Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 106 of 221
Found at i:32605129 original size:18 final size:17
Alignment explanation
Indices: 32605102--32605135 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32605092 TTATTAAGAG
*
32605102 TTTTATTAAATTATATA
1 TTTTATTAAAATATATA
32605119 TTTTAATTAAAATATAT
1 TTTT-ATTAAAATATAT
32605136 TTAATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTATTAAAATATATA
Found at i:32605243 original size:147 final size:148
Alignment explanation
Indices: 32605089--32605362 Score: 489
Period size: 147 Copynumber: 1.9 Consensus size: 148
32605079 ATAAGAATAT
* *
32605089 TAATTATTAAGAGTTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
32605154 AAATATGAGTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGAGTAAATTATTTATT-TTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
32605217 TACCAAAACAAATTTCTGC
130 TACCAAAACAAATTTCTGC
32605236 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
32605301 AAATATGATTAAATTATTTATTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGAGTAAATTATTTATTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
32605363 CAATAATCAT
Statistics
Matches: 121, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
146 5 0.04
147 111 0.92
148 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (148 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGAGTAAATTATTTATTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATTT
ACCAAAACAAATTTCTGC
Found at i:32605276 original size:18 final size:17
Alignment explanation
Indices: 32605248--32605282 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
32605238 ATTATTAAGA
*
32605248 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
32605265 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
32605283 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:32605533 original size:45 final size:44
Alignment explanation
Indices: 32605443--32605537 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 44
32605433 TTACACCTCT
* * *
32605443 ATTACATTCAACCAAACACAGTTTTACTATTACGCCTATATTCC
1 ATTACATTCAACCAAACACAGATTTACTATTACACATATATTCC
** * *
32605487 ATTACATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCC
1 ATTACATTCAACCAAACA-CAGATTTACTATTACACATATATTCC
32605532 ATTACA
1 ATTACA
32605538 CCTCTAATCC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 18 0.42
45 25 0.58
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGATTTACTATTACACATATATTCC
Found at i:32605537 original size:16 final size:16
Alignment explanation
Indices: 32605518--32605569 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
32605508 GATTTGCTAT
* * *
32605518 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
32605534 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32605550 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32605566 TACA
1 TACA
32605570 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:32606161 original size:23 final size:22
Alignment explanation
Indices: 32606114--32606161 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
32606104 GATTTTTAAA
* *
32606114 ATTTAAATTATTTAGTGGTAGT
1 ATTTAAATTATTTAGTGATAAT
*
32606136 ATTTAAGATTTTTTAGTGATAAT
1 ATTTAA-ATTATTTAGTGATAAT
32606159 ATT
1 ATT
32606162 AAGGAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (22 bp):
ATTTAAATTATTTAGTGATAAT
Found at i:32613940 original size:37 final size:38
Alignment explanation
Indices: 32613881--32613953 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
32613871 AGTTAAGTTC
** * *
32613881 CATTCAGTATAATTTTATGATTTG-CTCGATTGAGCTT
1 CATTCAGTATAATAGTAAGATTTGACTCGATAGAGCTT
32613918 CATTCAGTATAATAGTAAGATTTGACTCGATAGAGC
1 CATTCAGTATAATAGTAAGATTTGACTCGATAGAGC
32613954 GTACTTCCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 21 0.68
38 10 0.32
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (38 bp):
CATTCAGTATAATAGTAAGATTTGACTCGATAGAGCTT
Found at i:32615798 original size:15 final size:15
Alignment explanation
Indices: 32615778--32615806 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32615768 TCATCGGACT
32615778 TACGCATCTAATACA
1 TACGCATCTAATACA
32615793 TACGCATCTAATAC
1 TACGCATCTAATAC
32615807 TTTACGGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.28
Consensus pattern (15 bp):
TACGCATCTAATACA
Found at i:32617080 original size:46 final size:46
Alignment explanation
Indices: 32617027--32617116 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
32617017 ACTCTATTTT
32617027 GATTCTTTTGAAAGTAATAGGAGTAATTTGAATACTTTAAAATAAA
1 GATTCTTTTGAAAGTAATAGGAGTAATTTGAATACTTTAAAATAAA
*
32617073 GATTCTTTTGAAAGTTATAGGAGTAATTTGAATACTTTAAAATA
1 GATTCTTTTGAAAGTAATAGGAGTAATTTGAATACTTTAAAATA
32617117 TTTTAGTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.41, C:0.04, G:0.16, T:0.39
Consensus pattern (46 bp):
GATTCTTTTGAAAGTAATAGGAGTAATTTGAATACTTTAAAATAAA
Found at i:32617666 original size:44 final size:44
Alignment explanation
Indices: 32617603--32617691 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
32617593 TTGAGGGGAG
32617603 TGTGTTGATGCTACAACTAAGGGGGAGTGTGCTAATGGTATTAT
1 TGTGTTGATGCTACAACTAAGGGGGAGTGTGCTAATGGTATTAT
32617647 TGTGTTGATGCTACAACTAAGGGGGAGTGTGCTAATGGTATTAT
1 TGTGTTGATGCTACAACTAAGGGGGAGTGTGCTAATGGTATTAT
32617691 T
1 T
32617692 AAGGGGGAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.25, C:0.09, G:0.31, T:0.35
Consensus pattern (44 bp):
TGTGTTGATGCTACAACTAAGGGGGAGTGTGCTAATGGTATTAT
Found at i:32643233 original size:27 final size:27
Alignment explanation
Indices: 32643203--32643320 Score: 105
Period size: 27 Copynumber: 4.4 Consensus size: 27
32643193 TCTTTCAAAC
*
32643203 AGGTGATTGGCAGACTGTCTCGCTAAT
1 AGGTGACTGGCAGACTGTCTCGCTAAT
* *
32643230 AGGTGACTGGC-GAATTGTCTCGCTAAC
1 AGGTGACTGGCAG-ACTGTCTCGCTAAT
** * *
32643257 AGGTGACTGGCAGTTTGTCTCACTAAA
1 AGGTGACTGGCAGACTGTCTCGCTAAT
* * * *
32643284 AGATGACTGGCGGACTATCTCGCGAAT
1 AGGTGACTGGCAGACTGTCTCGCTAAT
32643311 AAGG-GACTGG
1 -AGGTGACTGG
32643321 TGGGTTGTCT
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 69 0.95
28 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (27 bp):
AGGTGACTGGCAGACTGTCTCGCTAAT
Found at i:32643305 original size:54 final size:54
Alignment explanation
Indices: 32643181--32643306 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
32643171 TGGACAGGTA
* ** * * * *
32643181 ACTGGTGGACTATCTTTCAAACAGGTGATTGGCAGACTGTCTCGCTAATAGGTG
1 ACTGGCGGACTATCTCGCAAACAGGTGACTGGCAGACTGTCTCACTAAAAGATG
* * * * **
32643235 ACTGGCGAATTGTCTCGCTAACAGGTGACTGGCAGTTTGTCTCACTAAAAGATG
1 ACTGGCGGACTATCTCGCAAACAGGTGACTGGCAGACTGTCTCACTAAAAGATG
32643289 ACTGGCGGACTATCTCGC
1 ACTGGCGGACTATCTCGC
32643307 GAATAAGGGA
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (54 bp):
ACTGGCGGACTATCTCGCAAACAGGTGACTGGCAGACTGTCTCACTAAAAGATG
Found at i:32644093 original size:44 final size:44
Alignment explanation
Indices: 32644030--32644117 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
32644020 ATTCCAGAAA
32644030 CTAATAAAGAGCTCCTCACTTGTGTTTAGTCAAGTAAATCCATG
1 CTAATAAAGAGCTCCTCACTTGTGTTTAGTCAAGTAAATCCATG
32644074 CTAATAAAGAGCTCCTCACTTGTGTTTAGTCAAGTAAATCCATG
1 CTAATAAAGAGCTCCTCACTTGTGTTTAGTCAAGTAAATCCATG
32644118 TATATCGATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (44 bp):
CTAATAAAGAGCTCCTCACTTGTGTTTAGTCAAGTAAATCCATG
Found at i:32654229 original size:51 final size:50
Alignment explanation
Indices: 32654173--32654294 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 50
32654163 TTTTATGATT
*
32654173 ATTATGAAATATGATTATTTAATTAAATAATAAAAAATTAAATATTTAAAA
1 ATTATGAAATATGATTATTTAATT-AATAATAAAAAATTAAATAATTAAAA
* * **
32654224 ATTATG-AATAT--TTATTT-ATT--TAATCAAAAATTAATTAATTAATT
1 ATTATGAAATATGATTATTTAATTAATAATAAAAAATTAAATAATTAAAA
* *
32654268 ATTATGAAACATGATTATTTATTTAAT
1 ATTATGAAATATGATTATTTAATTAAT
32654295 TTTATCCACC
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
44 25 0.43
45 4 0.07
47 9 0.16
48 8 0.14
50 6 0.10
51 6 0.10
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (50 bp):
ATTATGAAATATGATTATTTAATTAATAATAAAAAATTAAATAATTAAAA
Found at i:32654233 original size:17 final size:15
Alignment explanation
Indices: 32654193--32654237 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
32654183 ATGATTATTT
* *
32654193 AATTAAATAATAAAA
1 AATTAAATATTTAAA
32654208 AATTAAATATTTAAA
1 AATTAAATATTTAAA
32654223 AATTATGAATATTTA
1 AATTA--AATATTTA
32654238 TTTATTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 18 0.69
17 8 0.31
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (15 bp):
AATTAAATATTTAAA
Found at i:32654342 original size:12 final size:12
Alignment explanation
Indices: 32654321--32654358 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
32654311 TCCCTTTCGA
*
32654321 TTTTAGTACTAG
1 TTTTAATACTAG
32654333 TTTTAATACTAG
1 TTTTAATACTAG
*
32654345 -TTTAAAACTAG
1 TTTTAATACTAG
32654356 TTT
1 TTT
32654359 AGTAAATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.50
Consensus pattern (12 bp):
TTTTAATACTAG
Found at i:32660771 original size:39 final size:39
Alignment explanation
Indices: 32660725--32660810 Score: 163
Period size: 39 Copynumber: 2.2 Consensus size: 39
32660715 ACATAGTATA
32660725 CTTCTCTTGTAATCATTCGAATTCGACATAGTGAAGTTT
1 CTTCTCTTGTAATCATTCGAATTCGACATAGTGAAGTTT
*
32660764 CTTCTCTTGTAATCATTTGAATTCGACATAGTGAAGTTT
1 CTTCTCTTGTAATCATTCGAATTCGACATAGTGAAGTTT
32660803 CTTCTCTT
1 CTTCTCTT
32660811 CTGCCCATGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (39 bp):
CTTCTCTTGTAATCATTCGAATTCGACATAGTGAAGTTT
Found at i:32661830 original size:21 final size:21
Alignment explanation
Indices: 32661806--32661847 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32661796 ATTAACAAAC
32661806 AAACAAAAT-GATTTGGGGAAA
1 AAAC-AAATGGATTTGGGGAAA
*
32661827 AAACTAATGGATTTGGGGAAA
1 AAACAAATGGATTTGGGGAAA
32661848 TTGCAGCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.48, C:0.05, G:0.26, T:0.21
Consensus pattern (21 bp):
AAACAAATGGATTTGGGGAAA
Found at i:32662040 original size:41 final size:40
Alignment explanation
Indices: 32661971--32662111 Score: 124
Period size: 41 Copynumber: 3.5 Consensus size: 40
32661961 AAAATATTCA
* ** *
32661971 CAGCGTTTATGGGGAAAATGCAACTATTGTTTTACCTATAG
1 CAGCGTTTATGGGAAAAATGC-GTTATTGTTTTACCTTTAG
*
32662012 CAGCGTTTATGGGAAAAATGTCGTTATTGTTTTAACCTTTTG
1 CAGCGTTTATGGGAAAAATG-CGTTATTGTTTT-ACCTTTAG
* * *
32662054 C-GACGTTTAT-GCAAAAACGCCGTTATTGCTTTACCTTTAG
1 CAG-CGTTTATGGGAAAAATG-CGTTATTGTTTTACCTTTAG
** *
32662094 TGGCGTTTATGAGAAAAA
1 CAGCGTTTATGGGAAAAA
32662112 CACCACTATC
Statistics
Matches: 82, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
