Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 120 of 221
Found at i:36866892 original size:10 final size:10
Alignment explanation
Indices: 36866877--36866904 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
36866867 TGTATTTATG
36866877 AAAAAAATAT
1 AAAAAAATAT
36866887 AAAAAAATAT
1 AAAAAAATAT
36866897 AAAAAAAT
1 AAAAAAAT
36866905 TATAGAGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAAAAATAT
Found at i:36867708 original size:30 final size:30
Alignment explanation
Indices: 36867674--36867746 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
36867664 GGCCTCCAGT
*
36867674 CCGGCCATCGGCCGATCATCGGCCACCGTG
1 CCGGCCATCGGCCAATCATCGGCCACCGTG
36867704 CCGGCCATCGGCCAATCATCGGCCACCGTG
1 CCGGCCATCGGCCAATCATCGGCCACCGTG
*
36867734 CCAGCCATCGGCC
1 CCGGCCATCGGCC
36867747 TCCGGCGACG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.15, C:0.45, G:0.27, T:0.12
Consensus pattern (30 bp):
CCGGCCATCGGCCAATCATCGGCCACCGTG
Found at i:36867736 original size:19 final size:18
Alignment explanation
Indices: 36867705--36867752 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
36867695 GCCACCGTGC
* *
36867705 CGGCCATCGGCCAATCAT
1 CGGCCACCGGCCAACCAT
*
36867723 CGGCCACCGTGCCAGCCAT
1 CGGCCACCG-GCCAACCAT
*
36867742 CGGCCTCCGGC
1 CGGCCACCGGC
36867753 GACGGCACCG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.15, C:0.46, G:0.27, T:0.12
Consensus pattern (18 bp):
CGGCCACCGGCCAACCAT
Found at i:36877757 original size:3 final size:3
Alignment explanation
Indices: 36877749--36877792 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
36877739 CCTGACTTTC
36877749 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
36877793 CCAGTACTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:36879347 original size:9 final size:9
Alignment explanation
Indices: 36879335--36879421 Score: 113
Period size: 9 Copynumber: 9.6 Consensus size: 9
36879325 ATAAAAAAGT
36879335 TTCGGGTAA
1 TTCGGGTAA
*
36879344 TTCGGGTATTT
1 TTCGGGTA--A
36879355 TTC-GGTAA
1 TTCGGGTAA
*
36879363 TTCGGTTAA
1 TTCGGGTAA
*
36879372 TTCGGTTAA
1 TTCGGGTAA
36879381 TTCGGGTAA
1 TTCGGGTAA
36879390 TTCGGGTAA
1 TTCGGGTAA
36879399 TTCGGGTAA
1 TTCGGGTAA
*
36879408 TTCGGTTAA
1 TTCGGGTAA
36879417 TTCGG
1 TTCGG
36879422 TTAACCGACC
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
8 3 0.04
9 60 0.86
10 4 0.06
11 3 0.04
ACGTcount: A:0.20, C:0.11, G:0.29, T:0.40
Consensus pattern (9 bp):
TTCGGGTAA
Found at i:36895146 original size:45 final size:46
Alignment explanation
Indices: 36895078--36895180 Score: 120
Period size: 46 Copynumber: 2.3 Consensus size: 46
36895068 TGAGCCCACA
* *
36895078 TGCCCGTGTGGCTTGCCCATGT-GGTCCACACGCCCAGA-TTGGCCT
1 TGCCCGTGTGGCATGCCCATGTGGGCCCACACGCCCA-ACTTGGCCT
** * *
36895123 TGCCCGTGTGGCATGCCTGTGTGGGCCCACATGCCTAACTTGGCCT
1 TGCCCGTGTGGCATGCCCATGTGGGCCCACACGCCCAACTTGGCCT
*
36895169 AGCCCGTGTGGC
1 TGCCCGTGTGGC
36895181 TCACACGGCC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
45 20 0.41
46 29 0.59
ACGTcount: A:0.11, C:0.34, G:0.31, T:0.24
Consensus pattern (46 bp):
TGCCCGTGTGGCATGCCCATGTGGGCCCACACGCCCAACTTGGCCT
Found at i:36895212 original size:29 final size:29
Alignment explanation
Indices: 36895170--36895238 Score: 138
Period size: 29 Copynumber: 2.4 Consensus size: 29
36895160 ACTTGGCCTA
36895170 GCCCGTGTGGCTCACACGGCCAAGCACAC
1 GCCCGTGTGGCTCACACGGCCAAGCACAC
36895199 GCCCGTGTGGCTCACACGGCCAAGCACAC
1 GCCCGTGTGGCTCACACGGCCAAGCACAC
36895228 GCCCGTGTGGC
1 GCCCGTGTGGC
36895239 AACGACAGAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.17, C:0.41, G:0.30, T:0.12
Consensus pattern (29 bp):
GCCCGTGTGGCTCACACGGCCAAGCACAC
Found at i:36898861 original size:6 final size:6
Alignment explanation
Indices: 36898850--36898880 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
36898840 AATAAACCAT
36898850 AAAATA AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA A
36898881 TCATAAGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:36899185 original size:7 final size:7
Alignment explanation
Indices: 36899168--36899208 Score: 64
Period size: 7 Copynumber: 5.7 Consensus size: 7
36899158 GATTTTAAGC
36899168 TTAGAGGT
1 TTAG-GGT
36899176 TTAGGGT
1 TTAGGGT
36899183 TTAGGGT
1 TTAGGGT
*
36899190 TTAGAGT
1 TTAGGGT
36899197 TTAGGGT
1 TTAGGGT
36899204 TTAGG
1 TTAGG
36899209 ATGAAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
7 27 0.87
8 4 0.13
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (7 bp):
TTAGGGT
Found at i:36899185 original size:21 final size:21
Alignment explanation
Indices: 36899161--36899207 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
36899151 ATTGATAGAT
36899161 TTTA-AGCTTAGAGGTTTAGGG
1 TTTAGAGCTTAGA-GTTTAGGG
* *
36899182 TTTAGGGTTTAGAGTTTAGGG
1 TTTAGAGCTTAGAGTTTAGGG
36899203 TTTAG
1 TTTAG
36899208 GATGAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.43
Consensus pattern (21 bp):
TTTAGAGCTTAGAGTTTAGGG
Found at i:36899208 original size:21 final size:22
Alignment explanation
Indices: 36899168--36899208 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
36899158 GATTTTAAGC
36899168 TTAGAGGTTTAGGGTTTAGGGT
1 TTAGAGGTTTAGGGTTTAGGGT
36899190 TTAGA-GTTTAGGGTTTAGG
1 TTAGAGGTTTAGGGTTTAGG
36899209 ATGAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.20, C:0.00, G:0.39, T:0.41
Consensus pattern (22 bp):
TTAGAGGTTTAGGGTTTAGGGT
Found at i:36899912 original size:99 final size:99
Alignment explanation
Indices: 36899741--36899936 Score: 338
Period size: 99 Copynumber: 2.0 Consensus size: 99
36899731 ATTGCTTCAC
*
36899741 TATTTCAGCCTCCCTCATCTTCAAGTTCTCAAAATCTCTTCTGAGATTAATAAGTTATTGCTACC
1 TATTTCAGCCTCCCACATCTTCAAGTTCTCAAAATCTCTTCTGAGATTAATAAGTTATTGCTACC
* *
36899806 TGGTCTTGTCTGAACCTTGAAACTCTTCTTTTAG
66 TGGTCTTGTCTAAACCTTGAAACTCCTCTTTTAG
* *
36899840 TATTTCAGCCTCCCACATCTTCAAGTTCTTAAAATCTCTTCTGAGATTAATAAGTTGTTGCTACC
1 TATTTCAGCCTCCCACATCTTCAAGTTCTCAAAATCTCTTCTGAGATTAATAAGTTATTGCTACC
*
36899905 TGGTCTTGTTTAAACCTTGAAACTCCTCTTTT
66 TGGTCTTGTCTAAACCTTGAAACTCCTCTTTT
36899937 GGTTTATCCC
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 91 1.00
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (99 bp):
TATTTCAGCCTCCCACATCTTCAAGTTCTCAAAATCTCTTCTGAGATTAATAAGTTATTGCTACC
TGGTCTTGTCTAAACCTTGAAACTCCTCTTTTAG
Found at i:36903954 original size:12 final size:11
Alignment explanation
Indices: 36903936--36903964 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
36903926 ATTTCGCATT
36903936 GAAAAAAAAAA
1 GAAAAAAAAAA
36903947 GAAAAAAAAAA
1 GAAAAAAAAAA
36903958 GAAAAAA
1 GAAAAAA
36903965 TGCTGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:36905107 original size:12 final size:13
Alignment explanation
Indices: 36905082--36905123 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
36905072 ATTACACCAA
36905082 ATAAAAATT-TAT
1 ATAAAAATTATAT
*
36905094 ATATCAAATTATAT
1 ATA-AAAATTATAT
36905108 ATTAAAAATTATAT
1 A-TAAAAATTATAT
36905122 AT
1 AT
36905124 TATAAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 3 0.12
13 6 0.24
14 14 0.56
15 2 0.08
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (13 bp):
ATAAAAATTATAT
Found at i:36905130 original size:28 final size:27
Alignment explanation
Indices: 36905083--36905140 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
36905073 TTACACCAAA
36905083 TAAAAATTTATATATCAAA-TTATATAT
1 TAAAAATTTATATATCAAATTTA-ATAT
36905110 TAAAAATTATATATTAT-AAATTTAATAT
1 TAAAAATT-TATA-TATCAAATTTAATAT
36905138 TAA
1 TAA
36905141 TCGCTACGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
27 8 0.29
28 14 0.50
29 6 0.21
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (27 bp):
TAAAAATTTATATATCAAATTTAATAT
Found at i:36905137 original size:16 final size:14
Alignment explanation
Indices: 36905099--36905140 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
36905089 TTTATATATC
36905099 AAATTATATATTAA
1 AAATTATATATTAA
*
36905113 AAATTATATATTAT
1 AAATTATATATTAA
36905127 AAATT-TAATATTAA
1 AAATTAT-ATATTAA
36905141 TCGCTACGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 1 0.04
14 24 0.96
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AAATTATATATTAA
Found at i:36911185 original size:47 final size:47
Alignment explanation
Indices: 36911098--36911265 Score: 228
Period size: 47 Copynumber: 3.6 Consensus size: 47
36911088 CCCTTCGGGA
* * * * * * *
36911098 CTTATCTCATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
