAGAAAAA-GAAAGAGAGTGAGGTA
1 AAAACAGAAGAGAAAAAGGAAAGAGAGTGAGGTA
32062832 AAAACACG-AGAGAAAAA
1 AAAACA-GAAGAGAAAAA
32062849 TTAAAGAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
31 6 0.14
32 4 0.09
33 31 0.70
34 3 0.07
ACGTcount: A:0.64, C:0.05, G:0.25, T:0.06
Consensus pattern (34 bp):
AAAACAGAAGAGAAAAAGGAAAGAGAGTGAGGTA
Found at i:32065798 original size:18 final size:17
Alignment explanation
Indices: 32065776--32065827 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 17
32065766 ACATCCATTT
32065776 CATGCATTCCATGCAAC
1 CATGCATTCCATGCAAC
*
32065793 CTATGCATTTCATGCGAAC
1 C-ATGCATTCCATGC-AAC
32065812 CATGCATTCCATGCAA
1 CATGCATTCCATGCAA
32065828 TGTGCTGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 3 0.10
18 24 0.77
19 4 0.13
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (17 bp):
CATGCATTCCATGCAAC
Found at i:32068026 original size:26 final size:26
Alignment explanation
Indices: 32067989--32068114 Score: 137
Period size: 26 Copynumber: 4.8 Consensus size: 26
32067979 CCTGAATAAT
*
32067989 AGGCCTTGAGCCGGTGATTATTTACC
1 AGGCCTTGAGCCGGTGATTATTTAGC
* ** *
32068015 AGGCCTTAAGCCATTGATTATTTAAC
1 AGGCCTTGAGCCGGTGATTATTTAGC
* * *
32068041 ATGCCTTGAGCCGATGATTACTTAGC
1 AGGCCTTGAGCCGGTGATTATTTAGC
*
32068067 AGG-CTATGAGCCGGTGATTATTTAGT
1 AGGCCT-TGAGCCGGTGATTATTTAGC
* *
32068093 AGGCCTTGAGCCAGTGGTTATT
1 AGGCCTTGAGCCGGTGATTATT
32068115 CAGTCGATAC
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
25 2 0.02
26 78 0.95
27 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (26 bp):
AGGCCTTGAGCCGGTGATTATTTAGC
Found at i:32072487 original size:16 final size:18
Alignment explanation
Indices: 32072454--32072488 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32072444 TCAAGCTGTA
32072454 TCAGAACATGAGCTTGAG
1 TCAGAACATGAGCTTGAG
32072472 TCAGAACA-GA-CTTGAG
1 TCAGAACATGAGCTTGAG
32072488 T
1 T
32072489 TTCTCGAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 2 0.12
18 8 0.47
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (18 bp):
TCAGAACATGAGCTTGAG
Found at i:32089964 original size:20 final size:20
Alignment explanation
Indices: 32089923--32089964 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32089913 ATAATTTTAT
*
32089923 TAAATTATAAATTATATTAA
1 TAAATTATAAATTATATAAA
32089943 TAAATTATTAAATTAT-TAAA
1 TAAATTA-TAAATTATATAAA
32089963 TA
1 TA
32089965 TAAATATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAATTATAAATTATATAAA
Found at i:32090010 original size:22 final size:22
Alignment explanation
Indices: 32089985--32090047 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
32089975 TGTTAATAAT
*
32089985 ATTAAAAGTTATAATATT-TGAG
1 ATTAAAA-TTATAATATTATGAA
* * *
32090007 ATTAATATTTTAATATTATTAA
1 ATTAAAATTATAATATTATGAA
*
32090029 ATTAAAATTAAAATATTAT
1 ATTAAAATTATAATATTAT
32090048 TAATATTATA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 9 0.27
22 24 0.73
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (22 bp):
ATTAAAATTATAATATTATGAA
Found at i:32090055 original size:17 final size:17
Alignment explanation
Indices: 32090029--32090062 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32090019 ATATTATTAA
32090029 ATTAAAATTAAAATATT
1 ATTAAAATTAAAATATT
* *
32090046 ATTAATATTATAATATT
1 ATTAAAATTAAAATATT
32090063 TGGTTTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTAAAATTAAAATATT
Found at i:32108065 original size:40 final size:40
Alignment explanation
Indices: 32108009--32108398 Score: 645
Period size: 40 Copynumber: 9.8 Consensus size: 40
32107999 GCATGAGCAA
*
32108009 TTGATATATCCAGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
32108049 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
32108089 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
32108129 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
32108169 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
32108209 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
32108249 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* * *
32108289 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
32108329 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* * * *
32108369 TTGCTATACCCGGGTTAAGACCCGAAGGCA
1 TTGATATATCCGGGCTAAAACCCGAAGGCA
32108399 ATTGAGCTTG
Statistics
Matches: 330, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 330 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
Found at i:32116328 original size:40 final size:40
Alignment explanation
Indices: 32116273--32116742 Score: 778
Period size: 40 Copynumber: 11.8 Consensus size: 40
32116263 GCATGAGCAA
32116273 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
32116313 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
32116353 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
32116393 TTGATATATCCGGGCTAAAACCCAAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
32116433 TTGATATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
32116473 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
32116513 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
32116553 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
*
32116593 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* * *
32116633 TTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* *
32116673 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
* * * *
32116713 TTGCTATACCCGGGTTAAGACCCGAAGGCA
1 TTGATATATCCGGGCTAAAACCCGAAGGCA
32116743 ATTGAGCTTG
Statistics
Matches: 405, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 405 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
Found at i:32126482 original size:22 final size:21
Alignment explanation
Indices: 32126450--32126515 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 21
32126440 ATACGAGTAT
32126450 TGTGATATATGCTTAAAGTTA
1 TGTGATATATGCTTAAAGTTA
32126471 TGTGATTATATGAC-T--A--T-
1 TGTGA-TATATG-CTTAAAGTTA
32126488 TGTGATATATGCTTAAATGTTA
1 TGTGATATATGCTTAAA-GTTA
32126510 TGTGAT
1 TGTGAT
32126516 TAAATGTGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 17
0.68 0.00 0.32
Matches are distributed among these distances:
15 1 0.03
16 7 0.19
17 5 0.14
18 2 0.06
20 1 0.03
21 6 0.17
22 13 0.36
23 1 0.03
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (21 bp):
TGTGATATATGCTTAAAGTTA
Found at i:32126496 original size:77 final size:78
Alignment explanation
Indices: 32126367--32126517 Score: 243
Period size: 77 Copynumber: 1.9 Consensus size: 78
32126357 AAATGCTTTA
*
32126367 AGTATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTATGATATATGCTTGAATGTT
1 AGTATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTATGATATATGCTTAAATGTT
32126432 ATGTCATTATACG
66 ATGTCATTATACG
* *
32126445 AGTATTGTGATATATGCTTAAA-GTTATGTGATTATATG-ACTATTGTGATATATGCTTAAATGT
1 AGTATTGTGATATATGCTTAAATGTTATGAGATTATATGTA-TATTATGATATATGCTTAAATGT
*
32126508 TATGTGATTA
65 TATGTCATTA
32126518 AATGTGTAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
76 1 0.01
77 45 0.66
78 22 0.32
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.45
Consensus pattern (78 bp):
AGTATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTATGATATATGCTTAAATGTT
ATGTCATTATACG
Found at i:32126533 original size:39 final size:39
Alignment explanation
Indices: 32126367--32126543 Score: 223
Period size: 39 Copynumber: 4.6 Consensus size: 39
32126357 AAATGCTTTA
* *
32126367 AGTATTGTGATATATGCTTAAATGTTATGAGATTATATG
1 AGTATTATGATATATGCTTAAATGTTATGTGATTATATG
* * *
32126406 TA-TATTATGATATATGCTTGAATGTTATGTCATTATACG
1 -AGTATTATGATATATGCTTAAATGTTATGTGATTATATG
*
32126445 AGTATTGTGATATATGCTTAAA-GTTATGTGATTATATG
1 AGTATTATGATATATGCTTAAATGTTATGTGATTATATG
* * *
32126483 ACTATTGTGATATATGCTTAAATGTTATGTGATTAAATG
1 AGTATTATGATATATGCTTAAATGTTATGTGATTATATG
* * *
32126522 TGTAATATGATACATGCTTAAA
1 AGTATTATGATATATGCTTAAA
32126544 AGTAAAATGA
Statistics
Matches: 119, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
38 36 0.30
39 82 0.69
40 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (39 bp):
AGTATTATGATATATGCTTAAATGTTATGTGATTATATG
Found at i:32126533 original size:77 final size:78
Alignment explanation
Indices: 32126374--32126543 Score: 227
Period size: 77 Copynumber: 2.2 Consensus size: 78
32126364 TTAAGTATTG
*
32126374 TGATATATGCTTAAATGTTATGAGATTATATGTATATTATGATATATGCTTGAATGTTATGTCAT
1 TGATATATGCTTAAATGTTATGAGATTATATGTATATTATGATATATGCTTAAATGTTATGTCAT
* * *
32126439 TATACGAGTATTG
66 TAAACGAGTAATA
* * *
32126452 TGATATATGCTTAAA-GTTATGTGATTATATG-ACTATTGTGATATATGCTTAAATGTTATGTGA
1 TGATATATGCTTAAATGTTATGAGATTATATGTA-TATTATGATATATGCTTAAATGTTATGTCA
* *
32126515 TTAAATGTGTAATA