40 14 0.17
41 53 0.65
42 15 0.18
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (40 bp):
CAGCGTTTATGGGAAAAATGCGTTATTGTTTTACCTTTAG
Found at i:32662100 original size:82 final size:82
Alignment explanation
Indices: 32661993--32662194 Score: 251
Period size: 82 Copynumber: 2.5 Consensus size: 82
32661983 GGAAAATGCA
* * * *** ** **
32661993 ACTATTGTTTTACCTATAGCAGCGTTTATGGGAAAAATGTCGTTATTGTTTTAACCTTTTGCGAC
1 ACTATTGCTTTACCTTTAGCGGCGTTTATGGGAAAAACACCACTATCATTTTAACCTTTTGCGAC
32662058 GTTTATGCAAAAACGCC
66 GTTTATGCAAAAACGCC
** * * *
32662075 GTTATTGCTTTACCTTTAGTGGCGTTTATGAGAAAAACACCACTATCATTTTAACCTTTTGCGGC
1 ACTATTGCTTTACCTTTAGCGGCGTTTATGGGAAAAACACCACTATCATTTTAACCTTTTGCGAC
*
32662140 GTTTATGCAAAAACTCC
66 GTTTATGCAAAAACGCC
*
32662157 ACTATTGCTTTACCTTTTGCGGCGTTTATGGGAAAAAC
1 ACTATTGCTTTACCTTTAGCGGCGTTTATGGGAAAAAC
32662195 GCCGCTTACG
Statistics
Matches: 99, Mismatches: 21, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
82 99 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (82 bp):
ACTATTGCTTTACCTTTAGCGGCGTTTATGGGAAAAACACCACTATCATTTTAACCTTTTGCGAC
GTTTATGCAAAAACGCC
Found at i:32662112 original size:41 final size:40
Alignment explanation
Indices: 32661994--32662200 Score: 189
Period size: 41 Copynumber: 5.0 Consensus size: 40
32661984 GAAAATGCAA
* * * * *
32661994 CTATTGTTTTACCTATAGCAGCGTTTATGGGAAAAATGTCG
1 CTATTGTTTTACCTTTTGCGGCGTTTAT-GGAAAAACGCCG
* * *
32662035 TTATTGTTTTAACCTTTTGCGACGTTTATGCAAAAACGCCG
1 CTATTGTTTT-ACCTTTTGCGGCGTTTATGGAAAAACGCCG
* * * * * *
32662076 TTATTGCTTTACCTTTAGTGGCGTTTATGAGAAAAACACCA
1 CTATTGTTTTACCTTTTGCGGCGTTTATG-GAAAAACGCCG
** * * *
32662117 CTATCATTTTAACCTTTTGCGGCGTTTATGCAAAAACTCCA
1 CTATTGTTTT-ACCTTTTGCGGCGTTTATGGAAAAACGCCG
*
32662158 CTATTGCTTTACCTTTTGCGGCGTTTATGGGAAAAACGCCG
1 CTATTGTTTTACCTTTTGCGGCGTTTAT-GGAAAAACGCCG
32662199 CT
1 CT
32662201 TACGCTGCTA
Statistics
Matches: 133, Mismatches: 29, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
40 34 0.26
41 68 0.51
42 31 0.23
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (40 bp):
CTATTGTTTTACCTTTTGCGGCGTTTATGGAAAAACGCCG
Found at i:32674007 original size:33 final size:32
Alignment explanation
Indices: 32673948--32674022 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 32
32673938 TTTAAATAAA
* * *
32673948 TTTT-AAAT-TTTCTTTTTAGTTTATTTTTAT
1 TTTTAAAATATTTCTCTTTAATTAATTTTTAT
*
32673978 TTATTAAATTATTTCTCTTTAATTAATTTTTAT
1 TT-TTAAAATATTTCTCTTTAATTAATTTTTAT
32674011 TTTTAAAATATT
1 TTTTAAAATATT
32674023 ATTGTTCATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 2 0.05
31 2 0.05
32 12 0.32
33 21 0.57
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.67
Consensus pattern (32 bp):
TTTTAAAATATTTCTCTTTAATTAATTTTTAT
Found at i:32690713 original size:157 final size:157
Alignment explanation
Indices: 32690525--32690942 Score: 571
Period size: 157 Copynumber: 2.7 Consensus size: 157
32690515 AAAAAAAAAA
*
32690525 TTAGTCATTTTAAAGGAAATTTTACATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTC
1 TTAGTCATTTTAAAGGAAATTTTAAATTTTTAAAATAAAGTTTTGA-TTTTTTTTCAACTATTTC
*
32690590 GAAATAAAAGCTTTGATCTTTAAGAAAAATAGTGATTTTTAAAA-AAAAAAAGAAAGAGAAAGTT
65 GAAATAAAAGCTTTGATATTTAAGAAAAATAGTGATTTTTAAAAGAAAAAAA-AAAGAGAAAGTT
*
32690654 TAGA-TTTTAAAAATTAATAATCTG-TTTC
129 TAGATTTTTAAAAA-TAAAAATCTGTTTTC
* * * * *
32690682 TTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAA-TTTTTATTTTTTTCCAACTATTTCG
1 TTAGTCATTTTAAAGGAAATTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTTCG
* * *
32690746 AAATAAAAGCTTTGATATTTGAGAAAAGTAGTGGTTTTTTAAAAGAAAAAAAAAAGAGAAAGTTT
66 AAATAAAAGCTTTGATATTTAAGAAAAATAGT-GATTTTTAAAAGAAAAAAAAAAGAGAAAGTTT
* *
32690811 GGATTTTTAAAAATAAAAATCTGTTTTTT
130 AGATTTTTAAAAATAAAAATCTG-TTTTC
* *
32690840 TTAGTCATTTTAAATGAAAATTTTAAATTTTTAAAATAAAGTTTTGATCTTTTTT-AACTATTTC
1 TTAGTCATTTTAAA-GGAAATTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTTC
* *
32690904 GAAATAAAA-CTTTAATTTTTAAGAAAAATTA-TGATTTTT
65 GAAATAAAAGCTTTGATATTTAAGAAAAA-TAGTGATTTTT
32690943 TTTAAGAAAA
Statistics
Matches: 228, Mismatches: 25, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
155 47 0.21
156 39 0.17
157 57 0.25
158 33 0.14
159 41 0.18
160 11 0.05
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (157 bp):
TTAGTCATTTTAAAGGAAATTTTAAATTTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTTCG
AAATAAAAGCTTTGATATTTAAGAAAAATAGTGATTTTTAAAAGAAAAAAAAAAGAGAAAGTTTA
GATTTTTAAAAATAAAAATCTGTTTTC
Found at i:32690944 original size:22 final size:21
Alignment explanation
Indices: 32690919--32690962 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
32690909 AAAACTTTAA
32690919 TTTTTAAGAAAAATTATGATTT
1 TTTTTAAGAAAAATT-TGATTT
*
32690941 TTTTTAAGAAAACTTTGATTT
1 TTTTTAAGAAAAATTTGATTT
32690962 T
1 T
32690963 GCAAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.52
Consensus pattern (21 bp):
TTTTTAAGAAAAATTTGATTT
Found at i:32690952 original size:21 final size:22
Alignment explanation
Indices: 32690919--32690962 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
32690909 AAAACTTTAA
32690919 TTTTTAAGAAAAA-TTATGATTT
1 TTTTTAAGAAAAACTT-TGATTT
32690941 TTTTTAAG-AAAACTTTGATTT
1 TTTTTAAGAAAAACTTTGATTT
32690962 T
1 T
32690963 GCAAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.52
Consensus pattern (22 bp):
TTTTTAAGAAAAACTTTGATTT
Found at i:32694076 original size:15 final size:16
Alignment explanation
Indices: 32694056--32694088 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
32694046 AATACATAAA
32694056 TTTTC-TCTCTTTTTT
1 TTTTCTTCTCTTTTTT
32694071 TTTTCTTCTCTTTTTT
1 TTTTCTTCTCTTTTTT
32694087 TT
1 TT
32694089 CATCTACTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTCTTCTCTTTTTT
Found at i:32694084 original size:14 final size:15
Alignment explanation
Indices: 32694056--32694101 Score: 58
Period size: 14 Copynumber: 3.0 Consensus size: 15
32694046 AATACATAAA
*
32694056 TTTTCTCTCTTTTTT
1 TTTTCTCTCTCTTTT
32694071 TTTTCT-TCTCTTTT
1 TTTTCTCTCTCTTTT
32694085 TTTTCATCTACTCTTTT
1 TTTTC-TCT-CTCTTTT
32694102 CTTCTTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 12 0.44
15 7 0.26
16 1 0.04
17 7 0.26
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCTCTCTCTTTT
Found at i:32694098 original size:17 final size:16
Alignment explanation
Indices: 32694062--32694101 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
32694052 TAAATTTTCT
* *
32694062 CTCTTTTTTTTTTCTT
1 CTCTTTTTTTTATCTA
32694078 CTCTTTTTTTTCATCTA
1 CTCTTTTTTTT-ATCTA
32694095 CTCTTTT
1 CTCTTTT
32694102 CTTCTTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (16 bp):
CTCTTTTTTTTATCTA
Found at i:32698699 original size:15 final size:16
Alignment explanation
Indices: 32698672--32698704 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
32698662 ACTTGTGTGA
32698672 TTAATATATGTTTTAG
1 TTAATATATGTTTTAG
32698688 TTAATA-ATGTTTTAG
1 TTAATATATGTTTTAG
32698703 TT
1 TT
32698705 CATGGTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (16 bp):
TTAATATATGTTTTAG
Found at i:32718369 original size:32 final size:32
Alignment explanation
Indices: 32718328--32718395 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
32718318 AAATAATAAG
32718328 ACCAGAAAACCTTTCTCTTATCATCATTTACA
1 ACCAGAAAACCTTTCTCTTATCATCATTTACA
*
32718360 ACCAGAAAACCTTTCTCTTATTATCATTTACA
1 ACCAGAAAACCTTTCTCTTATCATCATTTACA
32718392 ACCA
1 ACCA
32718396 AGTATAGCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.35, C:0.28, G:0.03, T:0.34
Consensus pattern (32 bp):
ACCAGAAAACCTTTCTCTTATCATCATTTACA
Found at i:32724723 original size:8 final size:8
Alignment explanation
Indices: 32724701--32724730 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
32724691 TACTTCAATT
32724701 TTATTTTA
1 TTATTTTA
32724709 TTTATTTTA
1 -TTATTTTA
32724718 TTATTTTA
1 TTATTTTA
32724726 TTATT
1 TTATT
32724731 CTATAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATTTTA
Found at i:32725925 original size:22 final size:22
Alignment explanation
Indices: 32725899--32725941 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
32725889 GATAGAATGC
32725899 ATAAAGAAGAAAAGATAAGAAA
1 ATAAAGAAGAAAAGATAAGAAA
*
32725921 ATAAAGGAGAAAAGATAAGAA
1 ATAAAGAAGAAAAGATAAGAA
32725942 CTTACATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.21, T:0.09
Consensus pattern (22 bp):
ATAAAGAAGAAAAGATAAGAAA
Found at i:32728620 original size:10 final size:10
Alignment explanation
Indices: 32728605--32728659 Score: 55
Period size: 10 Copynumber: 5.8 Consensus size: 10
32728595 TCTACAAGTT
32728605 ATTTTTAATA
1 ATTTTTAATA
32728615 ATTTTTAATA
1 ATTTTTAATA
32728625 A-TTTTAATA
1 ATTTTTAATA
*
32728634 A-GTTT-ATA
1 ATTTTTAATA
*
32728642 ATTTCTT-ATC
1 ATTT-TTAATA
32728652 ATTTTTAA
1 ATTTTTAA
32728660 ATTTTTTTAG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
8 4 0.10
9 15 0.38
10 20 0.51
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:32728629 original size:9 final size:9
Alignment explanation
Indices: 32728607--32728645 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
32728597 TACAAGTTAT
32728607 TTTTAATAA
1 TTTTAATAA
32728616 TTTTTAATAA
1 -TTTTAATAA
32728626 TTTTAATAA
1 TTTTAATAA
*
32728635 GTTT-ATAA
1 TTTTAATAA
32728643 TTT
1 TTT
32728646 CTTATCATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
8 6 0.22
9 12 0.44
10 9 0.33
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTTAATAA
Found at i:32728818 original size:10 final size:9
Alignment explanation
Indices: 32728789--32728819 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32728779 ATATTTATTA
*
32728789 TTTAAGATT
1 TTTAAAATT
32728798 TTTAAAATT
1 TTTAAAATT
32728807 TTTAAAATT
1 TTTAAAATT
32728816 TTTA
1 TTTA
32728820 CGCTAAACTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (9 bp):
TTTAAAATT
Found at i:32736482 original size:40 final size:40
Alignment explanation
Indices: 32736426--32736595 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
32736416 GGACTAAGAT
* * *
32736426 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
32736466 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
32736506 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
32736546 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
*
32736585 CCGAAAGCATT
1 CCGAAGGCATT
32736596 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 31 0.28
40 80 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:32736615 original size:79 final size:80
Alignment explanation
Indices: 32736448--32736630 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
32736438 GTGCGAGATA
* * * * *