36911145 CCTGTTACATATATACACTTTCACATTGATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36911192 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36911239 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36911266 ACCAACCCTT
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 106 1.00
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36915594 original size:40 final size:40
Alignment explanation
Indices: 36915550--36915688 Score: 215
Period size: 40 Copynumber: 3.5 Consensus size: 40
36915540 TCTTCGAGGT
* * * *
36915550 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
36915590 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
36915630 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGGC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
*
36915670 TTAGCCCAGATATATCACT
1 TTAGCCCGGATATATCACT
36915689 CTCAATTCTC
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
Found at i:36917792 original size:47 final size:47
Alignment explanation
Indices: 36917666--36917832 Score: 219
Period size: 47 Copynumber: 3.6 Consensus size: 47
36917656 CCCTTCGGGA
* * * * * * *
36917666 CTTATCTCATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
36917713 CCTGTTACATATATACAC-TTCACATTGATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36917759 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36917806 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36917833 ACCAACCCTT
Statistics
Matches: 102, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 36 0.35
47 66 0.65
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36930471 original size:35 final size:36
Alignment explanation
Indices: 36930403--36930472 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 36
36930393 TGTGAAAGAG
* * *
36930403 AATATGTGGGTATGTTATTCATTCCATGTGACAGTA
1 AATATGTGAGTATGTTATTCATACCATGCGACAGTA
* *
36930439 AATATGTGATTATGTT-TTCATAGCATGCGACAGT
1 AATATGTGAGTATGTTATTCATACCATGCGACAGT
36930473 GATTATAATG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 15 0.52
36 14 0.48
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (36 bp):
AATATGTGAGTATGTTATTCATACCATGCGACAGTA
Found at i:36933675 original size:14 final size:14
Alignment explanation
Indices: 36933656--36933687 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
36933646 GAGTTTGGGG
36933656 GAGAAATAAGGTTA
1 GAGAAATAAGGTTA
36933670 GAGAAATAAGGTTA
1 GAGAAATAAGGTTA
36933684 GAGA
1 GAGA
36933688 CATTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (14 bp):
GAGAAATAAGGTTA
Found at i:36939671 original size:16 final size:16
Alignment explanation
Indices: 36939650--36939681 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
36939640 ATTCATTCTC
36939650 CCAACATGATCTTATT
1 CCAACATGATCTTATT
36939666 CCAACATGATCTTATT
1 CCAACATGATCTTATT
36939682 TTATCTCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (16 bp):
CCAACATGATCTTATT
Found at i:36943520 original size:21 final size:21
Alignment explanation
Indices: 36943459--36943520 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
36943449 ATTTGGGGCT
*
36943459 AATTTAAAAATGATTCAAAGATA
1 AATTT-AAAAT-ATTCAAAAATA
* * **
36943482 CATTAAAAATATAGAAAAATA
1 AATTTAAAATATTCAAAAATA
*
36943503 AATTTAAAATATTTAAAA
1 AATTTAAAATATTCAAAA
36943521 TTACCCTTAA
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
21 22 0.73
22 5 0.17
23 3 0.10
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (21 bp):
AATTTAAAATATTCAAAAATA
Found at i:36946079 original size:19 final size:20
Alignment explanation
Indices: 36946055--36946095 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
36946045 CCTCCTTCTG
*
36946055 CATGGGCGTG-TGTCCCCCA
1 CATGGGCGTGTTGACCCCCA
36946074 CATGGGCGTGTTGACCCCCA
1 CATGGGCGTGTTGACCCCCA
36946094 CA
1 CA
36946096 CGGCTAGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.15, C:0.37, G:0.29, T:0.20
Consensus pattern (20 bp):
CATGGGCGTGTTGACCCCCA
Found at i:36950556 original size:40 final size:40
Alignment explanation
Indices: 36950473--36950735 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
36950463 GTGAATGCTG
* * * * * *
36950473 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
36950513 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
36950553 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
36950593 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
36950633 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
36950673 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
36950712 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36950736 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:36952304 original size:42 final size:42
Alignment explanation
Indices: 36952250--36952457 Score: 204
Period size: 42 Copynumber: 4.9 Consensus size: 42
36952240 GCAATGAGGA
* * *
36952250 AAAAAACACCGCT-AATGATCATGTTCTTTAGCGGCGCTTGGG
1 AAAAAACACCGCTAAAAG-TAATGTTCTATAGCGGCGCTTGGG
* * * *
36952292 AAAAAACACCGCT-AAAGATCATGTTCTTTAGCGGTGCTTAGG
1 AAAAAACACCGCTAAAAG-TAATGTTCTATAGCGGCGCTTGGG
* * * *
36952334 AAAAAAGCACCGCTAAAAGTAATATTCTATAGTGGCGCTTCGT
1 AAAAAA-CACCGCTAAAAGTAATGTTCTATAGCGGCGCTTGGG
* *
36952377 AAAAAACGCCGCTAAAAGTAATGTTCTATAGCGGCGCTTGGT
1 AAAAAACACCGCTAAAAGTAATGTTCTATAGCGGCGCTTGGG
* ** * * *
36952419 AGAAAATGCTGATAAAAGTAATGTTCTTTAGCGGCGCTT
1 AAAAAACACCGCTAAAAGTAATGTTCTATAGCGGCGCTT
36952458 CATCTACAAA
Statistics
Matches: 145, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
42 111 0.77
43 30 0.21
44 4 0.03
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (42 bp):
AAAAAACACCGCTAAAAGTAATGTTCTATAGCGGCGCTTGGG
Found at i:36952371 original size:85 final size:85
Alignment explanation
Indices: 36952246--36952415 Score: 200
Period size: 85 Copynumber: 2.0 Consensus size: 85
36952236 TGCGGCAATG
* * * * *
36952246 AGGAAAAAAACACCGCTAATGATCATGTTCTTTAGCGGCGCTTGGGAAAAAACACCGCT-AAAGA
1 AGGAAAAAAACACCGCTAAAGATAATATTCTATAGCGGCGCTTCGGAAAAAACACCGCTAAAAG-
* * *
36952310 TCATGTTCTTTAGCGGTGCTT
65 TAATGTTCTATAGCGGCGCTT
* * * *
36952331 AGGAAAAAAGCACCGCTAAA-AGTAATATTCTATAGTGGCGCTTCGTAAAAAACGCCGCTAAAAG
1 AGGAAAAAAACACCGCTAAAGA-TAATATTCTATAGCGGCGCTTCGGAAAAAACACCGCTAAAAG
36952395 TAATGTTCTATAGCGGCGCTT
65 TAATGTTCTATAGCGGCGCTT
36952416 GGTAGAAAAT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
84 1 0.01
85 66 0.93
86 4 0.06
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (85 bp):
AGGAAAAAAACACCGCTAAAGATAATATTCTATAGCGGCGCTTCGGAAAAAACACCGCTAAAAGT
AATGTTCTATAGCGGCGCTT
Found at i:36952487 original size:43 final size:40
Alignment explanation
Indices: 36952344--36952500 Score: 161
Period size: 42 Copynumber: 3.8 Consensus size: 40
36952334 AAAAAAGCAC
* *
36952344 CGCTAAAAGTAATATTCTATAGTGGCGCTTCGTAAAAAACG
1 CGCTAAAAGTAATGTTCTATAGCGGCGCTTCGT-AAAAACG
* *
36952385 CCGCTAAAAGTAATGTTCTATAGCGGCGCTTGGTAGAAAATG
1 -CGCTAAAAGTAATGTTCTATAGCGGCGCTTCGTA-AAAACG
* * * *
36952427 CTGATAAAAGTAATGTTCTTTAGCGGCGCTTCATCTACAAACG
1 C-GCTAAAAGTAATGTTCTATAGCGGCGCTTC--GTAAAAACG
* *
36952470 TCGCTAAAAGTAGTGTTCTTTAGCGGCGCTT
1 -CGCTAAAAGTAATGTTCTATAGCGGCGCTT
36952501 ATTTCACAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.02
42 62 0.63
43 31 0.32
44 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (40 bp):
CGCTAAAAGTAATGTTCTATAGCGGCGCTTCGTAAAAACG
Found at i:36952994 original size:21 final size:21
Alignment explanation
Indices: 36952948--36953003 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
36952938 GCTTCTCTTG
* *
36952948 CTGCTTCTCTCGCTGTAGCTT
1 CTGCTTCTCTCGCTGAACCTT
36952969 CTGCTTCTCTCGCTGCAACCTT
1 CTGCTTCTCTCGCTG-AACCTT
*
36952991 -TGCTTCCCTCGCT
1 CTGCTTCTCTCGCT
36953004 TCCGCCTATG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.05, C:0.39, G:0.16, T:0.39
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGAACCTT
Found at i:36958448 original size:9 final size:9
Alignment explanation
Indices: 36958434--36959156 Score: 333
Period size: 9 Copynumber: 83.8 Consensus size: 9
36958424 AAGTTATACA
36958434 TTATGTAAG
1 TTATGTAAG
36958443 TTATGTAAG
1 TTATGTAAG
36958452 TTATGTAAG
1 TTATGTAAG
*
36958461 TTGTGTAAG
1 TTATGTAAG
*
36958470 TTGTGTAAG
1 TTATGTAAG
*
36958479 TTGTGT-A-
1 TTATGTAAG
* *
36958486 TTATGAAAC
1 TTATGTAAG
36958495 TTATGTAAG
1 TTATGTAAG
*
36958504 TTATGT--C
1 TTATGTAAG
36958511 TTATGTAAG
1 TTATGTAAG
*
36958520 TTATGTAAA
1 TTATGTAAG
36958529 TTATGT-A-
1 TTATGTAAG
*
36958536 TTACGTAAG
1 TTATGTAAG
*
36958545 TTATGT--C