65 TTAAACGAGTAATA
*
32126529 TGATACATGCTTAAA
1 TGATATATGCTTAAA
32126544 AGTAAAATGA
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
76 1 0.01
77 65 0.80
78 15 0.19
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.44
Consensus pattern (78 bp):
TGATATATGCTTAAATGTTATGAGATTATATGTATATTATGATATATGCTTAAATGTTATGTCAT
TAAACGAGTAATA
Found at i:32132644 original size:16 final size:16
Alignment explanation
Indices: 32132623--32132653 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
32132613 TTATTTATAT
32132623 TTATTAATATAATAAG
1 TTATTAATATAATAAG
32132639 TTATTAATATAATAA
1 TTATTAATATAATAA
32132654 ATATAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
TTATTAATATAATAAG
Found at i:32132659 original size:22 final size:22
Alignment explanation
Indices: 32132620--32132677 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
32132610 TAATTATTTA
* *
32132620 TATT-TATTAATATA-ATAAGT
1 TATTATATTAATAAATATAAAT
32132640 TATTA-ATATAATAAATATAAAT
1 TATTATAT-TAATAAATATAAAT
32132662 TATTATATTAATAAAT
1 TATTATATTAATAAAT
32132678 TATTTAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 6 0.19
21 6 0.19
22 18 0.56
23 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
TATTATATTAATAAATATAAAT
Found at i:32132777 original size:15 final size:15
Alignment explanation
Indices: 32132757--32132813 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
32132747 ATTCAATATT
32132757 AATATTTTAATAATA
1 AATATTTTAATAATA
*
32132772 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
32132791 AATATATTAATAATA
1 AATATTTTAATAATA
*
32132806 AATGTTTT
1 AATATTTT
32132814 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:32133597 original size:24 final size:22
Alignment explanation
Indices: 32133570--32133622 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
32133560 ATGTTTTTTA
**
32133570 TTCAATTCCAATTAAATAATATT
1 TTCAATTAAAATTAAA-AATATT
32133593 GTTCAA-TAAAATTAAAAATATT
1 -TTCAATTAAAATTAAAAATATT
32133615 TTCAATTA
1 TTCAATTA
32133623 TTTTTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 5 0.19
22 8 0.31
23 8 0.31
24 5 0.19
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (22 bp):
TTCAATTAAAATTAAAAATATT
Found at i:32133607 original size:23 final size:21
Alignment explanation
Indices: 32133579--32133620 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
32133569 ATTCAATTCC
32133579 AATTAAATAATATTGTTCAATAA
1 AATTAAA-AATATT-TTCAATAA
32133602 AATTAAAAATATTTTCAAT
1 AATTAAAAATATTTTCAAT
32133621 TATTTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
23 7 0.37
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (21 bp):
AATTAAAAATATTTTCAATAA
Found at i:32133646 original size:22 final size:22
Alignment explanation
Indices: 32133604--32133647 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32133594 TTCAATAAAA
* *
32133604 TTAAAAATATTTTCAATTATTT
1 TTAAAAATATTATAAATTATTT
32133626 TTAAAAA-ATTATAAATATATTT
1 TTAAAAATATTATAAAT-TATTT
32133648 AATAAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
TTAAAAATATTATAAATTATTT
Found at i:32137028 original size:130 final size:131
Alignment explanation
Indices: 32136834--32137106 Score: 449
Period size: 130 Copynumber: 2.1 Consensus size: 131
32136824 GCTGCTTAGA
*
32136834 GAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTT
1 GAGATAGGACTAGTGGCTT-AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCATCTTT
* *
32136899 GATCTGTTCCACTACTGTTTAGGGAGACATGATCTACAATCTTCAACCTATTACACTACTTTCCA
65 GATCTGTTCCACTACTATTTAGGGAGACATGATCTACAATCTTCAACCTATTACACTACTGTCCA
32136964 AG
130 AG
*
32136966 GAGATAGGACTGGTGGCTT-ATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCATCTTTG
1 GAGATAGGACTAGTGGCTTAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCATCTTTG
* * * *
32137030 ATCTGTTCCACTACTATTTAGGGAGACATGATCTACGATCTTCAACCTATTCCACTGCTGTCCAG
66 ATCTGTTCCACTACTATTTAGGGAGACATGATCTACAATCTTCAACCTATTACACTACTGTCCAA
32137095 G
131 G
*
32137096 GAGATATGACT
1 GAGATAGGACT
32137107 TTCAATCTTC
Statistics
Matches: 132, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
130 114 0.86
132 18 0.14
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (131 bp):
GAGATAGGACTAGTGGCTTAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCACCATCTTTG
ATCTGTTCCACTACTATTTAGGGAGACATGATCTACAATCTTCAACCTATTACACTACTGTCCAA
G
Found at i:32137083 original size:44 final size:44
Alignment explanation
Indices: 32137067--32137458 Score: 649
Period size: 44 Copynumber: 8.9 Consensus size: 44
32137057 ATGATCTACG
* *
32137067 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATATGACTTTCA
1 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTTACA
*
32137111 ATCTTCAACCTATTCCACTGTTGTCCAGGGAGATAGGACTTACA
1 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTTACA
* *
32137155 ATCTTCAACCTATTCCACTGTTGTCCAGGGAGATAGAACTTACA
1 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTTACA
* *
32137199 ATCTTCAACCTATTCCACTGTTGTCCAGGGAGATAAGACTTACA
1 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTTACA
* * *
32137243 ATCTTCAACCTATCCCACTGCTGTCCCGAGAGATAGGACTTACA
1 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTTACA
* *
32137287 ATCTTCAACCTATTCCATTACTGTCCAGGGAGATAGGACTTACA
1 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTTACA
*
32137331 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGAACTTACA
1 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTTACA
* *
32137375 ATCTTCAACCTATTCCACTGTTGTCCAGGGAGATAAGACTTACA
1 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTTACA
32137419 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACT
1 ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACT
32137459 GGTGGCTTAT
Statistics
Matches: 324, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 324 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (44 bp):
ATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTTACA
Found at i:32137599 original size:44 final size:44
Alignment explanation
Indices: 32137549--32137632 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
32137539 ATAATCTACG
* * *
32137549 ATCTTCAACCTATTTTACTGCTGTCTAGAGAGATAGGACTTACA
1 ATCTTCAACCTATTCTACAGCTGTCCAGAGAGATAGGACTTACA
*
32137593 ATCTTCAACCTATTCTACAGCTGTCCAGGGAGATAGGACT
1 ATCTTCAACCTATTCTACAGCTGTCCAGAGAGATAGGACT
32137633 GGTATCTTCG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTTCAACCTATTCTACAGCTGTCCAGAGAGATAGGACTTACA
Found at i:32144800 original size:23 final size:23
Alignment explanation
Indices: 32144771--32144836 Score: 123
Period size: 23 Copynumber: 2.9 Consensus size: 23
32144761 ATGGTTTGGG
32144771 TTTGGTACGAAATGGAAATGTAA
1 TTTGGTACGAAATGGAAATGTAA
32144794 TTTGGTACGAAATGGAAATGTAA
1 TTTGGTACGAAATGGAAATGTAA
*
32144817 TTTGGTTCGAAATGGAAATG
1 TTTGGTACGAAATGGAAATG
32144837 GTTTAAAAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (23 bp):
TTTGGTACGAAATGGAAATGTAA
Found at i:32145954 original size:29 final size:31
Alignment explanation
Indices: 32145890--32145954 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 31
32145880 AGCAAAAATT
*
32145890 AATTGAGCTGAATTTGTAAGTATTGGAGCTA
1 AATTGAGCTGAATTTGTAACTATTGGAGCTA
32145921 AATTGAGCTG-ATTTG-AACTCATT-GAGCTA
1 AATTGAGCTGAATTTGTAACT-ATTGGAGCTA
32145950 AATTG
1 AATTG
32145955 GAAGTTAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 14 0.44
30 8 0.25
31 10 0.31
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.35
Consensus pattern (31 bp):
AATTGAGCTGAATTTGTAACTATTGGAGCTA
Found at i:32152983 original size:42 final size:42
Alignment explanation
Indices: 32152936--32153015 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
32152926 ATGTGTCAAC
32152936 CGTTTGAAATTCAAACATTTAAACTCTTGTTCTTATCCAAAA
1 CGTTTGAAATTCAAACATTTAAACTCTTGTTCTTATCCAAAA
*
32152978 CGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC
1 CGTTTGAAATTCAAACATTTAAACTCTTGTTCTTATCC
32153016 CTTTGAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (42 bp):
CGTTTGAAATTCAAACATTTAAACTCTTGTTCTTATCCAAAA
Found at i:32156516 original size:26 final size:24
Alignment explanation
Indices: 32156486--32156534 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
32156476 ATACTAAATA
*
32156486 ATTTAATAATAAAATAATAAAATATC
1 ATTTAAAAATAAAAT--TAAAATATC
*
32156512 ATTTAAAAATCAAATTAAAATAT
1 ATTTAAAAATAAAATTAAAATAT
32156535 TAATAAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 8 0.38
26 13 0.62
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (24 bp):
ATTTAAAAATAAAATTAAAATATC
Found at i:32162824 original size:24 final size:24
Alignment explanation
Indices: 32162785--32162836 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32162775 AATCAATGTC