32736448 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAAG
** **
32736513 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
32736528 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAAG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAAG
*
32736592 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
32736607 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
32736631 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 24 0.29
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAAG
CATTCGAACGAGGAG
Found at i:32744398 original size:40 final size:40
Alignment explanation
Indices: 32744342--32744511 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
32744332 GGACTAAGAT
* * *
32744342 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
32744382 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
32744422 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
32744462 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
*
32744501 CCGAAAGCATT
1 CCGAAGGCATT
32744512 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 31 0.28
40 80 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:32744531 original size:79 final size:80
Alignment explanation
Indices: 32744364--32744546 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
32744354 GTGCGAGATA
* * * * *
32744364 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAAG
** **
32744429 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
32744444 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAAG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAAG
*
32744508 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
32744523 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
32744547 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 24 0.29
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAAG
CATTCGAACGAGGAG
Found at i:32747093 original size:44 final size:44
Alignment explanation
Indices: 32747034--32747538 Score: 159
Period size: 44 Copynumber: 10.8 Consensus size: 44
32747024 CCTTTATTTT
*
32747034 AATCCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCCGCTCCACTATAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
32747078 AATCTGCTCCGCTATAATCTTAGGGAGATAAGATTTCTGGCTTC
1 AATCCGCTCCACTATAATCTCAGGGAGATAAGATTACTAGCTTC
* * ** * * *
32747122 AATATGATGCGATCTACTCTACTGTAA-CTTCAAAGAGATAAGATCCT-TTA-TTTT
1 ---A--ATCCG--CT-C-C-ACTATAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * *
32747176 AATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTC
1 AATCCGCTCCACTATAATCTCAGGGAGATAAGATTACTAGCTTC
** * **
32747220 AATTTGCTCCACTGTAATCTCAGGGAGATAAGATTTTTAGCTTC
1 AATCCGCTCCACTATAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
32747264 AATCTAATGCGATCTACTCTACTGTAA-CTTCAGAGAGAT--GA-TACCCTTTA-TTTT
1 AATC-----CG--CT-C-C-ACTATAATC-TCAGGGAGATAAGATTA--C--TAGCTTC
* * *
32747318 AATCCGCTCCACTATAATATCAGGAAGATAGGATTACTAGCTTC
1 AATCCGCTCCACTATAATCTCAGGGAGATAAGATTACTAGCTTC
* ** * * * *
32747362 AATCTGCTCCGGTGTAATCTCTGGGAGATAAGATTTCTGGCTTC
1 AATCCGCTCCACTATAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
32747406 AATCTGATGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-CTTT
1 AATC-----CG--CT-C-C-ACTATAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * *
32747460 AATGCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCCGCTCCACTATAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
32747504 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
1 AATCCGCTCCACTATAATCTCAGGGAGATAAGATT
32747539 TCTTCTTCAG
Statistics
Matches: 338, Mismatches: 71, Indels: 104
0.66 0.14 0.20
Matches are distributed among these distances:
42 2 0.01
43 6 0.02
44 208 0.62
45 5 0.01
46 5 0.01
47 9 0.03
49 13 0.04
51 8 0.02
52 5 0.01
53 6 0.02
54 65 0.19
55 4 0.01
56 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
AATCCGCTCCACTATAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:32747245 original size:142 final size:142
Alignment explanation
Indices: 32746983--32747541 Score: 929
Period size: 142 Copynumber: 3.9 Consensus size: 142
32746973 GAGATACGAC
32746983 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTA
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTA
* * *
32747048 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTTAGGGAGATAAGATT
66 TAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
32747113 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
32747125 ATGATGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTA
* *
32747190 TAATATCAGGGAGATAGGATTACTAGCTTCAATTTGCTCCACTGTAATCTCAGGGAGATAAGATT
66 TAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
* *
32747255 TTTAGCTTCAAT
131 TCTGGCTTCAAT
* * * *
32747267 CTAATGCGATCTACTCTACTGTAACTTCAGAGAGATGATACCCTTTATTTTAATCCGCTCCACTA
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTA
* * *
32747332 TAATATCAGGAAGATAGGATTACTAGCTTCAATCTGCTCCGGTGTAATCTCTGGGAGATAAGATT
66 TAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
32747397 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
32747409 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTACTTTAATGCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTA
*
32747474 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
32747539 TCT
131 TCT
32747542 TCTTCAGTCT
Statistics
Matches: 382, Mismatches: 35, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 382 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (142 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTA
TAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTGGCTTCAAT
Found at i:32747563 original size:43 final size:43
Alignment explanation
Indices: 32747468--32747597 Score: 122
Period size: 44 Copynumber: 3.0 Consensus size: 43
32747458 TTAATGCGCT
* * * * *
32747468 CCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
1 CCACTGTAATCTCAGGGAGATAAGATTTCT-TCTTCAGTCTGCC
*
32747512 CCGCTGTAATCTCAGGGAGATAAGATTTCTTCTTCAGTCTGCC
1 CCACTGTAATCTCAGGGAGATAAGATTTCTTCTTCAGTCTGCC
* *
32747555 CCATTGTAA-CTTCAGGG-GAATAAGACTTGTTTTCTT-AGTCTGC
1 CCACTGTAATC-TCAGGGAG-ATAAGA-TT-TCTTCTTCAGTCTGC
32747598 TCTGCCACTG
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
42 2 0.03
43 29 0.40
44 36 0.49
45 6 0.08
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (43 bp):
CCACTGTAATCTCAGGGAGATAAGATTTCTTCTTCAGTCTGCC
Found at i:32747765 original size:131 final size:131
Alignment explanation
Indices: 32747593--32748065 Score: 741
Period size: 131 Copynumber: 3.6 Consensus size: 131
32747583 GTTTTCTTAG
* * * * * * *
32747593 TCTGCTCTGCCACTGCTTAGGGAAACAAGATCTGCAATTTCCAACCTATTCTACTGCTGATCAGG
1 TCTGCTCCGCTACTGCTTAGAGAGACAAGACCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
*
32747658 GACATAGGACGTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTCCG
66 GACATAGGACGTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCG
32747723 A
131 A
* *
32747724 TCTGCTCCGCTACTGCTTAGAGAGACAAGACCTACAATTTCCAACCTAGTCCACTGCTGGTCAGG
1 TCTGCTCCGCTACTGCTTAGAGAGACAAGACCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
* * *
32747789 GACATAGGACGTGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAAGATAAGATTCGCCGTTTTCG
66 GACATAGGACGTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCG
32747854 A
131 A
* * *
32747855 TTTGCTCCGCTACTGCTTAGGGAGACAAGACCTGTAATTTCCAACCTATTCCACTGCTGGTCAGG
1 TCTGCTCCGCTACTGCTTAGAGAGACAAGACCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
* *
32747920 GACATAGGACGTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTTGTCGTCTTCG
66 GACATAGGACGTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCG
32747985 A
131 A
* *
32747986 TCTGCTCCGCTACTGCTTA-AGGAGACAAGATCTGCAATTTCCAACCTATTCCATTGCTGGTCAG
1 TCTGCTCCGCTACTGCTTAGA-GAGACAAGACCTGCAATTTCCAACCTATTCCACTGCTGGTCAG
*
32748050 GGACATAGGACTTGTG
65 GGACATAGGACGTGTG
32748066 ATTTCATTGA
Statistics
Matches: 312, Mismatches: 29, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
131 312 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (131 bp):
TCTGCTCCGCTACTGCTTAGAGAGACAAGACCTGCAATTTCCAACCTATTCCACTGCTGGTCAGG
GACATAGGACGTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGTCTTCG
A
Found at i:32749328 original size:7 final size:7
Alignment explanation
Indices: 32749311--32749360 Score: 55
Period size: 8 Copynumber: 6.7 Consensus size: 7
32749301 GGCCTCTCCA
32749311 TTTTTACT
1 TTTTTA-T
32749319 TTTTTAT
1 TTTTTAT
*
32749326 TTTTCAT
1 TTTTTAT
32749333 TTTTTCAT
1 TTTTT-AT
32749341 TTTTTCAT
1 TTTTT-AT
*
32749349 TTTTCAT
1 TTTTTAT
32749356 TTTTT
1 TTTTT
32749361 TTACTCAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
7 17 0.46
8 20 0.54
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTAT
Found at i:32749360 original size:15 final size:15
Alignment explanation
Indices: 32749309--32749359 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 15
32749299 TTGGCCTCTC
32749309 CATTTTT-ACTTTTTT
1 CATTTTTCA-TTTTTT
32749324 -ATTTTTCATTTTTT
1 CATTTTTCATTTTTT
32749338 CATTTTTTCA-TTTTT
1 CA-TTTTTCATTTTTT
32749353 CATTTTT
1 CATTTTT
32749360 TTTACTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
14 17 0.52
15 9 0.27
16 7 0.21
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.75
Consensus pattern (15 bp):
CATTTTTCATTTTTT
Found at i:32749361 original size:16 final size:16
Alignment explanation
Indices: 32749309--32749360 Score: 67
Period size: 15 Copynumber: 3.5 Consensus size: 16
32749299 TTGGCCTCTC
*
32749309 CATTTTTAC-TTTTTT
1 CATTTTTTCATTTTTT
32749324 -A-TTTTTCATTTTTT
1 CATTTTTTCATTTTTT
32749338 CATTTTTTCA-TTTTT
1 CATTTTTTCATTTTTT
32749353 CATTTTTT
1 CATTTTTT
32749361 TTACTCAAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.15
14 7 0.21
15 14 0.42
16 7 0.21
ACGTcount: A:0.13, C:0.12, G:0.00, T:0.75
Consensus pattern (16 bp):
CATTTTTTCATTTTTT
Found at i:32750281 original size:22 final size:22
Alignment explanation
Indices: 32750229--32750300 Score: 92
Period size: 22 Copynumber: 3.2 Consensus size: 22
32750219 CTTCTCTCTT
* * *
32750229 TTTTCATTTTCATTTTGACTTTG
1 TTTTGATTTTGATTTT-TCTTTG
32750252 ATTTTGATTTTGATTTTTCTTTG
1 -TTTTGATTTTGATTTTTCTTTG
32750275 TTTTGATTTTGATTTTT-TTTG
1 TTTTGATTTTGATTTTTCTTTG
32750296 TTTTG
1 TTTTG
32750301 CTTCCTTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 9 0.20
22 17 0.38
23 5 0.11
24 14 0.31
ACGTcount: A:0.11, C:0.06, G:0.12, T:0.71
Consensus pattern (22 bp):
TTTTGATTTTGATTTTTCTTTG
Found at i:32750299 original size:6 final size:6
Alignment explanation
Indices: 32750229--32750290 Score: 67
Period size: 6 Copynumber: 10.7 Consensus size: 6
32750219 CTTCTCTCTT
* * *
