Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 116 of 221
Found at i:35664886 original size:20 final size:21
Alignment explanation
Indices: 35664844--35664888 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
35664834 TGCTAAAGTT
**
35664844 AAAA-AAATCATAAATATCCA
1 AAAATAAATCATAAATATAAA
35664864 AAAATAAAT-ATAAATATAAA
1 AAAATAAATCATAAATATAAA
35664884 AAAAT
1 AAAAT
35664889 TAAAGAAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAATAAATCATAAATATAAA
Found at i:35690177 original size:36 final size:37
Alignment explanation
Indices: 35690130--35690207 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
35690120 TTATTATGAA
* * *
35690130 GTCTTACCCGGACATAATCTTCACACGAAGTTATC-G
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
*
35690166 GTCTTACCCGGACAAAATCCTCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
35690203 GTCTT
1 GTCTT
35690208 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 31 0.84
37 6 0.16
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
Found at i:35690320 original size:47 final size:47
Alignment explanation
Indices: 35690250--35690582 Score: 490
Period size: 47 Copynumber: 7.0 Consensus size: 47
35690240 CTTCGGGACT
* * * * *
35690250 TATCACATTTATACACTTTCACATCCATCACGTTGG-CACT-GGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * * *
35690295 TGTCACATATATATACACTTCCACATTCATCACCTCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
35690344 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
35690391 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
35690438 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
35690485 TATCACATATTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCAC-----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
35690537 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
35690583 TTACTATCAT
Statistics
Matches: 265, Mismatches: 14, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
45 5 0.02
47 202 0.76
48 3 0.01
49 9 0.03
52 46 0.17
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:35698692 original size:39 final size:39
Alignment explanation
Indices: 35698638--35698763 Score: 155
Period size: 39 Copynumber: 3.2 Consensus size: 39
35698628 GCGTGCGACA
* *
35698638 CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGT
1 CCGCAGGCTATGTGCTGGAATTATATCCGGACGTAAGGT
*
35698677 CCGCAGGCTATGTGCTGGAATTATATCTGGACGTAAGGT
1 CCGCAGGCTATGTGCTGGAATTATATCCGGACGTAAGGT
* * * * * *
35698716 CCGCAGGCTACGTGCTAGAAATATGTCCGGGC-TAAAGT
1 CCGCAGGCTATGTGCTGGAATTATATCCGGACGTAAGGT
35698754 CCCGCAGGCT
1 -CCGCAGGCT
35698764 TCGAGCTGGT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
38 5 0.07
39 71 0.93
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (39 bp):
CCGCAGGCTATGTGCTGGAATTATATCCGGACGTAAGGT
Found at i:35700859 original size:126 final size:128
Alignment explanation
Indices: 35700655--35701010 Score: 537
Period size: 130 Copynumber: 2.8 Consensus size: 128
35700645 ATAAAATTTT
* *
35700655 TTGGCTAATTTAAAAGAACATTTATTGTATTAAAATT--AAAA--AAAGTACAATTAATATATTA
1 TTGGCTAATTTAAAAGAACATTTATT-TAATAAAATTAAAAAAGTAAAGTACAATTAAAATATTA
* * *
35700716 AAAACAAATTTTATTTTATTAATTAAAACTATATAAGAA-TAAATATAAAAATAAT-AAAAATA
65 AAAACAACTTTTATTTTATTAATTGAAACTATATAAAAATTAAATATAAAAATAATAAAAAATA
* *
35700778 TTGGCTAATTTAAAAGAATATTTATTTAATAAAATTAAAAAAGTAAAGTACAATTAAAATGTTAA
1 TTGGCTAATTTAAAAGAACATTTATTTAATAAAATTAAAAAAGTAAAGTACAATTAAAATATTAA
*
35700843 AAATAACTTTTATTTTATTAATTGAAACTATATAAAAATTAAATATAAAAATAATAAAAAATA
66 AAACAACTTTTATTTTATTAATTGAAACTATATAAAAATTAAATATAAAAATAATAAAAAATA
* *
35700906 TTGCCTAATTTAAAAAAACATTTATTTTAATAAAATTTAAAAAAGTAAAGTACAATTAAAATATT
1 TTGGCTAATTTAAAAGAACATTTA-TTTAATAAAA-TTAAAAAAGTAAAGTACAATTAAAATATT
35700971 AAAAACAACTTTTATTTTATT-ATATGAAACTATATAAAAA
64 AAAAACAACTTTTATTTTATTAAT-TGAAACTATATAAAAA
35701011 AAGTTTCTAC
Statistics
Matches: 211, Mismatches: 13, Indels: 11
0.90 0.06 0.05
Matches are distributed among these distances:
122 9 0.04
123 25 0.12
124 4 0.02
126 53 0.25
127 16 0.08
128 28 0.13
129 12 0.06
130 64 0.30
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.36
Consensus pattern (128 bp):
TTGGCTAATTTAAAAGAACATTTATTTAATAAAATTAAAAAAGTAAAGTACAATTAAAATATTAA
AAACAACTTTTATTTTATTAATTGAAACTATATAAAAATTAAATATAAAAATAATAAAAAATA
Found at i:35703284 original size:21 final size:22
Alignment explanation
Indices: 35703244--35703285 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
35703234 GGTTTTTTGC
**
35703244 AAAAATTAGAGAGAGCTTTGAT
1 AAAAATTAGAGAGAAATTTGAT
35703266 AAAAATT-GAGAGAAATTTGA
1 AAAAATTAGAGAGAAATTTGA
35703286 GAGAATTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.50, C:0.02, G:0.21, T:0.26
Consensus pattern (22 bp):
AAAAATTAGAGAGAAATTTGAT
Found at i:35703298 original size:9 final size:10
Alignment explanation
Indices: 35703271--35703321 Score: 66
Period size: 11 Copynumber: 4.7 Consensus size: 10
35703261 TTGATAAAAA
35703271 TTGAGAGAAAT
1 TTGAGAG-AAT
35703282 TTGAGAGAAT
1 TTGAGAGAAT
35703292 TTGGAGAGAAT
1 TT-GAGAGAAT
35703303 TTAGAGAGAAT
1 TT-GAGAGAAT
35703314 TGTGAGAG
1 T-TGAGAG
35703322 GACTATTGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
10 5 0.14
11 31 0.84
12 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.27
Consensus pattern (10 bp):
TTGAGAGAAT
Found at i:35703708 original size:27 final size:27
Alignment explanation
Indices: 35703678--35703734 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
35703668 AAGTAGAAAT
35703678 ATTTGAAATTATTCATTATATAACTAA
1 ATTTGAAATTATTCATTATATAACTAA
35703705 ATTTGAAATTATTCATTATATAACTAA
1 ATTTGAAATTATTCATTATATAACTAA
35703732 ATT
1 ATT
35703735 GTCATTAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.46
Consensus pattern (27 bp):
ATTTGAAATTATTCATTATATAACTAA
Found at i:35709406 original size:27 final size:27
Alignment explanation
Indices: 35709374--35709602 Score: 257
Period size: 27 Copynumber: 8.5 Consensus size: 27
35709364 TATCGAGTCT
* * *
35709374 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAATCAAATC
*
35709401 GTACACTTAGTGCTACATAATCAAATC
1 GCACACTTAGTGCTACATAATCAAATC
* *
35709428 GCACACTTAGTGCTACGTAGTCAAATC
1 GCACACTTAGTGCTACATAATCAAATC
*
35709455 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAATCAAATC
*
35709482 GCACAC-TAGTGCTACATACT-AAACTC
1 GCACACTTAGTGCTACATAATCAAA-TC
** ** *
35709508 GCACACTTAGTGCCGCATGGTCAACTC
1 GCACACTTAGTGCTACATAATCAAATC
* **
35709535 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAATCAAATC
* *
35709562 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAATCAAATC
35709589 GCACACTTAGTGCT
1 GCACACTTAGTGCT
35709603 GTACAATTTA
Statistics
Matches: 173, Mismatches: 24, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
25 3 0.02
26 20 0.12
27 147 0.85
28 3 0.02
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAATCAAATC
Found at i:35709568 original size:107 final size:107
Alignment explanation
Indices: 35709374--35709602 Score: 280
Period size: 107 Copynumber: 2.1 Consensus size: 107
35709364 TATCGAGTCT
* * * *
35709374 GCACACTCAGTGCTATATAATCAACTCGTACACTTAGTGCTACATAATCAAATCGCACACTTAGT
1 GCACACT-AGTGCTACATAATAAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGT
* * *
35709439 GCTACGTAGTCAAATCGCACACTTAGTGCTACGTAATCAAATC
65 GCTACATAGTCAAATCGCACACTTAGTGCAACATAATCAAATC
* * ** *
35709482 GCACACTAGTGCTACATACTAAACTCGCACACTTAGTGCCGCATGGTCAACTCGCACACTTAGTG
1 GCACACTAGTGCTACATAATAAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTG
* ** *
35709547 C-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATC
66 CTA-CATAGTCAAATCGCACACTTAGTGCAACATAATCAAATC
35709589 GCACACTTAGTGCT
1 GCACAC-TAGTGCT
35709603 GTACAATTTA
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
106 1 0.01
107 88 0.85
108 14 0.14
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (107 bp):
GCACACTAGTGCTACATAATAAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTG
CTACATAGTCAAATCGCACACTTAGTGCAACATAATCAAATC
Found at i:35717291 original size:27 final size:27
Alignment explanation
Indices: 35717261--35717410 Score: 207
Period size: 26 Copynumber: 5.6 Consensus size: 27
35717251 ATATTGAGTC
* * *
35717261 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
35717288 CGCACACTTAGTGCTAC-TAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
35717314 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
35717342 CGCACACTTAGTGCTAGCATAGTCAAACT
1 CGCACACTTAGTGCTA-CATAGTC-AACT
35717371 CGCACACTTAGTGC-ACATAGTCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
35717396 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35717411 GTACAATTAA
Statistics
Matches: 114, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
25 15 0.13
26 27 0.24
27 26 0.23
28 20 0.18
29 26 0.23
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:35717372 original size:29 final size:28
Alignment explanation
Indices: 35717261--35717410 Score: 213
Period size: 27 Copynumber: 5.5 Consensus size: 28
35717251 ATATTGAGTC
* * *
35717261 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAGTCAAACT
*
35717288 CGCACACTTAGTGCTAC-TAATCAAA-T
1 CGCACACTTAGTGCTACATAGTCAAACT
35717314 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACT
35717342 CGCACACTTAGTGCTAGCATAGTCAAACT
1 CGCACACTTAGTGCTA-CATAGTCAAACT
35717371 CGCACACTTAGTGC-ACATAGTC-AA-T
1 CGCACACTTAGTGCTACATAGTCAAACT
35717396 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35717411 GTACAATTAA
Statistics
Matches: 115, Mismatches: 3, Indels: 11
0.89 0.02 0.09
Matches are distributed among these distances:
25 15 0.13
26 25 0.22
27 31 0.27
28 18 0.16
29 26 0.23
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAGTCAAACT
Found at i:35717428 original size:82 final size:81
Alignment explanation
Indices: 35717260--35717410 Score: 216
Period size: 82 Copynumber: 1.9 Consensus size: 81
35717250 TATATTGAGT
*
35717260 CCGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACTAATCAAATCGCACACTTAG
1 CCGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACTAATCAAATCGCACACTTAG
35717325 TGCTACATAGTCAAAC
66 TGCTACATAGTCAAAC
* * * *
35717341 TCGCACACTTAGTGCTAGCATAGTCAAACTCGCACACTTAGTGC-ACATAGTC-AATCGCACACT
1 CCGCACACTCAGTGCTA-CATAATC-AACTCGCACACTTAGTGCTAC-TAATCAAATCGCACACT
35717404 TAGTGCT
63 TAGTGCT
35717411 GTACAATTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
81 15 0.24
82 25 0.40
83 22 0.35
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (81 bp):
CCGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACTAATCAAATCGCACACTTAG
TGCTACATAGTCAAAC
Found at i:35725238 original size:28 final size:27
Alignment explanation
Indices: 35725175--35725354 Score: 279
Period size: 28 Copynumber: 6.6 Consensus size: 27