* * *
32162785 AAATATATTTTGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
32162809 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
32162833 AAAT
1 AAAT
32162837 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:32165754 original size:24 final size:24
Alignment explanation
Indices: 32165727--32165778 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32165717 AATTAATGTC
* *
32165727 AAATATATTATGCAAATAAATGCT
1 AAATATATTATACAAATAAATACT
*
32165751 AAATATATTATACTAATAAATACT
1 AAATATATTATACAAATAAATACT
32165775 AAAT
1 AAAT
32165779 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATATATTATACAAATAAATACT
Found at i:32187888 original size:37 final size:37
Alignment explanation
Indices: 32187833--32187985 Score: 143
Period size: 37 Copynumber: 4.2 Consensus size: 37
32187823 AGTACACTCT
* *
32187833 ATCGAGCCAAATCTTATTGTTATACTGAATAAAGCTCA
1 ATCGAG-CAAATCTTACTGTTATACTGAATGAAGCTCA
* * *
32187871 ATCGAGCAAAT-TATATTGTTATACTGAATG-GGCTTA
1 ATCGAGCAAATCT-TACTGTTATACTGAATGAAGCTCA
* * *
32187907 AT-GAGTAAATCTTACTGTTATACTGAATGATGTTCA
1 ATCGAGCAAATCTTACTGTTATACTGAATGAAGCTCA
* * *
32187943 ATCAAGCAAAT-TCTACTGTTACACTGAGTGAAGCTCA
1 ATCGAGCAAATCT-TACTGTTATACTGAATGAAGCTCA
*
32187980 AACGAG
1 ATCGAG
32187986 TAGAAATCTA
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
35 23 0.24
36 14 0.15
37 51 0.54
38 6 0.06
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (37 bp):
ATCGAGCAAATCTTACTGTTATACTGAATGAAGCTCA
Found at i:32189238 original size:327 final size:327
Alignment explanation
Indices: 32188644--32189298 Score: 1247
Period size: 327 Copynumber: 2.0 Consensus size: 327
32188634 ATGTGTAGGC
32188644 ACCTATGCAATAAGGGAGTGAAATTGAGCAAGAAATAGATCACTTTGGGTTCACACAGCCTGAGA
1 ACCTATGCAATAAGGGAGTGAAATTGAGCAAGAAATAGATCACTTTGGGTTCACACAGCCTGAGA
**
32188709 CACAGGCGTGCGACTTAGCCATGTGAAGCACATGGCCTTGCGACTCAGTCGTGTGTCATCTGAGG
66 CACAGGCGTGCGACTTAGCCATGTGAAGCACACAGCCTTGCGACTCAGTCGTGTGTCATCTGAGG
32188774 GTCTTTTGTATACAAGTCAGTGATTTGCACAGCCTAACACACGACCTGGCACACAGGCATGTGGG
131 GTCTTTTGTATACAAGTCAGTGATTTGCACAGCCTAACACACGACCTGGCACACAGGCATGTGGG
32188839 GAACTCAGAGAGCTACACGGCCTGGCACACGGGCATGTGACACGACCGTGTGACCCTACTCAGAG
196 GAACTCAGAGAGCTACACGGCCTGGCACACGGGCATGTGACACGACCGTGTGACCCTACTCAGAG
32188904 AGTTACACAGGTGAGGACATGAGCTGGGACACAACCGTGTGTCCCTTGTTTGAAAGTTACACGGC
261 AGTTACACAGGTGAGGACATGAGCTGGGACACAACCGTGTGTCCCTTGTTTGAAAGTTACACGGC
32188969 CT
326 CT
32188971 ACCTATGCAATAAGGGAGTGAAATTGAGCAAGAAATAGATCACTTTGGGTTCACACAGCCTGAGA
1 ACCTATGCAATAAGGGAGTGAAATTGAGCAAGAAATAGATCACTTTGGGTTCACACAGCCTGAGA
*
32189036 CACAGGCGTGCGACTTAGCCATGTGAGGCACACAGCCTTGCGACTCAGTCGTGTGTCATCTGAGG
66 CACAGGCGTGCGACTTAGCCATGTGAAGCACACAGCCTTGCGACTCAGTCGTGTGTCATCTGAGG
*
32189101 GTCTTTTGTATACAAGTCAGTGATTTGCACAGCCTAACACATGACCTGGCACACAGGCATGTGGG
131 GTCTTTTGTATACAAGTCAGTGATTTGCACAGCCTAACACACGACCTGGCACACAGGCATGTGGG
* * *
32189166 GAACTCAGAGAGCTACACGGCCTGGCATACGGGCGTGTGACATGACCGTGTGACCCTACTCAGAG
196 GAACTCAGAGAGCTACACGGCCTGGCACACGGGCATGTGACACGACCGTGTGACCCTACTCAGAG
32189231 AGTTACACAGGTGAGGACATGAGCTGGGACACAACCGTGTGTCCCTTGTTTGAAAGTTACACGGC
261 AGTTACACAGGTGAGGACATGAGCTGGGACACAACCGTGTGTCCCTTGTTTGAAAGTTACACGGC
32189296 CT
326 CT
32189298 A
1 A
32189299 GTCACACGGC
Statistics
Matches: 321, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
327 321 1.00
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (327 bp):
ACCTATGCAATAAGGGAGTGAAATTGAGCAAGAAATAGATCACTTTGGGTTCACACAGCCTGAGA
CACAGGCGTGCGACTTAGCCATGTGAAGCACACAGCCTTGCGACTCAGTCGTGTGTCATCTGAGG
GTCTTTTGTATACAAGTCAGTGATTTGCACAGCCTAACACACGACCTGGCACACAGGCATGTGGG
GAACTCAGAGAGCTACACGGCCTGGCACACGGGCATGTGACACGACCGTGTGACCCTACTCAGAG
AGTTACACAGGTGAGGACATGAGCTGGGACACAACCGTGTGTCCCTTGTTTGAAAGTTACACGGC
CT
Found at i:32193593 original size:50 final size:50
Alignment explanation
Indices: 32193520--32193714 Score: 212
Period size: 50 Copynumber: 3.9 Consensus size: 50
32193510 CATTGAGATT
* * *
32193520 ATGAGAGGTCCCATGTAAAACCATGTTTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCAAG
* *
32193570 ATGAGAGG-CATCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAG
1 ATGAGAGGTC-CCATGTAAGACCATGTTTGGGACATGGCATTGGCACCAAG
** * * *
32193620 ATGAGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCTAT
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCAAG
* ** * * * * *
32193670 ATAAGAACTCTCATGTAAGACCATATATAGGATATGGCATTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA
32193715 GTACAAGAAA
Statistics
Matches: 120, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
49 1 0.01
50 118 0.98
51 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCAAG
Found at i:32193684 original size:100 final size:103
Alignment explanation
Indices: 32193466--32193714 Score: 274
Period size: 100 Copynumber: 2.4 Consensus size: 103
32193456 TATTTGGGTA
* * *
32193466 AAGAGA-TCTCATATAAGATCATGTCTGGGATATGGCATTGGCATCATTGAGATTATGAGAGGTC
1 AAGAGACTCTCATGTAAGACCATGTCTGGGATATGGCATTGGCACCA-T-AG--TATGAGAGGTC
* * *
32193530 CCATGTAAAACCATGTTTGGGACATGGCGTTGGCACCGAGAT
62 CCACGTAAAACCATGTTTGGGACATGGCATGGGCACCGAGAT
* * * * *
32193572 GAGAGGC-ATCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA-AG-ATGAGAGGTCCCCC
1 AAGAGACTCTCATGTAAGACCATGTCTGGGATATGGCATTGGCACCATAGTATGAGAGGTCCCAC
* * *
32193634 GTAAGACCATGTTTGGGACATGGCATGGGCACCTATAT
66 GTAAAACCATGTTTGGGACATGGCATGGGCACCGAGAT
* * *
32193672 AAGA-ACTCTCATGTAAGACCATATATAGGATATGGCATTGGCA
1 AAGAGACTCTCATGTAAGACCATGTCTGGGATATGGCATTGGCA
32193715 GTACAAGAAA
Statistics
Matches: 120, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
99 1 0.01
100 79 0.66
103 2 0.02
106 38 0.32
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (103 bp):
AAGAGACTCTCATGTAAGACCATGTCTGGGATATGGCATTGGCACCATAGTATGAGAGGTCCCAC
GTAAAACCATGTTTGGGACATGGCATGGGCACCGAGAT
Found at i:32196981 original size:29 final size:30
Alignment explanation
Indices: 32196928--32196986 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
32196918 GAATTAGATC
* *
32196928 AAATCAAAATTTCATGTATAAAATTGCACA
1 AAATCAAAAGTTCATGTATAAAATTACACA
**
32196958 AAATC-AAAGTTCATGTATCCAATTACACA
1 AAATCAAAAGTTCATGTATAAAATTACACA
32196987 TTAAACCATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.47, C:0.17, G:0.07, T:0.29
Consensus pattern (30 bp):
AAATCAAAAGTTCATGTATAAAATTACACA
Found at i:32200722 original size:430 final size:430
Alignment explanation
Indices: 32199922--32200784 Score: 1699
Period size: 430 Copynumber: 2.0 Consensus size: 430
32199912 CCAATGCCAA
32199922 AACACAACACATTTTTTTTTAGTGACGAGTATTTGAATTCGTAATTTACGGAATTCTTACTTAGG
1 AACACAACACATTTTTTTTTAGTGACGAGTATTTGAATTCGTAATTTACGGAATTCTTACTTAGG
* *
32199987 CGCGTTTTTTTTTATTTGACTAATCTCATTGCCCCAAAACAAATTCCATTGAAGTTTCTGGCACA
66 AGCGTTTTTTTTTATTTGAATAATCTCATTGCCCCAAAACAAATTCCATTGAAGTTTCTGGCACA
32200052 ACTACATATATTTCCTTGTATTGATGGTACCAAATCTCATGGCTTCATCAAATACTCCTTTATCC
131 ACTACATATATTTCCTTGTATTGATGGTACCAAATCTCATGGCTTCATCAAATACTCCTTTATCC
32200117 TCTCAAAGGCTTCTTGACATTCTTCTGTCCAATCTCTACCGCCATCTTTTCGAAACAATTTGAAG
196 TCTCAAAGGCTTCTTGACATTCTTCTGTCCAATCTCTACCGCCATCTTTTCGAAACAATTTGAAG
32200182 ATGGGGTCACATTTAGAAGTCAATTGAGATATAAAGTGATGTATATAATTTAATCCTCTCACTTC
261 ATGGGGTCACATTTAGAAGTCAATTGAGATATAAAGTGATGTATATAATTTAATCCTCTCACTTC
32200247 CTTTTGTGTGTGAGGTAAGACCGAATTCTGAAATGCCTTCAATTTTTCAGGATCTACCTCTATAC
326 CTTTTGTGTGTGAGGTAAGACCGAATTCTGAAATGCCTTCAATTTTTCAGGATCTACCTCTATAC
*
32200312 CTCGTTCGCTCACTAAAAAGTCCAATAGTTTTTCTAGCTT
391 CTCGTTCGCTCACTAAAAAGTCCAATAATTTTTCTAGCTT
32200352 AACACAACACATTTTTTTTTAGTGACGAGTATTTGAATTCGTAATTTACGGAATTCTTACTTAGG
1 AACACAACACATTTTTTTTTAGTGACGAGTATTTGAATTCGTAATTTACGGAATTCTTACTTAGG
32200417 AGCGTTTTTTTTTATTTGAATAATCTCATTGCCCCAAAACAAATTCCATTGAAGTTTCTGGCACA
66 AGCGTTTTTTTTTATTTGAATAATCTCATTGCCCCAAAACAAATTCCATTGAAGTTTCTGGCACA
32200482 ACTACATATATTTCCTTGTATTGATGGTACCAAATCTCATGGCTTCATCAAATACTCCTTTATCC
131 ACTACATATATTTCCTTGTATTGATGGTACCAAATCTCATGGCTTCATCAAATACTCCTTTATCC
32200547 TCTCAAAGGCTTCTTGACATTCTTCTGTCCAATCTCTACCGCCATCTTTTCGAAACAATTTGAAG
196 TCTCAAAGGCTTCTTGACATTCTTCTGTCCAATCTCTACCGCCATCTTTTCGAAACAATTTGAAG
32200612 ATGGGGTCACATTTAGAAGTCAATTGAGATATAAAGTGATGTATATAATTTAATCCTCTCACTTC
261 ATGGGGTCACATTTAGAAGTCAATTGAGATATAAAGTGATGTATATAATTTAATCCTCTCACTTC
32200677 CTTTTGTGTGTGAGGTAAGACCGAATTCTGAAATGCCTTCAATTTTTCAGGATCTACCTCTATAC
326 CTTTTGTGTGTGAGGTAAGACCGAATTCTGAAATGCCTTCAATTTTTCAGGATCTACCTCTATAC
32200742 CTCGTTCGCTCACTAAAAAGTCCAATAATTTTTCTAGCTT
391 CTCGTTCGCTCACTAAAAAGTCCAATAATTTTTCTAGCTT
32200782 AAC
1 AAC
32200785 TCCAAAAGTA
Statistics
Matches: 430, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