32750229 TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTTGA TTTT-- TCTTTG-
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA T-TTTGA
32750275 TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTT
32750291 TTTTGTTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
4 1 0.02
5 7 0.14
6 42 0.84
ACGTcount: A:0.13, C:0.06, G:0.11, T:0.69
Consensus pattern (6 bp):
TTTTGA
Found at i:32760783 original size:17 final size:17
Alignment explanation
Indices: 32760763--32760825 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
32760753 TAATTTCAAG
32760763 AATTATGTAATGTTTTT
1 AATTATGTAATGTTTTT
* ***
32760780 AATTATGTAGTGATTCAA
1 AATTATGTAATG-TTTTT
*
32760798 AGACTTATGTAATATTTTT
1 A-A-TTATGTAATGTTTTT
32760817 AATTATGTA
1 AATTATGTA
32760826 GTGATTCAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 18 0.53
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (17 bp):
AATTATGTAATGTTTTT
Found at i:32760787 original size:37 final size:37
Alignment explanation
Indices: 32760760--32760834 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
32760750 TGTTAATTTC
* *
32760760 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
* *
32760797 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
32760834 A
1 A
32760835 TTCGGGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
Found at i:32763667 original size:231 final size:231
Alignment explanation
Indices: 32763262--32763738 Score: 688
Period size: 231 Copynumber: 2.1 Consensus size: 231
32763252 CCTGTAACAA
* * *
32763262 TCACACTTGGATAACCTAATCATTTGTTTCTTGAATACTAAGTAGACTAAGACAAACTAATGAGT
1 TCACACTTGGATAGCATAATCATTTGATTCTTGAATACTAAGTAGACTAAGACAAACTAATGAGT
32763327 CTTATATACCATATCAACTCATTTGAGCATGGTCATGCATTTATAGTCTCACTTGATCAAAAAAC
66 CTTATATACCATATCAACTCATTTGAGCATGGTCATGCATTTATAGTCTCACTTGATCAAAAAAC
*** * * * * ** *
32763392 CTGGGATATCACTCTTATTAAGTAGGAGAGACAAATCGTATCTTGATCGTTTACATAC-CACTAC
131 CTAACATATCACTCCTATTAAATAGGAGAGAAAAATCCTATCTTGATCAATCACAT-CTCACTAC
* *** *
32763456 ATAGATTGTGGCATACCTAACACAAGTCTTGTAGTAG
195 ATAGATTGTGGCATACCCAACACAAGTCCCATAGCAG
* * *
32763493 TCACACTTGTATAGCATAATTATTTGATTCTTGAATGCTAAGTAGACTAAGACAAACTAATGAGT
1 TCACACTTGGATAGCATAATCATTTGATTCTTGAATACTAAGTAGACTAAGACAAACTAATGAGT
* * *
32763558 CTTATAT-CTCATATTAACTCATTTGAGCATGGTCATGCATTTCTAGTCTCACTTGATCAAAATA
66 CTTATATAC-CATATCAACTCATTTGAGCATGGTCATGCATTTATAGTCTCACTTGATCAAAAAA
*
32763622 CCTAACATATCACTCCTATTAAATAGGAGGGAAAAATCCTATCTTGATCAATCACATCTCACTAC
130 CCTAACATATCACTCCTATTAAATAGGAGAGAAAAATCCTATCTTGATCAATCACATCTCACTAC
*
32763687 ATGGATTGTGGCATACCCAACACAAGTCCCATAGCAG
195 ATAGATTGTGGCATACCCAACACAAGTCCCATAGCAG
32763724 TCACACTTGGATAGC
1 TCACACTTGGATAGC
32763739 CCTGTAGAAA
Statistics
Matches: 217, Mismatches: 27, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
230 2 0.01
231 215 0.99
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (231 bp):
TCACACTTGGATAGCATAATCATTTGATTCTTGAATACTAAGTAGACTAAGACAAACTAATGAGT
CTTATATACCATATCAACTCATTTGAGCATGGTCATGCATTTATAGTCTCACTTGATCAAAAAAC
CTAACATATCACTCCTATTAAATAGGAGAGAAAAATCCTATCTTGATCAATCACATCTCACTACA
TAGATTGTGGCATACCCAACACAAGTCCCATAGCAG
Found at i:32764230 original size:32 final size:33
Alignment explanation
Indices: 32764163--32764244 Score: 130
Period size: 32 Copynumber: 2.5 Consensus size: 33
32764153 TCAAGATTCC
32764163 AACAAATACCTTAATGCCTTTTGTCAAAAAAAA
1 AACAAATACCTTAATGCCTTTTGTCAAAAAAAA
* **
32764196 AACAAATACCTTAGTGCCTTTT-TTTAAAAAAA
1 AACAAATACCTTAATGCCTTTTGTCAAAAAAAA
32764228 AACAAATACCTTAATGC
1 AACAAATACCTTAATGC
32764245 TTACATGATA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
32 24 0.53
33 21 0.47
ACGTcount: A:0.46, C:0.18, G:0.06, T:0.29
Consensus pattern (33 bp):
AACAAATACCTTAATGCCTTTTGTCAAAAAAAA
Found at i:32786099 original size:3 final size:3
Alignment explanation
Indices: 32786093--32786119 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32786083 AGTAGCAATT
32786093 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
32786120 TTTTGAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:32786221 original size:36 final size:38
Alignment explanation
Indices: 32786153--32786223 Score: 94
Period size: 36 Copynumber: 1.9 Consensus size: 38
32786143 GAAGTAAATA
*
32786153 ATAACTAATAAAAATGATATAATTAGACAAATATATAT
1 ATAACTAATAAAAATGAAATAATTAGACAAATATATAT
*
32786191 ATAA-TAA-AAAAATGAAATAAATTATA-AAATATA
1 ATAACTAATAAAAATGAAAT-AATTAGACAAATATA
32786224 CTAATTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
36 17 0.57
37 9 0.30
38 4 0.13
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (38 bp):
ATAACTAATAAAAATGAAATAATTAGACAAATATATAT
Found at i:32786309 original size:12 final size:12
Alignment explanation
Indices: 32786278--32786316 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
32786268 AGATAAAAAC
*
32786278 TAATAATAACAAG
1 TAATAATAA-TAG
*
32786291 CAATAATAATAG
1 TAATAATAATAG
32786303 TAATAATAATAG
1 TAATAATAATAG
32786315 TA
1 TA
32786317 CCAAATTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 15 0.65
13 8 0.35
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (12 bp):
TAATAATAATAG
Found at i:32788456 original size:43 final size:41
Alignment explanation
Indices: 32788328--32788457 Score: 147
Period size: 43 Copynumber: 3.0 Consensus size: 41
32788318 CATAGGATTT
32788328 TCGATATGTGTTATCGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGTTA-CGTGTAAGACC-CGTCTGGGACGTTGGCA
* *
32788371 TCGACT-TGTGTTTACGTGTAAGAGCCTGTCTAGGACAG-TGGCA
1 TCGA-TATGTG-TTACGTGTAAGA-CCCGTCTGGGAC-GTTGGCA
*
32788414 TCGATATGTGATTACATGTAAGACCGCGTCTGGGACGTTGGCA
1 TCGATATGTG-TTACGTGTAAGACC-CGTCTGGGACGTTGGCA
32788457 T
1 T
32788458 TGTACGAGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
42 4 0.05
43 63 0.85
44 7 0.09
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (41 bp):
TCGATATGTGTTACGTGTAAGACCCGTCTGGGACGTTGGCA
Found at i:32789125 original size:14 final size:15
Alignment explanation
Indices: 32789101--32789135 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
32789091 TACTTTAATC
32789101 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
32789116 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
32789131 ATGGT
1 ATGGT
32789136 AATGTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:32789497 original size:21 final size:21
Alignment explanation
Indices: 32789473--32789513 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32789463 AAAAAATTGA
* *
32789473 ATATGTGCTGTTCAATTTTGT
1 ATATATGCTGTTAAATTTTGT
32789494 ATATATGCTGTTAAATTTTG
1 ATATATGCTGTTAAATTTTG
32789514 ACGTATAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.17, T:0.51
Consensus pattern (21 bp):
ATATATGCTGTTAAATTTTGT
Found at i:32789557 original size:47 final size:47
Alignment explanation
Indices: 32789495--32789883 Score: 619
Period size: 47 Copynumber: 8.4 Consensus size: 47
32789485 CAATTTTGTA
* *
32789495 TATATGCTGTTAAATTTTGACGTATAAATGCAGTCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
* * *
32789542 TATATGCTATCAAATTTCGATGTATAAATGCAGTCCAATTATATGTG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
32789589 TATATGCTGTCAAATTTTGATGTAT-AATGCAGTCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
*
32789635 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATACATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
32789682 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
32789729 TATATGCTGTCAAATTTTGATGTAT-AATGCAGTCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
* *
32789775 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-T-TGTA
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
* * * *
32789820 TATATGCTCTTAAATTTTGATGTATAAATGCAGTCCAATT-T-TGTA
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
*
32789865 TATATGCTGTCCAATTTTG
1 TATATGCTGTCAAATTTTG
32789884 GTGAAAAAAA
Statistics
Matches: 323, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
45 61 0.19
46 92 0.28
47 170 0.53
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (47 bp):
TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
Found at i:32789638 original size:93 final size:94
Alignment explanation
Indices: 32789495--32789883 Score: 619
Period size: 93 Copynumber: 4.2 Consensus size: 94
32789485 CAATTTTGTA
* * * *
32789495 TATATGCTGTTAAATTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTATCAAATTTC
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
*
32789560 GATGTATAAATGCAGTCCAATTATATGTG
66 GATGTATAAATGCAGTCCAATTATATATG
32789589 TATATGCTGTCAAATTTTGATGTAT-AATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
*
32789653 GATGTATAAATGCAGTCCAATTATACATG
66 GATGTATAAATGCAGTCCAATTATATATG
32789682 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
32789747 GATGTAT-AATGCAGTCCAATTATATATG
66 GATGTATAAATGCAGTCCAATTATATATG
* * * *
32789775 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-T-TGTATATATGCTCTTAAATTTT
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
* *
32789838 GATGTATAAATGCAGTCCAATT-T-TGTA
66 GATGTATAAATGCAGTCCAATTATATATG
*
32789865 TATATGCTGTCCAATTTTG
1 TATATGCTGTCAAATTTTG
32789884 GTGAAAAAAA
Statistics
Matches: 279, Mismatches: 14, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
90 20 0.07
91 26 0.09
92 15 0.05
93 149 0.53
94 69 0.25
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (94 bp):
TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
GATGTATAAATGCAGTCCAATTATATATG
Found at i:32789650 original size:140 final size:140
Alignment explanation
Indices: 32789495--32789883 Score: 642
Period size: 140 Copynumber: 2.8 Consensus size: 140
32789485 CAATTTTGTA
* * *
32789495 TATATGCTGTTAAATTTTGACGTATAAATGCAGTCCAATTATATATGTATATGCTATCAAATTTC
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTATCAAATTTT
32789560 GATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTGATGTATAATGCAGTCCA
66 GATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTGATGTATAATGCAGTCCA
32789625 ATTATATATG
131 ATTATATATG
* *
32789635 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATACATGTATATGCTGTCAAATTTT
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTATCAAATTTT
*
32789700 GATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTTGATGTATAATGCAGTCCA
66 GATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTGATGTATAATGCAGTCCA
32789765 ATTATATATG
131 ATTATATATG
* * * *
32789775 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-T-TGTATATATGCTCTTAAATTTT
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTATCAAATTTT
* *
32789838 GATGTATAAATGCAGTCCAATT-T-TGTATATATGCTGTCCAATTTTG
66 GATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTG
32789884 GTGAAAAAAA
Statistics
Matches: 235, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
136 20 0.09
137 1 0.00
138 39 0.17
139 1 0.00
140 174 0.74
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (140 bp):
TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTATCAAATTTT
GATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTGATGTATAATGCAGTCCA
ATTATATATG
Found at i:32789929 original size:23 final size:23
Alignment explanation
Indices: 32789903--32789954 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
32789893 AAATGTTGCT
*
32789903 CAAATTGTTGTATATATGCTGCC
1 CAAATTGCTGTATATATGCTGCC
*
32789926 CAAATTGCTGTATATATGCTGTC
1 CAAATTGCTGTATATATGCTGCC
32789949 CAAATT
1 CAAATT
32789955 TTGGTGTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (23 bp):
CAAATTGCTGTATATATGCTGCC
Found at i:32790010 original size:23 final size:23
Alignment explanation
Indices: 32789903--32790011 Score: 76
Period size: 23 Copynumber: 4.7 Consensus size: 23
32789893 AAATGTTGCT
* * *
32789903 CAAATTGTTGTATATATGCTGCC
1 CAAATTGGTGTATAAATGCTGTC
* *
32789926 CAAATTGCTGTATATATGCTGTC
1 CAAATTGGTGTATAAATGCTGTC
*
32789949 CAAATTTTGGTGTGA-AAATGCTATC
1 CAAA--TTGGTGT-ATAAATGCTGTC
* ** *
32789974 TAGTTTGGTATATAAATGCTGTC
1 CAAATTGGTGTATAAATGCTGTC
* *
32789997 CAGATTGATGTATAA
1 CAAATTGGTGTATAA
32790012 TAGTTGTCCA
Statistics
Matches: 68, Mismatches: 14, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
22 1 0.01
23 51 0.75
25 15 0.22
26 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (23 bp):
CAAATTGGTGTATAAATGCTGTC
Found at i:32796652 original size:14 final size:15
Alignment explanation
Indices: 32796628--32796662 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
32796618 TACTTTAATC
32796628 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
32796643 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
32796658 ATGGT
1 ATGGT
32796663 AATGTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:32797081 original size:47 final size:47
Alignment explanation
Indices: 32797019--32797499 Score: 735
Period size: 47 Copynumber: 10.4 Consensus size: 47
32797009 CAATTTTGTA
*
32797019 TATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
*
32797066 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATGTG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
32797113 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
*
32797160 TATATGCTGTCAAATTTTGATGTAT-AATGCGGTCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
* * *
32797206 CATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-T-TGTA
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
*
32797251 TATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
* *
32797298 TATATGCTGTCAAATTTTGATGTAT-AATACAATCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
* * *
32797344 TATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATT-T-TGTA
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
* *
32797389 TATATGTTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATG
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
* * * *
32797436 TATATGCTGTCAAATTTTAATGTATAAATGTAGTCCAATT-T-TGTA
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
*
32797481 TATATGCTGTCCAATTTTG
1 TATATGCTGTCAAATTTTG
32797500 GTGAAAAAAA
Statistics
Matches: 397, Mismatches: 31, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
45 100 0.25
46 92 0.23
47 205 0.52
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (47 bp):
TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATG
Found at i:32797308 original size:138 final size:139
Alignment explanation
Indices: 32797019--32797499 Score: 790
Period size: 138 Copynumber: 3.5 Consensus size: 139
32797009 CAATTTTGTA
*
32797019 TATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
* *
32797084 GATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTGATGTATAAATGCAGTCC
66 GATGTATAAATGCAGTCCAATT-T-TGTATATATGCTGTTAAATTTTGATGTATAAATGCAGTCC
32797149 AATTATATATG
129 AATTATATATG
* *
32797160 TATATGCTGTCAAATTTTGATGTAT-AATGCGGTCCAATTATATATGCATATGCTGTCAAATTTT
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
32797224 GATGTATAAATGCAGTCCAATTTTGTATATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAA
66 GATGTATAAATGCAGTCCAATTTTGTATATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAA
32797289 TTATATATG
131 TTATATATG
* * *
32797298 TATATGCTGTCAAATTTTGATGTAT-AATACAATCCAATTATATATGTATATGCTGTTAAATTTT
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
*
32797362 GATGTATAAATGCAGTCCAATTTTGTATATATGTTGTTAAATTTTGATGTATAAATGCAGTCCAA
66 GATGTATAAATGCAGTCCAATTTTGTATATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAA
32797427 TTATATATG
131 TTATATATG
* * * * *
32797436 TATATGCTGTCAAATTTTAATGTATAAATGTAGTCCAATT-T-TGTATATATGCTGTCCAATTTT
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
32797499 G
66 G
32797500 GTGAAAAAAA
Statistics
Matches: 320, Mismatches: 19, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
137 19 0.06
138 206 0.64
139 12 0.04
140 59 0.18
141 24 0.08
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (139 bp):
TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTT
GATGTATAAATGCAGTCCAATTTTGTATATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAA
TTATATATG
Found at i:32797382 original size:185 final size:185
Alignment explanation
Indices: 32797017--32797499 Score: 760
Period size: 185 Copynumber: 2.6 Consensus size: 185
32797007 TTCAATTTTG
32797017 TATATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATT
1 TATATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATT
* *
32797082 TTGATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTGATGTATAAATGCAGT
66 TTGATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTGATGTATAAATACAAT
*
32797147 CCAATTATATATGTATATGCTGTCAAATTTTGATGTATAATGCGGTCCAATTATA
131 CCAATTATATATGTATATGCTGTCAAATTTTGATGTATAATGCAGTCCAATTATA
* * * *
32797202 TATGCATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-T-TGTATATATGCTGTTAAA
1 TAT--ATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAA
*
32797265 TTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTTGATGTAT-AATACA
64 TTTTGATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTGATGTATAAATACA
* * *
32797329 ATCCAATTATATATGTATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTTTG
129 ATCCAATTATATATGTATATGCTGTCAAATTTTGATGTAT-AATGCAGTCCAATTATA
*
32797387 TATATATGTTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATT
1 TATATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATT
* * * *
32797452 TTAATGTATAAATGTAGTCCAATT-T-TGTATATATGCTGTCCAATTTTG
66 TTGATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTG
32797500 GTGAAAAAAA
Statistics
Matches: 272, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
183 57 0.21
184 45 0.17
185 131 0.48
186 1 0.00
187 38 0.14
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (185 bp):
TATATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATT
TTGATGTATAAATGCAGTCCAATTATATGTGTATATGCTGTCAAATTTTGATGTATAAATACAAT
CCAATTATATATGTATATGCTGTCAAATTTTGATGTATAATGCAGTCCAATTATA
Found at i:32797532 original size:92 final size:91
Alignment explanation
Indices: 32797009--32797499 Score: 693
Period size: 92 Copynumber: 5.3 Consensus size: 91
32796999 ATGTGCTGTT
*
32797009 CAATTTTGTATATATGCTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCT
1 CAATTTTGTATATATGCTGTCAAATTTTGATGTATAAATGCAGT-CAATTATATATGTATATGCT
32797074 GTCAAATTTTGATGTATAAATGCAGTC
65 GTCAAATTTTGATGTATAAATGCAGTC
*
32797101 CAATTATATGTGTATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATG
1 CAATT-T-TGTATATATGCTGTCAAATTTTGATGTATAAATGCAGT-CAATTATATATGTATATG
*
32797166 CTGTCAAATTTTGATGTAT-AATGCGGTC
63 CTGTCAAATTTTGATGTATAAATGCAGTC
* * * *
32797194 CAATTATATATGCATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-T-TGTATATATG
1 CAATTTTGTAT--ATATGCTGTCAAATTTTGATGTATAAATGCAGT-CAATTATATATGTATATG
*
32797257 CTGTTAAATTTTGATGTATAAATGCAGTC
63 CTGTCAAATTTTGATGTATAAATGCAGTC
* * * *
32797286 CAATTATATATGTATATGCTGTCAAATTTTGATGTAT-AATACAATCCAATTATATATGTATATG
1 CAATT-T-TGTATATATGCTGTCAAATTTTGATGTATAAATGCAGT-CAATTATATATGTATATG
*
32797350 CTGTTAAATTTTGATGTATAAATGCAGTC
63 CTGTCAAATTTTGATGTATAAATGCAGTC
* *
32797379 CAATTTTGTATATATGTTGTTAAATTTTGATGTATAAATGCAGTCCAATTATATATGTATATGCT
1 CAATTTTGTATATATGCTGTCAAATTTTGATGTATAAATGCAGT-CAATTATATATGTATATGCT
* *
32797444 GTCAAATTTTAATGTATAAATGTAGTC
65 GTCAAATTTTGATGTATAAATGCAGTC
*
32797471 CAATTTTGTATATATGCTGTCCAATTTTG
1 CAATTTTGTATATATGCTGTCAAATTTTG
32797500 GTGAAAAAAA
Statistics
Matches: 361, Mismatches: 28, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
91 66 0.18
92 122 0.34
93 95 0.26
94 78 0.22
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (91 bp):
CAATTTTGTATATATGCTGTCAAATTTTGATGTATAAATGCAGTCAATTATATATGTATATGCTG
TCAAATTTTGATGTATAAATGCAGTC
Found at i:32797544 original size:23 final size:23
Alignment explanation
Indices: 32797518--32797569 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
32797508 AAATGTTGCT
*
32797518 CAAATTGTTGTATATATGCTGCC
1 CAAATTGCTGTATATATGCTGCC
*
32797541 CAAATTGCTGTATATATGCTGTC
1 CAAATTGCTGTATATATGCTGCC
32797564 CAAATT
1 CAAATT
32797570 TTGATGTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (23 bp):
CAAATTGCTGTATATATGCTGCC
Found at i:32798020 original size:44 final size:44
Alignment explanation
Indices: 32797953--32798522 Score: 356
Period size: 44 Copynumber: 12.7 Consensus size: 44
32797943 TCTGAGTTGT
* *
32797953 TTCAATCTGCTCCACTACTACTTCAGGGAGATAAGATTGGTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATC
* * *
32797997 TTCAA-CTTGCTCCACTGCAACTTCAGGGAGGTAAGGTTTGCTATC
1 TTCAATC-TGCTCCACTGCAACTTCAGGGAGATAA-GATTGGTATC
* * *
32798042 TTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTTA-C
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTATC
* * * **
32798086 TTCAATCTGCTCTATTGCAACTTCAAGG-GATAAGATTCATCAT-
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGT-ATC
* **
32798129 TTTAAT-TCGCTCCACTGCAACTTCATTGAGATAAGACTT-GTATC
1 TTCAATCT-GCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTATC
* * *
32798173 TTCAACCTGCTCCACTGCAACTTCAAGGAGATAGGACTT-G--TC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTATC
* * * * * * *
32798215 AT-GATCTGCTCTACTGCAACTTCAGAGAGGTAAGATCTGCTATT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGGTATC
* * *
32798259 TTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTATG
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTATC
* ** * ** * * *
32798304 GTGGATTTAATCCAACCTACTAAAACTTCAGAGGTG-TAGGATT--TATC