1 TTATGTAAG
36958552 TTATGTAAG
1 TTATGTAAG
*
36958561 TTATGTAAA
1 TTATGTAAG
36958570 TTATGTAA-
1 TTATGTAAG
*
36958578 -TACGTAAG
1 TTATGTAAG
36958586 TTATGTAAG
1 TTATGTAAG
*
36958595 TTGTGT-A-
1 TTATGTAAG
*
36958602 TTATATAAG
1 TTATGTAAG
36958611 TTATGTAAG
1 TTATGTAAG
*
36958620 TTCTGT-A-
1 TTATGTAAG
36958627 TTATGTAAG
1 TTATGTAAG
36958636 TTATGTAAG
1 TTATGTAAG
* **
36958645 TTTTTGT-TT
1 -TTATGTAAG
*
36958654 TTGTGT-A-
1 TTATGTAAG
* *
36958661 TTATATAAC
1 TTATGTAAG
* *
36958670 TTATTTAAT
1 TTATGTAAG
*
36958679 TTATGTAGG
1 TTATGTAAG
*
36958688 GTATGTATTA-
1 TTATGTA--AG
*
36958698 TTATGTAAC
1 TTATGTAAG
* *
36958707 TTATTTAAT
1 TTATGTAAG
*
36958716 TTATGTAGG
1 TTATGTAAG
*
36958725 GTATGTAAG
1 TTATGTAAG
36958734 TTATGTAAG
1 TTATGTAAG
*
36958743 TTGTGT-A-
1 TTATGTAAG
*
36958750 TTATTTACA-
1 TTATGTA-AG
*
36958759 -CATGTAAG
1 TTATGTAAG
*
36958767 TTGTGT-A-
1 TTATGTAAG
36958774 TTATGTAAG
1 TTATGTAAG
*
36958783 TTATGCAAG
1 TTATGTAAG
36958792 TTATGT-A-
1 TTATGTAAG
*
36958799 TTAAGT-AG
1 TTATGTAAG
36958807 ATTATGTAAG
1 -TTATGTAAG
36958817 TTATGTAAG
1 TTATGTAAG
*
36958826 TTGTGT-A-
1 TTATGTAAG
*
36958833 TTATTTACA-
1 TTATGTA-AG
*
36958842 -CATGTAAG
1 TTATGTAAG
*
36958850 TTGTGT-A-
1 TTATGTAAG
36958857 TTATGTAAG
1 TTATGTAAG
*
36958866 TTATGCAAG
1 TTATGTAAG
36958875 TTATGT-A-
1 TTATGTAAG
* *
36958882 TTAAGTAGG
1 TTATGTAAG
36958891 TTATGTAAG
1 TTATGTAAG
36958900 TTATGT-A-
1 TTATGTAAG
36958907 TTATGTAAG
1 TTATGTAAG
36958916 TTATGTAAG
1 TTATGTAAG
* **
36958925 TTTTTGT-TT
1 -TTATGTAAG
*
36958934 TTGTGT-A-
1 TTATGTAAG
*
36958941 TTATGTAAC
1 TTATGTAAG
* *
36958950 TTATTTAAT
1 TTATGTAAG
*
36958959 TTATGTAGG
1 TTATGTAAG
*
36958968 GTATGTATTA-
1 TTATGTA--AG
36958978 TTATGTAAG
1 TTATGTAAG
36958987 TTATTATGTAAG
1 ---TTATGTAAG
*
36958999 ATATTATGTAACTTA
1 ---TTATGTAA---G
36959014 TTATGTAAG
1 TTATGTAAG
36959023 TTATGT-A-
1 TTATGTAAG
36959030 TTATGT-A-
1 TTATGTAAG
*
36959037 TTATATAAG
1 TTATGTAAG
*
36959046 TTATGT-AT
1 TTATGTAAG
*
36959054 TTATTTAAG
1 TTATGTAAG
36959063 TTAT-T-A-
1 TTATGTAAG
*
36959069 TTATGTAAA
1 TTATGTAAG
36959078 TTATGTAAG
1 TTATGTAAG
* *
36959087 CTATGTACCAT
1 TTATGTA--AG
36959098 TTAT-TAAG
1 TTATGTAAG
*
36959106 TTATGTATG
1 TTATGTAAG
* *
36959115 -TATGTGAC
1 TTATGTAAG
*
36959123 TTTTGTAAG
1 TTATGTAAG
*
36959132 TTATGTGAG
1 TTATGTAAG
*
36959141 TTATGTAAA
1 TTATGTAAG
36959150 TTATGTA
1 TTATGTA
36959157 TTAAATTAAA
Statistics
Matches: 545, Mismatches: 108, Indels: 122
0.70 0.14 0.16
Matches are distributed among these distances:
6 4 0.01
7 96 0.18
8 60 0.11
9 328 0.60
10 26 0.05
11 4 0.01
12 27 0.05
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:36958513 original size:16 final size:16
Alignment explanation
Indices: 36958494--36958566 Score: 79
Period size: 16 Copynumber: 5.0 Consensus size: 16
36958484 TATTATGAAA
36958494 CTTATGTAAGTTATGT
1 CTTATGTAAGTTATGT
36958510 CTTATGTAAGTTATG-
1 CTTATGTAAGTTATGT
36958525 --TA---AA-TTATGT
1 CTTATGTAAGTTATGT
* *
36958535 ATTACGTAAGTTATGT
1 CTTATGTAAGTTATGT
36958551 CTTATGTAAGTTATGT
1 CTTATGTAAGTTATGT
36958567 AAATTATGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
9 5 0.10
10 2 0.04
12 2 0.04
13 2 0.04
15 2 0.04
16 35 0.73
ACGTcount: A:0.29, C:0.05, G:0.18, T:0.48
Consensus pattern (16 bp):
CTTATGTAAGTTATGT
Found at i:36958568 original size:25 final size:25
Alignment explanation
Indices: 36958434--36959159 Score: 310
Period size: 25 Copynumber: 28.8 Consensus size: 25
36958424 AAGTTATACA
36958434 TTATGTAAGTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
* * *
36958461 TTGTGTAAGTTGTGTAAGTTGTGT-A-
1 TTATGTAAGTTATGT-A-TTATGTAAG
* * *
36958486 TTATGAAACTTATGTAAGTTATGT--C
1 TTATGTAAGTTATGT-A-TTATGTAAG
36958511 TTATGTAAGTTATGTAAATTATGT-A-
1 TTATGTAAGTTATGT--ATTATGTAAG
* *
36958536 TTACGTAAGTTATGTCTTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * *
36958561 TTATGTAAATTATGTAATACGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* *
36958586 TTATGTAAGTTGTGTATTATATAAG
1 TTATGTAAGTTATGTATTATGTAAG
*
36958611 TTATGTAAGTTCTGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * *
36958636 TTATGTAAGTTTTTGT-TTTTGTGTA-
1 TTATGTAAG-TTATGTATTATGT-AAG
* * * *
36958661 TTATATAACTTATTTAATTTATGTAGG
1 TTATGTAAGTTATGT-A-TTATGTAAG
* * *
36958688 GTATGTATTA-TTATGTAACTTATTTAAT
1 TTATGTA--AGTTATGT-A-TTATGTAAG
* *
36958716 TTATGTAGGGTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
* * **
36958743 TTGTGT-A-TTATTTACACATGTAAG
1 TTATGTAAGTTATGTA-TTATGTAAG
* *
36958767 TTGTGT-A-TTATGTAAGTTATGCAAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
*
36958792 TTATGT-A-TTAAGTAGATTATGTAAG
1 TTATGTAAGTTATGT--ATTATGTAAG
* *
36958817 TTATGTAAGTTGTGTATTATTTACA-
1 TTATGTAAGTTATGTATTATGTA-AG
* *
36958842 -CATGTAAGTTGTGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * *
36958866 TTATGCAAGTTATGTATTAAGTAGG
1 TTATGTAAGTTATGTATTATGTAAG
36958891 TTATGTAAGTTATGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* * *
36958916 TTATGTAAGTTTTTGT-TTTTGTGTA-
1 TTATGTAAG-TTATGTATTATGT-AAG
* * *
36958941 TTATGTAACTTATTTAATTTATGTAGG
1 TTATGTAAGTTATGT-A-TTATGTAAG
* * *
36958968 GTATGT-A-TTAT-TATGTAAGTTA-
1 TTATGTAAGTTATGTAT-TATGTAAG
* ** *
36958990 TTATGTAAGATAT-TATGTAACTTA-
1 TTATGTAAGTTATGTAT-TATGTAAG
36959014 TTATGTAAGTTATGTATTATGT-A-
1 TTATGTAAGTTATGTATTATGTAAG
* *
36959037 TTATATAAGTTATGTATTTATTTAAG
1 TTATGTAAGTTATGTA-TTATGTAAG
36959063 TTAT-T-A-TTATGTAAATTATGTAAG
1 TTATGTAAGTTATGT--ATTATGTAAG
* * *
36959087 CTATGTACCATTTAT-TAAGTTATGTATG
1 TTATGTA--AGTTATGT-A-TTATGTAAG
* * * *
36959115 -TATGTGACTTTTGTAAGTTATGTGAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
*
36959141 TTATGTAAATTATGTATTA
1 TTATGTAAGTTATGTATTA
36959160 AATTAAAATA
Statistics
Matches: 547, Mismatches: 108, Indels: 90
0.73 0.14 0.12
Matches are distributed among these distances:
22 6 0.01
23 35 0.06
24 95 0.17
25 260 0.48
26 35 0.06
27 82 0.15
28 29 0.05
29 5 0.01
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.48
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTATGTAAG
Found at i:36958618 original size:41 final size:41
Alignment explanation
Indices: 36958499--36958591 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
36958489 TGAAACTTAT
*
36958499 GTAAGTTATGTCTTATGTAAGTTATGTAAATTATGTATTAC
1 GTAAGTTATGTCTTATGTAAGTTATGTAAATTATGTAATAC
36958540 GTAAGTTATGTCTTATGTAAGTTATGTAAATTATGTAATAC
1 GTAAGTTATGTCTTATGTAAGTTATGTAAATTATGTAATAC
36958581 GTAAGTTATGT
1 GTAAGTTATGT
36958592 AAGTTGTGTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.32, C:0.04, G:0.18, T:0.45
Consensus pattern (41 bp):
GTAAGTTATGTCTTATGTAAGTTATGTAAATTATGTAATAC
Found at i:36958707 original size:37 final size:37
Alignment explanation
Indices: 36958659--36958731 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
36958649 TGTTTTTGTG
36958659 TATTATATAACTTATTTAATTTATGTAGGGTATGTAT
1 TATTATATAACTTATTTAATTTATGTAGGGTATGTAT
*
36958696 TATTATGTAACTTATTTAATTTATGTAGGGTATGTA
1 TATTATATAACTTATTTAATTTATGTAGGGTATGTA
36958732 AGTTATGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.32, C:0.03, G:0.15, T:0.51
Consensus pattern (37 bp):
TATTATATAACTTATTTAATTTATGTAGGGTATGTAT
Found at i:36958864 original size:16 final size:17
Alignment explanation
Indices: 36958843--36959156 Score: 112
Period size: 16 Copynumber: 18.8 Consensus size: 17
36958833 TTATTTACAC
*
36958843 ATGTAAGTTGTGTA-TT
1 ATGTAAGTTATGTAGTT
*
36958859 ATGTAAGTTATGCAAGTT
1 ATGTAAGTTATG-TAGTT
*
36958877 ATGT-A-TTAAGTAGGTT
1 ATGTAAGTTATGTA-GTT
36958893 ATGTAAGTTATGTA-TT
1 ATGTAAGTTATGTAGTT
36958909 ATGTAAGTTATGTAAGTTT
1 ATGTAAGTTATGT-AG-TT
* ** *
36958928 TTGT-TTTTGTGTA-TT
1 ATGTAAGTTATGTAGTT
* * *
36958943 ATGTAACTTATTTAATTT
1 ATGTAAGTTATGT-AGTT
* *
36958961 ATGTAGGGTATGTA-TT
1 ATGTAAGTTATGTAGTT
* *
36958977 AT-TATG-TAAGTTA-TT
1 ATGTAAGTTATG-TAGTT
* *
36958992 ATGTAAGATAT-TATGTA
1 ATGTAAGTTATGTA-GTT
36959009 ACT-T-A-TTATGTAAGTT
1 A-TGTAAGTTATGT-AGTT
36959025 ATGT-A-TTATGTA-TT
1 ATGTAAGTTATGTAGTT
* *
36959039 ATATAAGTTATGTATTT
1 ATGTAAGTTATGTAGTT
*
36959056 ATTTAAGTTAT-TA-TT
1 ATGTAAGTTATGTAGTT
* *
36959071 ATGTAAATTATGTAAGCT
1 ATGTAAGTTATGT-AGTT
*
36959089 ATGTACCATTTAT-TAAGTT
1 ATGTA--AGTTATGT-AGTT
* *
36959108 ATGTATG-TATGTGACTT
1 ATGTAAGTTATGT-AGTT
*
36959125 TTGTAAGTTATGTGAGTT
1 ATGTAAGTTATGT-AGTT
*
36959143 ATGTAAATTATGTA
1 ATGTAAGTTATGTA
36959157 TTAAATTAAA
Statistics
Matches: 227, Mismatches: 41, Indels: 59