430 430 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (430 bp):
AACACAACACATTTTTTTTTAGTGACGAGTATTTGAATTCGTAATTTACGGAATTCTTACTTAGG
AGCGTTTTTTTTTATTTGAATAATCTCATTGCCCCAAAACAAATTCCATTGAAGTTTCTGGCACA
ACTACATATATTTCCTTGTATTGATGGTACCAAATCTCATGGCTTCATCAAATACTCCTTTATCC
TCTCAAAGGCTTCTTGACATTCTTCTGTCCAATCTCTACCGCCATCTTTTCGAAACAATTTGAAG
ATGGGGTCACATTTAGAAGTCAATTGAGATATAAAGTGATGTATATAATTTAATCCTCTCACTTC
CTTTTGTGTGTGAGGTAAGACCGAATTCTGAAATGCCTTCAATTTTTCAGGATCTACCTCTATAC
CTCGTTCGCTCACTAAAAAGTCCAATAATTTTTCTAGCTT
Found at i:32210331 original size:22 final size:22
Alignment explanation
Indices: 32210306--32210349 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
32210296 TCTTTTCTTC
32210306 TTTTGAATCGTTTTT-TTTTTGT
1 TTTTGAAT-GTTTTTATTTTTGT
*
32210328 TTTTGAATTTTTTTATTTTTGT
1 TTTTGAATGTTTTTATTTTTGT
32210350 ATTGATTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.75
Consensus pattern (22 bp):
TTTTGAATGTTTTTATTTTTGT
Found at i:32211152 original size:133 final size:134
Alignment explanation
Indices: 32210992--32211270 Score: 465
Period size: 133 Copynumber: 2.1 Consensus size: 134
32210982 ACACATTGTT
*
32210992 TGAGGATTTTTCTTTTAACTTTACTTAATAATTGAATGCTCAAATTAAGGTAAATATTTGTAAAG
1 TGAGGATTTTTCTTTTAACTTTACTTAATAATTGAATGCTCAAATTAAGGTAAACATTTGTAAAG
* *
32211057 GTC-ATTCACGTTAGAGCTAAACCTTTTAAAATAATTAAATAATAGTCAAACTTTTTGAAAATGT
66 G-CAATTCACGTAAGAGCTAAACCTTTTAAAATAATCAAATAATAGTCAAACTTTTTGAAAATGT
*
32211121 TTAAA
130 TAAAA
32211126 TGAGGATTTTTC-TTTAACTTTACTTAATAATTGAATGCTCAAATTAAGGTAAACATTTGTAAAG
1 TGAGGATTTTTCTTTTAACTTTACTTAATAATTGAATGCTCAAATTAAGGTAAACATTTGTAAAG
* *
32211190 GCAATTCACGTAAGAGCTAAACCTTTTAACATAATCAAATAATGGTCAAACTTTTTGAAAATGTT
66 GCAATTCACGTAAGAGCTAAACCTTTTAAAATAATCAAATAATAGTCAAACTTTTTGAAAATGTT
32211255 AAAA
131 AAAA
32211259 TGAAGG-TTTTTC
1 TG-AGGATTTTTC
32211271 ACACACTTCA
Statistics
Matches: 137, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
132 1 0.01
133 121 0.88
134 15 0.11
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (134 bp):
TGAGGATTTTTCTTTTAACTTTACTTAATAATTGAATGCTCAAATTAAGGTAAACATTTGTAAAG
GCAATTCACGTAAGAGCTAAACCTTTTAAAATAATCAAATAATAGTCAAACTTTTTGAAAATGTT
AAAA
Found at i:32215106 original size:70 final size:70
Alignment explanation
Indices: 32215024--32215196 Score: 201
Period size: 70 Copynumber: 2.5 Consensus size: 70
32215014 TTCATAGCTA
* * * *
32215024 GGAG-TTTGAGCTCTCGTTAACTGTTTTAATGGTTGCGGTATTGAACTTG-TGAACCTTAAGATT
1 GGAGCTTT-AGCTCTCGCTAACTATTTTGATGGTTGCAGTATTGAACTTGCT-AACCTTAAG-TT
32215087 -ACAATTG
63 CACAATTG
* * *
32215094 GGAGCTTTAGCTCTCGCTAACTATTTTGGA-GGCTGCAGTATTGAACTTGCTAGCTTTAAGTTCA
1 GGAGCTTTAGCTCTCGCTAACTATTTT-GATGGTTGCAGTATTGAACTTGCTAACCTTAAGTTCA
32215158 CAATTG
65 CAATTG
* *
32215164 AGAGCTTGAGCTCTCGCTAACTATTTTGATGGT
1 GGAGCTTTAGCTCTCGCTAACTATTTTGATGGT
32215197 CATGGTATTA
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
69 4 0.05
70 79 0.90
71 5 0.06
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (70 bp):
GGAGCTTTAGCTCTCGCTAACTATTTTGATGGTTGCAGTATTGAACTTGCTAACCTTAAGTTCAC
AATTG
Found at i:32215224 original size:140 final size:138
Alignment explanation
Indices: 32214965--32215420 Score: 457
Period size: 140 Copynumber: 3.3 Consensus size: 138
32214955 TAGCTTGAGT
* * ** *
32214965 TCTCGCTAACTGTTTTGGAGGCTACAATATTGAACCTACAAG-TCTTAAGTTCATAGCTAGGAGT
1 TCTCGCTAACTGTTTTGGAGGCTACAGTATTGAACCTACAAGCT-TTAAGTTCACAATTAGGAGC
* * * * * *
32215029 TTGAGCTCTCGTTAACTGTTTTAATGGTTGCGGTATTGAACTTGTGAACCTTAAGATTACAATTG
65 TTGAGCTCTCGCTAACTGTTTTGATGGTT--GGTATTAAACTTATGAGCCTTAAGATTACAGTTG
*
32215094 GGAGCTTTAGC
128 GGAGCCTTAGC
* * * * *
32215105 TCTCGCTAACTATTTTGGAGGCTGCAGTATTGAACTTGCTAGCTTTAAGTTCACAATT-GAGAGC
1 TCTCGCTAACTGTTTTGGAGGCTACAGTATTGAACCTACAAGCTTTAAGTTCACAATTAG-GAGC
* * * * *
32215169 TTGAGCTCTCGCTAACTATTTTGATGGTCATGGTATTAAACCTACGAGCCCTAAGATTATAGTTG
65 TTGAGCTCTCGCTAACTGTTTTGATGGT--TGGTATTAAACTTATGAGCCTTAAGATTACAGTTG
*
32215234 GAAGCCTTAGC
128 GGAGCCTTAGC
* * * * * *
32215245 TCTCGCTGACTGTTTTGGAGGTTACAGCATTAAACCTACAAGCCTTAAGTTCACAATTAGGAGCC
1 TCTCGCTAACTGTTTTGGAGGCTACAGTATTGAACCTACAAGCTTTAAGTTCACAATTAGGAGCT
* * * * *
32215310 TGAGCTATCGCTAAATGTTTTGATAGTTGCGATTTTAAACTTATGAGCCTTAAGATTACAGTTAG
66 TGAGCTCTCGCTAACTGTTTTGATGGTTG-G-TATTAAACTTATGAGCCTTAAGATTACAGTTGG
32215375 GAGCCTTAGC
129 GAGCCTTAGC
* ** * * * *
32215385 TTTTACTAACTGTTTTAGAGGTTGCAGTACTGAACC
1 TCTCGCTAACTGTTTTGGAGGCTACAGTATTGAACC
32215421 AGCGAGCCTT
Statistics
Matches: 255, Mismatches: 54, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
138 2 0.01
139 2 0.01
140 248 0.97
141 2 0.01
142 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (138 bp):
TCTCGCTAACTGTTTTGGAGGCTACAGTATTGAACCTACAAGCTTTAAGTTCACAATTAGGAGCT
TGAGCTCTCGCTAACTGTTTTGATGGTTGGTATTAAACTTATGAGCCTTAAGATTACAGTTGGGA
GCCTTAGC
Found at i:32215310 original size:70 final size:69
Alignment explanation
Indices: 32215077--32215445 Score: 221
Period size: 70 Copynumber: 5.3 Consensus size: 69
32215067 AACTTGTGAA
* * * * *
32215077 CCTTAAGATTACAATTGGGAGCTTTAGCTCTCGCTAACTATTTTGGAGGCTGCAGTATTGAACTT
1 CCTTAAGATTACAATT-GGAGCCTTAGCTCTCGCTAACTATTTTGGAGGTTACAGTATTAAACCT
* *
32215142 GCTAG
65 ACAAG
* * **
32215147 CTTTAAG-TTCACAATTGAGAG-CTTGAGCTCTCGCTAACTATTTT-GATGGTCATGGTATTAAA
1 CCTTAAGATT-ACAATTG-GAGCCTT-AGCTCTCGCTAACTATTTTGGA-GGTTACAGTATTAAA
*
32215209 CCTACGAG
62 CCTACAAG
* * * * * *
32215217 CCCTAAGATTATAGTTGGAAGCCTTAGCTCTCGCTGACTGTTTTGGAGGTTACAGCATTAAACCT
1 CCTTAAGATTACAATTGG-AGCCTTAGCTCTCGCTAACTATTTTGGAGGTTACAGTATTAAACCT
32215282 ACAAG
65 ACAAG
* * * * * * *
32215287 CCTTAAG-TTCACAATTAGGAGCCTGAGCTATCGCTAAATGTTTT-GATAGTTGC-GATTTTAAA
1 CCTTAAGATT-ACAATT-GGAGCCTTAGCTCTCGCTAACTATTTTGGA-GGTTACAG-TATTAAA
* **
32215349 CTTATGAG
62 CCTACAAG
* * ** * * * * *
32215357 CCTTAAGATTACAGTTAGGAGCCTTAGCTTTTACTAACTGTTTTAGAGGTTGCAGTACTGAACC-
1 CCTTAAGATTACAATT-GGAGCCTTAGCTCTCGCTAACTATTTTGGAGGTTACAGTATTAAACCT
*
32215421 AGCGAG
65 A-CAAG
* *
32215427 CCTTAATATTACAGTTGGA
1 CCTTAAGATTACAATTGGA
32215446 AGCGTGAGGT
Statistics
Matches: 234, Mismatches: 49, Indels: 33
0.74 0.16 0.10
Matches are distributed among these distances:
69 17 0.07
70 203 0.87
71 14 0.06
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (69 bp):
CCTTAAGATTACAATTGGAGCCTTAGCTCTCGCTAACTATTTTGGAGGTTACAGTATTAAACCTA
CAAG
Found at i:32222102 original size:15 final size:16
Alignment explanation
Indices: 32222077--32222107 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32222067 TTAATTCTTT
32222077 TTAATATTTATTTTAA
1 TTAATATTTATTTTAA
32222093 TTAA-ATTTATTTTAA
1 TTAATATTTATTTTAA
32222108 CCAAGTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTAATATTTATTTTAA
Found at i:32223945 original size:23 final size:23
Alignment explanation
Indices: 32223915--32223962 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
32223905 ACGTTTCTAA
32223915 AATGATGAATCAACCCTAATTTT
1 AATGATGAATCAACCCTAATTTT
32223938 AATGATGAATCAACCCTAATTTT
1 AATGATGAATCAACCCTAATTTT
32223961 AA
1 AA
32223963 CTCTTTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (23 bp):
AATGATGAATCAACCCTAATTTT
Found at i:32225049 original size:20 final size:21
Alignment explanation
Indices: 32225012--32225054 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
32225002 AGCTATTTTA
32225012 ATATTTATATTATTATATCAT
1 ATATTTATATTATTATATCAT
* *
32225033 ATATTTA-ATTTTTATATGAT
1 ATATTTATATTATTATATCAT
32225053 AT
1 AT
32225055 TTAATAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATATTTATATTATTATATCAT
Found at i:32225287 original size:18 final size:20
Alignment explanation
Indices: 32225255--32225297 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
32225245 AAAAAAATTT
*
32225255 AAAATAATTT-TTAAAATCC
1 AAAATAATTTATAAAAATCC
32225274 AAAAT-ATTTATAAAAATCC
1 AAAATAATTTATAAAAATCC
32225293 AAAAT
1 AAAAT
32225298 TTATATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATAATTTATAAAAATCC
Found at i:32227987 original size:18 final size:19
Alignment explanation
Indices: 32227953--32227988 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
32227943 AAAAAGATAT
*
32227953 TCAAAATAATTTTTAAAAC
1 TCAAAATAATTTATAAAAC
32227972 TCAAAAT-ATTTATAAAA
1 TCAAAATAATTTATAAAA
32227989 ATTTCAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (19 bp):
TCAAAATAATTTATAAAAC
Found at i:32228629 original size:29 final size:29
Alignment explanation
Indices: 32228589--32228646 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
32228579 CATTAACTAT
*
32228589 TTGAACTAATTAACAATATTATAAAAATA
1 TTGAACTAATTAACAACATTATAAAAATA
* *
32228618 TTGAACTGATTAATAACATTATAAAAATA
1 TTGAACTAATTAACAACATTATAAAAATA