1 TTCAATCTGCTCC-A-CTGC---AACTTCAG-GGAGATAAGATTGGTATC
* * * * * * *
32798351 GTTTTAATCCGCTCCACTGCAATTTTAGGGAGATAGGATTAGTAGC
1 --TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATC
* *
32798397 TTCAATCTGCCCCACTGCAGCTTCAGGGAGATAAGATTTGTAGCCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG--G--TATC
* * * *
32798446 TTCAATCTGCTCTACTGCAACTTCAGGGGGATAAGGTTTGCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTGGTATC
* * *
32798491 TTCACTCTGCTCCACTACAACTTCAAGGAGAT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGAT
32798523 GAGACTTGTC
Statistics
Matches: 403, Mismatches: 89, Indels: 67
0.72 0.16 0.12
Matches are distributed among these distances:
40 1 0.00
41 27 0.07
42 7 0.02
43 35 0.09
44 139 0.34
45 117 0.29
46 6 0.01
47 10 0.02
48 1 0.00
49 44 0.11
50 13 0.03
51 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATC
Found at i:32798463 original size:49 final size:47
Alignment explanation
Indices: 32798356--32798531 Score: 155
Period size: 45 Copynumber: 3.8 Consensus size: 47
32798346 TTATCGTTTT
* * * * * *
32798356 AATCCGCTCCACTGCAATTTTAGGGAGATAGGA-TT-AG-TAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGCTATCTTC
* * *
32798400 AATCTGCCCCACTGCAGCTTCAGGGAGATAAGATTTGTAGCCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT-G-CTATCTTC
* * *
32798449 AATCTGCTCTACTGCAACTTCAGGGGGATAAG-GTT-TGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGCTATCTTC
* * * *
32798494 ACTCTGCTCCACTACAACTTCAAGGAGATGAGACTTGT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
32798532 CGTTTTCAAT
Statistics
Matches: 105, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
44 27 0.26
45 36 0.34
46 3 0.03
47 3 0.03
48 2 0.02
49 34 0.32
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (47 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGCTATCTTC
Found at i:32798624 original size:50 final size:50
Alignment explanation
Indices: 32798548--32799135 Score: 550
Period size: 50 Copynumber: 11.8 Consensus size: 50
32798538 CAATCTGTTC
* * *
32798548 GCCAAGGAAGTAAGATTCACTGTTGTAGCTTCTATCTATTCCACTACACC
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
* * * ** * *
32798598 ACCAAGGAAGTAAGATTCGCTGTTGTAGCCTCAATCTTTTTAACTGCAAT
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
* ** * * * *
32798648 GTCGGGGAAGCAAGATTCGTTGTTGTAGCTTCAATCTATTCCAATACACC
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
* * * ** * *
32798698 GCCAAGGAAGTAAGATTCACTGTTGTAGCTTCAATATTTTTAACTGCAAT
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
* ** * * * *
32798748 GTCGGGGAAGCAAGATTTGCTGTTGTAGCTTCAACCTATTCCACTACACC
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
* * * * * * *
32798798 GCCAGGGAAGTAAGATTCGTTATTGTAGCTTCAATCTTTTCAACTGCAAT
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
* * * *
32798848 GTCGAGGAAGAAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACC
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
* * * * * *
32798898 GCCAAGGAAGTAAGATTCGCTGTTGTGGTTTCAATCTTTTCAACTGCAAT
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
* * * * * *
32798948 GTCGAGGAAGCAAGATTAGCTGTTGTAGCTTCAATTTGTTCCACTACACT
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
* * ** *
32798998 GCCAGGGAAGTAAGATTCGTTG-TGTTAGCTTCAATCT-TCTTAACTACAAT
1 GCCAAGGAAGTAAGATTCGCTGTTG-TAGCTTCAATCTAT-TCCACTACACT
* ** * * *
32799048 GTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACC
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
*
32799098 GCGAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTA
1 GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTA
32799136 CAACACTTCA
Statistics
Matches: 414, Mismatches: 120, Indels: 8
0.76 0.22 0.01
Matches are distributed among these distances:
49 3 0.01
50 408 0.99
51 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (50 bp):
GCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACT
Found at i:32798726 original size:100 final size:100
Alignment explanation
Indices: 32798553--32799134 Score: 869
Period size: 100 Copynumber: 5.8 Consensus size: 100
32798543 TGTTCGCCAA
* * * *
32798553 GGAAGTAAGATTCACTGTTGTAGCTTCTATCTATTCCACTACACCACCAAGGAAGTAAGATTCGC
1 GGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGC
*
32798618 TGTTGTAGCCTCAATCTTTTTAACTGCAATGTCGG
66 TGTTGTAGCTTCAATCTTTTTAACTGCAATGTCGG
* * *
32798653 GGAAGCAAGATTCGTTGTTGTAGCTTCAATCTATTCCAATACACCGCCAAGGAAGTAAGATTCAC
1 GGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGC
*
32798718 TGTTGTAGCTTCAATATTTTTAACTGCAATGTCGG
66 TGTTGTAGCTTCAATCTTTTTAACTGCAATGTCGG
* * * *
32798753 GGAAGCAAGATTTGCTGTTGTAGCTTCAACCTATTCCACTACACCGCCAGGGAAGTAAGATTCGT
1 GGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGC
* * *
32798818 TATTGTAGCTTCAATCTTTTCAACTGCAATGTCGA
66 TGTTGTAGCTTCAATCTTTTTAACTGCAATGTCGG
*
32798853 GGAAGAAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGC
1 GGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGC
* * * *
32798918 TGTTGTGGTTTCAATCTTTTCAACTGCAATGTCGA
66 TGTTGTAGCTTCAATCTTTTTAACTGCAATGTCGG
* * * * * *
32798953 GGAAGCAAGATTAGCTGTTGTAGCTTCAATTTGTTCCACTACACTGCCAGGGAAGTAAGATTCGT
1 GGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGC
* *
32799018 TG-TGTTAGCTTCAATCTTCTTAACTACAATGTCGG
66 TGTTG-TAGCTTCAATCTTTTTAACTGCAATGTCGG
* *
32799053 GGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACCGCGAAGGAAGTAAGATTCGC
1 GGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGC
32799118 TGTTGTAGCTTCAATCT
66 TGTTGTAGCTTCAATCT
32799135 ACAACACTTC
Statistics
Matches: 433, Mismatches: 47, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
99 2 0.00
100 429 0.99
101 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (100 bp):
GGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTCCACTACACCGCCAAGGAAGTAAGATTCGC
TGTTGTAGCTTCAATCTTTTTAACTGCAATGTCGG
Found at i:32801180 original size:44 final size:44
Alignment explanation
Indices: 32801112--32801231 Score: 159
Period size: 51 Copynumber: 2.6 Consensus size: 44
32801102 TTTGAGTACT
* *
32801112 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTGCACTTA
1 TCTGATCAGTGACAAGTGACAAGTGGTAGCTTTAGCTACACTTA
32801156 TCTGATCAGTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGAC-------AAGTGGTAGCTTTAGCTACACTTA
32801207 TCTGATCAGTGACAAGTGACAAGTG
1 TCTGATCAGTGACAAGTGACAAGTG
32801232 ATAAGTGATA
Statistics
Matches: 67, Mismatches: 2, Indels: 14
0.81 0.02 0.17
Matches are distributed among these distances:
44 24 0.36
51 43 0.64
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
TCTGATCAGTGACAAGTGACAAGTGGTAGCTTTAGCTACACTTA
Found at i:32801195 original size:51 final size:50
Alignment explanation
Indices: 32801119--32801345 Score: 328
Period size: 50 Copynumber: 4.4 Consensus size: 50
32801109 ACTTCTGATC
*
32801119 AGTGACAAGTGATAAGTGGTAGCTTTAGCTGCACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
32801170 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
32801221 AGTGACAAGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
1 AGTGAC-------AAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
*
32801278 AGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
* * *
32801328 AGAGATAAATGATAAGTG
1 AGTGACAAGTGATAAGTG
32801346 ATTCCGTGTA
Statistics
Matches: 165, Mismatches: 4, Indels: 15
0.90 0.02 0.08
Matches are distributed among these distances:
50 60 0.36
51 56 0.34
57 32 0.19
58 17 0.10
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.29
Consensus pattern (50 bp):
AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
Found at i:32803272 original size:5 final size:5
Alignment explanation
Indices: 32803262--32803304 Score: 61
Period size: 5 Copynumber: 8.4 Consensus size: 5
32803252 TCTCTCCTTC
32803262 TTCTT TTCTT TTCTTT TTCTT TTCTT TTCTT CTTCTT TT-TT TT
1 TTCTT TTCTT TTC-TT TTCTT TTCTT TTCTT -TTCTT TTCTT TT
32803305 ATGAAACATT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.11
5 22 0.61
6 10 0.28
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTCTT
Found at i:32803279 original size:11 final size:11
Alignment explanation
Indices: 32803265--32803301 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
32803255 CTCCTTCTTC
32803265 TTTTCTTTTCT
1 TTTTCTTTTCT
32803276 TTTTCTTTTC-
1 TTTTCTTTTCT
32803286 TTTTCTTCTTCT
1 TTTTCTT-TTCT
32803298 TTTT
1 TTTT
32803302 TTTATGAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 7 0.29
11 13 0.54
12 4 0.17
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTCTTTTCT
Found at i:32803283 original size:16 final size:16
Alignment explanation
Indices: 32803258--32803304 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
32803248 TTGGTCTCTC
32803258 CTTCTTCTTTTCTTTT
1 CTTCTTCTTTTCTTTT
*
32803274 CTTTTTCTTTTCTTTT
1 CTTCTTCTTTTCTTTT
32803290 CTTCTTCTTTT-TTTT
1 CTTCTTCTTTTCTTTT
32803305 ATGAAACATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
15 4 0.14
16 25 0.86
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (16 bp):
CTTCTTCTTTTCTTTT
Found at i:32806851 original size:15 final size:15
Alignment explanation
Indices: 32806831--32806869 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
32806821 TCAAAAACTG
32806831 TTAGTTAGTTAGCAA
1 TTAGTTAGTTAGCAA
*
32806846 TTAGTTAGTTAGCGA
1 TTAGTTAGTTAGCAA
*
32806861 TTGGTTAGT
1 TTAGTTAGT
32806870 AGTAGTTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.44
Consensus pattern (15 bp):
TTAGTTAGTTAGCAA
Found at i:32807433 original size:18 final size:16
Alignment explanation
Indices: 32807410--32807457 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
32807400 AAAAAAAGTC
*
32807410 ATTTTAGTTTTTTATTTT
1 ATTTTA-TTTTTTA-TCT
32807428 ATTTTATTTTATTATCT
1 ATTTTATTTT-TTATCT
*
32807445 ATTTTAATTTTTA
1 ATTTTATTTTTTA
32807458 AACTTCTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 3 0.11
17 15 0.56
18 9 0.33
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (16 bp):
ATTTTATTTTTTATCT
Found at i:32808944 original size:13 final size:13
Alignment explanation
Indices: 32808926--32808950 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32808916 GAATTCAAAA
32808926 TCAGCTAGCTAAC
1 TCAGCTAGCTAAC
32808939 TCAGCTAGCTAA
1 TCAGCTAGCTAA
32808951 ATTTAGACGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (13 bp):
TCAGCTAGCTAAC
Found at i:32810865 original size:26 final size:22
Alignment explanation
Indices: 32810817--32810860 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
32810807 TGAAACACGA
32810817 GAGGAGTGTCATTTTTTTCTTT
1 GAGGAGTGTCATTTTTTTCTTT
32810839 GAGGAGTGTCATTTTTTTCTTT
1 GAGGAGTGTCATTTTTTTCTTT
32810861 CTTTGTGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.09, G:0.23, T:0.55