35725165 ATATTAAGTC
* * *
35725175 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
35725202 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
35725230 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
35725258 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
35725285 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
35725313 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
35725340 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35725355 GCACAATTTA
Statistics
Matches: 145, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
27 65 0.45
28 80 0.55
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:35725288 original size:55 final size:55
Alignment explanation
Indices: 35725175--35725354 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
35725165 ATATTAAGTC
* * * * *
35725175 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATT
35725230 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
35725285 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
35725340 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35725355 GCACAATTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 93 0.78
56 26 0.22
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAATT
Found at i:35725314 original size:83 final size:82
Alignment explanation
Indices: 35725175--35725354 Score: 297
Period size: 83 Copynumber: 2.2 Consensus size: 82
35725165 ATATTAAGTC
* *
35725175 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
35725240 GTGCTACATAGTCAAACT
66 GTGCTACATAGTC-AACT
* * *
35725258 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
*
35725323 GTGCTACATAGTCAATT
66 GTGCTACATAGTCAACT
35725340 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
35725355 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 18 0.20
83 73 0.80
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:35734766 original size:62 final size:62
Alignment explanation
Indices: 35734677--35734796 Score: 161
Period size: 62 Copynumber: 1.9 Consensus size: 62
35734667 AAGTGATTAC
** * * *
35734677 TTAATATTAAATTAAATTTAATGTTTATCTTG-TAGATAAACATTCTATTATTTTAATAAAAT
1 TTAATATTAAATTAAATCCAATATTTATCTTGATA-ATAAACATTATATTAATTTAATAAAAT
* *
35734739 TTAATATTAAATTTAATCCAATATTTATCTTGATAATAAATATTATATTAATTTAATA
1 TTAATATTAAATTAAATCCAATATTTATCTTGATAATAAACATTATATTAATTTAATA
35734797 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
62 48 0.96
63 2 0.04
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.48
Consensus pattern (62 bp):
TTAATATTAAATTAAATCCAATATTTATCTTGATAATAAACATTATATTAATTTAATAAAAT
Found at i:35735742 original size:19 final size:19
Alignment explanation
Indices: 35735706--35735743 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
35735696 TATATATCTG
*
35735706 TTTTATAATTTTTTATATT
1 TTTTATAATTTTTAATATT
35735725 TTTTAT-ATTATTTAATATT
1 TTTTATAATT-TTTAATATT
35735744 ATAATTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTATAATTTTTAATATT
Found at i:35745557 original size:21 final size:23
Alignment explanation
Indices: 35745518--35745560 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 23
35745508 TTTTGAGATT
35745518 TTGATATTTTATAATTTTTTATA
1 TTGATATTTTATAATTTTTTATA
35745541 TTGA-ATTTTAT-ATTTTTTAT
1 TTGATATTTTATAATTTTTTAT
35745561 TAAATAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 7 0.35
23 4 0.20
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (23 bp):
TTGATATTTTATAATTTTTTATA
Found at i:35745569 original size:22 final size:22
Alignment explanation
Indices: 35745523--35745581 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 22
35745513 AGATTTTGAT
*
35745523 ATTTTATAATTTTTTA-TATTGA
1 ATTTTAT-ATTTTTTATTAATGA
35745545 ATTTTATATTTTTTATTAAAT-A
1 ATTTTATATTTTTTATT-AATGA
*
35745567 ATTTT-GATTTTTTAT
1 ATTTTATATTTTTTAT
35745582 AATTTTATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
21 17 0.52
22 14 0.42
23 2 0.06
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (22 bp):
ATTTTATATTTTTTATTAATGA
Found at i:35746775 original size:50 final size:50
Alignment explanation
Indices: 35746718--35746850 Score: 133
Period size: 50 Copynumber: 2.7 Consensus size: 50
35746708 TTAAACATAA
* *
35746718 TTAACATATAAGATGCATAAATGCATGGCTTAA-TTAAAATGCAAACTTAT
1 TTAACATATAAGATGCAT-AATGCATGACATAATTTAAAATGCAAACTTAT
* * * * * *
35746768 TTAACATATGAGTTTCATAATGCATGACATAATTTAATATGCAAACTGAA
1 TTAACATATAAGATGCATAATGCATGACATAATTTAAAATGCAAACTTAT
* * * * *
35746818 TTAATATATGAGTTACATAATGCATGAAATAAT
1 TTAACATATAAGATGCATAATGCATGACATAAT
35746851 CAAATGCAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 12 0.17
50 59 0.83
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.34
Consensus pattern (50 bp):
TTAACATATAAGATGCATAATGCATGACATAATTTAAAATGCAAACTTAT
Found at i:35746901 original size:32 final size:33
Alignment explanation
Indices: 35746860--35746923 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
35746850 TCAAATGCAA
**
35746860 AACATATAATGTAAAACATAA-TTAAAGATGCT
1 AACATATAATACAAAACATAATTTAAAGATGCT
35746892 AACATATAATACAAAACATAATTTAAAGATGC
1 AACATATAATACAAAACATAATTTAAAGATGC
35746924 AAACTTATGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 19 0.66
33 10 0.34
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.27
Consensus pattern (33 bp):
AACATATAATACAAAACATAATTTAAAGATGCT
Found at i:35747788 original size:13 final size:12
Alignment explanation
Indices: 35747758--35747800 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
35747748 ATTTTTATAT
35747758 AATAAATTATTC
1 AATAAATTATTC
*
35747770 ATATAATTTACTTC
1 A-ATAAATTA-TTC
35747784 AATAAAATTATTC
1 AAT-AAATTATTC
35747797 AATA
1 AATA
35747801 TTAAAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 2 0.08
13 15 0.58
14 9 0.35
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (12 bp):
AATAAATTATTC
Found at i:35756396 original size:19 final size:20
Alignment explanation
Indices: 35756372--35756425 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
35756362 AATACCAACT
*
35756372 TAAAAATATCGATACT-TTA
1 TAAAAATATCGATACTCGTA
*
35756391 TAAAAATATCGATACTCGTG
1 TAAAAATATCGATACTCGTA
*
35756411 GAAAAATATCGATAC
1 TAAAAATATCGATAC
35756426 CACTGGGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (20 bp):
TAAAAATATCGATACTCGTA
Found at i:35758564 original size:20 final size:20
Alignment explanation
Indices: 35758519--35758577 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
35758509 AACAATTTTA
*
35758519 AATCAAGTGC-AAATGATTTT
1 AATCAAGT-CAAAATGATTTC
*
35758539 AGTCAAGTCAAAATGATTTC
1 AATCAAGTCAAAATGATTTC
* *
35758559 AATCAAGTTAAAATAATTT
1 AATCAAGTCAAAATGATTT
35758578 TAAAATGATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (20 bp):
AATCAAGTCAAAATGATTTC
Found at i:35763013 original size:16 final size:16
Alignment explanation
Indices: 35762980--35763014 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
35762970 AAGATATTAG
* *
35762980 AAATAAAAAATTATAT
1 AAATAAAAAATAAAAT
35762996 AAATAAAAAATAAAAT
1 AAATAAAAAATAAAAT
35763012 AAA
1 AAA
35763015 ATTAGAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAATAAAAAATAAAAT
Found at i:35766091 original size:21 final size:21
Alignment explanation
Indices: 35766066--35766106 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
35766056 TGTTAATACA
*
35766066 AATTTCAATTTCTTTTCTAAT
1 AATTTCAATCTCTTTTCTAAT
*
35766087 AATTTCAATCTGTTTTCTAA
1 AATTTCAATCTCTTTTCTAA
35766107 ATTCCTAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.15, G:0.02, T:0.54
Consensus pattern (21 bp):
AATTTCAATCTCTTTTCTAAT
Found at i:35767570 original size:27 final size:27
Alignment explanation
Indices: 35767537--35767603 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
35767527 CCCAATTTTA
* *
35767537 CTTCAGTAAATTTTTGACGATTTTACC
1 CTTCAGTAAAATTTTGAAGATTTTACC
35767564 CTTCAGTAAAATTTTGAAGATTTTACTC
1 CTTCAGTAAAATTTTGAAGATTTTAC-C
35767592 C-T-AGTAAAATTT
1 CTTCAGTAAAATTT
35767604 CGAGAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 10 0.27
27 25 0.68
28 2 0.05
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.43
Consensus pattern (27 bp):
CTTCAGTAAAATTTTGAAGATTTTACC
Found at i:35767758 original size:6 final size:6
Alignment explanation
Indices: 35767747--35767773 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
35767737 GGATTGTAAT
35767747 TTTCCA TTTCCA TTTCCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTT
35767774 TTGGAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.30, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTCCA
Found at i:35772616 original size:15 final size:16
Alignment explanation
Indices: 35772590--35772620 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
35772580 CAAAATTTAC
35772590 AACTTATCAATACTTA
1 AACTTATCAATACTTA
35772606 AACTT-TCAATACTTA
1 AACTTATCAATACTTA
35772621 TTTTTTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (16 bp):
AACTTATCAATACTTA
Found at i:35772652 original size:15 final size:14
Alignment explanation
Indices: 35772616--35772655 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
35772606 AACTTTCAAT
**
35772616 ACTTATTTTTTTAC
1 ACTTATTTTTCGAC
35772630 ACTTATTTTTCGAC
1 ACTTATTTTTCGAC
35772644 ACTTAATTTTTC
1 ACTT-ATTTTTC
35772656 AGTTTATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.23, C:0.17, G:0.03, T:0.57
Consensus pattern (14 bp):
ACTTATTTTTCGAC
Found at i:35773074 original size:43 final size:43
Alignment explanation
Indices: 35773016--35773118 Score: 152
Period size: 43 Copynumber: 2.4 Consensus size: 43
35773006 GTTTATAGAA
* *
35773016 ACAAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGGTTTCTCC
1 ACAAAA-GCCGCTAAAGGTCATGTTCCTTAGCGGCAGTTTCTCC
* * *
35773060 ACAAATGCTGCTAAAGGTCATGTTCCTTAGCGGCAGTTTTTCC
1 ACAAAAGCCGCTAAAGGTCATGTTCCTTAGCGGCAGTTTCTCC
35773103 ACAAAAGCCGCTAAAG
1 ACAAAAGCCGCTAAAG
35773119 AACATGGCTT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
43 47 0.90
44 5 0.10
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (43 bp):
ACAAAAGCCGCTAAAGGTCATGTTCCTTAGCGGCAGTTTCTCC
Found at i:35773133 original size:43 final size:42
Alignment explanation
Indices: 35773016--35773162 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 42
35773006 GTTTATAGAA
** * * *
35773016 ACAAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGGTTTCTCC
1 ACAAAA-GCCGCTAAAGAACATGCT-TTTAGCGGCAGTTTTTCC
* * **
35773060 ACAAATGCTGCTAAAGGTCATG-TTCCTTAGCGGCAGTTTTTCC
1 ACAAAAGCCGCTAAAGAACATGCTT--TTAGCGGCAGTTTTTCC
*
35773103 ACAAAAGCCGCTAAAGAACATGGCTTTTAGC-G-ACTTTTTCCC
1 ACAAAAGCCGCTAAAGAACAT-GCTTTTAGCGGCAGTTTTT-CC
* *
35773145 ACAAACGCCGCTATAGAA
1 ACAAAAGCCGCTAAAGAA
35773163 TTGGACTTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
41 7 0.08
42 20 0.23