32228647 AAGAAACCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.34
Consensus pattern (29 bp):
TTGAACTAATTAACAACATTATAAAAATA
Found at i:32235273 original size:24 final size:22
Alignment explanation
Indices: 32235216--32235278 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
32235206 TATACATGAT
32235216 ATTAAAATA-AAA-AAATT-AA
1 ATTAAAATATAAATAAATTAAA
*
32235235 ATTAAATTATAAATAAATTAAA
1 ATTAAAATATAAATAAATTAAA
*
32235257 ATTTAAACATATAAATATATTA
1 A-TTAAA-ATATAAATAAATTA
32235279 TATTAAGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 8 0.22
20 3 0.08
21 5 0.14
22 3 0.08
23 5 0.14
24 12 0.33
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
ATTAAAATATAAATAAATTAAA
Found at i:32237021 original size:19 final size:21
Alignment explanation
Indices: 32236988--32237027 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
32236978 TTGGGGGTAA
*
32236988 AGGGTGAAAAGT-AAAAGTTT
1 AGGGTGAAAAATAAAAAGTTT
32237008 AGGG-GAAAAATAAAAAGTTT
1 AGGGTGAAAAATAAAAAGTTT
32237028 TGGTGTTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.23
Consensus pattern (21 bp):
AGGGTGAAAAATAAAAAGTTT
Found at i:32239596 original size:14 final size:14
Alignment explanation
Indices: 32239543--32239597 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
32239533 CCATCCATCG
*
32239543 GAAGAGAGAAAGAA
1 GAAGAAAGAAAGAA
* *
32239557 -AAGAGAGAAAGGA
1 GAAGAAAGAAAGAA
32239570 GAAGAAA-ATAAGAA
1 GAAGAAAGA-AAGAA
32239584 GAAGAAAGAAAGAA
1 GAAGAAAGAAAGAA
32239598 AAAAAAGGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
13 13 0.37
14 21 0.60
15 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (14 bp):
GAAGAAAGAAAGAA
Found at i:32239845 original size:60 final size:60
Alignment explanation
Indices: 32239766--32239884 Score: 184
Period size: 60 Copynumber: 2.0 Consensus size: 60
32239756 TTGCTTTTTA
* * *
32239766 TAATTATTTTAAAATTAATTTGCTAGTAAATAAGGATTATGTTATAAATTTTTGTGTTTG
1 TAATTATTTTAAAATTAATTTACTAGTAAATAAGGATTAAGTTATAAATTGTTGTGTTTG
* * *
32239826 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTT
1 TAATTATTTTAAAATTAATTTACTAGTAAATAAGGATTAAGTTATAAATTGTTGTGTTT
32239885 AGTTTAGTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.35, C:0.01, G:0.13, T:0.51
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTACTAGTAAATAAGGATTAAGTTATAAATTGTTGTGTTTG
Found at i:32240812 original size:17 final size:18
Alignment explanation
Indices: 32240780--32240814 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
32240770 ATTTTATTTG
32240780 ATTTTTATTTATTTAAAA
1 ATTTTTATTTATTTAAAA
32240798 ATTTTTATTTA-TTAAAA
1 ATTTTTATTTATTTAAAA
32240815 TGTTGATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTTATTTATTTAAAA
Found at i:32242263 original size:21 final size:20
Alignment explanation
Indices: 32242234--32242277 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
32242224 GCATGTATAT
* * *
32242234 AAAACATAAAGTATAAAAATA
1 AAAAAATAAA-TAAAAAAACA
32242255 AAAAAATAAATAAAAAAACA
1 AAAAAATAAATAAAAAAACA
32242275 AAA
1 AAA
32242278 GTAACAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.14
Consensus pattern (20 bp):
AAAAAATAAATAAAAAAACA
Found at i:32244571 original size:98 final size:98
Alignment explanation
Indices: 32244402--32244591 Score: 335
Period size: 98 Copynumber: 1.9 Consensus size: 98
32244392 AGTACGGTCC
* *
32244402 ACTTGATGTACTTACCCCTATTATCCAATTTGCATAACAACTGTTCATATAGTTGGGGGTCCGCA
1 ACTTGATGTACTTACCCCTATTATCCAATTTGCATAACAACTGCTCATATAGTTGGGGGTCCACA
32244467 GTTTTAGCCATGCTGTATCGCAAACTTGATCGG
66 GTTTTAGCCATGCTGTATCGCAAACTTGATCGG
* *
32244500 ACTTGATGTACTTACCCTTATTATCCAATTTGCATAACACCTGCTCATATAGTTGGGGGTCCACA
1 ACTTGATGTACTTACCCCTATTATCCAATTTGCATAACAACTGCTCATATAGTTGGGGGTCCACA
*
32244565 GTTTTAGCCATGCTGTATCGCGAACTT
66 GTTTTAGCCATGCTGTATCGCAAACTT
32244592 TGTTGGACGA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 87 1.00
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (98 bp):
ACTTGATGTACTTACCCCTATTATCCAATTTGCATAACAACTGCTCATATAGTTGGGGGTCCACA
GTTTTAGCCATGCTGTATCGCAAACTTGATCGG
Found at i:32245422 original size:6 final size:6
Alignment explanation
Indices: 32245411--32245440 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
32245401 GCATCATGCA
32245411 CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG
1 CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG
32245441 ACGGAACTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (6 bp):
CCAGAG
Found at i:32245686 original size:33 final size:33
Alignment explanation
Indices: 32245581--32245691 Score: 141
Period size: 33 Copynumber: 3.4 Consensus size: 33
32245571 TTCATCCTAG
** *
32245581 CTCGTATCCACCTTAGTACTTTGCTCCTTCCAA
1 CTCGTATCCACCTTAGTACTCCGCTCCTTCCGA
* * *
32245614 CTCATATCTACCTTAGTACTCCGCTCCTTCCGG
1 CTCGTATCCACCTTAGTACTCCGCTCCTTCCGA
* *
32245647 CTCGTATCCACTTTAGTACTCCGCTCCTTCTGA
1 CTCGTATCCACCTTAGTACTCCGCTCCTTCCGA
*
32245680 CCCGTATCCACC
1 CTCGTATCCACC
32245692 ACCATACTCC
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 65 1.00
ACGTcount: A:0.16, C:0.40, G:0.11, T:0.33
Consensus pattern (33 bp):
CTCGTATCCACCTTAGTACTCCGCTCCTTCCGA
Found at i:32250364 original size:31 final size:31
Alignment explanation
Indices: 32250245--32250368 Score: 96
Period size: 31 Copynumber: 3.9 Consensus size: 31
32250235 TTTTCTTTGA
* *
32250245 AAATTT-TATTTTTACATTTTTTTAAAAATTT
1 AAATTTATATTTTTATA-TTTTTTAAAATTTT
32250276 AAA--TACTATTTTTA-ATTTTTATAAAATTTT
1 AAATTTA-TATTTTTATATTTTT-TAAAATTTT
* *
32250306 CAATTTTTATATATTCTTATGACTTTTT-AAATTTT
1 -AA-ATTTATAT-TT-TTAT-ATTTTTTAAAATTTT
32250341 AAATTTATATATTTTATATTTTTTAAAA
1 AAATTTATAT-TTTTATATTTTTTAAAA
32250369 AATATTTTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 23
0.73 0.05 0.22
Matches are distributed among these distances:
29 6 0.08
30 9 0.12
31 19 0.25
32 7 0.09
33 13 0.17
34 6 0.08
35 10 0.13
36 1 0.01
37 5 0.07
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (31 bp):
AAATTTATATTTTTATATTTTTTAAAATTTT
Found at i:32250373 original size:23 final size:24
Alignment explanation
Indices: 32250347--32250393 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
32250337 TTTTAAATTT
32250347 ATATATTTTATAT-TTTTTAAAAA
1 ATATATTTTATATGTTTTTAAAAA
* *
32250370 ATATTTTTTTTATGTTTTTAAAAA
1 ATATATTTTATATGTTTTTAAAAA
32250394 TATTTGAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (24 bp):
ATATATTTTATATGTTTTTAAAAA
Found at i:32250405 original size:23 final size:24
Alignment explanation
Indices: 32250360--32250405 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
32250350 TATTTTATAT
***
32250360 TTTTTAAAAAATATTTTTTTTATG
1 TTTTTAAAAAATATTTGAATTATG
32250384 TTTTT-AAAAATATTTGAATTAT
1 TTTTTAAAAAATATTTGAATTAT
32250406 TTATATATTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (24 bp):
TTTTTAAAAAATATTTGAATTATG
Found at i:32253123 original size:71 final size:71
Alignment explanation
Indices: 32252999--32253147 Score: 201
Period size: 71 Copynumber: 2.1 Consensus size: 71
32252989 AACCAAAGTG
* * * * *
32252999 CTACTGATACCTTGAGGACTTCTACCAAAACAAGTCAAGTCAGTAGCCAAAGTTCAGCAT-CTCT
1 CTACCGATACCTTAAAGACTTCTAACAAAACAAGTCAAGTCAGTAGCCAAAGTTCAACATCCTC-
*
32253063 TGCACTT
65 TACACTT
* *
32253070 CTACCGATACCTTAAAGACTTCTAACAAAATAAGTCAAGTCAGTAGCCGAAGTTCAACATCCTCT
1 CTACCGATACCTTAAAGACTTCTAACAAAACAAGTCAAGTCAGTAGCCAAAGTTCAACATCCTCT
*
32253135 ACAGTT
66 ACACTT
32253141 CTACCGA
1 CTACCGA
32253148 CACTCTGATG
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
71 65 0.96
72 3 0.04
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.26
Consensus pattern (71 bp):
CTACCGATACCTTAAAGACTTCTAACAAAACAAGTCAAGTCAGTAGCCAAAGTTCAACATCCTCT
ACACTT
Found at i:32256451 original size:43 final size:43
Alignment explanation
Indices: 32256403--32256501 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 43
32256393 TATCCTGAAT
* *
32256403 ATGGTCTTACATGCTAACACA-TATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGCTAACACACT-TCGATGCCAATGTCCCAGAC
* ** *
32256446 ATGGTCTTACACGTTTTCTCACTTCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGCTAACACACTTCGATGCCAATGTCCCAGAC
32256489 ATGGTCTTACACG
1 ATGGTCTTACACG
32256502 AAATTACACC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
43 48 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACGCTAACACACTTCGATGCCAATGTCCCAGAC
Found at i:32256694 original size:16 final size:16
Alignment explanation
Indices: 32256669--32256704 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
32256659 CATTTTTGGG
*
32256669 CATTTTTTCATCAAAT
1 CATTTATTCATCAAAT
32256685 CATTTATTCATCAAAT
1 CATTTATTCATCAAAT
32256701 CATT
1 CATT
32256705 CAATTCAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