Consensus pattern (22 bp):
GAGGAGTGTCATTTTTTTCTTT
Found at i:32815099 original size:17 final size:17
Alignment explanation
Indices: 32815070--32815102 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32815060 TAGGCAGTAG
32815070 AAGAAAAGTAAGAGAAA
1 AAGAAAAGTAAGAGAAA
32815087 AAGAAGAAG-AAGAGAA
1 AAGAA-AAGTAAGAGAA
32815103 GGAATGGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (17 bp):
AAGAAAAGTAAGAGAAA
Found at i:32815765 original size:32 final size:32
Alignment explanation
Indices: 32815718--32815789 Score: 101
Period size: 32 Copynumber: 2.2 Consensus size: 32
32815708 AACCGATTTT
* *
32815718 CTTTTCTTCTCCTTAATCTCAATCGATCCTTTC
1 CTTTTCTTCCCCTTAATCTCAATCCAT-CTTTC
*
32815751 CTTTT-TTCCCCTTAATCTCAATCCATCTTTT
1 CTTTTCTTCCCCTTAATCTCAATCCATCTTTC
32815782 CTTTTCTT
1 CTTTTCTT
32815790 TTCCCTAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
31 9 0.26
32 21 0.60
33 5 0.14
ACGTcount: A:0.14, C:0.32, G:0.01, T:0.53
Consensus pattern (32 bp):
CTTTTCTTCCCCTTAATCTCAATCCATCTTTC
Found at i:32815876 original size:21 final size:21
Alignment explanation
Indices: 32815843--32815882 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32815833 CAACGTGGCA
*
32815843 AGTTAACTAGCCACGTCACTT
1 AGTTAACCAGCCACGTCACTT
* *
32815864 AGTTAACCGGCCATGTCAC
1 AGTTAACCAGCCACGTCAC
32815883 CTATCCCGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (21 bp):
AGTTAACCAGCCACGTCACTT
Found at i:32816019 original size:20 final size:20
Alignment explanation
Indices: 32815968--32816025 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
32815958 TTGTTATTTT
* *
32815968 TTGAAAGTTGAATGACTAGG
1 TTGAAAGTTGAGTGATTAGG
*
32815988 TTGAAAGTTGAGTGATTGGG
1 TTGAAAGTTGAGTGATTAGG
32816008 TTGAAAGTTGAGTGATTA
1 TTGAAAGTTGAGTGATTA
32816026 TTTTGTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.31, C:0.02, G:0.33, T:0.34
Consensus pattern (20 bp):
TTGAAAGTTGAGTGATTAGG
Found at i:32817470 original size:18 final size:18
Alignment explanation
Indices: 32817447--32817489 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
32817437 GCATTGATTC
32817447 TCAAAAGTATTTTTAGTG
1 TCAAAAGTATTTTTAGTG
*
32817465 TCAAAAGTATTTTTGGTG
1 TCAAAAGTATTTTTAGTG
32817483 TCAAAAG
1 TCAAAAG
32817490 CGTTTAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.40
Consensus pattern (18 bp):
TCAAAAGTATTTTTAGTG
Found at i:32817754 original size:21 final size:20
Alignment explanation
Indices: 32817697--32817755 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 20
32817687 TATTGAAATT
*
32817697 TATTTTAAATATATAATATTA
1 TATTTT-AATATTTAATATTA
* *
32817718 TATATTTAATTTTTTATTGATTA
1 TAT-TTTAA-TATTTAAT-ATTA
32817741 TATTTTAATATTTAA
1 TATTTTAATATTTAA
32817756 AATATAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
21 10 0.33
22 13 0.43
23 7 0.23
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
TATTTTAATATTTAATATTA
Found at i:32821795 original size:21 final size:21
Alignment explanation
Indices: 32821771--32821810 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
32821761 AATAAACATT
32821771 CTCA-ATTTCAATTCTAAATAA
1 CTCATATTTC-ATTCTAAATAA
*
32821792 CTCATTTTTCATTCTAAAT
1 CTCATATTTCATTCTAAAT
32821811 GTCTTCTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.45
Consensus pattern (21 bp):
CTCATATTTCATTCTAAATAA
Found at i:32831737 original size:24 final size:24
Alignment explanation
Indices: 32831710--32831772 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
32831700 TCACCTCGAT
32831710 CCTCGTACTCATCTTCATCTCAAC
1 CCTCGTACTCATCTTCATCTCAAC
* * * *
32831734 CCTCGCATTCATCTTTATCTCGAC
1 CCTCGTACTCATCTTCATCTCAAC
*
32831758 CTTCGT-CGTCATCTT
1 CCTCGTAC-TCATCTT
32831773 TGTCTCCATC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.16, C:0.38, G:0.08, T:0.38
Consensus pattern (24 bp):
CCTCGTACTCATCTTCATCTCAAC
Found at i:32834657 original size:10 final size:10
Alignment explanation
Indices: 32834642--32834674 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
32834632 ATTTAATTTT
32834642 TATTTTTATA
1 TATTTTTATA
32834652 TATTTTT-TA
1 TATTTTTATA
*
32834661 AATTTTTATA
1 TATTTTTATA
32834671 TATT
1 TATT
32834675 AAAATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TATTTTTATA
Found at i:32834660 original size:17 final size:18
Alignment explanation
Indices: 32834638--32834674 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
32834628 AAGAATTTAA
32834638 TTTTT-ATTTTTATATAT
1 TTTTTAATTTTTATATAT
32834655 TTTTTAAATTTTTATATAT
1 TTTTT-AATTTTTATATAT
32834674 T
1 T
32834675 AAAATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
19 13 0.72
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTAATTTTTATATAT
Found at i:32837989 original size:74 final size:74
Alignment explanation
Indices: 32837900--32838079 Score: 308
Period size: 74 Copynumber: 2.4 Consensus size: 74
32837890 AAAAATTCAT
*
32837900 CGTTCTCAATGGCTGGCT-GTGATTCTACTTCTAAACCATCACCACCTAAAATTGAATGTTGAAA
1 CGTTCTTAATGGCTGG-TAGTGATTCTACTTCTAAACCATCACCACCTAAAATTGAATGTTGAAA
32837964 CTATCACCAC
65 CTATCACCAC
* *
32837974 CGTTCTTAATGGCTGGTGGCGATTCTACTTCTAAACCATCACCACCTAAAATTGAATGTTGAAAC
1 CGTTCTTAATGGCTGGTAGTGATTCTACTTCTAAACCATCACCACCTAAAATTGAATGTTGAAAC
*
32838039 TATCACCAT
66 TATCACCAC
32838048 CGTTCTTAATGGCTGGTAGTGATTCTACTTCT
1 CGTTCTTAATGGCTGGTAGTGATTCTACTTCT
32838080 CCACCACCTA
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
73 1 0.01
74 99 0.99
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (74 bp):
CGTTCTTAATGGCTGGTAGTGATTCTACTTCTAAACCATCACCACCTAAAATTGAATGTTGAAAC
TATCACCAC
Found at i:32839614 original size:32 final size:32
Alignment explanation
Indices: 32839550--32839616 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
32839540 CCAGACCTTA
* * * *
32839550 TGGGTCACACGGGCTGAGTTATTTGGGTCGTG
1 TGGGTCACACAGGCTGAGTTAATTAGGCCGTG
32839582 TGGGTCACACAGGCTG-GTTCAATTAGGCCGTG
1 TGGGTCACACAGGCTGAGTT-AATTAGGCCGTG
32839614 TGG
1 TGG
32839617 CCCTCACGCC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 3 0.10
32 27 0.90
ACGTcount: A:0.15, C:0.18, G:0.39, T:0.28
Consensus pattern (32 bp):
TGGGTCACACAGGCTGAGTTAATTAGGCCGTG
Found at i:32841776 original size:19 final size:19
Alignment explanation
Indices: 32841752--32841822 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
32841742 AAATTTTATA
*
32841752 TTTTATATTTTTTTACGAT
1 TTTTATATTTTTTTACAAT
***
32841771 TTTTATAAAATTTTACAATT
1 TTTTATATTTTTTTACAA-T
*
32841791 TTTTATATATTTTTTATAAT
1 TTTTATAT-TTTTTTACAAT
32841811 TTTTAATATTTT
1 TTTT-ATATTTT
32841823 AATATTTTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
19 14 0.34
20 16 0.39
21 11 0.27
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (19 bp):
TTTTATATTTTTTTACAAT
Found at i:32841782 original size:36 final size:36
Alignment explanation
Indices: 32841723--32841841 Score: 125
Period size: 36 Copynumber: 3.2 Consensus size: 36
32841713 ATTTTGTATA
* *
32841723 ATTTTCTTACGACTTTATAAAATTTT-ATATTTTAT
1 ATTTTTTTACGATTTTATAAAATTTTAATATTTTAT
*
32841758 ATTTTTTTACGATTTTTATAAAATTTTACAATTTTTTAT
1 ATTTTTTTACGA-TTTTATAAAATTTT--AATATTTTAT
** *
32841797 ATATTTTTTATAATTTT-TAATATTTTAATATTTTAT
1 AT-TTTTTTACGATTTTATAAAATTTTAATATTTTAT
32841833 AATTTTTTT
1 -ATTTTTTT
32841842 CTAATTTTTA
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
35 11 0.15
36 28 0.39
37 2 0.03
38 8 0.11
39 14 0.20
40 8 0.11
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (36 bp):
ATTTTTTTACGATTTTATAAAATTTTAATATTTTAT
Found at i:32841840 original size:10 final size:10
Alignment explanation
Indices: 32841752--32841855 Score: 58
Period size: 10 Copynumber: 10.8 Consensus size: 10
32841742 AAATTTTATA
*
32841752 TTTTATATTT
1 TTTTATAATT
**
32841762 TTTTACGA-T
1 TTTTATAATT
**
32841771 TTTTATAAAA
1 TTTTATAATT
*
32841781 TTTTACAATT
1 TTTTATAATT
32841791 TTTTATATATT
1 TTTTATA-ATT
32841802 TTTTATAA--
1 TTTTATAATT
32841810 TTTT-TAA-T
1 TTTTATAATT
* *
32841818 ATTT-TAATA
1 TTTTATAATT
32841827 TTTTATAATTT
1 TTTTATAA-TT
*
32841838 TTTTCTAATT
1 TTTTATAATT
*
32841848 TTTAATAA
1 TTTTATAA
32841856 AAGAAGGGGC
Statistics
Matches: 71, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
7 3 0.04
8 10 0.14
9 10 0.14
10 30 0.42
11 18 0.25
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTATAATT
Found at i:32841847 original size:36 final size:36
Alignment explanation
Indices: 32841744--32841854 Score: 111
Period size: 36 Copynumber: 3.0 Consensus size: 36
32841734 ACTTTATAAA
* * *
32841744 ATTTT-ATATTTTAT-ATTTTTTTACGATTTTTATAAA
1 ATTTTAATATTTTATAATTTTTTT-CTAATTTT-TAAT
* *
32841780 ATTTTACA-ATTTTTTATATATTTTTTATAATTTTTAAT
1 ATTTTA-ATATTTTATA-AT-TTTTTTCTAATTTTTAAT
32841818 ATTTTAATATTTTATAATTTTTTTCTAATTTTTAAT
1 ATTTTAATATTTTATAATTTTTTTCTAATTTTTAAT
32841854 A
1 A
32841855 AAAGAAGGGG
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
36 23 0.37
37 9 0.15
38 17 0.27
39 7 0.11
40 6 0.10
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.65
Consensus pattern (36 bp):
ATTTTAATATTTTATAATTTTTTTCTAATTTTTAAT
Found at i:32841848 original size:19 final size:19
Alignment explanation
Indices: 32841751--32841853 Score: 54
Period size: 18 Copynumber: 5.5 Consensus size: 19
32841741 AAAATTTTAT
*
32841751 ATTTTAT-ATTTTTTTACGA
1 ATTTTATAATTTTTTT-CTA
* ** *
32841770 TTTTTATAAAATTTTAC-A
1 ATTTTATAATTTTTTTCTA
* *
32841788 ATTTTTTATATATTTTTTATA
1 ATTTTATA-AT-TTTTTTCTA
* **
32841809 ATTTT-TAATATTTTAAT-
1 ATTTTATAATTTTTTTCTA
32841826 ATTTTATAATTTTTTTCTA
1 ATTTTATAATTTTTTTCTA
32841845 ATTTT-TAAT
1 ATTTTATAAT
32841854 AAAAGAAGGG
Statistics
Matches: 63, Mismatches: 15, Indels: 13
0.69 0.16 0.14
Matches are distributed among these distances:
17 5 0.08
18 26 0.41
19 15 0.24
20 11 0.17
21 6 0.10
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (19 bp):
ATTTTATAATTTTTTTCTA
Found at i:32841853 original size:18 final size:18
Alignment explanation
Indices: 32841790--32841853 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
32841780 ATTTTACAAT
32841790 TTTTTATATATTTTTTATAA
1 TTTTTA-AT-TTTTTTATAA
* *
32841810 TTTTTAATATTTTAAT-A
1 TTTTTAATTTTTTTATAA
*
32841827 TTTTATAATTTTTTTCTAA
1 TTTT-TAATTTTTTTATAA
32841846 TTTTTAAT
1 TTTTTAAT
32841854 AAAAGAAGGG
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
17 5 0.14
18 19 0.51
19 7 0.19
20 6 0.16
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTAATTTTTTTATAA
Found at i:32841949 original size:86 final size:87
Alignment explanation
Indices: 32841854--32842030 Score: 254
Period size: 87 Copynumber: 2.0 Consensus size: 87
32841844 AATTTTTAAT
** *
32841854 AAAAGAAGGGGCTTAATTG-TTTTTTTTTAAAGG-TTGAGGG-TCTTTTTGATGCATTTTGAAAG