43 52 0.60
44 6 0.07
45 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (42 bp):
ACAAAAGCCGCTAAAGAACATGCTTTTAGCGGCAGTTTTTCC
Found at i:35773643 original size:87 final size:87
Alignment explanation
Indices: 35773549--35773725 Score: 275
Period size: 87 Copynumber: 2.0 Consensus size: 87
35773539 TTCTGCTCTG
* *
35773549 CTCTGCTTCCCTTGCTGCAGCCTCTGCTTCTCTCGA-TGCCGCATCTAATTTAAGTTGTAGCTGG
1 CTCTGCTTCCCTCGCTGCAGCCTCTGCTTCCCTC-ACTGCCGCATCTAATTTAAGTTGTAGCTGG
*
35773613 AGTTCTTCATATTTCTTTTGAAC
65 AGTTCTTCATATTTCCTTTGAAC
* * **
35773636 CTCTGCTTCTCTCGCTGCAGCCTCTGCTTCCCTCACTGCCGCCTCTGCTTTAAGTTGTAGCTGGA
1 CTCTGCTTCCCTCGCTGCAGCCTCTGCTTCCCTCACTGCCGCATCTAATTTAAGTTGTAGCTGGA
35773701 GTTCTTCATATTTCCTTTGAAC
66 GTTCTTCATATTTCCTTTGAAC
35773723 CTC
1 CTC
35773726 AACTGTGGTC
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
86 1 0.01
87 81 0.99
ACGTcount: A:0.13, C:0.31, G:0.17, T:0.39
Consensus pattern (87 bp):
CTCTGCTTCCCTCGCTGCAGCCTCTGCTTCCCTCACTGCCGCATCTAATTTAAGTTGTAGCTGGA
GTTCTTCATATTTCCTTTGAAC
Found at i:35773659 original size:21 final size:21
Alignment explanation
Indices: 35773635--35773685 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
35773625 TTCTTTTGAA
* *
35773635 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCCCTCACTGCAG
*
35773656 CCTCTGCTTCCCTCACTGCCG
1 CCTCTGCTTCCCTCACTGCAG
35773677 CCTCTGCTT
1 CCTCTGCTT
35773686 TAAGTTGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.04, C:0.47, G:0.16, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCCCTCACTGCAG
Found at i:35777370 original size:31 final size:31
Alignment explanation
Indices: 35777277--35777372 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
35777267 GGCAAATTAC
*
35777277 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
35777308 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
35777340 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
35777371 AA
1 AA
35777373 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:35783542 original size:31 final size:31
Alignment explanation
Indices: 35783449--35783544 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
35783439 GGCAAATTAC
*
35783449 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
35783480 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
35783512 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
35783543 AA
1 AA
35783545 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:35786181 original size:16 final size:15
Alignment explanation
Indices: 35786162--35786365 Score: 77
Period size: 16 Copynumber: 13.1 Consensus size: 15
35786152 TATTTGGTAA
35786162 ATTATGTAGGTTATGT
1 ATTATGTA-GTTATGT
*
35786178 ATTATATAAGTTATGT
1 ATTATGT-AGTTATGT
*
35786194 AAGTTGTGTA-TTATGTT
1 -A-TTATGTAGTTATG-T
* *
35786211 AGTTGTGTA-CTATGT
1 A-TTATGTAGTTATGT
*
35786226 AAGTTATGTAAGTTAGGT
1 -A-TTATGT-AGTTATGT
*
35786244 ATTATTTATGTTATGT
1 ATTATGTA-GTTATGT
35786260 ATTATGTATGTTATGT
1 ATTATGTA-GTTATGT
* *
35786276 ATAATAT-TAATTAAG-
1 AT--TATGTAGTTATGT
*
35786291 -TTATGTA--TA-AT
1 ATTATGTAGTTATGT
*
35786302 ATTAAT-TAAGTTGTGT
1 ATT-ATGT-AGTTATGT
*
35786318 ATAATGTAAGTTATGT
1 ATTATGT-AGTTATGT
*
35786334 ATTATGTA-TTATGC
1 ATTATGTAGTTATGT
35786348 ATTATGTATGTTATGT
1 ATTATGTA-GTTATGT
35786364 AT
1 AT
35786366 AATATTAATT
Statistics
Matches: 147, Mismatches: 20, Indels: 42
0.70 0.10 0.20
Matches are distributed among these distances:
11 2 0.01
12 6 0.04
13 5 0.03
14 14 0.10
15 6 0.04
16 95 0.65
17 8 0.05
18 11 0.07
ACGTcount: A:0.31, C:0.01, G:0.18, T:0.50
Consensus pattern (15 bp):
ATTATGTAGTTATGT
Found at i:35786207 original size:41 final size:40
Alignment explanation
Indices: 35786162--35786276 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 40
35786152 TATTTGGTAA
*
35786162 ATTATGTAGGTTATGTATTATATAAGTTATGTAAGTT-GTGT
1 ATTATGTA-GTTATGTATTATGTAAGTTATGTAAGTTAG-GT
* *
35786203 ATTATGTTAGTTGTGTACTATGTAAGTTATGTAAGTTAGGT
1 ATTATG-TAGTTATGTATTATGTAAGTTATGTAAGTTAGGT
* *
35786244 ATTATTTATGTTATGTATTATGTATGTTATGTA
1 ATTATGTA-GTTATGTATTATGTAAGTTATGTA
35786277 TAATATTAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
40 2 0.03
41 59 0.92
42 3 0.05
ACGTcount: A:0.28, C:0.01, G:0.21, T:0.50
Consensus pattern (40 bp):
ATTATGTAGTTATGTATTATGTAAGTTATGTAAGTTAGGT
Found at i:35786277 original size:9 final size:9
Alignment explanation
Indices: 35786221--35786277 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 9
35786211 AGTTGTGTAC
*
35786221 TATGTAAGT
1 TATGTATGT
*
35786230 TATGTAAGT
1 TATGTATGT
*
35786239 TAGGTA--T
1 TATGTATGT
*
35786246 TATTTATGT
1 TATGTATGT
35786255 TATGTA--T
1 TATGTATGT
35786262 TATGTATGT
1 TATGTATGT
35786271 TATGTAT
1 TATGTAT
35786278 AATATTAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
7 12 0.30
9 28 0.70
ACGTcount: A:0.28, C:0.00, G:0.19, T:0.53
Consensus pattern (9 bp):
TATGTATGT
Found at i:35786283 original size:21 final size:21
Alignment explanation
Indices: 35786259--35786463 Score: 110
Period size: 21 Copynumber: 9.8 Consensus size: 21
35786249 TTATGTTATG
*
35786259 TATTATGTATGTTATGTATAA
1 TATTATGTAAGTTATGTATAA
35786280 TATTAAT-TAAGTTATGTATAA
1 TATT-ATGTAAGTTATGTATAA
*
35786301 TATTAAT-TAAGTTGTGTATAA
1 TATT-ATGTAAGTTATGTATAA
*
35786322 TGTAAGTTATGT-A-TTATGTATTA
1 --T-A-TTATGTAAGTTATGTATAA
*
35786345 TGCATTATGTATGTTATGTATAA
1 T--ATTATGTAAGTTATGTATAA
* * *
35786368 TATTAAT-TAAGTTGTGAATTATG
1 TATT-ATGTAAGTTATGTA-TA-A
* *
35786391 TATTATGTATGTTATGTATAT
1 TATTATGTAAGTTATGTATAA
*
35786412 TATTAAT-TAAG-T-TG--T-G
1 TATT-ATGTAAGTTATGTATAA
**
35786428 TATTATGTAAGTTAT-TATGT
1 TATTATGTAAGTTATGTATAA
35786448 TATTATGTAAGTTATG
1 TATTATGTAAGTTATG
35786464 CAAGTTTATA
Statistics
Matches: 145, Mismatches: 18, Indels: 42
0.71 0.09 0.20
Matches are distributed among these distances:
15 2 0.01
16 8 0.06
17 2 0.01
18 1 0.01
19 3 0.02
20 16 0.11
21 62 0.43
22 13 0.09
23 31 0.21
24 4 0.03
25 3 0.02
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (21 bp):
TATTATGTAAGTTATGTATAA
Found at i:35786325 original size:58 final size:58
Alignment explanation
Indices: 35786243--35786430 Score: 160
Period size: 58 Copynumber: 3.0 Consensus size: 58
35786233 GTAAGTTAGG
* * * *
35786243 TATTATTTATGTTATGTATTATGTATGTTATGTATAATATTAATTAAGTTATGTATAA
1 TATTAATTAAGTTGTGTATAATGTATGTTATGTATAATATTAATTAAGTTATGTATAA
* *
35786301 TATTAATTAAGTTGTGTATAATGTAAGTTATGTATTATGTATTATGCATTATGTATGTTATGTAT
1 TATTAATTAAGTTGTGTATAATGTATGTTATGTA-TA-ATATTA---ATTA---A-GTTATGTAT
35786366 AA
57 AA
* *
35786368 TATTAATTAAGTTGTGAATTATGTATTATGTATGTTATGTATATTATTAATTAAGTTGTGTAT
1 TATTAATTAAGTTGTG---TA--TA--ATGTATGTTATGTATAATATTAATTAAGTTATGTAT
35786431 TATGTAAGTT
Statistics
Matches: 105, Mismatches: 9, Indels: 25
0.76 0.06 0.18
Matches are distributed among these distances:
58 29 0.28
59 2 0.02
60 5 0.05
63 4 0.04
65 8 0.08
66 2 0.02
67 27 0.26
69 4 0.04
70 2 0.02
72 7 0.07
73 2 0.02
74 13 0.12
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.52
Consensus pattern (58 bp):
TATTAATTAAGTTGTGTATAATGTATGTTATGTATAATATTAATTAAGTTATGTATAA
Found at i:35786396 original size:44 final size:44
Alignment explanation
Indices: 35786254--35786450 Score: 215
Period size: 44 Copynumber: 4.5 Consensus size: 44
35786244 ATTATTTATG
35786254 TTATGTATTATGTATGTTATGTATAATATTAATTAAGTTATGTA
1 TTATGTATTATGTATGTTATGTATAATATTAATTAAGTTATGTA
* * * * *
35786298 -TA-ATATTAAT-TAAGTTGTGTATAAT-GTAAGTTATGTATTATGTA
1 TTATGTATT-ATGTATGTTATGTATAATATTAA-TTAAG--TTATGTA
* * *
35786342 TTATGCATTATGTATGTTATGTATAATATTAATTAAGTTGTGAA
1 TTATGTATTATGTATGTTATGTATAATATTAATTAAGTTATGTA
* *
35786386 TTATGTATTATGTATGTTATGTATATTATTAATTAAGTTGTGTA
1 TTATGTATTATGTATGTTATGTATAATATTAATTAAGTTATGTA
35786430 TTATGTAAGTTAT-TATGTTAT
1 TTATGT-A-TTATGTATGTTAT
35786451 TATGTAAGTT
Statistics
Matches: 127, Mismatches: 16, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
41 3 0.02
42 21 0.17
43 4 0.03
44 59 0.46
45 13 0.10
46 24 0.19
47 3 0.02
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.51
Consensus pattern (44 bp):
TTATGTATTATGTATGTTATGTATAATATTAATTAAGTTATGTA
Found at i:35786740 original size:125 final size:122
Alignment explanation
Indices: 35786510--35786741 Score: 306
Period size: 125 Copynumber: 1.9 Consensus size: 122
35786500 TATGTATCTT
* * *
35786510 ATTTATAATTATTTTTAAAATTATAAAATTTATTACTAATAAATTTGAAATGTAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTACTAATAAAATTGAAATATAGGTTATATATC
* * **
35786575 CATACCATATATAGGGTGATATATTAAAAAAATAGGTTTTAATATTTAAAAATAAATAAA
66 CATACCATATATA--G-AAAATATTAAAAAAATAAATTTTAATATTTAAAAATAAATAAA
35786635 ATTTACAATTATTTTTAAAATTATAAAATTTATTGAC-AATAAAATTGAAATATAGGTTATATAT
1 ATTTACAATTATTTTTAAAATTATAAAATTTATT-ACTAATAAAATTGAAATATAGGTTATATAT
*
35786699 CCATACCATATATA-AAAATTTTAAATATATATATAAATTTTAA
65 CCATACCATATATAGAAAATATTAAA-A-A-A-ATAAATTTTAA
35786742 GTAATGTAAT
Statistics
Matches: 94, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
121 8 0.09
122 1 0.01
123 1 0.01
124 1 0.01
125 81 0.86
126 2 0.02
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.41
Consensus pattern (122 bp):
ATTTACAATTATTTTTAAAATTATAAAATTTATTACTAATAAAATTGAAATATAGGTTATATATC
CATACCATATATAGAAAATATTAAAAAAATAAATTTTAATATTTAAAAATAAATAAA
Found at i:35786760 original size:18 final size:18
Alignment explanation
Indices: 35786737--35786825 Score: 110
Period size: 18 Copynumber: 4.8 Consensus size: 18
35786727 ATATATAAAT
35786737 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
35786755 TTTAAGTAATGTAAGTTATAAA
1 TTTAAGTAATGTAA--TAT--A
*
35786777 TTTTAGTAA-GTAATATA
1 TTTAAGTAATGTAATATA
35786794 TTTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATA
*
35786812 TTTTAGTAA-GTAAT
1 TTTAAGTAATGTAAT
35786826 GTAAGTAATG
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
17 14 0.22
18 30 0.48
19 3 0.05
20 3 0.05
21 4 0.06
22 9 0.14
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (18 bp):
TTTAAGTAATGTAATATA
Found at i:35786796 original size:39 final size:37
Alignment explanation
Indices: 35786729--35786872 Score: 150
Period size: 39 Copynumber: 3.8 Consensus size: 37
35786719 TTAAATATAT
35786729 ATATAAATTTTAAGTAATGTAATATATTTAAGTAATGTA
1 ATATAAATTTT-AGTAA-GTAATATATTTAAGTAATGTA
35786768 AGTTATAAATTTTAGTAAGTAATATATTTAAGTAATGTA
1 A--TATAAATTTTAGTAAGTAATATATTTAAGTAATGTA
* ** *
35786807 ATAT--ATTTTAGTAAGTAATGTAAGTAATGTAATAT-
1 ATATAAATTTTAGTAAGTAATATATTTAA-GTAATGTA
* *
35786842 ATACTTAAATTTTAGTAAGTCATGTATTTAA
1 ATA--TAAATTTTAGTAAGTAATATATTTAA
35786873 CATTCTGTTA
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
35 23 0.25
36 6 0.07
37 4 0.04
39 43 0.47
40 5 0.05
41 10 0.11
ACGTcount: A:0.43, C:0.01, G:0.12, T:0.44
Consensus pattern (37 bp):