0.69 0.13 0.18
Matches are distributed among these distances:
14 8 0.04
15 34 0.15
16 74 0.33
17 36 0.16
18 55 0.24
19 15 0.07
20 5 0.02
ACGTcount: A:0.31, C:0.02, G:0.18, T:0.49
Consensus pattern (17 bp):
ATGTAAGTTATGTAGTT
Found at i:36958992 original size:12 final size:12
Alignment explanation
Indices: 36958975--36959049 Score: 91
Period size: 12 Copynumber: 6.3 Consensus size: 12
36958965 AGGGTATGTA
36958975 TTATTATGTAAG
1 TTATTATGTAAG
36958987 TTATTATGTAAG
1 TTATTATGTAAG
* *
36958999 ATATTATGTAAC
1 TTATTATGTAAG
36959011 TTATTATGTAAG
1 TTATTATGTAAG
*
36959023 TTATGTAT-TATG
1 TTAT-TATGTAAG
*
36959035 -TATTATATAAG
1 TTATTATGTAAG
36959046 TTAT
1 TTAT
36959050 GTATTTATTT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
10 3 0.06
11 6 0.11
12 42 0.78
13 3 0.06
ACGTcount: A:0.35, C:0.01, G:0.13, T:0.51
Consensus pattern (12 bp):
TTATTATGTAAG
Found at i:36961355 original size:74 final size:73
Alignment explanation
Indices: 36961277--36961506 Score: 209
Period size: 74 Copynumber: 3.1 Consensus size: 73
36961267 AGTAAAAATG
* * *
36961277 CCACTAATAACACGGACAAAATGGCACTGTTATAAGATAACATTAATCATTTTTGTGGCACTTAA
1 CCACTAATAACACGAACAAAA-GGCACCGTTATAAGATAACATTAATCATTTTTGTGGCGCTTAA
36961342 CAATAAGCA
65 CAATAAGCA
** * * * * * ***
36961351 CCACTAATATTA-GTA-AAAACGCAGCCGTT-TAACA-CACATTAGAGTAAAACTTGTGGCGCTT
1 CCACTAATAACACGAACAAAAGGCA-CCGTTATAAGATAACATTA-A-TCATTTTTGTGGCGCTT
* *
36961412 AGAGTAA-AAACA
63 A-A-CAATAAGCA
* *
36961424 CCACTAATAACACGAACAAAACGGCACCGTTATAAGATAACATTAAACATTTTTGCGGCGCTTAA
1 CCACTAATAACACGAACAAAA-GGCACCGTTATAAGATAACATTAATCATTTTTGTGGCGCTTAA
36961489 CAATAAGCA
65 CAATAAGCA
36961498 CCACTAATA
1 CCACTAATA
36961507 TCAATACAAA
Statistics
Matches: 117, Mismatches: 28, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
70 6 0.05
71 8 0.07
72 21 0.18
73 19 0.16
74 28 0.24
75 21 0.18
76 8 0.07
77 6 0.05
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (73 bp):
CCACTAATAACACGAACAAAAGGCACCGTTATAAGATAACATTAATCATTTTTGTGGCGCTTAAC
AATAAGCA
Found at i:36961414 original size:147 final size:147
Alignment explanation
Indices: 36961190--36961601 Score: 689
Period size: 147 Copynumber: 2.8 Consensus size: 147
36961180 ATTTACAGCG
* *
36961190 CTTAACAATAAGCGCCACTAATATCAGTACAAACGTAGCCGTTTAACACACATTAGAGTAAAACT
1 CTTAACAATAAGCACCACTAATATCAGTACAAACGCAGCCGTTTAACACACATTAGAGTAAAACT
*
36961255 TGTGGCGCTTAGAGTAAAAATGCCACTAATAACACGGACAAAATGGCACTGTTATAAGATAACAT
66 TGTGGCGCTTAGAGTAAAAATGCCACTAATAACACGGACAAAATGGCACCGTTATAAGATAACAT
* *
36961320 TAATCATTTTTGTGGCA
131 TAAACATTTTTGCGGCA
* *
36961337 CTTAACAATAAGCACCACTAATATTAGTAAAAACGCAGCCGTTTAACACACATTAGAGTAAAACT
1 CTTAACAATAAGCACCACTAATATCAGTACAAACGCAGCCGTTTAACACACATTAGAGTAAAACT
** * *
36961402 TGTGGCGCTTAGAGTAAAAACACCACTAATAACACGAACAAAACGGCACCGTTATAAGATAACAT
66 TGTGGCGCTTAGAGTAAAAATGCCACTAATAACACGGACAAAATGGCACCGTTATAAGATAACAT
*
36961467 TAAACATTTTTGCGGCG
131 TAAACATTTTTGCGGCA
*
36961484 CTTAACAATAAGCACCACTAATATCAATACAAACGCAGCCGTTTAACACACATTAGAGTAAAACT
1 CTTAACAATAAGCACCACTAATATCAGTACAAACGCAGCCGTTTAACACACATTAGAGTAAAACT
* *
36961549 TATGGCGCTTAGAGTAAAAATGCCACTAATAACAAGGACAAAATGGCACCGTT
66 TGTGGCGCTTAGAGTAAAAATGCCACTAATAACACGGACAAAATGGCACCGTT
36961602 TCCTCAACTC
Statistics
Matches: 244, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
147 244 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (147 bp):
CTTAACAATAAGCACCACTAATATCAGTACAAACGCAGCCGTTTAACACACATTAGAGTAAAACT
TGTGGCGCTTAGAGTAAAAATGCCACTAATAACACGGACAAAATGGCACCGTTATAAGATAACAT
TAAACATTTTTGCGGCA
Found at i:36961430 original size:73 final size:73
Alignment explanation
Indices: 36961204--36961579 Score: 261
Period size: 73 Copynumber: 5.1 Consensus size: 73
36961194 ACAATAAGCG
* *
36961204 CCACTAATATCAGTACAAACGTAGCCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAG
1 CCACTAATATCAGTAAAAACGCAGCCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAG
**
36961269 TAAAAATG
66 TAAAAACA
* * * * * * * *** *
36961277 CCACTAATAACACGGACAAAATGGCA-CTGTTATAAGATAACATTA-A-TCATTTTTGTGGCACT
1 CCACTAATATCA-GTA-AAAA-CGCAGCCGTT-TAACA-CACATTAGAGTAAAACTTGTGGCGCT
* *
36961339 TA-A-CAATAAGCA
61 TAGAGTAA-AAACA
*
36961351 CCACTAATATTAGTAAAAACGCAGCCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAG
1 CCACTAATATCAGTAAAAACGCAGCCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAG
36961416 TAAAAACA
66 TAAAAACA
* * * * *** *
36961424 CCACTAATAACACGAACAAAACGGCA-CCGTTATAAGATAACATTA-A--ACATTTTTGCGGCGC
1 CCACTAATATCA-GTA-AAAAC-GCAGCCGTT-TAACA-CACATTAGAGTA-AAACTTGTGGCGC
* *
36961485 TTA-A-CAATAAGCA
60 TTAGAGTAA-AAACA
* * *
36961498 CCACTAATATCAATACAAACGCAGCCGTTTAACACACATTAGAGTAAAACTTATGGCGCTTAGAG
1 CCACTAATATCAGTAAAAACGCAGCCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAG
**
36961563 TAAAAATG
66 TAAAAACA
36961571 CCACTAATA
1 CCACTAATA
36961580 ACAAGGACAA
Statistics
Matches: 222, Mismatches: 57, Indels: 48
0.68 0.17 0.15
Matches are distributed among these distances:
70 12 0.05
71 16 0.07
72 41 0.18
73 46 0.21
74 38 0.17
75 42 0.19
76 15 0.07
77 12 0.05
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (73 bp):
CCACTAATATCAGTAAAAACGCAGCCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAG
TAAAAACA
Found at i:36961454 original size:75 final size:74
Alignment explanation
Indices: 36961228--36961602 Score: 256
Period size: 75 Copynumber: 5.1 Consensus size: 74
36961218 ACAAACGTAG
** *
36961228 CCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAGTAAAAATGCCACTAATAACACGGA
1 CCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAGTAAAAACACCACTAATAACA-GAA
*
36961293 CAAAATGGCA
65 CAAAACGGCA
* * * * *** * * * **
36961303 CTGTTATAAGATAACATTA-A-TCATTTTTGTGGCACTTA-A-CAATAAGCACCACTAATATTAG
1 CCGTT-TAACA-CACATTAGAGTAAAACTTGTGGCGCTTAGAGTAA-AAACACCACTAATAACAG
*
36961364 TA-AAAAC-GCA
63 AACAAAACGGCA
36961374 GCCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAGTAAAAACACCACTAATAACACGA
1 -CCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAGTAAAAACACCACTAATAACA-GA
36961439 ACAAAACGGCA
64 ACAAAACGGCA
* * *** * * * *
36961450 CCGTTATAAGATAACATTA-A--ACATTTTTGCGGCGCTTA-A-CAATAAGCACCACTAATATCA
1 CCGTT-TAACA-CACATTAGAGTA-AAACTTGTGGCGCTTAGAGTAA-AAACACCACTAATAACA
36961510 -ATAC-AAAC-GCA
62 GA-ACAAAACGGCA
* ** *
36961521 GCCGTTTAACACACATTAGAGTAAAACTTATGGCGCTTAGAGTAAAAATGCCACTAATAACAAGG
1 -CCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAGTAAAAACACCACTAATAAC-AGA
*
36961586 ACAAAATGGCA
64 ACAAAACGGCA
36961597 CCGTTT
1 CCGTTT
36961603 CCTCAACTCG
Statistics
Matches: 222, Mismatches: 52, Indels: 52
0.68 0.16 0.16
Matches are distributed among these distances:
70 12 0.05
71 16 0.07
72 42 0.19
73 37 0.17
74 39 0.18
75 48 0.22
76 16 0.07
77 12 0.05
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (74 bp):
CCGTTTAACACACATTAGAGTAAAACTTGTGGCGCTTAGAGTAAAAACACCACTAATAACAGAAC
AAAACGGCA
Found at i:36961556 original size:72 final size:72
Alignment explanation
Indices: 36961187--36961559 Score: 271
Period size: 72 Copynumber: 5.1 Consensus size: 72
36961177 ATCATTTACA
* *
36961187 GCGCTTAACAATAAGCGCCACTAATATCAGTACAAACGTAGCCGTTTAACACACATTAGAGTAAA
1 GCGCTTAACAATAAGCACCACTAATATCAGTACAAACGCAGCCGTTTAACACACATTAGAGTAAA
36961252 ACTTGTG
66 ACTTGTG
* * * * * * * *
36961259 GCGCTTAGAGTAAAAATG--CCACTAATAACACGGACAAAATGGCA-CTGTTATAAGATAACATT
1 GCGCTTA-A-CAATAA-GCACCACTAATATCA-GTAC-AAA-CGCAGCCGTT-TAACA-CACATT
* ***
36961321 A-A-TCATTTTTGTG
58 AGAGTAAAACTTGTG
* * *
36961334 GCACTTAACAATAAGCACCACTAATATTAGTAAAAACGCAGCCGTTTAACACACATTAGAGTAAA
1 GCGCTTAACAATAAGCACCACTAATATCAGTACAAACGCAGCCGTTTAACACACATTAGAGTAAA
36961399 ACTTGTG
66 ACTTGTG
* * * * * *
36961406 GCGCTTAGAGTAA-AAACACCACTAATAACACGAACAAAACGGCA-CCGTTATAAGATAACATTA
1 GCGCTTA-A-CAATAAGCACCACTAATATCA-GTAC-AAAC-GCAGCCGTT-TAACA-CACATTA
*** *
36961469 -A--ACATTTTTGCG
59 GAGTA-AAACTTGTG
*
36961481 GCGCTTAACAATAAGCACCACTAATATCAATACAAACGCAGCCGTTTAACACACATTAGAGTAAA
1 GCGCTTAACAATAAGCACCACTAATATCAGTACAAACGCAGCCGTTTAACACACATTAGAGTAAA
*
36961546 ACTTATG
66 ACTTGTG
36961553 GCGCTTA
1 GCGCTTA
36961560 GAGTAAAAAT
Statistics
Matches: 222, Mismatches: 53, Indels: 52
0.68 0.16 0.16
Matches are distributed among these distances:
70 12 0.05
71 16 0.07
72 48 0.22
73 38 0.17
74 39 0.18
75 42 0.19
76 15 0.07
77 12 0.05
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (72 bp):
GCGCTTAACAATAAGCACCACTAATATCAGTACAAACGCAGCCGTTTAACACACATTAGAGTAAA