1 AAAAGAA-GGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCT-TTTTTGATGCATTTTAAAAG
*
32841916 TTCAAGTACTC-AATTGAGTGAAAA
64 TTCAAGTAC-CAAAATGAGTGAAAA
*
32841940 AAAATAAGGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCTTTTTTGATGCATTTTAAAAGTT
1 AAAAGAAGGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCTTTTTTGATGCATTTTAAAAGTT
32842005 CAAGTACCAAAATGAGTGAAAA
66 CAAGTACCAAAATGAGTGAAAA
32842027 AAAA
1 AAAA
32842031 AGACTTAATT
Statistics
Matches: 82, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
85 11 0.13
86 19 0.23
87 51 0.62
88 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.36
Consensus pattern (87 bp):
AAAAGAAGGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCTTTTTTGATGCATTTTAAAAGTT
CAAGTACCAAAATGAGTGAAAA
Found at i:32843810 original size:26 final size:27
Alignment explanation
Indices: 32843776--32843834 Score: 86
Period size: 26 Copynumber: 2.2 Consensus size: 27
32843766 CTAAAAACAT
32843776 AAAAATAAAAAATAT-ATAA-TTTTTTA
1 AAAAATAAAAAATATGA-AATTTTTTTA
*
32843802 AAAAATAAAAATTATGAAATTTTTTTA
1 AAAAATAAAAAATATGAAATTTTTTTA
32843829 AAAAAT
1 AAAAAT
32843835 TTTAAAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 16 0.53
27 14 0.47
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (27 bp):
AAAAATAAAAAATATGAAATTTTTTTA
Found at i:32844956 original size:34 final size:34
Alignment explanation
Indices: 32844913--32844981 Score: 104
Period size: 34 Copynumber: 2.0 Consensus size: 34
32844903 TGGAAGAGTG
*
32844913 ACCAAAATACT-AAGTTTCGACAACAATAATAACT
1 ACCAAAATACTAAAATTT-GACAACAATAATAACT
*
32844947 ACCAAAATACTAAAATTTGATAACAATAATAACT
1 ACCAAAATACTAAAATTTGACAACAATAATAACT
32844981 A
1 A
32844982 AAAAAACCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 27 0.84
35 5 0.16
ACGTcount: A:0.54, C:0.17, G:0.04, T:0.25
Consensus pattern (34 bp):
ACCAAAATACTAAAATTTGACAACAATAATAACT
Found at i:32845562 original size:16 final size:16
Alignment explanation
Indices: 32845541--32845578 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
32845531 TTTGGTTCGT
32845541 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
32845557 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
32845573 CGTAAT
1 TGTAAT
32845579 AGTAATTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.37, C:0.03, G:0.34, T:0.26
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:32845929 original size:120 final size:120
Alignment explanation
Indices: 32845792--32846269 Score: 890
Period size: 120 Copynumber: 4.0 Consensus size: 120
32845782 TTAATCATAT
* *
32845792 TTTAACATAATTATTATTAAATATAATTTAATAAAATTATATAATTTAATAAAATTATTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATATT
32845857 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
32845912 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATATT
32845977 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
32846032 TTTAAAATAATTATTATTAAATATAATTTAATAAATATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATATT
32846097 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTAT-AAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
32846151 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTT-ATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATATT
32846215 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAA-ATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
32846269 T
1 T
32846270 ATATAATCTA
Statistics
Matches: 352, Mismatches: 5, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
118 56 0.16
119 69 0.20
120 227 0.64
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATATT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:32846159 original size:21 final size:21
Alignment explanation
Indices: 32846116--32846159 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32846106 TATATGAATT
*
32846116 TACTAAAATCATAATATATAA
1 TACTAAAATCATAATATAAAA
*
32846137 TACTATAAAT-ATAATTTAAAA
1 TACTA-AAATCATAATATAAAA
32846158 TA
1 TA
32846160 ATTATTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (21 bp):
TACTAAAATCATAATATAAAA
Found at i:32846455 original size:9 final size:9
Alignment explanation
Indices: 32846441--32846468 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
32846431 CAAAAAGTTA
32846441 CATGAAATT
1 CATGAAATT
32846450 CATGAAATT
1 CATGAAATT
32846459 CATGAAATT
1 CATGAAATT
32846468 C
1 C
32846469 TATGTCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (9 bp):
CATGAAATT
Found at i:32847743 original size:49 final size:49
Alignment explanation
Indices: 32847671--32847774 Score: 172
Period size: 49 Copynumber: 2.1 Consensus size: 49
32847661 GAAAAAAAAC
* * *
32847671 AAATTAAAATTAAGTTTAATATCATGAATCAAAAGGTGAACAATTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACAATTTATA
*
32847720 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACAATTTATA
32847769 AAATTA
1 AAATTA
32847775 TAACACATGA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.32
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACAATTTATA
Found at i:32850140 original size:14 final size:14
Alignment explanation
Indices: 32850121--32850150 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
32850111 AATAAATTGG
32850121 AATATTAAAAATAA
1 AATATTAAAAATAA
32850135 AATATTAAAAATAA
1 AATATTAAAAATAA
32850149 AA
1 AA
32850151 AAATTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AATATTAAAAATAA
Found at i:32850443 original size:36 final size:36
Alignment explanation
Indices: 32850403--32850476 Score: 96
Period size: 36 Copynumber: 2.1 Consensus size: 36
32850393 TAAAATTAAA
*
32850403 AATAAT-AAAAATAAACTGTTTTGCACTAACTATTAC
1 AATAATCAAAAA-AAACTGATTTGCACTAACTATTAC
***
32850439 AATAATCACTCAAAACTGATTTGCACTAACTATTAC
1 AATAATCAAAAAAAACTGATTTGCACTAACTATTAC
32850475 AA
1 AA
32850477 CCACCTTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 31 0.94
37 2 0.06
ACGTcount: A:0.46, C:0.18, G:0.05, T:0.31
Consensus pattern (36 bp):
AATAATCAAAAAAAACTGATTTGCACTAACTATTAC
Found at i:32852459 original size:16 final size:16
Alignment explanation
Indices: 32852426--32852459 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32852416 TAGAACTGTT
* *
32852426 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
32852442 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
32852458 AA
1 AA
32852460 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:32857237 original size:16 final size:16
Alignment explanation
Indices: 32857204--32857237 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32857194 GGAGATTGTT
* *
32857204 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
32857220 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
32857236 AA
1 AA
32857238 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:32859761 original size:70 final size:69
Alignment explanation
Indices: 32859637--32859800 Score: 199
Period size: 70 Copynumber: 2.3 Consensus size: 69
32859627 GTTGTTTTAT
* * *
32859637 AGGTTTAGCTCAGACGGGTAACCTTATATGTATATACAACTTTGGCCAAACTATTTGATGTG-CA
1 AGGTTTAGC-CCGACGGGTAACCTAATATGTACATACAACTTTGGCCAAACTATTTGATGTGTC-
32859701 GAT-AA
64 GATAAA
*
32859706 AGGTTTAGCCCGTACGGGTAACCTAACT-TGTACATTACAACTTTGGCCAAGCTATTTGATGTGT
1 AGGTTTAGCCCG-ACGGGTAACCTAA-TATGTACA-TACAACTTTGGCCAAACTATTTGATGTGT
32859770 CGATAAA
63 CGATAAA
* *
32859777 AAGTTTAGCCCGGACAGGTAACCT
1 AGGTTTAGCCC-GACGGGTAACCT
32859801 GACACAAATG
Statistics
Matches: 83, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
68 2 0.02
69 26 0.31
70 31 0.37
71 23 0.28
72 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (69 bp):
AGGTTTAGCCCGACGGGTAACCTAATATGTACATACAACTTTGGCCAAACTATTTGATGTGTCGA
TAAA
Found at i:32863094 original size:17 final size:17
Alignment explanation
Indices: 32863072--32863107 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
32863062 GATTAAGGGG
*
32863072 AACAAAAATAAATAAAT
1 AACAAAAAGAAATAAAT
32863089 AACAAAAAGAAATAAAT
1 AACAAAAAGAAATAAAT
32863106 AA
1 AA
32863108 AGAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.78, C:0.06, G:0.03, T:0.14
Consensus pattern (17 bp):
AACAAAAAGAAATAAAT
Found at i:32864228 original size:14 final size:14
Alignment explanation
Indices: 32864206--32864248 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
32864196 AAAAAAATAC
*
32864206 AAACTAAGAAAGAA
1 AAACAAAGAAAGAA
32864220 AAACAAAGAAAGAA
1 AAACAAAGAAAGAA
**
32864234 AAGGAAAG-AAGAA
1 AAACAAAGAAAGAA
32864247 AA
1 AA
32864249 GAAGGAGACG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 7 0.27
14 19 0.73
ACGTcount: A:0.74, C:0.05, G:0.19, T:0.02
Consensus pattern (14 bp):
AAACAAAGAAAGAA
Found at i:32864245 original size:13 final size:14
Alignment explanation
Indices: 32864211--32864249 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
32864201 AATACAAACT
**
32864211 AAGAAAGAAAAACA
1 AAGAAAGAAAAGGA
32864225 AAGAAAGAAAAGGA
1 AAGAAAGAAAAGGA
32864239 AAG-AAGAAAAG
1 AAGAAAGAAAAG
32864250 AAGGAGACGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (14 bp):
AAGAAAGAAAAGGA
Found at i:32864492 original size:12 final size:12
Alignment explanation
Indices: 32864475--32864499 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32864465 GAAAAAGGAT
32864475 TAAATTGTAAAA
1 TAAATTGTAAAA
32864487 TAAATTGTAAAA
1 TAAATTGTAAAA
32864499 T
1 T
32864500 TTGAGTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (12 bp):
TAAATTGTAAAA
Found at i:32866204 original size:21 final size:21
Alignment explanation
Indices: 32866180--32866219 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32866170 CTAGGATGAT
*
32866180 TGTTTTAGCATGTTTTGAATG
1 TGTTTGAGCATGTTTTGAATG
* *
32866201 TGTTTGATCGTGTTTTGAA
1 TGTTTGAGCATGTTTTGAA
32866220 CAGGTTAAAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.05, G:0.25, T:0.53
Consensus pattern (21 bp):
TGTTTGAGCATGTTTTGAATG
Found at i:32872461 original size:21 final size:21
Alignment explanation
Indices: 32872435--32872476 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
32872425 ATTTTCCCTT
32872435 TCTCCTTTCTCTTCTAAGCAA
1 TCTCCTTTCTCTTCTAAGCAA
32872456 TCTCCTTTCTCTTCTAAGCAA
1 TCTCCTTTCTCTTCTAAGCAA
32872477 ATTTTCTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.05, T:0.43
Consensus pattern (21 bp):
TCTCCTTTCTCTTCTAAGCAA
Found at i:32873036 original size:15 final size:13
Alignment explanation
Indices: 32873010--32873035 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32873000 TTAGGTTAGG
32873010 AGTGAGAGATATA
1 AGTGAGAGATATA
32873023 AGTGAGAGATATA
1 AGTGAGAGATATA
32873036 TGAATAATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (13 bp):
AGTGAGAGATATA
Done.