ATATAAATTTTAGTAAGTAATATATTTAAGTAATGTA
Found at i:35786825 original size:22 final size:22
Alignment explanation
Indices: 35786739--35786790 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
35786729 ATATAAATTT
*
35786739 TAAGTAATGTAATATATTTAAG
1 TAAGTAATGTAATAAATTTAAG
* *
35786761 TAATGTAA-GTTATAAATTTTAG
1 TAA-GTAATGTAATAAATTTAAG
35786783 TAAGTAAT
1 TAAGTAAT
35786791 ATATTTAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 4 0.16
22 17 0.68
23 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (22 bp):
TAAGTAATGTAATAAATTTAAG
Found at i:35786859 original size:57 final size:52
Alignment explanation
Indices: 35786720--35786872 Score: 130
Period size: 57 Copynumber: 2.8 Consensus size: 52
35786710 ATAAAAATTT
*
35786720 TAAATATATATATAAATTTTAAGTAATGTAATATATTTAAGTAATGTAAGTTA
1 TAAATATATAT-TAAATTTTAAGTAATGTAATATATTTAAGTAATGTAAGTAA
* *
35786773 TAAATTTTAGTAAGTAATATATTTAAGTAATGTAATATATTTTAGTAAGTAATGTAAGTAA
1 TAAA-TATA-T-ATTAA-AT-TTTAAGTAATGTAATATA--TT--TAAGTAATGTAAGTAA
* * *
35786834 TGTAATATATACTTAAATTTT-AGTAA-GTCATGTATTTAA
1 T-AAATATATA-TTAAATTTTAAGTAATGTAATATATTTAA
35786873 CATTCTGTTA
Statistics
Matches: 81, Mismatches: 8, Indels: 23
0.72 0.07 0.21
Matches are distributed among these distances:
52 3 0.04
53 4 0.05
54 5 0.06
55 4 0.05
56 9 0.11
57 23 0.28
58 3 0.04
59 5 0.06
60 4 0.05
61 19 0.23
62 2 0.02
ACGTcount: A:0.44, C:0.01, G:0.11, T:0.44
Consensus pattern (52 bp):
TAAATATATATTAAATTTTAAGTAATGTAATATATTTAAGTAATGTAAGTAA
Found at i:35787581 original size:12 final size:14
Alignment explanation
Indices: 35787558--35787590 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
35787548 CTTCAAAAAT
35787558 TAGAAGAACAAAC-
1 TAGAAGAACAAACA
35787571 TAGAA-AACAAACA
1 TAGAAGAACAAACA
35787584 TAGAAGA
1 TAGAAGA
35787591 TTGGTACTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 7 0.39
13 10 0.56
14 1 0.06
ACGTcount: A:0.64, C:0.12, G:0.15, T:0.09
Consensus pattern (14 bp):
TAGAAGAACAAACA
Found at i:35788870 original size:337 final size:336
Alignment explanation
Indices: 35788255--35789578 Score: 2078
Period size: 337 Copynumber: 3.9 Consensus size: 336
35788245 TAATAGAAAC
* * *
35788255 AGAAAATGCTAAGTTAAAATTGGTGTACATAAACGGCGTCGTTTAGCCAAAATTTTAAGACACTT
1 AGAAAATACTAAGTTAAAATTCGTGTACAGAAACGGCGTCGTTTAGCCAAAATTTTAAGACACTT
* * *
35788320 TTGCGGCGTTTCTAAAAAAACGCCGCTATTTCTTGTACATTTGCGGCGCTTCTAGAAAAGCGCCA
66 TTGCGGCGTTTCTAGAAAAACGCCGCTATTGCTTGTACATTTGCGGCGTTTCTA-AAAAGCGCCA
** *** *
35788385 CTAAAAAGCAAAGTTCTAATTTGAAACGGCGCTGTTTAATAAAGCTTTAATGCACATTTCTGGCA
130 CTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGCA
35788450 TTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATATT
195 TTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATATT
* * *
35788515 TTAAGTCACTTTTGCGGCGTTTCCTGAACAAAATGCCACTATAAATTAACAGAAATGGCGCCATT
260 TTAAGTCACTTTTGCGGCGTTTCCTGAACAAAACGCCACTATAAATTAACAGAAATGGCGTCGTT
35788580 GGATTAATATAG
325 GGATTAATATAG
* *
35788592 AGAAAATACTAAGTTAAAATTCGTGTACAAAAACGGTGTCGTTTAGCCAAAATTTTAAGACACTT
1 AGAAAATACTAAGTTAAAATTCGTGTACAGAAACGGCGTCGTTTAGCCAAAATTTTAAGACACTT
*
35788657 TTGCGGCGTTTCTAGAAAAACGCCGCTATTGCTTGTACATTTGCCGG-GTTTCTTAAAAATCGCC
66 TTGCGGCGTTTCTAGAAAAACGCCGCTATTGCTTGTACATTTG-CGGCGTTTC-TAAAAAGCGCC
* *
35788721 ACTAAAAATTAAAGTTCTAATCCAAAACGGTGCCGTTTAATAAAGCTTTAATGCACATTTTTGGC
129 ACTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGC
** * *
35788786 GCTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACAGCGTCGTTTACCCAATAT
194 ATTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATAT
* * * *
35788851 TTTAAGTCGCTTTTGCGGCGTTTCCTGAACAAAACCCCACTATAAATTAACAGAAACGGTGTCGT
259 TTTAAGTCACTTTTGCGGCGTTTCCTGAACAAAACGCCACTATAAATTAACAGAAATGGCGTCGT
35788916 TGGATTAATATAG
324 TGGATTAATATAG
* * **
35788929 AGAAAATACTATGTTAAAATTTGTGTACAGAAACGATGTCGTTTAGCCAAAATTTTAAGACACTT
1 AGAAAATACTAAGTTAAAATTCGTGTACAGAAACGGCGTCGTTTAGCCAAAATTTTAAGACACTT
* *
35788994 TTGCGGCGTTTCTAGAAAAATGCCGCTATTGCTTGTACATTTGCGGCGTTTCTAAGAAGCGCCAC
66 TTGCGGCGTTTCTAGAAAAACGCCGCTATTGCTTGTACATTTGCGGCGTTTCTAAAAAGCGCCAC
*
35789059 TAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGCTT
131 TAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGCAT
*
35789124 TTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGTCGTCGTTTAGCCAATATTT
196 TTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATATTT
* *
35789189 TAAGTCGCTTTTGCGGCGTTTCCTAAACAAAACGCCACTATAAATTAACAGAAATGGCGTCGTTG
261 TAAGTCACTTTTGCGGCGTTTCCTGAACAAAACGCCACTATAAATTAACAGAAATGGCGTCGTTG
35789254 GATTAATATAG
326 GATTAATATAG
* * * **
35789265 AGAAAATGCTAAGTTAAAATTCGTGTATAGAAACAGCGTCGTTTAGCCAAAATACTAAGACACTT
1 AGAAAATACTAAGTTAAAATTCGTGTACAGAAACGGCGTCGTTTAGCCAAAATTTTAAGACACTT
* * * * *
35789330 TTGCGGCGTTTCTCGAACAAACGCCGCAATTGCTTGTACATTTTCGGTGTTTCTAAGAAGCGCCA
66 TTGCGGCGTTTCTAGAA-AAACGCCGCTATTGCTTGTACATTTGCGGCGTTTCTAAAAAGCGCCA
* *
35789395 CTAAAAATTAAAGTTCTAATCCGAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTTTGGCA
130 CTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGCA
* * *
35789460 TTTTCTTTAAAAACGCCACTAACAA-TTAATTTTCTTAAGCTAAACGGCATCGTTTAGCCAATAT
195 TTTTCTGTAAAAACGCCACTAA-AATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATAT
* * *
35789524 TTTAAGTCACTATTGCGGCGTTTCATGAAC-AAACGCCACTAAAAATTAACAGAAA
259 TTTAAGTCACTTTTGCGGCGTTTCCTGAACAAAACGCCACTATAAATTAACAGAAA
35789579 CAGCGCCGTT
Statistics
Matches: 911, Mismatches: 71, Indels: 11
0.92 0.07 0.01
Matches are distributed among these distances:
336 305 0.33
337 599 0.66
338 7 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (336 bp):
AGAAAATACTAAGTTAAAATTCGTGTACAGAAACGGCGTCGTTTAGCCAAAATTTTAAGACACTT
TTGCGGCGTTTCTAGAAAAACGCCGCTATTGCTTGTACATTTGCGGCGTTTCTAAAAAGCGCCAC
TAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGCAT
TTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATATTT
TAAGTCACTTTTGCGGCGTTTCCTGAACAAAACGCCACTATAAATTAACAGAAATGGCGTCGTTG
GATTAATATAG
Found at i:35789542 original size:673 final size:673
Alignment explanation
Indices: 35788255--35789579 Score: 2136
Period size: 673 Copynumber: 2.0 Consensus size: 673
35788245 TAATAGAAAC
* * *
35788255 AGAAAATGCTAAGTTAAAATTGGTGTACATAAACGGCGTCGTTTAGCCAAAATTTTAAGACACTT
1 AGAAAATACTAAGTTAAAATTGGTGTACAGAAACGACGTCGTTTAGCCAAAATTTTAAGACACTT
*
35788320 TTGCGGCGTTTCTAAAAAAACGCCGCTATTTCTTGTACATTTGCGGCGCTTCTAGAAAAGCGCCA
66 TTGCGGCGTTTCTAAAAAAACGCCGCTATTGCTTGTACATTTGCGGCGCTTCTAGAAAAGCGCCA
*** *
35788385 CTAAAAAGCAAAGTTCTAATTTGAAACGGCGCTGTTTAATAAAGCTTTAATGCACATTTCTGGCA
131 CTAAAAAGCAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGCA
35788450 TTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATATT
196 TTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATATT
* *
35788515 TTAAGTCACTTTTGCGGCGTTTCCTGAACAAAATGCCACTATAAATTAACAGAAATGGCGCCATT
261 TTAAGTCACTTTTGCGGCGTTTCCTAAACAAAACGCCACTATAAATTAACAGAAATGGCGCCATT
* *
35788580 GGATTAATATAGAGAAAATACTAAGTTAAAATTCGTGTACAAAAACGGTGTCGTTTAGCCAAAAT
326 GGATTAATATAGAGAAAATACTAAGTTAAAATTCGTGTACAAAAACAGCGTCGTTTAGCCAAAAT
** *
35788645 TTTAAGACACTTTTGCGGCGTTTCTAGAAAAACGCCGCTATTGCTTGTACATTTGCCGGGTTTCT
391 ACTAAGACACTTTTGCGGCGTTTCTAGAAAAACGCCGCAATTGCTTGTACATTTGCCGGGTTTCT
* *
35788710 TAAAAATCGCCACTAAAAATTAAAGTTCTAATCCAAAACGGTGCCGTTTAATAAAGCTTTAATGC
456 TAAAAAGCGCCACTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGC
* *
35788775 ACATTTTTGGCGCTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACAGCGTCGT
521 ACATTTTTGGCACTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACAGCATCGT
* * * *
35788840 TTACCCAATATTTTAAGTCGCTTTTGCGGCGTTTCCTGAACAAAACCCCACTATAAATTAACAGA
586 TTACCCAATATTTTAAGTCACTATTGCGGCGTTTCATGAAC-AAACCCCACTAAAAATTAACAGA
35788905 AACGGTGTCGTTGGATTAATATAG
650 AACGGTGTCGTTGGATTAATATAG
* * *
35788929 AGAAAATACTATGTTAAAATTTGTGTACAGAAACGATGTCGTTTAGCCAAAATTTTAAGACACTT
1 AGAAAATACTAAGTTAAAATTGGTGTACAGAAACGACGTCGTTTAGCCAAAATTTTAAGACACTT
* * * *
35788994 TTGCGGCGTTTCTAGAAAAATGCCGCTATTGCTTGTACATTTGCGGCGTTTCTA-AGAAGCGCCA
66 TTGCGGCGTTTCTAAAAAAACGCCGCTATTGCTTGTACATTTGCGGCGCTTCTAGAAAAGCGCCA
** *
35789058 CTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGCT
131 CTAAAAAGCAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGCA
*
35789123 TTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGTCGTCGTTTAGCCAATATT
196 TTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATATT
* * *
35789188 TTAAGTCGCTTTTGCGGCGTTTCCTAAACAAAACGCCACTATAAATTAACAGAAATGGCGTCGTT
261 TTAAGTCACTTTTGCGGCGTTTCCTAAACAAAACGCCACTATAAATTAACAGAAATGGCGCCATT
* * *
35789253 GGATTAATATAGAGAAAATGCTAAGTTAAAATTCGTGTATAGAAACAGCGTCGTTTAGCCAAAAT
326 GGATTAATATAGAGAAAATACTAAGTTAAAATTCGTGTACAAAAACAGCGTCGTTTAGCCAAAAT
* *
35789318 ACTAAGACACTTTTGCGGCGTTTCTCGAACAAACGCCGCAATTGCTTGTACATTT-TCGGTGTTT
391 ACTAAGACACTTTTGCGGCGTTTCTAGAA-AAACGCCGCAATTGCTTGTACATTTGCCGG-GTTT
* *
35789382 C-TAAGAAGCGCCACTAAAAATTAAAGTTCTAATCCGAAACGGCGCCGTTTAATAAAGCTTTAAT
454 CTTAAAAAGCGCCACTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAAT
* * * *
35789446 GCACATTTTTGGCATTTTCTTTAAAAACGCCACTAACAA-TTAATTTTCTTAAGCTAAACGGCAT
519 GCACATTTTTGGCACTTTCTGTAAAAACGCCACTAA-AATTTAATTTGCTTAAGCTAAACAGCAT
* *
35789510 CGTTTAGCCAATATTTTAAGTCACTATTGCGGCGTTTCATGAACAAACGCCACTAAAAATTAACA
583 CGTTTACCCAATATTTTAAGTCACTATTGCGGCGTTTCATGAACAAACCCCACTAAAAATTAACA
35789575 GAAAC
648 GAAAC
35789580 AGCGCCGTTT
Statistics
Matches: 598, Mismatches: 50, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
672 24 0.04
673 434 0.73
674 140 0.23
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (673 bp):
AGAAAATACTAAGTTAAAATTGGTGTACAGAAACGACGTCGTTTAGCCAAAATTTTAAGACACTT
TTGCGGCGTTTCTAAAAAAACGCCGCTATTGCTTGTACATTTGCGGCGCTTCTAGAAAAGCGCCA
CTAAAAAGCAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGCACATTTCTGGCA
TTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACGGCGTCGTTTAGCCAATATT
TTAAGTCACTTTTGCGGCGTTTCCTAAACAAAACGCCACTATAAATTAACAGAAATGGCGCCATT
GGATTAATATAGAGAAAATACTAAGTTAAAATTCGTGTACAAAAACAGCGTCGTTTAGCCAAAAT
ACTAAGACACTTTTGCGGCGTTTCTAGAAAAACGCCGCAATTGCTTGTACATTTGCCGGGTTTCT
TAAAAAGCGCCACTAAAAATTAAAGTTCTAATCCAAAACGGCGCCGTTTAATAAAGCTTTAATGC
ACATTTTTGGCACTTTCTGTAAAAACGCCACTAAAATTTAATTTGCTTAAGCTAAACAGCATCGT
TTACCCAATATTTTAAGTCACTATTGCGGCGTTTCATGAACAAACCCCACTAAAAATTAACAGAA
ACGGTGTCGTTGGATTAATATAG
Found at i:35791040 original size:40 final size:41
Alignment explanation
Indices: 35790970--35791081 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 41
35790960 GCGCTTTATC
** **
35790970 AAAAACGCCGCTACTACAGCGAGCATTAGCGACGCAACACA
1 AAAAACGCCGCTAAAACCCCGAGCATTAGCGACGCAACACA
* * ** **
35791011 AAAAACGCCGCTAAAGCCCCGAGCA-TAGCGGCGCATTATT
1 AAAAACGCCGCTAAAACCCCGAGCATTAGCGACGCAACACA
* *
35791051 ATAAACGCCGCTAAAACCTCGAGCATTAGCG