ACTTGTG
Found at i:36961846 original size:115 final size:115
Alignment explanation
Indices: 36961631--36961862 Score: 356
Period size: 115 Copynumber: 2.0 Consensus size: 115
36961621 ATTTGTGGCA
*
36961631 TTTTAAAATGCGCCACTAAAAGAAAACAACAAAACCGCACCGTCTTTGTTACAGTTAAAGGAAAT
1 TTTTAAAATGCGCCACAAAAAGAAAACAACAAAACCGCACCGTCTTTGTTACAGTTAAAGGAAAT
** *
36961696 TTGCGGCGTTTCTTCGTAAAACGCCAGTAAGATATCACCTTTAGCGGCGT
66 TTGCGGCGTTTCTTCACAAAACACCAGTAAGATATCACCTTTAGCGGCGT
* * * *
36961746 TTTTCAAATGCGCCACAAAAAGCAAACAACAAAACGGCACCGTCTTTGTTACGGTTAAAGGAAAT
1 TTTTAAAATGCGCCACAAAAAGAAAACAACAAAACCGCACCGTCTTTGTTACAGTTAAAGGAAAT
* * * *
36961811 TTGCGGTGTTTCTTTACAAAACACCGGTAATATATCACCTTTAGCGGCGT
66 TTGCGGCGTTTCTTCACAAAACACCAGTAAGATATCACCTTTAGCGGCGT
36961861 TT
1 TT
36961863 GTTCTGAACC
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 105 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (115 bp):
TTTTAAAATGCGCCACAAAAAGAAAACAACAAAACCGCACCGTCTTTGTTACAGTTAAAGGAAAT
TTGCGGCGTTTCTTCACAAAACACCAGTAAGATATCACCTTTAGCGGCGT
Found at i:36962701 original size:50 final size:50
Alignment explanation
Indices: 36962554--36962798 Score: 228
Period size: 50 Copynumber: 4.8 Consensus size: 50
36962544 TAACAACACA
* * ** * *
36962554 CCAAAGCCATGTCCCAGACATGGTCTTACCTGGGATGTTTCATGTAC--TG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGGTG
* * * * ** *
36962603 CCAATGCCATATCCCAGATATGGTCTTATATGAGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
*
36962653 CTC-ATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTG
1 C-CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
* *
36962703 CCAACGCCATGTCCCTA-ACATGGCCTTACATGGGACCTCTCATGATCTCAAGGATG
1 CCAATGCCATGTCCC-AGACATGGTCTTACATGGGACCTCTC---ATCTC--GG-TG
*
36962759 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36962799 TTACCCAAAT
Statistics
Matches: 160, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
48 1 0.01
49 36 0.22
50 77 0.48
51 2 0.01
53 4 0.03
55 3 0.02
56 37 0.23
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
Found at i:36970263 original size:56 final size:51
Alignment explanation
Indices: 36969998--36970293 Score: 282
Period size: 50 Copynumber: 5.8 Consensus size: 51
36969988 AATAATAACA
* ** *
36969998 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGT-TC-ATGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCT-CGG
* * * * * * ** *
36970046 TACCAATGTCATATCCTAGATATGGTCTTACATGGGAGTTCTC-ATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
* * * * **
36970096 TGCCCATGCCATGTTCTAGACATGGTCTTACGGGGGACCTCTC-ATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
36970146 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCG-TCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
*
36970196 TGCCAACGCCATGTCCCTGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--GATCTC--GG
* * *
36970251 ATGCCAATGCCATGTCTCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36970294 TTACCCAAAT
Statistics
Matches: 207, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
48 33 0.16
49 5 0.02
50 124 0.60
52 1 0.00
53 4 0.02
55 2 0.01
56 38 0.18
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.28
Consensus pattern (51 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGATCTCGG
Found at i:36971948 original size:23 final size:24
Alignment explanation
Indices: 36971909--36971966 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 24
36971899 CTCCAAAAGT
36971909 TACCAA-ATTAGAAGCTAAGC-A-CA
1 TACCAACATTAG--GCTAAGCTACCA
36971932 TACCAAGCATTAGGCTAAGCTACCA
1 TACCAA-CATTAGGCTAAGCTACCA
36971957 TACCAACATT
1 TACCAACATT
36971967 GCCTCAACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
23 13 0.42
24 5 0.16
25 13 0.42
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.21
Consensus pattern (24 bp):
TACCAACATTAGGCTAAGCTACCA
Found at i:36972244 original size:7 final size:7
Alignment explanation
Indices: 36972229--36972266 Score: 67
Period size: 7 Copynumber: 5.3 Consensus size: 7
36972219 TTAAATCTTA
36972229 ATGTAAAT
1 ATGT-AAT
36972237 ATGTAAT
1 ATGTAAT
36972244 ATGTAAT
1 ATGTAAT
36972251 ATGTAAT
1 ATGTAAT
36972258 ATGTAAT
1 ATGTAAT
36972265 AT
1 AT
36972267 ACAATAGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 26 0.87
8 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (7 bp):
ATGTAAT
Found at i:36972272 original size:21 final size:22
Alignment explanation
Indices: 36972229--36972272 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
36972219 TTAAATCTTA
**
36972229 ATGTAAATATGTAATATGTAAT
1 ATGTAAATATGTAATATACAAT
36972251 ATGT-AATATGTAATATACAAT
1 ATGTAAATATGTAATATACAAT
36972272 A
1 A
36972273 GAGAAATGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (22 bp):
ATGTAAATATGTAATATACAAT
Found at i:36973654 original size:14 final size:14
Alignment explanation
Indices: 36973635--36973665 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
36973625 TATCTTCTTC
36973635 TTTTATTTCTTTCT
1 TTTTATTTCTTTCT
36973649 TTTTATTTCTTTCT
1 TTTTATTTCTTTCT
36973663 TTT
1 TTT
36973666 CTAATTTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTTCTTTCT
Found at i:36976929 original size:6 final size:6
Alignment explanation
Indices: 36976914--36976947 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
36976904 ATTTTAAATC
*
36976914 TTTTAT TTTTAC TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
36976948 TCTTTCCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:36976930 original size:12 final size:12
Alignment explanation
Indices: 36976913--36976952 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
36976903 GATTTTAAAT
36976913 CTTTTATTTTTA
1 CTTTTATTTTTA
36976925 CTTTTATTTTTA
1 CTTTTATTTTTA
* *
36976937 TTTTTATTTTTT
1 CTTTTATTTTTA
36976949 CTTT
1 CTTT
36976953 CCAAAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (12 bp):
CTTTTATTTTTA
Found at i:36988062 original size:44 final size:44
Alignment explanation
Indices: 36988001--36988323 Score: 318
Period size: 44 Copynumber: 7.4 Consensus size: 44
36987991 TCTTATCCCC
* *
36988001 TTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCC
1 TTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCT
* ** * *
36988045 ATGAAGTTG-ACGTGGAGCAGA-TTAA-AATCACAGATCTTATCTCT
1 TTGAAGTTGCA-GTGGAGCAGACGAAAGAAAC-CA-ATCCTATCTCT
*
36988089 TTGAAGTTGCAGTGGAGCAGACGAAAGACACCAATCCTATCTCT
1 TTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCT
*
36988133 TTGAAGTTGCAGTGGAGCAGACGAAAGACACCAATCCTATCTCT
1 TTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCT
* ** * *** *
36988177 TTGAAGTTGCAGTGGAGCGGATTAAA-ATCATGGATCTTATCTCT
1 TTGAAGTTGCAGTGGAGCAGACGAAAGA-AACCAATCCTATCTCT
* ** * * * * *
36988221 TTGAAGTTGCAGTCGAGC--A-GATTGTATCCAGTCTTATCTCC
1 TTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCT
*
36988262 CTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCT
1 TTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCT
*
36988306 CTGAAGTTGCAGTGGAGC
1 TTGAAGTTGCAGTGGAGC
36988324 GGATTAAAAT
Statistics
Matches: 228, Mismatches: 40, Indels: 22
0.79 0.14 0.08
Matches are distributed among these distances:
41 26 0.11
42 4 0.02
43 7 0.03
44 184 0.81
45 5 0.02
46 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
TTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCT
Found at i:36988096 original size:88 final size:88
Alignment explanation
Indices: 36987991--36988347 Score: 388
Period size: 88 Copynumber: 4.1 Consensus size: 88
36987981 GAAAAGCAAG
* *
36987991 TCTTATCCCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCATGAAGTTG-A
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCTTGAAGTTGCA
36988055 CGTGGAGCAGATTAAAATCACAGA
66 -GTGGAGCAGATTAAAATCACAGA
* * * *
36988079 TCTTATCTCTTTGAAGTTGCAGTGGAGCAGACGAAAGACACCAATCCTATCTCTTTGAAGTTGCA
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCTTGAAGTTGCA
**
36988144 GTGGAGCAGACGAAAGA-CACCA-A
66 GTGGAGCAGATTAAA-ATCA-CAGA
* * * * ** *** * *
36988167 TCCTATCTCTTTGAAGTTGCAGTGGAGCGGATTAAAA-TCATGGATCTTATCTCTTTGAAGTTGC
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGA-CAAAAGAAACCAATCCTATCTCCTTGAAGTTGC
* **
36988231 AGTCGAGCAGATT-GTATC-CAG-
65 AGTGGAGCAGATTAAAATCACAGA
* *
36988252 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCT-CTCTGAAGTTGC
1 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCT-TGAAGTTGC
*
36988316 AGTGGAGCGGATTAAAATCACAGA
65 AGTGGAGCAGATTAAAATCACAGA
36988340 TCTTATCT
1 TCTTATCT