CATTTATTCATCAAAT
Found at i:32259166 original size:20 final size:20
Alignment explanation
Indices: 32259121--32259166 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
32259111 TCATCGTGGA
*
32259121 AGAAAGTTTTGAGGTTTGGT
1 AGAAAGTTTTAAGGTTTGGT
* *
32259141 ACAAAGTTTTAAGGTTTTGT
1 AGAAAGTTTTAAGGTTTGGT
32259161 AGAAAG
1 AGAAAG
32259167 GGTAAGTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.02, G:0.28, T:0.37
Consensus pattern (20 bp):
AGAAAGTTTTAAGGTTTGGT
Found at i:32261344 original size:43 final size:43
Alignment explanation
Indices: 32261283--32261373 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
32261273 CTAAATTTTT
* * * *
32261283 CGCTATAGAATATGACCTTTAGCGGCATTTTC-CCTACAAACGC
1 CGCTAAAGAACATGACCTTTAGAGGCACTTTCTCC-ACAAACGC
* *
32261326 CGCTAAAGAACATGACCTTTAGAGGCGCTTTCTCCGCAAACGC
1 CGCTAAAGAACATGACCTTTAGAGGCACTTTCTCCACAAACGC
32261369 CGCTA
1 CGCTA
32261374 CCTTTAGCGG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 39 0.95
44 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (43 bp):
CGCTAAAGAACATGACCTTTAGAGGCACTTTCTCCACAAACGC
Found at i:32269781 original size:9 final size:9
Alignment explanation
Indices: 32269767--32269885 Score: 86
Period size: 9 Copynumber: 13.4 Consensus size: 9
32269757 TATTTATGTA
32269767 TTATGTAAG
1 TTATGTAAG
32269776 TTATGTAAG
1 TTATGTAAG
*
32269785 TTATGATATG
1 TTATG-TAAG
* * *
32269795 ATATAT-AT
1 TTATGTAAG
*
32269803 TTATGTAGG
1 TTATGTAAG
*
32269812 TTATGTAAA
1 TTATGTAAG
32269821 TTATGTAAG
1 TTATGTAAG
32269830 TTATGTAAG
1 TTATGTAAG
*
32269839 TTGTG-ATA-
1 TTATGTA-AG
* * *
32269847 TGATTTATAT
1 TTATGTA-AG
32269857 TTATGT-A-
1 TTATGTAAG
32269864 TTATGTAAG
1 TTATGTAAG
32269873 TTATGTAAG
1 TTATGTAAG
32269882 TTAT
1 TTAT
32269886 TATCCAAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
7 6 0.07
8 9 0.11
9 60 0.71
10 10 0.12
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (9 bp):
TTATGTAAG
Found at i:32269807 original size:27 final size:27
Alignment explanation
Indices: 32269776--32269863 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
32269766 ATTATGTAAG
32269776 TTATGTAAGTTATGATATGATATATAT
1 TTATGTAAGTTATGATATGATATATAT
* * * * *
32269803 TTATGTAGGTTATGTAAATTATGTA-AG
1 TTATGTAAGTTATG-ATATGATATATAT
* *
32269830 TTATGTAAGTTGTGATATGATTTATAT
1 TTATGTAAGTTATGATATGATATATAT
32269857 TTATGTA
1 TTATGTA
32269864 TTATGTAAGT
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
26 7 0.15
27 34 0.71
28 7 0.15
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (27 bp):
TTATGTAAGTTATGATATGATATATAT
Found at i:32269830 original size:54 final size:52
Alignment explanation
Indices: 32269766--32269885 Score: 195
Period size: 54 Copynumber: 2.3 Consensus size: 52
32269756 ATATTTATGT
32269766 ATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAGGTTATGTAA
1 ATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTA--TTATGTAA
* *
32269820 ATTATGTAAGTTATGTAAGTTGTGATATGATTTATATTTATGTATTATGTAA
1 ATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAA
*
32269872 GTTATGTAAGTTAT
1 ATTATGTAAGTTAT
32269886 TATCCAAATT
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
52 21 0.33
54 42 0.67
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (52 bp):
ATTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAA
Found at i:32269903 original size:43 final size:42
Alignment explanation
Indices: 32269820--32269931 Score: 106
Period size: 43 Copynumber: 2.6 Consensus size: 42
32269810 GGTTATGTAA
* *
32269820 ATTATGTAAGTTATGTAAGTTGTGATATGATTTATATTTATGT
1 ATTATGTAAGTTATGTAAGTTATGATATAATTTATATTTAT-T
* *
32269863 ATTATGTAAGTTATGTAAGTTATTATCCA-AATTT-TTTTTATT
1 ATTATGTAAGTTATGTAAGTTATGAT--ATAATTTATATTTATT
*
32269905 CTT-T-TAATGTTTATGTAAGTTATGATA
1 ATTATGTAA-G-TTATGTAAGTTATGATA
32269932 ATCATAAACT
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
40 4 0.07
41 2 0.03
42 18 0.31
43 30 0.51
44 4 0.07
45 1 0.02
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53
Consensus pattern (42 bp):
ATTATGTAAGTTATGTAAGTTATGATATAATTTATATTTATT
Found at i:32269952 original size:35 final size:35
Alignment explanation
Indices: 32269905--32269971 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
32269895 TTTTTTTATT
*
32269905 CTTTTAATGTTTATGTAAGTTATGATAATCATAAA
1 CTTTAAATGTTTATGTAAGTTATGATAATCATAAA
*
32269940 CTTTAAATGTTTATGTAAGTTATGATTATCAT
1 CTTTAAATGTTTATGTAAGTTATGATAATCAT
32269972 CTTTAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.48
Consensus pattern (35 bp):
CTTTAAATGTTTATGTAAGTTATGATAATCATAAA
Found at i:32271505 original size:2 final size:2
Alignment explanation
Indices: 32271498--32271524 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32271488 AAGCATAAGA
32271498 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
32271525 ACGCCGTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32271680 original size:24 final size:24
Alignment explanation
Indices: 32271648--32271700 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
32271638 AGTATTTTAT
32271648 AATATAATATTAATTTTAGATACA
1 AATATAATATTAATTTTAGATACA
*
32271672 AATATAATATTAATTTTAGTTACA
1 AATATAATATTAATTTTAGATACA
32271696 AATAT
1 AATAT
32271701 TATACAAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (24 bp):
AATATAATATTAATTTTAGATACA
Found at i:32272240 original size:17 final size:17
Alignment explanation
Indices: 32272220--32272260 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
32272210 ACATACCTCT
*
32272220 TAAAGTCCACAAGGAAG
1 TAAAGGCCACAAGGAAG
**
32272237 TAAAGGCTGCAAGGAAG
1 TAAAGGCCACAAGGAAG
32272254 TAAAGGC
1 TAAAGGC
32272261 TGCAAGTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.29, T:0.12
Consensus pattern (17 bp):
TAAAGGCCACAAGGAAG
Found at i:32272261 original size:17 final size:17
Alignment explanation
Indices: 32272229--32272266 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
32272219 TTAAAGTCCA
32272229 CAAGGAAGTAAAGGCTG
1 CAAGGAAGTAAAGGCTG
32272246 CAAGGAAGTAAAGGCTG
1 CAAGGAAGTAAAGGCTG
32272263 CAAG
1 CAAG
32272267 TCCTTGGGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.42, C:0.13, G:0.34, T:0.11
Consensus pattern (17 bp):
CAAGGAAGTAAAGGCTG
Found at i:32273558 original size:23 final size:23
Alignment explanation
Indices: 32273506--32273565 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 23
32273496 TTGGGGAAAA
**
32273506 GAAATTGGGGAAGAATAGCTTAGG
1 GAAATTGGGGAA-AATAAATTAGG
32273530 GAAATTAGGGGAAAATAAATT-GG
1 GAAATT-GGGGAAAATAAATTAGG
32273553 GAAATTGGGGAAA
1 GAAATTGGGGAAA
32273566 TGAAATCGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 7 0.21
23 8 0.24
24 12 0.36
25 6 0.18
ACGTcount: A:0.43, C:0.02, G:0.35, T:0.20
Consensus pattern (23 bp):
GAAATTGGGGAAAATAAATTAGG
Found at i:32273571 original size:22 final size:24
Alignment explanation
Indices: 32273528--32273581 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
32273518 GAATAGCTTA
*
32273528 GGGAAATTAGGGGAAAATAAAT-T
1 GGGAAATTAGGGGAAAATAAATCG
32273551 GGGAAATT-GGGG-AAATGAAATCG
1 GGGAAATTAGGGGAAAAT-AAATCG
32273574 GGGAAATT
1 GGGAAATT
32273582 TGACTTGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 4 0.14
22 8 0.29
23 16 0.57
ACGTcount: A:0.43, C:0.02, G:0.35, T:0.20
Consensus pattern (24 bp):
GGGAAATTAGGGGAAAATAAATCG
Found at i:32273882 original size:116 final size:116
Alignment explanation
Indices: 32273669--32274318 Score: 713
Period size: 116 Copynumber: 5.7 Consensus size: 116
32273659 GCGTTTATCA
* *
32273669 AAAACGCCACTAACACATAACCTTTTGCGGCGTTTTAGTCAAAATGCCACTAAAAATGCAGCTAC
1 AAAACGCCACTAACGCATAACCTTTTGCGGCGTTTTAGTCAAAATGCCACTAAAAATGCAGCTAA
* * *
32273734 AAACGACGCCGTTTTGC-AAATTGTTAATACATATTCGTGGCATTTTTGGTG
66 AAAGGACACCGTTTTGCAAAATT-TTAATACATATTCGCGGCATTTTTGGTG
* * *
32273785 AAAACGCCACTAACGCATAACCTTTTGCGGCATTTTAGTCAAAACGCCACTAAAAGTGCAGCTAA
1 AAAACGCCACTAACGCATAACCTTTTGCGGCGTTTTAGTCAAAATGCCACTAAAAATGCAGCTAA
* * * *
32273850 AAAGGGCACCGTTTTACAAAATTTTAAAACATATTCGCGGCGTTTTTGGTG
66 AAAGGACACCGTTTTGCAAAATTTTAATACATATTCGCGGCATTTTTGGTG
* * * *
32273901 AAAATGCCACTAACGCATAACCTTTGATG-GG-GTTGTAGCCAAAACGCCACTAAAAATGCAGCT
1 AAAACGCCACTAACGCATAACCTTT--TGCGGCGTTTTAGTCAAAATGCCACTAAAAATGCAGCT
* * * *
32273964 AAAAATGACACCATTTTGCAAACTATTAATACATATTCGCGGCATTTTTGGTG
64 AAAAAGGACACCGTTTTGCAAAATTTTAATACATATTCGCGGCATTTTTGGTG
* **
32274017 AAAAACGCCACTAACGCATAACCTTTTACGGCGTTTTAGTCAAAATGCCACTAAAAACACAGCTA
1 -AAAACGCCACTAACGCATAACCTTTTGCGGCGTTTTAGTCAAAATGCCACTAAAAATGCAGCTA
* * * *
32274082 AAAAGTACACCGTTTTGCAAACTCTTAATACATATTCGCGGTATTTTTGGTG
65 AAAAGGACACCGTTTTGCAAAATTTTAATACATATTCGCGGCATTTTTGGTG
* * * * *