1 AAAAACGCCGCTAAAACCCCGAGCATTAGCG
35791082 GCGATATTCT
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
40 32 0.56
41 25 0.44
ACGTcount: A:0.36, C:0.30, G:0.21, T:0.13
Consensus pattern (41 bp):
AAAAACGCCGCTAAAACCCCGAGCATTAGCGACGCAACACA
Found at i:35791230 original size:39 final size:39
Alignment explanation
Indices: 35791187--35791295 Score: 114
Period size: 40 Copynumber: 2.8 Consensus size: 39
35791177 AATTCTTCTT
35791187 TTTAGCGGCATTTTTATAAAACGCCGCTAATGCA-C-AGTC
1 TTTAGCGGCATTTTTATAAAACGCCGCTAATG-ATCGA-TC
* ** *
35791226 TTTAGCGGCGATTTTCATAATGCGCCGCTAATGATCGATT
1 TTTAGCGGC-ATTTTTATAAAACGCCGCTAATGATCGATC
* * *
35791266 TTTACCGGCATTTTTTTTAAACGCCGCTAA
1 TTTAGCGGCATTTTTATAAAACGCCGCTAA
35791296 AAGCCTGTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
39 26 0.46
40 30 0.53
41 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (39 bp):
TTTAGCGGCATTTTTATAAAACGCCGCTAATGATCGATC
Found at i:35800337 original size:5 final size:5
Alignment explanation
Indices: 35800327--35800373 Score: 58
Period size: 5 Copynumber: 9.2 Consensus size: 5
35800317 GTCTAAGATG
* * *
35800327 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGAAT TAAAT T
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGAAT TGAAT T
35800374 TACTCGTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
5 31 0.86
6 5 0.14
ACGTcount: A:0.43, C:0.00, G:0.15, T:0.43
Consensus pattern (5 bp):
TGAAT
Found at i:35800351 original size:21 final size:21
Alignment explanation
Indices: 35800327--35800367 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
35800317 GTCTAAGATG
*
35800327 TGAATTGAATTGAATTGAATA
1 TGAATTGAATTAAATTGAATA
*
35800348 TGAATTGTATTAAATTGAAT
1 TGAATTGAATTAAATTGAAT
35800368 TAAATTTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (21 bp):
TGAATTGAATTAAATTGAATA
Found at i:35800934 original size:24 final size:24
Alignment explanation
Indices: 35800905--35800958 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
35800895 TTCCCAATAT
*
35800905 ATGGCTATCCGGAGCTTCCCGTTA
1 ATGGCTATCCGGAGCTACCCGTTA
* **
35800929 ATGGCTTTTTGGAGCTACCCGTTA
1 ATGGCTATCCGGAGCTACCCGTTA
*
35800953 TTGGCT
1 ATGGCT
35800959 TGCATGAGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.15, C:0.24, G:0.26, T:0.35
Consensus pattern (24 bp):
ATGGCTATCCGGAGCTACCCGTTA
Found at i:35802980 original size:21 final size:23
Alignment explanation
Indices: 35802956--35803002 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
35802946 TAAGATAAAT
35802956 AAATATTTATC-TTA-ATATTTA
1 AAATATTTATCATTATATATTTA
* *
35802977 AAATTTTTATCATTATATTTTTA
1 AAATATTTATCATTATATATTTA
35803000 AAA
1 AAA
35803003 AAAATTATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.45
22 3 0.14
23 9 0.41
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (23 bp):
AAATATTTATCATTATATATTTA
Found at i:35810110 original size:19 final size:19
Alignment explanation
Indices: 35810086--35810123 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
35810076 TGGAGCGAAT
35810086 GGATCGCCTAAAGCCGTAC
1 GGATCGCCTAAAGCCGTAC
35810105 GGATCGCCTAAAGCCGTAC
1 GGATCGCCTAAAGCCGTAC
35810124 AGATTGCGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (19 bp):
GGATCGCCTAAAGCCGTAC
Found at i:35811505 original size:22 final size:23
Alignment explanation
Indices: 35811477--35811519 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
35811467 AAATGCCCTC
35811477 TTTTATTATTCA-ATTTATTGGA
1 TTTTATTATTCATATTTATTGGA
*
35811499 TTTTATTATTCATTTTTATTG
1 TTTTATTATTCATATTTATTG
35811520 AAAATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (23 bp):
TTTTATTATTCATATTTATTGGA
Found at i:35815095 original size:29 final size:28
Alignment explanation
Indices: 35815000--35815094 Score: 118
Period size: 30 Copynumber: 3.2 Consensus size: 28
35814990 ACCAAAAATT
35815000 TATTTTAAAAATAAAAAAATAAAAAAAAAA
1 TATTTT-AAAATAAAAAAA-AAAAAAAAAA
* *
35815030 TATTTTAAAATTAAAAAAAATTAAAAAAAG
1 TATTTTAAAA-TAAAAAAAA-AAAAAAAAA
35815060 TATTTTAAAATAAAAAATAAAAAATAAAAA
1 TATTTTAAAATAAAAAA-AAAAAA-AAAAA
35815090 TATTT
1 TATTT
35815095 ATTATATTCG
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
29 15 0.26
30 42 0.74
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.29
Consensus pattern (28 bp):
TATTTTAAAATAAAAAAAAAAAAAAAAA
Found at i:35815638 original size:8 final size:8
Alignment explanation
Indices: 35815627--35815651 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
35815617 TACTATTTAA
35815627 AAAATATT
1 AAAATATT
35815635 AAAATATT
1 AAAATATT
35815643 AAAATATT
1 AAAATATT
35815651 A
1 A
35815652 TCTTTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
AAAATATT
Found at i:35817751 original size:24 final size:28
Alignment explanation
Indices: 35817701--35817751 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 28
35817691 CTACGATGAC
*
35817701 TAATTAATTTAATTTTCACTTCGAATTT
1 TAATTAATTTAATTTGCACTTCGAATTT
35817729 TAATT-ATTT-ATTTGCA-TTC-AATT
1 TAATTAATTTAATTTGCACTTCGAATT
35817752 CAATAGTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 4 0.18
25 3 0.14
26 6 0.27
27 4 0.18
28 5 0.23
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.55
Consensus pattern (28 bp):
TAATTAATTTAATTTGCACTTCGAATTT
Found at i:35821596 original size:16 final size:15
Alignment explanation
Indices: 35821575--35821613 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
35821565 TTAAATTATG
*
35821575 GATATGTGTGTATTGT
1 GATATGTGTGTA-TAT
*
35821591 GATATGTGTTTATAT
1 GATATGTGTGTATAT
35821606 GATATGTG
1 GATATGTG
35821614 ACCATTATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (15 bp):
GATATGTGTGTATAT
Found at i:35821689 original size:39 final size:35
Alignment explanation
Indices: 35821646--35821743 Score: 124
Period size: 35 Copynumber: 2.7 Consensus size: 35
35821636 AACATGTTTT
*
35821646 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATG---T-TGATTATA
*
35821685 TGAGTATTGTGATATATGCTTAAATGTTGCTTATA
1 TGAGTATTGTGATATATGCTTAAATGTTGATTATA
* *
35821720 TGTGTAATGTGATATATGCTTAAA
1 TGAGTATTGTGATATATGCTTAAA
35821744 AGTGAATATG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
35 29 0.53
36 1 0.02
39 25 0.45
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (35 bp):
TGAGTATTGTGATATATGCTTAAATGTTGATTATA
Found at i:35827566 original size:15 final size:16
Alignment explanation
Indices: 35827540--35827569 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
35827530 TATTTACACG
35827540 GAAAAGGAAAAAAAAA
1 GAAAAGGAAAAAAAAA
35827556 GAAAA-GAAAAAAAA
1 GAAAAGGAAAAAAAA
35827570 GTTGGGTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
GAAAAGGAAAAAAAAA
Found at i:35832585 original size:15 final size:15
Alignment explanation
Indices: 35832562--35832592 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
35832552 TTACACTAAC
*
35832562 TATAGTATTTAAAAA
1 TATAATATTTAAAAA
35832577 TATAATATTTAAAAA
1 TATAATATTTAAAAA
35832592 T
1 T
35832593 GAAAGGTGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
TATAATATTTAAAAA
Found at i:35836539 original size:109 final size:105
Alignment explanation
Indices: 35836375--35836696 Score: 421
Period size: 109 Copynumber: 3.0 Consensus size: 105
35836365 GATTAAGATA
* * *
35836375 TAAAAGGATATTTGGCTATTTGGTCCAACGAGAAAATCGAAACCCAGCTCATTAGGGCACGTTTC
1 TAAAAGGATATTTGGCTA-TTGGTCGAACGAGAAAATCGAAACCCAACACATTAGGGCACGTTT-
35836440 CTCGAATTTCCAAGA-GCAAAACATTGCCTTATTTTGAAATTTTT
64 CTCGAATTT-CAA-ACGCAAAACATTGCCTTATTTTGAAA-TTTT
* * *
35836484 TAAAAGGATATTCGACTATCTGGTCGAACGAGAAAATCGAAACCCAACACATTAGGGTACGTTTT
1 TAAAAGGATATTTGGCTAT-TGGTCGAACGAGAAAATCGAAACCCAACACATTAGGGCACG-TTT
*
35836549 CTCGTATTTTCAAACGCAAAACATTGCCTTATTTTGAAATTTT
64 CTCG-AATTTCAAACGCAAAACATTGCCTTATTTTGAAATTTT
*
35836592 TAAAAGGATATTTGGCAATTAGGTCGAACGAGAAAAATCGAAACCCAACACATTAGGGCACGCTT
1 TAAAAGGATATTTGGCTATT-GGTCGAACGAG-AAAATCGAAACCCAACACATTAGGGCACG-TT
* * * *
35836657 TCTCGAACTTCAAAATGCAAAATATTGCCTTATTTAGAAA
63 TCTCGAATTTC-AAACGCAAAACATTGCCTTATTTTGAAA
35836697 AATTTTCTTT
Statistics
Matches: 189, Mismatches: 17, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
107 1 0.01
108 37 0.20
109 144 0.76
110 7 0.04
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (105 bp):
TAAAAGGATATTTGGCTATTGGTCGAACGAGAAAATCGAAACCCAACACATTAGGGCACGTTTCT
CGAATTTCAAACGCAAAACATTGCCTTATTTTGAAATTTT
Found at i:35836747 original size:21 final size:20
Alignment explanation
Indices: 35836723--35836767 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
35836713 GTATGGTGTT
*
35836723 AATATGCATGATG-GAATAATA
1 AATATG-ATAATGTGAATAA-A
35836744 AATATGATAATGTGAATAAA
1 AATATGATAATGTGAATAAA
35836764 AATA
1 AATA
35836768 ATATGAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.53, C:0.02, G:0.16, T:0.29
Consensus pattern (20 bp):
AATATGATAATGTGAATAAA
Found at i:35837349 original size:3 final size:3
Alignment explanation
Indices: 35837333--35837369 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
35837323 AAAATAAAAC
*
35837333 TAA TAA TAGT TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
35837370 ACTAAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 29 0.94
4 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:35837671 original size:53 final size:53
Alignment explanation
Indices: 35837591--35837697 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
35837581 AAGAAAAGAA
35837591 AGAAAAGAGGGGCAAATTGCAATACGCCGCAAAATCGGAGGAACTGCGCGCAC
1 AGAAAAGAGGGGCAAATTGCAATACGCCGCAAAATCGGAGGAACTGCGCGCAC
*
35837644 AGAAAAGAGGGGCAAATTGCAATACGCCGCAAAATCGGAGGGACTGCGCGCAC
1 AGAAAAGAGGGGCAAATTGCAATACGCCGCAAAATCGGAGGAACTGCGCGCAC
35837697 A
1 A
35837698 AATAGCCCAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.37, C:0.22, G:0.31, T:0.09
Consensus pattern (53 bp):
AGAAAAGAGGGGCAAATTGCAATACGCCGCAAAATCGGAGGAACTGCGCGCAC
Found at i:35837863 original size:2 final size:2
Alignment explanation
Indices: 35837858--35837894 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
35837848 AGAGAGAAAA
35837858 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
35837895 AGGCCCTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:35839484 original size:21 final size:22
Alignment explanation
Indices: 35839443--35839484 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
35839433 TTTTATTTTT
*
35839443 AAAATCATGAAAAGAATTATAG
1 AAAATCATGAAAAGAAATATAG
*
35839465 AAAATCAT-AAAATAAATATA
1 AAAATCATGAAAAGAAATATA
35839485 TCATACAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.24
Consensus pattern (22 bp):
AAAATCATGAAAAGAAATATAG
Found at i:35839540 original size:36 final size:33
Alignment explanation
Indices: 35839487--35839590 Score: 95
Period size: 37 Copynumber: 3.0 Consensus size: 33
35839477 TAAATATATC