36988348 ATTCTAAGTT
Statistics
Matches: 219, Mismatches: 39, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
84 4 0.02
85 58 0.26
86 4 0.02
87 4 0.02
88 142 0.65
89 7 0.03
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (88 bp):
TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCTTGAAGTTGCA
GTGGAGCAGATTAAAATCACAGA
Found at i:36988152 original size:132 final size:128
Alignment explanation
Indices: 36987994--36988347 Score: 487
Period size: 132 Copynumber: 2.7 Consensus size: 128
36987984 AAGCAAGTCT
* *
36987994 TATCCCCTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCATGAAGTTG-ACGT
1 TATCTCCTTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCC-TGAAGTTGCA-GT
* *
36988058 GGAGCAGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGTGGAGCAGA-CGAAAGACACCA
64 GGAGCGGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGTCGAGCAGATCG---GA-ACCA
36988122 ATCC
125 ATCC
* * *
36988126 TATCTCTTTGAAGTTGCAGTGGAGCAGACGAAAGACACCAATCCTATCTCTTTGAAGTTGCAGTG
1 TATCTCCTTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTC-CTGAAGTTGCAGTG
** * * * * *
36988191 GAGCGGATTAAAATCATGGATCTTATCTCTTTGAAGTTGCAGTCGAGCAGATTGTATCCAGTCT
65 GAGCGGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGTCGAGCAGATCGGAACCAATCC
*
36988255 TATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCTCTGAAGTTGCAGTG
1 TATCTCCTTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTC-CTGAAGTTGCAGTG
36988320 GAGCGGATTAAAATCACAGATCTTATCT
65 GAGCGGATTAAAATCACAGATCTTATCT
36988348 ATTCTAAGTT
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
129 92 0.46
130 1 0.01
132 104 0.52
133 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (128 bp):
TATCTCCTTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCCTGAAGTTGCAGTGG
AGCGGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGTCGAGCAGATCGGAACCAATCC
Found at i:36988403 original size:129 final size:129
Alignment explanation
Indices: 36988000--36988392 Score: 456
Period size: 129 Copynumber: 3.0 Consensus size: 129
36987990 GTCTTATCCC
*
36988000 CTTGAAGTTGCAGTGGAGCAGACAAAAGAAACCAATCCTATCTC-CATGAAGTTG-ACGTGGAGC
1 CTTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCTC-TGAAGTTGCA-GTGGAGC
* * * * *
36988063 AGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGTGGAGCAG-ACGAAAGACACCAATCCT
64 GGATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGTTCG-AA-TCA--AATCTT
*
36988127 A-TCT
125 ATTTT
* *
36988131 CTTTGAAGTTGCAGTGGAGCAGACGAAAGACACCAATCCTATCTCTTTGAAGTTGCAGTGGAGCG
1 C-TTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCTCTGAAGTTGCAGTGGAGCG
** * * * * *
36988196 GATTAAAATCATGGATCTTATCTCTTTGAAGTTGCAGTCGAGCAGATT-GTATCCAGTCTTATCT
65 GATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAG-TTCGAATCAAATCTTATTT
*
36988260 C
129 T
*
36988261 CCTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCTCTGAAGTTGCAGTGGAGCGG
1 CTTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCTCTGAAGTTGCAGTGGAGCGG
* * * * *
36988326 ATTAAAATCACAGATCTTATCTATTCT-AAGTTACAGTAGATCAGTTCGCATCAAATTTTATTTT
66 ATTAAAATCACAGATCTTATCTCTT-TGAAGTTGCAGTAGAGCAGTTCGAATCAAATCTTATTTT
36988390 CTT
1 CTT
36988393 AAAAATGCAG
Statistics
Matches: 222, Mismatches: 32, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
128 2 0.01
129 115 0.52
130 2 0.01
131 2 0.01
132 99 0.45
133 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (129 bp):
CTTGAAGTTGCAGTGGAGCAGACGAAAGAAACCAATCCTATCTCTCTGAAGTTGCAGTGGAGCGG
ATTAAAATCACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGTTCGAATCAAATCTTATTTT
Found at i:36988636 original size:44 final size:44
Alignment explanation
Indices: 36988550--36988688 Score: 199
Period size: 44 Copynumber: 3.1 Consensus size: 44
36988540 TTATCTCCCT
* *
36988550 GTGGAACAAATTGAAGATAACAAACCTTATCTCCCTGAAGTTGTA
1 GTGGAGCAAATTGAAGAT-ACAAATCTTATCTCCCTGAAGTTGTA
*
36988595 GTGGAGCAAATTGAAGATACCAATCTTATCTCCCTGAAGTTGCT-
1 GTGGAGCAAATTGAAGATACAAATCTTATCTCCCTGAAGTTG-TA
* * *
36988639 GTGGAGCAGATTGAAGCTACTAATCTTATCTCCCTGAAGTTGTA
1 GTGGAGCAAATTGAAGATACAAATCTTATCTCCCTGAAGTTGTA
36988683 GTGGAG
1 GTGGAG
36988689 TGGATTAAAA
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
43 1 0.01
44 67 0.78
45 18 0.21
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
GTGGAGCAAATTGAAGATACAAATCTTATCTCCCTGAAGTTGTA
Found at i:36988708 original size:44 final size:42
Alignment explanation
Indices: 36988575--36988711 Score: 134
Period size: 44 Copynumber: 3.1 Consensus size: 42
36988565 GATAACAAAC
* *
36988575 CTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAA-GATACCAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAACGAT---AAT
* *
36988619 CTTATCTCCCTGAAGTTGCT-GTGGAGCAGATTGAAGCTACTAAT
1 CTTATCTCCCTGAAGTTG-TAGTGGAGCAGATT-AAACGA-TAAT
**
36988663 CTTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACGATGAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATT-AAACGAT-AAT
36988707 CTTAT
1 CTTAT
36988712 ACCTTTAAAG
Statistics
Matches: 78, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
43 2 0.03
44 72 0.92
45 2 0.03
46 1 0.01
47 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (42 bp):
CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAACGATAAT
Found at i:36989294 original size:15 final size:15
Alignment explanation
Indices: 36989251--36989294 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
36989241 CAAATACCCA
36989251 CTAAACCCAATTAAC
1 CTAAACCCAATTAAC
*
36989266 CT-AGCCC-A--AAC
1 CTAAACCCAATTAAC
36989277 CTAAACCCAATTAAC
1 CTAAACCCAATTAAC
36989292 CTA
1 CTA
36989295 GCCCGACTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 8
0.70 0.06 0.24
Matches are distributed among these distances:
11 5 0.22
12 4 0.17
13 2 0.09
14 4 0.17
15 8 0.35
ACGTcount: A:0.43, C:0.36, G:0.02, T:0.18
Consensus pattern (15 bp):
CTAAACCCAATTAAC
Found at i:36999061 original size:13 final size:13
Alignment explanation
Indices: 36999043--36999067 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36999033 TAATGGTATA
36999043 TTGAATCCATGAC
1 TTGAATCCATGAC
36999056 TTGAATCCATGA
1 TTGAATCCATGA
36999068 AAAATTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:36999644 original size:27 final size:26
Alignment explanation
Indices: 36999613--36999790 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
36999603 TAAATTGTAC
36999613 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
36999640 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
36999666 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
36999694 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
36999722 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
36999749 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
36999776 AGCACTGAGGGTGCG
1 AGCACTAAGTGTGCG
36999791 GACTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:36999729 original size:82 final size:81
Alignment explanation
Indices: 36999614--36999769 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
36999604 AAATTGTACA
* *
36999614 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36999678 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
36999695 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36999760 TGCGAGTTGA
65 TGCGAATTGA
36999770 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37005460 original size:16 final size:17
Alignment explanation
Indices: 37005439--37005472 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
37005429 GTGATAGATC
37005439 TCCGA-CAAGCTTCCAA
1 TCCGACCAAGCTTCCAA
37005455 TCCGACCAAGCTTCCAA
1 TCCGACCAAGCTTCCAA
37005472 T
1 T
37005473 AATCTGTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.29, C:0.38, G:0.12, T:0.21
Consensus pattern (17 bp):
TCCGACCAAGCTTCCAA
Found at i:37006475 original size:39 final size:40
Alignment explanation
Indices: 37006368--37006560 Score: 232
Period size: 40 Copynumber: 4.9 Consensus size: 40
37006358 TCATCACTAG
* *
37006368 ACCG-AACACACCAGACAGAAGCTCATAAGAGCTGATCCA
1 ACCGAAACACGCCAAACAGAAGCTCATAAGAGCTGATCCA
* * *
37006407 ACCGAAATACACCAAACAGAAGCTCATAAGAGCTGGTCCA
1 ACCGAAACACGCCAAACAGAAGCTCATAAGAGCTGATCCA
* * *
37006447 CCCGAAACATGCC-AACAGAAGTTCATAAGAGCTGATCCA
1 ACCGAAACACGCCAAACAGAAGCTCATAAGAGCTGATCCA
* * *
37006486 ACCGAAATACGCCAAACAGAAGCTCATAAGAGTTGGTCC-
1 ACCGAAACACGCCAAACAGAAGCTCATAAGAGCTGATCCA
* *
37006525 ACCTAAAACACGCC-AACAGAAGCTCGTAAGAGCTGA
1 ACC-GAAACACGCCAAACAGAAGCTCATAAGAGCTGA
37006561 ACAGAAGCTC
Statistics