32274134 AAAATGCCACTAATGCATAACCTTTTGCAGCGTTTTAGCCAAAATGCCACTAAAAA--C-GGT--
1 AAAACGCCACTAACGCATAACCTTTTGCGGCGTTTTAGTCAAAATGCCACTAAAAATGCAGCTAA
* * * * **
32274194 ----G---TCGTTTTTCAAACTCTTAATACATATTCGCACCATTTTTGGTG
66 AAAGGACACCGTTTTGCAAAATTTTAATACATATTCGCGGCATTTTTGGTG
* * * * * **
32274238 AAAACGCCACTAA--CACAACCTTTTGCAGCGTTTTAGTCGAAACGCCGCTAAAAACACAGCTAA
1 AAAACGCCACTAACGCATAACCTTTTGCGGCGTTTTAGTCAAAATGCCACTAAAAATGCAGCTAA
* * *
32274301 AAACGACAACATTTTGCA
66 AAAGGACACCGTTTTGCA
32274319 TTCTTTTAAT
Statistics
Matches: 457, Mismatches: 59, Indels: 38
0.82 0.11 0.07
Matches are distributed among these distances:
102 36 0.08
104 51 0.11
105 2 0.00
111 1 0.00
113 2 0.00
114 8 0.02
115 1 0.00
116 248 0.54
117 106 0.23
118 2 0.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (116 bp):
AAAACGCCACTAACGCATAACCTTTTGCGGCGTTTTAGTCAAAATGCCACTAAAAATGCAGCTAA
AAAGGACACCGTTTTGCAAAATTTTAATACATATTCGCGGCATTTTTGGTG
Found at i:32274120 original size:233 final size:229
Alignment explanation
Indices: 32273669--32274308 Score: 775
Period size: 233 Copynumber: 2.8 Consensus size: 229
32273659 GCGTTTATCA
* * *
32273669 AAAACGCCACTAACACATAACCTTTTGCGGCGTTTTAGTCAAAATGCCACTAAAAATGCAGCTAC
1 AAAATGCCACTAACGCATAACCTTTTGCGG-GTTTTAGCCAAAATGCCACTAAAAATGCAGCTA-
* * * *
32273734 AAACGACGCCGTTTTGCAAATTGTTAATACATATTCGTGGCATTTTTGGTGAAAACGCCACTAAC
64 AAATGAC-CCGTTTTGCAAACTATTAATACATATTCGCGGCATTTTTGGTGAAAACGCCACTAAC
* *** *
32273799 GCATAACCTTTTGCGGCATTTTAGTCAAAACGCCACTAAAAGTGCAGCTAAAAAGGGCACCGTTT
128 GCATAACCTTTTGCGGCGTTTTAGTCAAAACGCCACTAAAAACACAGCTAAAAAGGACACCGTTT
* *
32273864 TACAAAATTTTAAAACATATTCGCGGCGTTTTTGGTG
193 TACAAAATCTTAAAACATATTCGCGGCATTTTTGGTG
* *
32273901 AAAATGCCACTAACGCATAACCTTTGATG-GGGTTGTAGCCAAAACGCCACTAAAAATGCAGCTA
1 AAAATGCCACTAACGCATAACCTTT--TGCGGGTTTTAGCCAAAATGCCACTAAAAATGCAGCT-
*
32273965 AAAATGACACCATTTTGCAAACTATTAATACATATTCGCGGCATTTTTGGTGAAAAACGCCACTA
63 AAAATGAC-CCGTTTTGCAAACTATTAATACATATTCGCGGCATTTTTGGTG-AAAACGCCACTA
* * *
32274030 ACGCATAACCTTTTACGGCGTTTTAGTCAAAATGCCACTAAAAACACAGCTAAAAAGTACACCGT
126 ACGCATAACCTTTTGCGGCGTTTTAGTCAAAACGCCACTAAAAACACAGCTAAAAAGGACACCGT
* * * *
32274095 TTTGCAAACTCTTAATACATATTCGCGGTATTTTTGGTG
191 TTTACAAAATCTTAAAACATATTCGCGGCATTTTTGGTG
* *
32274134 AAAATGCCACTAATGCATAACCTTTTGCAGCGTTTTAGCCAAAATGCCACTAAAAA--C-G----
1 AAAATGCCACTAACGCATAACCTTTTGC-GGGTTTTAGCCAAAATGCCACTAAAAATGCAGCTAA
* * * * **
32274192 -GTG--TCGTTTTTCAAACTCTTAATACATATTCGCACCATTTTTGGTGAAAACGCCACTAA--C
65 AATGACCCGTTTTGCAAACTATTAATACATATTCGCGGCATTTTTGGTGAAAACGCCACTAACGC
* * * * *
32274252 ACAACCTTTTGCAGCGTTTTAGTCGAAACGCCGCTAAAAACACAGCTAAAAACGACA
130 ATAACCTTTTGCGGCGTTTTAGTCAAAACGCCACTAAAAACACAGCTAAAAAGGACA
32274309 ACATTTTGCA
Statistics
Matches: 358, Mismatches: 44, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
218 50 0.14
220 13 0.04
221 37 0.10
224 2 0.01
230 1 0.00
231 3 0.01
232 97 0.27
233 153 0.43
234 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (229 bp):
AAAATGCCACTAACGCATAACCTTTTGCGGGTTTTAGCCAAAATGCCACTAAAAATGCAGCTAAA
ATGACCCGTTTTGCAAACTATTAATACATATTCGCGGCATTTTTGGTGAAAACGCCACTAACGCA
TAACCTTTTGCGGCGTTTTAGTCAAAACGCCACTAAAAACACAGCTAAAAAGGACACCGTTTTAC
AAAATCTTAAAACATATTCGCGGCATTTTTGGTG
Found at i:32274834 original size:7 final size:7
Alignment explanation
Indices: 32274822--32274883 Score: 70
Period size: 7 Copynumber: 8.6 Consensus size: 7
32274812 GAAATTTGTT
32274822 TTTAAGG
1 TTTAAGG
32274829 TTTAAGG
1 TTTAAGG
32274836 TTTTAAGG
1 -TTTAAGG
*
32274844 TTTATGG
1 TTTAAGG
*
32274851 TTTTAGG
1 TTTAAGG
*
32274858 TTTTAGGG
1 -TTTAAGG
32274866 TTTAAGG
1 TTTAAGG
*
32274873 TTTAGGG
1 TTTAAGG
32274880 TTTA
1 TTTA
32274884 GAGAAAGCCA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
7 34 0.74
8 12 0.26
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (7 bp):
TTTAAGG
Found at i:32274841 original size:15 final size:15
Alignment explanation
Indices: 32274821--32274882 Score: 81
Period size: 15 Copynumber: 4.2 Consensus size: 15
32274811 CGAAATTTGT
32274821 TTTTAAGGTTTAAGG
1 TTTTAAGGTTTAAGG
*
32274836 TTTTAAGGTTTATGG
1 TTTTAAGGTTTAAGG
*
32274851 TTTT-AGGTTTTAGG
1 TTTTAAGGTTTAAGG
* *
32274865 GTTTAAGGTTTAGGG
1 TTTTAAGGTTTAAGG
32274880 TTT
1 TTT
32274883 AGAGAAAGCC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
14 11 0.28
15 28 0.72
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (15 bp):
TTTTAAGGTTTAAGG
Found at i:32274852 original size:22 final size:22
Alignment explanation
Indices: 32274822--32274882 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
32274812 GAAATTTGTT
32274822 TTTAAGGTTTAAGGTTTTAAGG
1 TTTAAGGTTTAAGGTTTTAAGG
* * *
32274844 TTTATGGTTTTAGGTTTTAGGG
1 TTTAAGGTTTAAGGTTTTAAGG
*
32274866 TTTAAGGTTTAGGGTTT
1 TTTAAGGTTTAAGGTTT
32274883 AGAGAAAGCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.51
Consensus pattern (22 bp):
TTTAAGGTTTAAGGTTTTAAGG
Found at i:32275735 original size:18 final size:18
Alignment explanation
Indices: 32275700--32275735 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
32275690 TCACATGCCA
*
32275700 AAGTGAAAAGTTATTTTT
1 AAGTGAAAAGTGATTTTT
32275718 AAGTGAAAAAGTGATTTT
1 AAGTG-AAAAGTGATTTT
32275736 GTGGTCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (18 bp):
AAGTGAAAAGTGATTTTT
Found at i:32275892 original size:47 final size:47
Alignment explanation
Indices: 32275782--32275895 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 47
32275772 AGGTGGAATA
* *
32275782 ATGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCACAAATTTTATT
1 ATGTGGCAG-TTATCTACAAAAGTGGTGGCTTGTCCACAAATTTGATT
* * *
32275830 ATGTGGTAGTATATCTACAAAAGTGGTTGCTTGTCCA-TAATTTGATT
1 ATGTGGCAGT-TATCTACAAAAGTGGTGGCTTGTCCACAAATTTGATT
32275877 ATGTGGCAGCTTATCTACA
1 ATGTGGCAG-TTATCTACA
32275896 TTACAGTGAC
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
47 25 0.43
48 33 0.57
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (47 bp):
ATGTGGCAGTTATCTACAAAAGTGGTGGCTTGTCCACAAATTTGATT
Found at i:32280644 original size:15 final size:14
Alignment explanation
Indices: 32280624--32280657 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32280614 CCACTTTTAT
*
32280624 TCCCTCATTCCCTCA
1 TCCCTCATT-CATCA
32280639 TCCCTCATTCATCA
1 TCCCTCATTCATCA
32280653 TCCCT
1 TCCCT
32280658 TTTCTCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.15, C:0.50, G:0.00, T:0.35
Consensus pattern (14 bp):
TCCCTCATTCATCA
Found at i:32285047 original size:155 final size:155
Alignment explanation
Indices: 32284765--32285072 Score: 571
Period size: 155 Copynumber: 2.0 Consensus size: 155
32284755 TTTTCAACCC
* *
32284765 TTCATCAACAACATCACGAGAATTCGAAGACATCTTAACTACCACACATAAACATAGTTTAGCAA
1 TTCATCAACAACATCACGAGAATTCGAAGACATCTTAACTACCACACACAAACACAGTTTAGCAA
32284830 AACTATAAGAGGCTAGCAAAAAACATGTAACATGCATGTTGGGGCGTGACTCAACCTTTGGTCAT
66 AACTATAAGAGGCTAGCAAAAAACATGTAACATGCATGTTGGGGCGTGACTCAACCTTTGGTCAT
32284895 CCAAGAATCGGTTAAACCTAGGCCT
131 CCAAGAATCGGTTAAACCTAGGCCT
32284920 TTCATCAACAACATCACGAGAATTCGAAGACATCTTAACTACCACACACAAACACAGTTTAGCAA
1 TTCATCAACAACATCACGAGAATTCGAAGACATCTTAACTACCACACACAAACACAGTTTAGCAA
* *
32284985 AACTATAAGAGGCTAGCAAAAAACATGTAACGTGCATGTTGGGGTGTGACTCAACCTTTGGTCAT
66 AACTATAAGAGGCTAGCAAAAAACATGTAACATGCATGTTGGGGCGTGACTCAACCTTTGGTCAT
*
32285050 CCGAGAATCGGTTAAACCTAGGC
131 CCAAGAATCGGTTAAACCTAGGC
32285073 TCTGATATCA
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
155 148 1.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (155 bp):
TTCATCAACAACATCACGAGAATTCGAAGACATCTTAACTACCACACACAAACACAGTTTAGCAA
AACTATAAGAGGCTAGCAAAAAACATGTAACATGCATGTTGGGGCGTGACTCAACCTTTGGTCAT
CCAAGAATCGGTTAAACCTAGGCCT
Found at i:32286671 original size:27 final size:27
Alignment explanation
Indices: 32286641--32286701 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
32286631 AGAAAAGCCT
32286641 TTGTGGCAAAATAT-GAAAGGAATGCCC
1 TTGTGGCAAAAT-TCGAAAGGAATGCCC
* * *
32286668 TTGTGGAAAAATTCGTAAGGAATGCCT
1 TTGTGGCAAAATTCGAAAGGAATGCCC
32286695 TTGTGGC
1 TTGTGGC
32286702 GCACTCATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (27 bp):
TTGTGGCAAAATTCGAAAGGAATGCCC
Found at i:32294299 original size:28 final size:27
Alignment explanation
Indices: 32294215--32294300 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
32294205 AAAATTTGTT
** *
32294215 AAATTACTGAAATACTCTCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
*
32294242 AAATTATCAAAATACCCTCGAAGGGTA
1 AAATTACCAAAATACCCTCGAAGGGTA
32294269 AAATTACCAAAATACCCCTCGAAGAGG-A
1 AAATTACCAAAATA-CCCTCGAAG-GGTA
32294297 AAAT
1 AAAT
32294301 GAACGAAATA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
27 36 0.69
28 14 0.27