*
35839487 ATACAAAAATATTTAAAAATTTAAAAAATATAGAAA
1 ATACAAAAA-ATGTAAAAA-TTAAAAAATATA-AAA
*
35839523 ATACAAAAAAGTGTAAAAAATTATAAAATTATTAAAA
1 ATACAAAAAA-TGT-AAAAATTA-AAAAATA-TAAAA
*
35839560 ATGA-AAAAAATGTTAAAA-TAAAAAATATAAA
1 AT-ACAAAAAATGTAAAAATTAAAAAATATAAA
35839591 TTATATAAAC
Statistics
Matches: 59, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
32 4 0.07
33 6 0.10
34 2 0.03
35 5 0.08
36 17 0.29
37 22 0.37
38 3 0.05
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (33 bp):
ATACAAAAAATGTAAAAATTAAAAAATATAAAA
Found at i:35839550 original size:27 final size:26
Alignment explanation
Indices: 35839501--35839584 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 26
35839491 AAAAATATTT
* *
35839501 AAAAATTTAAAAAATATAGAAAATACA
1 AAAAATGTAAAAAATATATAAAATA-A
*
35839528 AAAAAGTGTAAAAAAT-TATAAAATTATT
1 AAAAA-TGTAAAAAATATATAAAA-TA-A
* *
35839556 AAAAATGAAAAAAATGT-TAAAATAA
1 AAAAATGTAAAAAATATATAAAATAA
35839581 AAAA
1 AAAA
35839585 TATAAATTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
25 4 0.08
26 2 0.04
27 25 0.52
28 17 0.35
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.24
Consensus pattern (26 bp):
AAAAATGTAAAAAATATATAAAATAA
Found at i:35839622 original size:16 final size:16
Alignment explanation
Indices: 35839547--35839623 Score: 50
Period size: 16 Copynumber: 4.8 Consensus size: 16
35839537 AAAAAATTAT
*
35839547 AAAATTATTAAAAATGA
1 AAAATTATGAAAAAT-A
* *
35839564 AAAA-AATGTTAAAATA
1 AAAATTATG-AAAAATA
* *
35839580 AAAAATAT-AAATTATA
1 AAAATTATGAAA-AATA
* *
35839596 TAAACTATGAAAAATA
1 AAAATTATGAAAAATA
35839612 AAAATTATGAAA
1 AAAATTATGAAA
35839624 TAATGTTTTA
Statistics
Matches: 45, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
15 2 0.04
16 29 0.64
17 14 0.31
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.27
Consensus pattern (16 bp):
AAAATTATGAAAAATA
Found at i:35839995 original size:25 final size:26
Alignment explanation
Indices: 35839960--35840021 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 26
35839950 TTTTTCTATA
35839960 TTTTC-ATAATTTTTA-AAACTTTAT
1 TTTTCTATAATTTTTATAAACTTTAT
* **
35839984 TTTTCTATAATTTCTATAATTTTTAT
1 TTTTCTATAATTTTTATAAACTTTAT
35840010 TTTT-T-TAATTTT
1 TTTTCTATAATTTT
35840022 AATATTTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 11 0.34
25 10 0.31
26 11 0.34
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.66
Consensus pattern (26 bp):
TTTTCTATAATTTTTATAAACTTTAT
Found at i:35840018 original size:15 final size:15
Alignment explanation
Indices: 35840000--35840033 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
35839990 ATAATTTCTA
* *
35840000 TAATTTTTATTTTTT
1 TAATTTTAATATTTT
35840015 TAATTTTAATATTTT
1 TAATTTTAATATTTT
35840030 TAAT
1 TAAT
35840034 ATGTTATGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TAATTTTAATATTTT
Found at i:35840194 original size:16 final size:16
Alignment explanation
Indices: 35840146--35840194 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
35840136 TTTCATAAAT
35840146 TTTTTATT-TTTTA-A
1 TTTTTATTATTTTATA
*
35840160 TTTTTTATGATTTTAATA
1 -TTTTTATTATTTT-ATA
35840178 TTTTTATTATTTTATA
1 TTTTTATTATTTTATA
35840194 T
1 T
35840195 AATTTTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 7 0.24
16 8 0.28
17 13 0.45
18 1 0.03
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (16 bp):
TTTTTATTATTTTATA
Found at i:35848994 original size:24 final size:24
Alignment explanation
Indices: 35848962--35849009 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
35848952 TTTATTGCAA
35848962 TATTGAGTGGCTTGACCACAACGT
1 TATTGAGTGGCTTGACCACAACGT
*
35848986 TATTGAGTGGCTTGACCATAACGT
1 TATTGAGTGGCTTGACCACAACGT
35849010 GCAACTTGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
TATTGAGTGGCTTGACCACAACGT
Found at i:35849097 original size:63 final size:63
Alignment explanation
Indices: 35848957--35849111 Score: 186
Period size: 63 Copynumber: 2.5 Consensus size: 63
35848947 GTAGTTTTAT
*
35848957 TGCAATATTGAGTGGCTTGACCACAACGTTATTGAGTGGCTTGACCATAACGTGCAACTTGTC
1 TGCAATATTGAGTGGCTTGACCACAACGTTATTGAGTGGCTTGACCATAACGAGCAACTTGTC
* * * * * ** * * *
35849020 TGCGATAGTGAGTGG-TTTAGCCATAATGTTATTTTGTGGTTTGACCATAATGAGTAACTTGTC
1 TGCAATATTGAGTGGCTTGA-CCACAACGTTATTGAGTGGCTTGACCATAACGAGCAACTTGTC
*
35849083 TGCAATATTCAGTGGCTTGACCACAACGT
1 TGCAATATTGAGTGGCTTGACCACAACGT
35849112 GCAACTTGAA
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
62 3 0.04
63 67 0.92
64 3 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (63 bp):
TGCAATATTGAGTGGCTTGACCACAACGTTATTGAGTGGCTTGACCATAACGAGCAACTTGTC
Found at i:35866747 original size:28 final size:26
Alignment explanation
Indices: 35866715--35866768 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 26
35866705 GAAGCTAACT
35866715 AAACTATCAACTAAAACCAACTAAAAAA
1 AAACTATCAACTAAAACC--CTAAAAAA
*
35866743 AAACTATGAACTAAAACCCTAAAAAA
1 AAACTATCAACTAAAACCCTAAAAAA
35866769 TAAGGAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 8 0.32
28 17 0.68
ACGTcount: A:0.63, C:0.20, G:0.02, T:0.15
Consensus pattern (26 bp):
AAACTATCAACTAAAACCCTAAAAAA
Found at i:35868568 original size:25 final size:25
Alignment explanation
Indices: 35868496--35868568 Score: 67
Period size: 26 Copynumber: 2.9 Consensus size: 25
35868486 TGAATTTTCC
* *
35868496 CAAAATTTTACCGGGGTAAAATCGT
1 CAAAATTTTACTGGAGTAAAATCGT
* * * *
35868521 AAAAAATTTA-TCGGCAATGAAATCGT
1 CAAAATTTTACT-GG-AGTAAAATCGT
35868547 CAAAATTTTACTGGAGTAAAAT
1 CAAAATTTTACTGGAGTAAAAT
35868569 TGGGATGAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
25 16 0.46
26 18 0.51
27 1 0.03
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.29
Consensus pattern (25 bp):
CAAAATTTTACTGGAGTAAAATCGT
Found at i:35868767 original size:28 final size:28
Alignment explanation
Indices: 35868735--35868827 Score: 73
Period size: 28 Copynumber: 3.2 Consensus size: 28
35868725 ATATAACATG
35868735 AAGGGGGCGGCAACCCTAGTAGAAATAC
1 AAGGGGGCGGCAACCCTAGTAGAAATAC
* * * * *
35868763 AAGGGTGAGTCATTCACCTCTCA-TATAACAT-G
1 AAGGGGGCGGCA---ACC-CT-AGTAGAA-ATAC
35868795 AAGGGGGCGGCAACCCTAGTAGAAATAC
1 AAGGGGGCGGCAACCCTAGTAGAAATAC
35868823 AAGGG
1 AAGGG
35868828 TGAGTCATTC
Statistics
Matches: 47, Mismatches: 10, Indels: 16
0.64 0.14 0.22
Matches are distributed among these distances:
27 3 0.06
28 20 0.43
29 3 0.06
31 3 0.06
32 15 0.32
33 3 0.06
ACGTcount: A:0.34, C:0.20, G:0.29, T:0.16
Consensus pattern (28 bp):
AAGGGGGCGGCAACCCTAGTAGAAATAC
Found at i:35868811 original size:60 final size:60
Alignment explanation
Indices: 35868718--35868840 Score: 246
Period size: 60 Copynumber: 2.0 Consensus size: 60
35868708 GAGGCCTAAA
35868718 ACCTCTCATATAACATGAAGGGGGCGGCAACCCTAGTAGAAATACAAGGGTGAGTCATTC
1 ACCTCTCATATAACATGAAGGGGGCGGCAACCCTAGTAGAAATACAAGGGTGAGTCATTC
35868778 ACCTCTCATATAACATGAAGGGGGCGGCAACCCTAGTAGAAATACAAGGGTGAGTCATTC
1 ACCTCTCATATAACATGAAGGGGGCGGCAACCCTAGTAGAAATACAAGGGTGAGTCATTC
35868838 ACC
1 ACC
35868841 CCTCTCCTAC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (60 bp):
ACCTCTCATATAACATGAAGGGGGCGGCAACCCTAGTAGAAATACAAGGGTGAGTCATTC
Found at i:35870325 original size:7 final size:7
Alignment explanation
Indices: 35870313--35870345 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
35870303 CAAAACTCGG
35870313 AATAATA
1 AATAATA
35870320 AATAATAA
1 AATAAT-A
35870328 AATAATA
1 AATAATA
35870335 AATAATA
1 AATAATA
35870342 AATA
1 AATA
35870346 CAATATTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AATAATA
Found at i:35870333 original size:15 final size:15
Alignment explanation
Indices: 35870313--35870343 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
35870303 CAAAACTCGG
35870313 AATAATAAATAATAA
1 AATAATAAATAATAA
35870328 AATAATAAATAATAA
1 AATAATAAATAATAA
35870343 A
1 A
35870344 TACAATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AATAATAAATAATAA
Found at i:35871248 original size:21 final size:24
Alignment explanation
Indices: 35871196--35871257 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
35871186 TCACAAATTT
* *
35871196 CACTATCACTATCATCATAGTTTG
1 CACTATTACAATCATCATAGTTTG
**
35871220 CACTATTACAATCATCATAGTTCA
1 CACTATTACAATCATCATAGTTTG
*
35871244 CATTATTACAATCA
1 CACTATTACAATCA
35871258 ACTTCTTCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (24 bp):
CACTATTACAATCATCATAGTTTG
Found at i:35872052 original size:12 final size:12
Alignment explanation
Indices: 35872035--35872059 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35872025 ATTTTATAAC
35872035 ATAAATATTGTT
1 ATAAATATTGTT
35872047 ATAAATATTGTT
1 ATAAATATTGTT
35872059 A
1 A
35872060 ATATCCTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:35879810 original size:2 final size:2
Alignment explanation
Indices: 35879803--35879849 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
35879793 ACATTCCTTT
* * * *
35879803 GA GA GA GA GT GT GA GA GA GA GA GA GA GA GG GA GA GA CA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
35879845 GA GA G
1 GA GA G
35879850 TACGTGTGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.43, C:0.02, G:0.51, T:0.04
Consensus pattern (2 bp):
GA
Found at i:35879826 original size:18 final size:18
Alignment explanation
Indices: 35879803--35879849 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
35879793 ACATTCCTTT
* *
35879803 GAGAGAGAGTGTGAGAGA
1 GAGAGAGAGAGGGAGAGA
35879821 GAGAGAGAGAGGGAGAGA
1 GAGAGAGAGAGGGAGAGA
*
35879839 CAGAGAGAGAG
1 GAGAGAGAGAG
35879850 TACGTGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.43, C:0.02, G:0.51, T:0.04
Consensus pattern (18 bp):
GAGAGAGAGAGGGAGAGA
Found at i:35880671 original size:20 final size:20
Alignment explanation
Indices: 35880646--35880698 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
35880636 AAACTATAAT
35880646 TGCAAAAAAG-TTCAAGCATG
1 TGCAAAAAAGATT-AAGCATG
**
35880666 TGCAAAAAAGATTGGGCATG
1 TGCAAAAAAGATTAAGCATG
35880686 TGC-AAAAAGATTA
1 TGCAAAAAAGATTA
35880699 TCGTCTCAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 9 0.31
20 18 0.62
21 2 0.07
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (20 bp):
TGCAAAAAAGATTAAGCATG
Found at i:35884780 original size:16 final size:16
Alignment explanation
Indices: 35884761--35884822 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
35884751 ATTTTAATAA
35884761 AATTTAATATTAAATT
1 AATTTAATATTAAATT
* **
35884777 AATTTGATATTTATCTT
1 AATTTAATA-TTAAATT
* * *
35884794 GA-TAAATATTATATT
1 AATTTAATATTAAATT
35884809 AATTTAATATTAAA
1 AATTTAATATTAAA
35884823 ATGATTAAGT
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
15 7 0.21
16 21 0.62
17 6 0.18
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (16 bp):
AATTTAATATTAAATT
Found at i:35884965 original size:25 final size:25