Matches: 131, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 60 0.46
40 71 0.54
ACGTcount: A:0.40, C:0.28, G:0.19, T:0.13
Consensus pattern (40 bp):
ACCGAAACACGCCAAACAGAAGCTCATAAGAGCTGATCCA
Found at i:37006501 original size:79 final size:79
Alignment explanation
Indices: 37006372--37006560 Score: 297
Period size: 79 Copynumber: 2.4 Consensus size: 79
37006362 CACTAGACCG
*
37006372 AACACACCAGACAGAAGCTCATAAGAGCTGATCCAACCGAAATACACCAAACAGAAGCTCATAAG
1 AACACGCCA-ACAGAAGCTCATAAGAGCTGATCCAACCGAAATACACCAAACAGAAGCTCATAAG
*
37006437 AGCTGGTCCACCCGA
65 AGCTGGTCCACCCAA
* * *
37006452 AACATGCCAACAGAAGTTCATAAGAGCTGATCCAACCGAAATACGCCAAACAGAAGCTCATAAGA
1 AACACGCCAACAGAAGCTCATAAGAGCTGATCCAACCGAAATACACCAAACAGAAGCTCATAAGA
* *
37006517 GTTGGTCCACCTAA
66 GCTGGTCCACCCAA
*
37006531 AACACGCCAACAGAAGCTCGTAAGAGCTGA
1 AACACGCCAACAGAAGCTCATAAGAGCTGA
37006561 ACAGAAGCTC
Statistics
Matches: 99, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 92 0.93
80 7 0.07
ACGTcount: A:0.41, C:0.28, G:0.19, T:0.13
Consensus pattern (79 bp):
AACACGCCAACAGAAGCTCATAAGAGCTGATCCAACCGAAATACACCAAACAGAAGCTCATAAGA
GCTGGTCCACCCAA
Found at i:37006565 original size:21 final size:21
Alignment explanation
Indices: 37006539--37006580 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
37006529 AAAACACGCC
*
37006539 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
37006560 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
37006581 TTCCATTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.14
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:37039985 original size:83 final size:83
Alignment explanation
Indices: 37039846--37040012 Score: 325
Period size: 83 Copynumber: 2.0 Consensus size: 83
37039836 GCAATGTGGT
37039846 TAGACTTTGATCGATTATTACTGTGGTCCTCATGAAATTTTATGGGTTTAGTTTTCTAGCACTTT
1 TAGACTTTGATCGATTATTACTGTGGTCCTCATGAAATTTTATGGGTTTAGTTTTCTAGCACTTT
*
37039911 TGATAGATGTTATAATTA
66 TGATAGATGTTACAATTA
37039929 TAGACTTTGATCGATTATTACTGTGGTCCTCATGAAATTTTATGGGTTTAGTTTTCTAGCACTTT
1 TAGACTTTGATCGATTATTACTGTGGTCCTCATGAAATTTTATGGGTTTAGTTTTCTAGCACTTT
37039994 TGATAGATGTTACAATTA
66 TGATAGATGTTACAATTA
37040012 T
1 T
37040013 TTCATTGGTA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.25, C:0.11, G:0.18, T:0.46
Consensus pattern (83 bp):
TAGACTTTGATCGATTATTACTGTGGTCCTCATGAAATTTTATGGGTTTAGTTTTCTAGCACTTT
TGATAGATGTTACAATTA
Found at i:37044371 original size:19 final size:20
Alignment explanation
Indices: 37044340--37044399 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
37044330 TAAAAAACAA
*
37044340 ATTTTAGAATTTTTATAAA-T
1 ATTTTA-AATTTTTAAAAATT
37044360 ATTTTAAA-TTTTAAAAATT
1 ATTTTAAATTTTTAAAAATT
* *
37044379 ATTTTCAATTTTTGAAAATT
1 ATTTTAAATTTTTAAAAATT
37044399 A
1 A
37044400 ATTTGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 8 0.23
19 10 0.29
20 17 0.49
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (20 bp):
ATTTTAAATTTTTAAAAATT
Found at i:37044396 original size:20 final size:18
Alignment explanation
Indices: 37044347--37044410 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 18
37044337 CAAATTTTAG
37044347 AATTTTTATAAA-TATTTT
1 AATTTTTA-AAATTATTTT
*
37044365 AAATTTTAAAAATTATTTT
1 -AATTTTTAAAATTATTTT
*
37044384 CAATTTTTGAAAATTAATTT
1 -AATTTTT-AAAATTATTTT
*
37044404 GATTTTT
1 AATTTTT
37044411 TTTTGTAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
18 3 0.08
19 25 0.66
20 10 0.26
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (18 bp):
AATTTTTAAAATTATTTT
Found at i:37045179 original size:3 final size:3
Alignment explanation
Indices: 37045171--37045202 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
37045161 ATTCGATCCT
37045171 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
37045203 TAATTAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:37045974 original size:10 final size:10
Alignment explanation
Indices: 37045945--37045980 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
37045935 AAGAGACATG
37045945 AAAATAAATA
1 AAAATAAATA
37045955 AAAATGAAATA
1 AAAAT-AAATA
*
37045966 AGAATAAATA
1 AAAATAAATA
37045976 AAAAT
1 AAAAT
37045981 TATACAAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (10 bp):
AAAATAAATA
Found at i:37046812 original size:147 final size:147
Alignment explanation
Indices: 37046583--37046851 Score: 378
Period size: 147 Copynumber: 1.8 Consensus size: 147
37046573 ACTCAAAAAA
* ** * * *
37046583 TTATTTCGAAATAGTTAAAAAAAATCAAAACTTTGTTTTAACATTTTAAACTTTCCTTTAAAATG
1 TTATTTCGAAATAGTTAAAAAAAATAAAAAAATTGTTTTAAAATTTTAAACTTTCCCTTAAAAAG
** * *
37046648 ACTTGAAAAACAGATTTTTATTTTTCAAAATCTGAACTTTCTC-CTTTTAAAAAAAACTATATTT
66 ACTAAAAAAACAGATTTTTATTTTTCAAAATCTAAACATTCTCTCTTTTAAAAAAAACTATATTT
37046712 CTTAAAGATTAAAAATT
131 CTTAAAGATTAAAAATT
* *
37046729 TTATTTTGAAATAGTTGAAAAAAATAAAAAAATTGTTTTAAAAATTTTAAACTTTCCCTTAAAAA
1 TTATTTCGAAATAGTTAAAAAAAATAAAAAAATTGTTTT-AAAATTTTAAACTTTCCCTTAAAAA
* * * *
37046794 GACTAAAAAAACATATTTTTATTTTTTAAAATCTAAACATTCTCTTTTTTTAAAAAAA
65 GACTAAAAAAACAGATTTTTATTTTTCAAAATCTAAACATTCTCTCTTTTAAAAAAAA
37046852 TCAAAACTTT
Statistics
Matches: 105, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
146 34 0.32
147 60 0.57
148 11 0.10
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (147 bp):
TTATTTCGAAATAGTTAAAAAAAATAAAAAAATTGTTTTAAAATTTTAAACTTTCCCTTAAAAAG
ACTAAAAAAACAGATTTTTATTTTTCAAAATCTAAACATTCTCTCTTTTAAAAAAAACTATATTT
CTTAAAGATTAAAAATT
Found at i:37047718 original size:42 final size:42
Alignment explanation
Indices: 37047671--37048158 Score: 618
Period size: 42 Copynumber: 11.6 Consensus size: 42
37047661 CTTCATATAC
* **
37047671 AATGCAATGAAAATTAAACAGACCTCCACACCTGGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
* ** *
37047713 AATGCAATGAAAAGCAAATGGACCTCCACACCTAAGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
* ** *
37047755 AATGCAATGAAAAGCAAATGGACCTCCACACCTAAGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
* * *
37047797 AATGCAATAAAAAGCAAATAGACCTCCACACCTGGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
* *
37047839 AATGCAATGAAAAGTGAATGGACCTCCACACCTAGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
* * * *
37047881 AATGCAATGAAAAGTGAATGGACCTCCATACCTGCGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
* *
37047923 AATGCAATGAAAAGTAAACGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
* * *
37047965 AATGCAACGAAAAGTAAATGGACCTCCACACCTGGATATCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
* * **
37048007 AATGCAATGAAAAGTAAATAGACCTCTACA-CTTAGTCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGT-CTCTA
** * *
37048049 AATGCAATGAAAAGTAAACAGACCTCCACACTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
* * * *
37048091 AATGCAACGAAAAGTAAATGGACCTCCACACCTAGATCTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
*
37048133 AATGCAATGAAAAGTAAATGGGCCTC
1 AATGCAATGAAAAGTAAATGGACCTC
37048159 TAAATGCAAT
Statistics
Matches: 391, Mismatches: 53, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
41 3 0.01
42 386 0.99
43 2 0.01
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGTCTCTA
Found at i:37047901 original size:126 final size:126
Alignment explanation
Indices: 37047671--37048158 Score: 710
Period size: 126 Copynumber: 3.9 Consensus size: 126
37047661 CTTCATATAC
* * * *
37047671 AATGCAATGAAAATTAAACAGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGCAAATGGAC
1 AATGCAATGAAAAGTAAACAGACCTCCACACCTGGGCCTCTAAATGCAACGAAAAGTAAATGGAC
* * *
37047736 CTCCACACCTAAGCCTCTAAATGCAATGAAAAGCAAATGGACCTCCACACCTAAGCCTCTA
66 CTCCACACCTAGGTCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTAAGCCTCTA
* * * * * *
37047797 AATGCAATAAAAAGCAAATAGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGAC
1 AATGCAATGAAAAGTAAACAGACCTCCACACCTGGGCCTCTAAATGCAACGAAAAGTAAATGGAC
* * **
37047862 CTCCACACCTAGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCATACCTGCGCCTCTA
66 CTCCACACCTAGGTCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTAAGCCTCTA
*
37047923 AATGCAATGAAAAGTAAACGGACCTCCACACCTGGGCCTCTAAATGCAACGAAAAGTAAATGGAC
1 AATGCAATGAAAAGTAAACAGACCTCCACACCTGGGCCTCTAAATGCAACGAAAAGTAAATGGAC
* * * *
37047988 CTCCACACCT-GGATATCTAAATGCAATGAAAAGTAAATAGACCTCTACA-CTTAGTCCTCTA
66 CTCCACACCTAGG-TCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTAAG-CCTCTA
*
37048049 AATGCAATGAAAAGTAAACAGACCTCCACACTTGGGCCTCTAAATGCAACGAAAAGTAAATGGAC
1 AATGCAATGAAAAGTAAACAGACCTCCACACCTGGGCCTCTAAATGCAACGAAAAGTAAATGGAC