29 2 0.04
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGAAGGGTA
Found at i:32294309 original size:28 final size:28
Alignment explanation
Indices: 32294231--32294311 Score: 94
Period size: 27 Copynumber: 2.9 Consensus size: 28
32294221 CTGAAATACT
* *
32294231 CTCGAAGGGTAAAATTATCAAAATA-CC
1 CTCGAAGGGTAAAATGAACAAAATACCC
* *
32294258 CTCGAAGGGTAAAATTACCAAAATACCC
1 CTCGAAGGGTAAAATGAACAAAATACCC
*
32294286 CTCGAAGAGG-AAAATGAACGAAATAC
1 CTCGAAG-GGTAAAATGAACAAAATAC
32294312 GCTCATGGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
27 24 0.50
28 22 0.46
29 2 0.04
ACGTcount: A:0.46, C:0.20, G:0.17, T:0.17
Consensus pattern (28 bp):
CTCGAAGGGTAAAATGAACAAAATACCC
Found at i:32294529 original size:22 final size:22
Alignment explanation
Indices: 32294501--32294563 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 22
32294491 GGAAGTGTAT
32294501 GGCTTATAGTCGTTCTGTTCAA
1 GGCTTATAGTCGTTCTGTTCAA
* * * * *
32294523 GGCTTATTGTCTTTCTTTTTAT
1 GGCTTATAGTCGTTCTGTTCAA
* *
32294545 GGCTTTTAGCCGTTCTGTT
1 GGCTTATAGTCGTTCTGTT
32294564 AACTGGCAGC
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.11, C:0.17, G:0.21, T:0.51
Consensus pattern (22 bp):
GGCTTATAGTCGTTCTGTTCAA
Found at i:32299029 original size:45 final size:45
Alignment explanation
Indices: 32298980--32299065 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
32298970 ACCTATTTAC
*
32298980 CATGATGTCATAGCGTCTTTCAGCCATGGTCTTACTCATTTCCGT
1 CATGATGTCATAGCATCTTTCAGCCATGGTCTTACTCATTTCCGT
* * *
32299025 CATGATGTGATAGCATCTTTTAGCTATGGTCTTACTCATTT
1 CATGATGTCATAGCATCTTTCAGCCATGGTCTTACTCATTT
32299066 TAGGCGTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.41
Consensus pattern (45 bp):
CATGATGTCATAGCATCTTTCAGCCATGGTCTTACTCATTTCCGT
Found at i:32300604 original size:34 final size:34
Alignment explanation
Indices: 32300566--32300785 Score: 174
Period size: 34 Copynumber: 6.4 Consensus size: 34
32300556 CTACCTTTGC
*
32300566 GCCCAGCGCTAGTCGGATAACTGACGATGGTTGT
1 GCCCAGCACTAGTCGGATAACTGACGATGGTTGT
* * *
32300600 GCCCAGCACTAGTCGGATAACCGACAATGGTTAT
1 GCCCAGCACTAGTCGGATAACTGACGATGGTTGT
* * ** * * *
32300634 GCCCAGCACTAGTTGAACGAGTCGACGATGTTTTGC
1 GCCCAGCACTAGTCGGATAACT-GACGATG-GTTGT
* * * *
32300670 GCCCAGCGCTATTCGAATAACTGACGATAGTTGT
1 GCCCAGCACTAGTCGGATAACTGACGATGGTTGT
* * *** *
32300704 GCCCAGCACTAGTCAGATAAACTGACAAAAATTGC
1 GCCCAGCACTAGTCGGAT-AACTGACGATGGTTGT
* * *
32300739 GCCCAG--CTAGTTGGAGAACCGACGATGGTTGT
1 GCCCAGCACTAGTCGGATAACTGACGATGGTTGT
*
32300771 GCCCTGCACTAGTCG
1 GCCCAGCACTAGTCG
32300786 AATGAATCGA
Statistics
Matches: 139, Mismatches: 42, Indels: 10
0.73 0.22 0.05
Matches are distributed among these distances:
32 15 0.11
33 7 0.05
34 69 0.50
35 30 0.22
36 18 0.13
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.22
Consensus pattern (34 bp):
GCCCAGCACTAGTCGGATAACTGACGATGGTTGT
Found at i:32301220 original size:49 final size:49
Alignment explanation
Indices: 32301150--32301250 Score: 193
Period size: 49 Copynumber: 2.1 Consensus size: 49
32301140 CCACTCGATT
32301150 TTTTATTTAAAAACAATAATTTAATTTAATAATTCGACCACGAAGAATA
1 TTTTATTTAAAAACAATAATTTAATTTAATAATTCGACCACGAAGAATA
*
32301199 TTTTATTTAAAAACAATAATTTAATTTAATAATTCGACCACTAAGAATA
1 TTTTATTTAAAAACAATAATTTAATTTAATAATTCGACCACGAAGAATA
32301248 TTT
1 TTT
32301251 ATACTCAAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.40
Consensus pattern (49 bp):
TTTTATTTAAAAACAATAATTTAATTTAATAATTCGACCACGAAGAATA
Found at i:32303892 original size:25 final size:25
Alignment explanation
Indices: 32303858--32303906 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
32303848 CTAACACAGA
32303858 GTAAGCATTTAAGCTTAGTAAGTTT
1 GTAAGCATTTAAGCTTAGTAAGTTT
32303883 GTAAGCATTTAAGCTTAGTAAGTT
1 GTAAGCATTTAAGCTTAGTAAGTT
32303907 CGTATATCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
GTAAGCATTTAAGCTTAGTAAGTTT
Found at i:32304331 original size:25 final size:24
Alignment explanation
Indices: 32304311--32304408 Score: 81
Period size: 25 Copynumber: 4.0 Consensus size: 24
32304301 AAGAGCTATG
*
32304311 AATCGGTATGCTCACTCGAGCTGT
1 AATCGGTATGCTCACACGAGCTGT
*
32304335 AGATCGGTATGCTCTCACGAGCTGT
1 A-ATCGGTATGCTCACACGAGCTGT
* * *
32304360 AAATCAGTATGCCTTA-ACGACCTGT
1 -AATCGGTATG-CTCACACGAGCTGT
* **
32304385 AAATCAGTATGCTTTCACGAGCTG
1 -AATCGGTATGCTCACACGAGCTG
32304409 CAGGTCAGAA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
24 4 0.06
25 55 0.89
26 3 0.05
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
AATCGGTATGCTCACACGAGCTGT
Found at i:32304416 original size:25 final size:25
Alignment explanation
Indices: 32304327--32304408 Score: 110
Period size: 25 Copynumber: 3.3 Consensus size: 25
32304317 TATGCTCACT
* * *
32304327 CGAGCTGTAGATCGGTATGCTCTCA
1 CGAGCTGTAAATCAGTATGCTTTCA
* *
32304352 CGAGCTGTAAATCAGTATGCCTTAA
1 CGAGCTGTAAATCAGTATGCTTTCA
*
32304377 CGACCTGTAAATCAGTATGCTTTCA
1 CGAGCTGTAAATCAGTATGCTTTCA
32304402 CGAGCTG
1 CGAGCTG
32304409 CAGGTCAGAA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (25 bp):
CGAGCTGTAAATCAGTATGCTTTCA
Found at i:32306517 original size:13 final size:13
Alignment explanation
Indices: 32306499--32306524 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32306489 TCTATCTGAT
32306499 GTGCTAAAATGCA
1 GTGCTAAAATGCA
32306512 GTGCTAAAATGCA
1 GTGCTAAAATGCA
32306525 ACCGCGTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
GTGCTAAAATGCA
Found at i:32313447 original size:25 final size:25
Alignment explanation
Indices: 32313285--32313448 Score: 106
Period size: 25 Copynumber: 6.7 Consensus size: 25
32313275 AGCCATGCAA
** *
32313285 CGGGAAGCTCATGTGAGTCATGTAA-
1 CGGGAAGCTCATAAGAGCCAT-TAAT
* * *
32313310 CGGAAAGCTCATAAGAGTCA-TATT
1 CGGGAAGCTCATAAGAGCCATTAAT
* * * *
32313334 CAGGAAGCTTATACGAGCCAAT-AT
1 CGGGAAGCTCATAAGAGCCATTAAT
**
32313358 CGGGAAGCTTC-GGAGAGCCATTAA-
1 CGGGAAGC-TCATAAGAGCCATTAAT
* * * *
32313382 CGGGAAGCTCATGACAGTCATTTAT
1 CGGGAAGCTCATAAGAGCCATTAAT
32313407 CGGGAAGCTCCA-AAGAGCCATTAAT
1 CGGGAAGCT-CATAAGAGCCATTAAT
*
32313432 CGGGATGCTCATAAGAG
1 CGGGAAGCTCATAAGAG
32313449 TTACGGTGTG
Statistics
Matches: 106, Mismatches: 25, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
23 4 0.04
24 49 0.46
25 51 0.48
26 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (25 bp):
CGGGAAGCTCATAAGAGCCATTAAT
Found at i:32313522 original size:24 final size:25
Alignment explanation
Indices: 32313488--32313547 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
32313478 CACAACCAAT
* *
32313488 CAGGATGCTCATAAGAGCTAT-TAA
1 CAGGAAGCTCATAAGAGCCATCTAA
* * *
32313512 CGGGAAGCTCATGAGAGCCATCTAT
1 CAGGAAGCTCATAAGAGCCATCTAA
32313537 CAGGAAGCTCA
1 CAGGAAGCTCA
32313548 AGAGATCCAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 17 0.59
25 12 0.41
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (25 bp):
CAGGAAGCTCATAAGAGCCATCTAA
Found at i:32315192 original size:25 final size:26
Alignment explanation
Indices: 32315163--32315280 Score: 131
Period size: 25 Copynumber: 4.7 Consensus size: 26
32315153 TCCTGTACAT
*
32315163 GTATGGTCAT-ACGAGCTGTAAATCG
1 GTATGCTCATCACGAGCTGTAAATCG
*
32315188 GTATGCTCA-CTA-GAGCTGTAGATCG
1 GTATGCTCATC-ACGAGCTGTAAATCG
*
32315213 GTATGCTC-TCACGAGCTATAAATCG
1 GTATGCTCATCACGAGCTGTAAATCG
* *
32315238 GTATGC-CCTCACGAGCTGTAGATCG
1 GTATGCTCATCACGAGCTGTAAATCG
*
32315263 GTATGCTC-TCATGAGCTG
1 GTATGCTCATCACGAGCTG
32315281 CAGGTCGAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
24 2 0.03
25 76 0.95
26 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (26 bp):
GTATGCTCATCACGAGCTGTAAATCG
Found at i:32315228 original size:50 final size:50
Alignment explanation
Indices: 32315173--32315280 Score: 166
Period size: 50 Copynumber: 2.2 Consensus size: 50
32315163 GTATGGTCAT
32315173 ACGAGCTGTAAATCGGTATG--CTCACTAGAGCTGTAGATCGGTATGCTCTC
1 ACGAGCTGTAAATCGGTATGCCCTCAC--GAGCTGTAGATCGGTATGCTCTC
*
32315223 ACGAGCTATAAATCGGTATGCCCTCACGAGCTGTAGATCGGTATGCTCTC
1 ACGAGCTGTAAATCGGTATGCCCTCACGAGCTGTAGATCGGTATGCTCTC
*
32315273 ATGAGCTG
1 ACGAGCTG
32315281 CAGGTCGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
50 48 0.91
52 5 0.09
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (50 bp):
ACGAGCTGTAAATCGGTATGCCCTCACGAGCTGTAGATCGGTATGCTCTC
Found at i:32318737 original size:19 final size:19
Alignment explanation
Indices: 32318713--32318753 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
32318703 CTGCTAGTAG
32318713 ATTTTTACAATTAATTCAC
1 ATTTTTACAATTAATTCAC
32318732 ATTTTTACAATTAATTCAC
1 ATTTTTACAATTAATTCAC
32318751 ATT
1 ATT
32318754 GATCTTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTTTACAATTAATTCAC
Done.