Alignment explanation
Indices: 35884929--35884976 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
35884919 TTGTAGAGAT
35884929 AAAATTTTCTAAAGAGATTATTTCAG
1 AAAATTTTCTAAAGAGATT-TTTCAG
*
35884955 AAAA-TTTCTAAAGATATTTTTC
1 AAAATTTTCTAAAGAGATTTTTC
35884977 TGATTTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 13 0.62
26 4 0.19
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (25 bp):
AAAATTTTCTAAAGAGATTTTTCAG
Found at i:35888424 original size:20 final size:19
Alignment explanation
Indices: 35888399--35888462 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 19
35888389 GCTTGTATAG
35888399 GTTTGCACTTTGGTGCCTCT
1 GTTTGCACTTT-GTGCCTCT
*
35888419 GTTTGCACTTCAGTGCCTCT
1 GTTTGCACTT-TGTGCCTCT
* *
35888439 GATCGCACATTTGTGCCTCT
1 GTTTGCAC-TTTGTGCCTCT
35888459 GTTT
1 GTTT
35888463 CGCATATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 34 0.94
21 2 0.06
ACGTcount: A:0.09, C:0.27, G:0.22, T:0.42
Consensus pattern (19 bp):
GTTTGCACTTTGTGCCTCT
Found at i:35890829 original size:12 final size:14
Alignment explanation
Indices: 35890807--35890838 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
35890797 TACAAACGTG
35890807 AGAATCAGATA-AC
1 AGAATCAGATACAC
35890820 AGAA-CAGATACAC
1 AGAATCAGATACAC
35890833 AGAATC
1 AGAATC
35890839 CTACCCCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.35
13 10 0.59
14 1 0.06
ACGTcount: A:0.53, C:0.19, G:0.16, T:0.12
Consensus pattern (14 bp):
AGAATCAGATACAC
Found at i:35893657 original size:327 final size:327
Alignment explanation
Indices: 35893058--35893708 Score: 1086
Period size: 327 Copynumber: 2.0 Consensus size: 327
35893048 AGAGCTTCGC
* * *
35893058 TAACTTTTGCAGAGAGTAGTCCATCCAAATCGGAGTAAAATAGGTGAACTTGGTCAGTCGACCCA
1 TAACTTTTCCAGAGAGTAGTCCATCCAAACCGGAATAAAATAGGTGAACTTGGTCAGTCGACCCA
* * * *
35893123 TGATGACCCAAACAGAACCCTTTTTAGTGGGTGTCAAGGGCAACCCACTAACAAAGTCCATTGTC
66 CGATAACCCAAACAGAACCCTTTTTAGTGGGTGTCAAGGGCAACCCACTAACAAAGTCCATCGCC
* *
35893188 ACTCGTTCTCATTTCCATAAAAGAATCTTAACAGGTTGTAGTAAACCAAAAGGCAAATGGTGCTC
131 ACTCGTTCTCATTTCCATAAAAGAATCTTAACAGGTTGTAGCAAACCAAAAGGAAAATGGTGCTC
* * * *
35893253 AGCCTTAACTTGCTGGCACGTTAGACAATGAGCAACAAAATCTGTTCCCTCTCGTTTCAAACTCG
196 AGCCTTAACTTACTGACACGTTAGACAATGAGCAACAAAATCTGTTACCTCTCGTTTAAAACTCG
*
35893318 GCCACCAATACAATTCACTGAGATCCCGATACATCTTATTACCACCGGGATGTATAACATAAGGC
261 GCCACCAATACAATTCACTGAGATCCCGATACATCTTATTACCACCGGAATGTATAACATAAGGC
35893383 CT
326 CT
*
35893385 TAACTTTTCCAGAGAGTAGTCCATCCAAACCGGAATAAAATAGGTGGACTTGGTCAGTCGACCCA
1 TAACTTTTCCAGAGAGTAGTCCATCCAAACCGGAATAAAATAGGTGAACTTGGTCAGTCGACCCA
35893450 CGATAACCCAAACAGAACCCTTTTTAGTGGGTGTCAAGGGCAACCCACTAACAAAGTCCATCGCC
66 CGATAACCCAAACAGAACCCTTTTTAGTGGGTGTCAAGGGCAACCCACTAACAAAGTCCATCGCC
* *** *
35893515 ACTCGTTCTTATTTCCATAAAAGAATCTTAACAGGTTGTAGCAAACTGGAAGGAAAATGGTGTTC
131 ACTCGTTCTCATTTCCATAAAAGAATCTTAACAGGTTGTAGCAAACCAAAAGGAAAATGGTGCTC
*
35893580 AGCCTTAACTTACTGACAGGTTAGACAATGAGCAACAAAATCTGTTACCTCTCGTTTAAAACTCG
196 AGCCTTAACTTACTGACACGTTAGACAATGAGCAACAAAATCTGTTACCTCTCGTTTAAAACTCG
* * *
35893645 GCCACTAATACAATTCACTGAGATCCCGATACATCTTATTACCGCCGGAATGTATAGCATAAGG
261 GCCACCAATACAATTCACTGAGATCCCGATACATCTTATTACCACCGGAATGTATAACATAAGG
35893709 GCTACCATGC
Statistics
Matches: 300, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
327 300 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (327 bp):
TAACTTTTCCAGAGAGTAGTCCATCCAAACCGGAATAAAATAGGTGAACTTGGTCAGTCGACCCA
CGATAACCCAAACAGAACCCTTTTTAGTGGGTGTCAAGGGCAACCCACTAACAAAGTCCATCGCC
ACTCGTTCTCATTTCCATAAAAGAATCTTAACAGGTTGTAGCAAACCAAAAGGAAAATGGTGCTC
AGCCTTAACTTACTGACACGTTAGACAATGAGCAACAAAATCTGTTACCTCTCGTTTAAAACTCG
GCCACCAATACAATTCACTGAGATCCCGATACATCTTATTACCACCGGAATGTATAACATAAGGC
CT
Found at i:35894059 original size:62 final size:62
Alignment explanation
Indices: 35893982--35894101 Score: 204
Period size: 62 Copynumber: 1.9 Consensus size: 62
35893972 AATCAATAAC
* *
35893982 CGCTCTACGACTGAGAGCATCGGCCACCACATTGGCCATACCAGGATGATACTCTATCGTGT
1 CGCTCTACGACTGAGAGCATCGGCCACCAAATTGGACATACCAGGATGATACTCTATCGTGT
* *
35894044 CGCTCTATGACTGAGAGCATCGGCCACCAAATTGGACTTACCAGGATGATACTCTATC
1 CGCTCTACGACTGAGAGCATCGGCCACCAAATTGGACATACCAGGATGATACTCTATC
35894102 ATGTAGTCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (62 bp):
CGCTCTACGACTGAGAGCATCGGCCACCAAATTGGACATACCAGGATGATACTCTATCGTGT
Found at i:35896589 original size:25 final size:25
Alignment explanation
Indices: 35896550--35896660 Score: 168
Period size: 25 Copynumber: 4.4 Consensus size: 25
35896540 GAGATTCATG
* *
35896550 AACTCACGCCTACAAGCATTAACAT
1 AACTCACACCTACAAGCATCAACAT
* * *
35896575 AGCTCACGCCCACAAGCATCAACAT
1 AACTCACACCTACAAGCATCAACAT
*
35896600 AACTCACACGTACAAGCATCAACAT
1 AACTCACACCTACAAGCATCAACAT
35896625 AACTCACACCTACAAGCATCAACAT
1 AACTCACACCTACAAGCATCAACAT
35896650 AACTCACACCT
1 AACTCACACCT
35896661 TAGAAGGCAG
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 78 1.00
ACGTcount: A:0.41, C:0.36, G:0.07, T:0.16
Consensus pattern (25 bp):
AACTCACACCTACAAGCATCAACAT
Found at i:35901908 original size:28 final size:28
Alignment explanation
Indices: 35901871--35902023 Score: 238
Period size: 28 Copynumber: 5.5 Consensus size: 28
35901861 TAAATTGTGC
35901871 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
35901899 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
35901927 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* * *
35901954 AGCACTAACTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
35901982 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
35902009 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35902024 GACTTAATAA
Statistics
Matches: 117, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
27 48 0.41
28 69 0.59
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:35901967 original size:55 final size:55
Alignment explanation
Indices: 35901871--35902023 Score: 243
Period size: 55 Copynumber: 2.8 Consensus size: 55
35901861 TAAATTGTGC
*
35901871 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
35901927 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAACTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
35901982 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
35902024 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
55 73 0.81
56 17 0.19
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:35910080 original size:28 final size:28
Alignment explanation
Indices: 35910043--35910195 Score: 238
Period size: 28 Copynumber: 5.5 Consensus size: 28
35910033 TAAATTGTGC
35910043 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
35910071 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
35910099 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* * *
35910126 AGCACTAACTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
35910154 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
35910181 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35910196 GACTTAATAA
Statistics
Matches: 117, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
27 48 0.41
28 69 0.59
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:35910139 original size:55 final size:55
Alignment explanation
Indices: 35910043--35910195 Score: 243
Period size: 55 Copynumber: 2.8 Consensus size: 55
35910033 TAAATTGTGC
*
35910043 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
35910099 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAACTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
35910154 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
35910196 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
55 73 0.81
56 17 0.19
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:35924504 original size:70 final size:69
Alignment explanation
Indices: 35924384--35924567 Score: 244
Period size: 70 Copynumber: 2.7 Consensus size: 69
35924374 AACCCAAAAG
* * *
35924384 GTTAATGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTAACAGGTTCAATA-CAACAGCCCT
1 GTTAGTGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTCACAAGTTCAATATCAA-AGCCC-
35924448 TAAACA
64 TAAACA
* * * *
35924454 GTTAGTGAGAGTTAAAAGCTCCCAACTATCATTCTAATGCTCGCAAGTTCAATATCAAAGCTCTA
1 GTTAGTGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTCACAAGTTCAATATCAAAGCCCTA
35924519 AACA
66 AACA
* * * *
35924523 GTTAGCGATAGTTAAAAGCTCCCAGCTGTCATTTTAAGGCTCACA
1 GTTAGTGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTCACA
35924568 GGTTTAACAT
Statistics
Matches: 99, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 44 0.44
70 52 0.53
71 3 0.03
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (69 bp):
GTTAGTGAGAGTTAAAAGCTCCCAACTGTCATTCTAAGGCTCACAAGTTCAATATCAAAGCCCTA
AACA
Found at i:35924721 original size:58 final size:56
Alignment explanation
Indices: 35924601--35924776 Score: 176
Period size: 58 Copynumber: 3.1 Consensus size: 56
35924591 CAGCTCACGA
* * * *
35924601 ATTTACATTCCCGACTAATTATTTCAAAAA-AAGGCCTAAGTTCAAAACAACTTGCGG
1 ATTTACATTCCCTACTAAGTATTTCAAAAATAA-GCCTAAGTT-AAAACAACTCGAGG
* * *
35924658 ATTTACATT-CCTAGCTGAGTATTTCAGAAAATATGCCTAAGTTGAAAACAGCTCGAGG
1 ATTTACATTCCCTA-CTAAGTATTTCA-AAAATAAGCCTAAGTT-AAAACAACTCGAGG
* * * *
35924716 GTTTACATTCCCTACTAATTATATCAAAAAATAAGCCTAAGCTTAAAACAACTTGAGG
1 ATTTACATTCCCTACTAAGTATTTC-AAAAATAAGCCTAAG-TTAAAACAACTCGAGG
35924774 ATT
1 ATT
35924777 CACAATCGAT
Statistics
Matches: 97, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
56 3 0.03
57 19 0.20
58 67 0.69
59 8 0.08
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.30
Consensus pattern (56 bp):
ATTTACATTCCCTACTAAGTATTTCAAAAATAAGCCTAAGTTAAAACAACTCGAGG
Found at i:35926417 original size:15 final size:16
Alignment explanation
Indices: 35926387--35926418 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
35926377 ACTTTAGGGG
35926387 CAAAAATGTAATTTTT
1 CAAAAATGTAATTTTT
*
35926403 CAAAAATGTGATTTTT
1 CAAAAATGTAATTTTT
35926419 GGACTTGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (16 bp):
CAAAAATGTAATTTTT
Found at i:35926761 original size:51 final size:49
Alignment explanation
Indices: 35926640--35926886 Score: 230
Period size: 51 Copynumber: 4.9 Consensus size: 49
35926630 GTGAAAGTGA
* ** * *
35926640 TGGTCACGTGTGTAGTACTATGTTCAGGCTACTACGTGTACTAGAAT-GAT
1 TGGTCACATGTGTAGTACTATGAGCAGGCTACTACGTGTA-TCGGATAG-T
* ** * * *
35926690 AGGTCGTATGTGTAGTACTATGAGCAGGCTACTATGAGTACCGGATAGCT
1 TGGTCACATGTGTAGTACTATGAGCAGGCTACTACGTGTATCGGATAG-T
* *
35926740 TCGATCACGTGTGTAGTACTAT-ATGCAGGCTACTACGTGTATCGGATAGT
1 T-GGTCACATGTGTAGTACTATGA-GCAGGCTACTACGTGTATCGGATAGT
* *
35926790 GATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAATGA
1 --TGGTCACATGTGTAGTACTATGAGCAGGCTACTACGTGTATCGGAT-A-GT
* *
35926843 TGGTCACATGTGTAGTACTATGTA-CAGGCTACTATGTGAATCGG
1 TGGTCACATGTGTAGTACTATG-AGCAGGCTACTACGTGTATCGG
35926887 TATCATTAAT
Statistics
Matches: 161, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
49 3 0.02
50 36 0.22
51 119 0.74
52 2 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGAGCAGGCTACTACGTGTATCGGATAGT
Found at i:35926855 original size:102 final size:100
Alignment explanation
Indices: 35926637--35926886 Score: 290
Period size: 102 Copynumber: 2.5 Consensus size: 100
35926627 AAAGTGAAAG
* * **
35926637 TGATGGTCACGTGTGTAGTACTATGTTCAGGCTACTACGTGTA-CTAGAATGATAGGTCGTATGT
1 TGATGGTCACGTGTGTAGTACTATGTACAGGCTACTACGTGTATC-GGAATGATAGGTCACATGT
*
35926701 GTAGTACTATGAGCAGGCTACTATGAGTACCGGATA
65 GTAGTACTATGAGCAGGCTACTACGAGTACCGGATA
* * * *
35926737 -GCTTCGATCACGTGTGTAGTACTATATGCAGGCTACTACGTGTATCGGATAGTGAT-GGTCACA
1 TG-AT-GGTCACGTGTGTAGTACTATGTACAGGCTACTACGTGTATCGGA-A-TGATAGGTCACA
* * *
35926800 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAA
62 TGTGTAGTACTATGAGCAGGCTACTACGAGTACCGGAT-A
* * *
35926840 TGATGGTCACATGTGTAGTACTATGTACAGGCTACTATGTGAATCGG
1 TGATGGTCACGTGTGTAGTACTATGTACAGGCTACTACGTGTATCGG
35926887 TATCATTAAT
Statistics
Matches: 125, Mismatches: 18, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
99 1 0.01
100 1 0.01
101 38 0.30
102 78 0.62
103 6 0.05
104 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (100 bp):
TGATGGTCACGTGTGTAGTACTATGTACAGGCTACTACGTGTATCGGAATGATAGGTCACATGTG
TAGTACTATGAGCAGGCTACTACGAGTACCGGATA
Found at i:35927125 original size:16 final size:16
Alignment explanation
Indices: 35927104--35927135 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
35927094 TGATTGAAAG
35927104 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
35927120 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
35927136 GCAACAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:35933508 original size:5 final size:5
Alignment explanation
Indices: 35933498--35933522 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
35933488 GCATTCGTTG
35933498 TTCTT TTCTT TTCTT TTCTT TTCTT
1 TTCTT TTCTT TTCTT TTCTT TTCTT
35933523 GTTTTGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTCTT
Found at i:35934084 original size:19 final size:19
Alignment explanation
Indices: 35934062--35934098 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
35934052 TTATTAAAAT
* *
35934062 TTAAAAATATATAAAATTA
1 TTAAAAAAACATAAAATTA
35934081 TTAAAAAAACATAAAATT
1 TTAAAAAAACATAAAATT
35934099 CAATCCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
TTAAAAAAACATAAAATTA
Found at i:35941770 original size:15 final size:16
Alignment explanation
Indices: 35941752--35941789 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
35941742 TGTTAACAGC
*
35941752 TTAATAATTAACT-AT
1 TTAATAATTAAATAAT
35941767 TTAA-AATTAAATAAT
1 TTAATAATTAAATAAT
35941782 TTAATAAT
1 TTAATAAT
35941790 ATTTTCTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 7 0.35
15 10 0.50
16 3 0.15
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAATAATTAAATAAT
Found at i:35941950 original size:7 final size:7
Alignment explanation
Indices: 35941940--35942030 Score: 155
Period size: 7 Copynumber: 12.9 Consensus size: 7
35941930 AAGGATTGGG
35941940 AATTGAA
1 AATTGAA
35941947 AATTGAA
1 AATTGAA
35941954 AATTGAA
1 AATTGAA
35941961 AATTGAA
1 AATTGAA
*
35941968 AATTGAT
1 AATTGAA
*
35941975 GATTGAAA
1 AATTG-AA
35941983 AATTGAA
1 AATTGAA
35941990 AATTGAA
1 AATTGAA
35941997 AATTGAA
1 AATTGAA
35942004 AATTGAA
1 AATTGAA
35942011 AATTGAA
1 AATTGAA
35942018 AATTGAA
1 AATTGAA
35942025 AATTGA
1 AATTGA
35942031 GGATTGAGGA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
7 74 0.94
8 5 0.06
ACGTcount: A:0.55, C:0.00, G:0.15, T:0.30
Consensus pattern (7 bp):
AATTGAA
Found at i:35942043 original size:14 final size:14
Alignment explanation
Indices: 35941931--35942073 Score: 81
Period size: 14 Copynumber: 10.1 Consensus size: 14
35941921 AAAATAACTA
*
35941931 AGGATTGGGAATTG
1 AGGATTGAGAATTG
** *
35941945 AAAATTGAAAATTG
1 AGGATTGAGAATTG
** *
35941959 AAAATTGAAAATTG
1 AGGATTGAGAATTG
* *
35941973 ATGATTGAAAAATTG
1 AGGATTG-AGAATTG
** *
35941988 AAAATTGAAAATTG
1 AGGATTGAGAATTG
** *
35942002 AAAATTGAAAATTG
1 AGGATTGAGAATTG
** *
35942016 AAAATTGAAAATTG
1 AGGATTGAGAATTG
*
35942030 AGGATTGAGGATTG
1 AGGATTGAGAATTG
35942044 AGGATTGAGAACTT-
1 AGGATTGAGAA-TTG
*
35942058 AGGATTGAGTATTG
1 AGGATTGAGAATTG
35942072 AG
1 AG
35942074 TTGAAAAGAA
Statistics
Matches: 112, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
13 2 0.02
14 96 0.86
15 14 0.12
ACGTcount: A:0.45, C:0.01, G:0.24, T:0.29
Consensus pattern (14 bp):
AGGATTGAGAATTG
Found at i:35942074 original size:7 final size:7
Alignment explanation
Indices: 35942026--35942073 Score: 62
Period size: 7 Copynumber: 6.9 Consensus size: 7
35942016 AAAATTGAAA
35942026 ATTGAGG
1 ATTGAGG
35942033 ATTGAGG
1 ATTGAGG
35942040 ATTGAGG
1 ATTGAGG
*
35942047 ATTGAGA
1 ATTGAGG
35942054 ACTT-AGG
1 A-TTGAGG
*
35942061 ATTGAGT
1 ATTGAGG
35942068 ATTGAG
1 ATTGAG
35942074 TTGAAAAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
6 2 0.06
7 32 0.89
8 2 0.06
ACGTcount: A:0.31, C:0.02, G:0.35, T:0.31
Consensus pattern (7 bp):
ATTGAGG
Found at i:35942408 original size:10 final size:9
Alignment explanation
Indices: 35942385--35942515 Score: 61
Period size: 10 Copynumber: 13.7 Consensus size: 9
35942375 TTGGATTGTT
*
35942385 TTTTTATTA
1 TTTTTATAA
35942394 TTTTTATAA
1 TTTTTATAA
*
35942403 TATTTTATTTA
1 T-TTTTA-TAA
35942414 TATTTTA-ACA
1 T-TTTTATA-A
35942424 -TTTTATAA
1 TTTTTATAA
*
35942432 TATTTTATGA
1 T-TTTTATAA
* *
35942442 TTTTTTTATT
1 TTTTTATA-A
*
35942452 TTTTTAGAA
1 TTTTTATAA
35942461 TTTTTTATCAA
1 -TTTTTAT-AA
**
35942472 TTAATAGTAA
1 TTTTTA-TAA
35942482 TTTTTAT-A
1 TTTTTATAA
*
35942490 TTTTTATATT
1 TTTTTATA-A
35942500 TTTTTATAA
1 TTTTTATAA
35942509 TATTTTA
1 T-TTTTA
35942516 AACTAAATCT
Statistics
Matches: 92, Mismatches: 17, Indels: 25
0.69 0.13 0.19
Matches are distributed among these distances:
8 14 0.15
9 17 0.18
10 49 0.53
11 12 0.13
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTTTATAA
Found at i:35942410 original size:19 final size:19
Alignment explanation
Indices: 35942386--35942454 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
35942376 TGGATTGTTT
35942386 TTTTATTATTTTTATAATA
1 TTTTATTATTTTTATAATA
* *
35942405 TTTTATTTATATTT-TAACA
1 TTTTA-TTATTTTTATAATA
* *
35942424 TTTTATAATATTTTATGAT-
1 TTTTATTAT-TTTTATAATA
35942443 TTTT-TTATTTTT
1 TTTTATTATTTTT
35942455 TTAGAATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
18 6 0.15
19 21 0.52
20 9 0.22
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (19 bp):
TTTTATTATTTTTATAATA
Found at i:35942456 original size:29 final size:27
Alignment explanation
Indices: 35942383--35942468 Score: 82
Period size: 29 Copynumber: 3.0 Consensus size: 27
35942373 ATTTGGATTG
35942383 TTTTTTTATTATTTTTATAATATTTTAT
1 TTTTTTTATT-TTTTTATAATATTTTAT
***
35942411 TTATATTTTAACATTTTATAATATTTTAT
1 TT-T-TTTTATTTTTTTATAATATTTTAT
* *
35942440 GATTTTTTTATTTTTTTAGAATTTTTTAT
1 --TTTTTTTATTTTTTTATAATATTTTAT
35942469 CAATTAATAG
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
28 2 0.04
29 36 0.78
30 6 0.13
31 2 0.04
ACGTcount: A:0.27, C:0.01, G:0.02, T:0.70
Consensus pattern (27 bp):
TTTTTTTATTTTTTTATAATATTTTAT
Found at i:35942457 original size:48 final size:48
Alignment explanation
Indices: 35942385--35942516 Score: 135
Period size: 48 Copynumber: 2.7 Consensus size: 48
35942375 TTGGATTGTT
* * * *
35942385 TTTTTATTATTTTTATAATATTTTATTTATATTTTAAC-ATT-TTA-TAA
1 TTTTTA-TATTTTTATATTTTTTTA-TAATATTTTAACAATTAATAGTAA
* * * *
35942432 TATTTTATGATTTTTTTATTTTTTTAGAATTTTTTATCAATTAATAGTAA
1 T-TTTTAT-ATTTTTATATTTTTTTATAATATTTTAACAATTAATAGTAA
35942482 TTTTTATATTTTTATATTTTTTTATAATATTTTAA
1 TTTTTATATTTTTATATTTTTTTATAATATTTTAA
35942517 ACTAAATCTA
Statistics
Matches: 68, Mismatches: 12, Indels: 9
0.76 0.13 0.10
Matches are distributed among these distances:
47 10 0.15
48 46 0.68
49 8 0.12
50 4 0.06
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (48 bp):
TTTTTATATTTTTATATTTTTTTATAATATTTTAACAATTAATAGTAA
Found at i:35943666 original size:16 final size:16
Alignment explanation
Indices: 35943614--35943666 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
35943604 GAAAGACCCT
35943614 AAAAATTTAAG-CTCAA
1 AAAAATTTAAGTC-CAA
* *
35943630 AAAAATTTAAATCCGA
1 AAAAATTTAAGTCCAA
*
35943646 AAAAATTCAAGTCCAA
1 AAAAATTTAAGTCCAA
35943662 AAAAA
1 AAAAA
35943667 CTAAAACTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
16 30 0.97
17 1 0.03
ACGTcount: A:0.60, C:0.13, G:0.06, T:0.21
Consensus pattern (16 bp):
AAAAATTTAAGTCCAA
Found at i:35953558 original size:166 final size:165
Alignment explanation
Indices: 35953262--35953818 Score: 740
Period size: 166 Copynumber: 3.4 Consensus size: 165
35953252 GGAAAGTGTC
* * *
35953262 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACATGTAGTGGCACTAGCAGCGTTTATCT
1 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTTTCT
* * ** *
35953327 GGAAACGCCGATAAAGATCCAGCATTTGCGACGCTTATAAAATAACGCCGCTAATGA-CTGGTAC
66 GGAAACGCCGGTAAAGATCAAGCATTTGCGGTGCTTATAAAA-AACGCCGCTAAAGATC-GGTAC
* *
35953391 ATTAGCGGCGCTACCACAAAAACGCCACTAATGCTCA
129 ATTAGCGGCGCTACTACAAAAACACCACTAATGCTCA
* * *
35953428 GCAAATAATTAAACAGAACGCCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTTTCC
1 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTTTCT
* * * *
35953493 GTAAACGCCGGTAAAGATCTAGTATTTGCGGTGCTTATAACAAAACGCCACTAAAGATCGGTACA
66 GGAAACGCCGGTAAAGATCAAGCATTTGCGGTGCTTATAA-AAAACGCCGCTAAAGATCGGTACA
* * * *
35953558 TTATCGGTGCTACTACAAAAACTCCACTAATGCTCT
130 TTAGCGGCGCTACTACAAAAACACCACTAATGCTCA
* *
35953594 GCAAATAATTAAGCAGAAAACCATCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTATT-
1 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTT-TTC
* * * *
35953658 TGGAAACACCGGTAAAGATCAAGCAGTTACGGTGCTTATATTAAAACGCCGCTAAAGATCGGTAC
65 TGGAAACGCCGGTAAAGATCAAGCATTTGCGGTGCTTATA-AAAAACGCCGCTAAAGATCGGTAC
* * * *
35953723 ATTAGCGACGCTGCTATAAAAACACCACTAATGCTCC
129 ATTAGCGGCGCTACTACAAAAACACCACTAATGCTCA
* * * *
35953760 GTAAATAATTAAGCATAACGCCGTCGTTTAACTTTGACTTGTAGTGGCACTAGCGGCGT
1 GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGT
35953819 CTTTATACAA
Statistics
Matches: 342, Mismatches: 45, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
166 337 0.99
167 5 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (165 bp):
GCAAATAATTAAGCAGAACACCGTCGTTTAACTTTGACCTGTAGTGGCACTAGCGGCGTTTTTCT
GGAAACGCCGGTAAAGATCAAGCATTTGCGGTGCTTATAAAAAACGCCGCTAAAGATCGGTACAT
TAGCGGCGCTACTACAAAAACACCACTAATGCTCA
Done.