* * *
37048114 CTCCACACCTAGATCTTTAAATGCAATGAAAAGTAAATGGGCCTC
66 CTCCACACCTAGGTCTCTAAATGCAATGAAAAGTAAATGGACCTC
37048159 TAAATGCAAT
Statistics
Matches: 325, Mismatches: 34, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
125 5 0.02
126 319 0.98
127 1 0.00
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (126 bp):
AATGCAATGAAAAGTAAACAGACCTCCACACCTGGGCCTCTAAATGCAACGAAAAGTAAATGGAC
CTCCACACCTAGGTCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTAAGCCTCTA
Found at i:37048584 original size:12 final size:12
Alignment explanation
Indices: 37048569--37048611 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
37048559 TTTTTTTTAT
*
37048569 TTTTTTGGTTTC
1 TTTTTTGTTTTC
*
37048581 TTTTTTGTTTTG
1 TTTTTTGTTTTC
37048593 TTGTTTTGTTGTTC
1 TT-TTTTGTT-TTC
37048607 TTTTT
1 TTTTT
37048612 ATTTAGGCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 12 0.46
13 10 0.38
14 4 0.15
ACGTcount: A:0.00, C:0.05, G:0.16, T:0.79
Consensus pattern (12 bp):
TTTTTTGTTTTC
Found at i:37056737 original size:19 final size:17
Alignment explanation
Indices: 37056695--37056737 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
37056685 TTTTATTCTC
37056695 AATTCATCAACAAATAT
1 AATTCATCAACAAATAT
37056712 -ATCTCATCATACATAATAT
1 AAT-TCATCA-ACA-AATAT
37056731 AATTCAT
1 AATTCAT
37056738 GAAATTAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 2 0.09
17 6 0.27
18 3 0.14
19 9 0.41
20 2 0.09
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.35
Consensus pattern (17 bp):
AATTCATCAACAAATAT
Found at i:37059079 original size:21 final size:21
Alignment explanation
Indices: 37059055--37059096 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
37059045 ATCCAAATCT
*
37059055 GATTTTATTAAAGAGAAATTA
1 GATTTCATTAAAGAGAAATTA
*
37059076 GATTTCGTTAAAGAGAAATTA
1 GATTTCATTAAAGAGAAATTA
37059097 CAAGGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.17, T:0.36
Consensus pattern (21 bp):
GATTTCATTAAAGAGAAATTA
Found at i:37062631 original size:146 final size:146
Alignment explanation
Indices: 37062318--37062660 Score: 439
Period size: 146 Copynumber: 2.4 Consensus size: 146
37062308 GTGGCCGGAT
* * * *
37062318 TTTTTTTTTTTGCAAAATC-AAAGTTT-T-C-TTTAGAAAAAATCATTACTTTTCTTAAAAATTT
1 TTTTTATTTTT-CAAAATCTAAACTTTCTACTTTTA-AAAAAATCACTACTTTTCTTAAAAATTA
37062379 AAACTTTATTTCGAAATAGTTAAAAAAATCAAAACTTTATTTTAAAAACTTAAACTTTCCTTTAA
64 AAACTTTATTTCGAAATAGTTAAAAAAATCAAAACTTTATTTTAAAAACTTAAACTTTCCTTTAA
37062444 AATGACTTAAAAAATAGA
129 AATGACTTAAAAAATAGA
* * *
37062462 TTTTTATTTTTCAAAATCTAAACTTTCTCCTTTTAAAAAAA-CACTATTTTTCTTAAAGATTAAA
1 TTTTTATTTTTCAAAATCTAAACTTTCTACTTTTAAAAAAATCACTACTTTTCTTAAAAATTAAA
* * * **
37062526 ACTTTTATTTGGAAATAGTTGAAAAAAATCAAAATTTTGTTTTAAAATTTTAAACTTTCCTTTAA
66 AC-TTTATTTCGAAATAGTT-AAAAAAATCAAAACTTTATTTTAAAAACTTAAACTTTCCTTTAA
*
37062591 AATGAC-TAAAAAA-CGTA
129 AATGACTTAAAAAATAG-A
* * **
37062608 TTTTTATTTTTTAAAATCTAAACTTTCTATTTTTAAAAAAATCAAAACTTTTC
1 TTTTTATTTTTCAAAATCTAAACTTTCTACTTTTAAAAAAATCACTACTTTTC
37062661 CTAGAATCAA
Statistics
Matches: 173, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
143 7 0.04
144 16 0.09
145 23 0.13
146 69 0.40
147 58 0.34
ACGTcount: A:0.41, C:0.11, G:0.04, T:0.43
Consensus pattern (146 bp):
TTTTTATTTTTCAAAATCTAAACTTTCTACTTTTAAAAAAATCACTACTTTTCTTAAAAATTAAA
ACTTTATTTCGAAATAGTTAAAAAAATCAAAACTTTATTTTAAAAACTTAAACTTTCCTTTAAAA
TGACTTAAAAAATAGA
Found at i:37081352 original size:2 final size:2
Alignment explanation
Indices: 37081345--37081399 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
37081335 TGCTAAAATA
37081345 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
37081387 CT CT CT CT CT CT C
1 CT CT CT CT CT CT C
37081400 ACTTCTAGAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:37087665 original size:21 final size:20
Alignment explanation
Indices: 37087641--37087695 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
37087631 ATTTAATCCC
37087641 CAATTTCCAATTTTATAATTT
1 CAATTTCCAATTTTA-AATTT
* *
37087662 CAATCTTCAAATTTTAATTTT
1 CAAT-TTCCAATTTTAAATTT
*
37087683 CAATTTTCAATTT
1 CAATTTCCAATTT
37087696 CGAATTTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
22 10 0.34
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.53
Consensus pattern (20 bp):
CAATTTCCAATTTTAAATTT
Found at i:37087674 original size:14 final size:14
Alignment explanation
Indices: 37087613--37087713 Score: 57
Period size: 14 Copynumber: 7.1 Consensus size: 14
37087603 CTTTCTTCCT
37087613 AAATTCTCAATCTTC
1 AAATT-TCAATCTTC
*
37087628 AATATTT-AATC-CC
1 AA-ATTTCAATCTTC
* *
37087641 CAATTTCCAAT-TTT
1 AAATTT-CAATCTTC
37087655 ATAATTTCAATCTTC
1 A-AATTTCAATCTTC
* *
37087670 AAATTTTAATTTTC
1 AAATTTCAATCTTC
*
37087684 AATTTTCAAT-TTC
1 AAATTTCAATCTTC
* *
37087697 GAATTTTCAATCCTC
1 -AAATTTCAATCTTC
37087712 AA
1 AA
37087714 TCCTCAAATA
Statistics
Matches: 67, Mismatches: 11, Indels: 17
0.71 0.12 0.18
Matches are distributed among these distances:
12 4 0.06
13 5 0.07
14 42 0.63
15 13 0.19
16 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.01, T:0.46
Consensus pattern (14 bp):
AAATTTCAATCTTC
Found at i:37087682 original size:6 final size:7
Alignment explanation
Indices: 37087641--37087707 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
37087631 ATTTAATCCC
*
37087641 CAATTTC
1 CAATTTT
37087648 CAATTTT
1 CAATTTT
*
37087655 -ATAATTT
1 CA-ATTTT
*
37087662 CAATCTT
1 CAATTTT
37087669 CAAATTTT
1 C-AATTTT
37087677 -AATTTT
1 CAATTTT
37087683 CAATTTT
1 CAATTTT
37087690 CAA-TTT
1 CAATTTT
37087696 CGAATTTT
1 C-AATTTT
37087704 CAAT
1 CAAT
37087708 CCTCAATCCT
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
6 11 0.22
7 28 0.57
8 10 0.20
ACGTcount: A:0.33, C:0.15, G:0.01, T:0.51
Consensus pattern (7 bp):
CAATTTT
Found at i:37087714 original size:21 final size:20
Alignment explanation
Indices: 37087659--37087714 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
37087649 AATTTTATAA
*
37087659 TTTCAATCTTCAAATTTTAAT
1 TTTCAATCTTC-AATTTGAAT
*
37087680 TTTCAATTTTCAATTTCGAAT
1 TTTCAATCTTCAATTT-GAAT
*
37087701 TTTCAATCCTCAAT
1 TTTCAATCTTCAAT
37087715 CCTCAAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 5 0.17
21 25 0.83
ACGTcount: A:0.30, C:0.18, G:0.02, T:0.50
Consensus pattern (20 bp):
TTTCAATCTTCAATTTGAAT
Found at i:37091155 original size:41 final size:41
Alignment explanation
Indices: 37091093--37091279 Score: 257
Period size: 41 Copynumber: 4.6 Consensus size: 41
37091083 ATGAAGTAAT
* *
37091093 CCAGGCATTACGTCTAGCAGGCTTGATACCGGTGAAACATA
1 CCAGACATTACGTCTAGCAGGCTTGATGCCGGTGAAACATA
* *
37091134 CCAGACATTACATCTAGCAGGCTTGATGCCGATGAAACATA
1 CCAGACATTACGTCTAGCAGGCTTGATGCCGGTGAAACATA
* *
37091175 CCAGACATTACGTTTAGCAGGCTTGATGCCAGTGAAACATA
1 CCAGACATTACGTCTAGCAGGCTTGATGCCGGTGAAACATA
* *
37091216 CCAGACTTTACTTCTAGCAGGCTTGATGCCGGTGAAACATA
1 CCAGACATTACGTCTAGCAGGCTTGATGCCGGTGAAACATA
* * * * *
37091257 TCAAACTTTATGTCTAGTAGGCT
1 CCAGACATTACGTCTAGCAGGCT
37091280 AAGTGCCGGT
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 129 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (41 bp):
CCAGACATTACGTCTAGCAGGCTTGATGCCGGTGAAACATA
Found at i:37102805 original size:36 final size:36
Alignment explanation
Indices: 37102758--37102830 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
37102748 CACACGGCCA
37102758 TACAACACGACTGTGTGTCCCATGTAGTTTAAAATT
1 TACAACACGACTGTGTGTCCCATGTAGTTTAAAATT
37102794 TACAACACGACTGTGTGTCCCATGTAGTTTAAAATT
1 TACAACACGACTGTGTGTCCCATGTAGTTTAAAATT
37102830 T
1 T
37102831 TCTAACTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (36 bp):
TACAACACGACTGTGTGTCCCATGTAGTTTAAAATT
Found at i:37104277 original size:18 final size:19
Alignment explanation
Indices: 37104256--37104302 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
37104246 TTTGATTTAA
*
37104256 TTATTTAATTGTTCA-ATT
1 TTATTTAATTGTTAATATT
*
37104274 TTA-TGAATTGTTAATATT
1 TTATTTAATTGTTAATATT
37104292 TTATTCTAATT
1 TTATT-TAATT
37104303 AAGTTTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 9 0.39
18 9 0.39
19 1 0.04
20 4 0.17
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (19 bp):
TTATTTAATTGTTAATATT
Found at i:37113689 original size:27 final size:27
Alignment explanation
Indices: 37113620--37113872 Score: 265
Period size: 27 Copynumber: 9.4 Consensus size: 27
37113610 CCCTAAAATA
* *
37113620 GGTAAAATGACCAAAATACCCCCATA-
1 GGTAAAATGACCGAAATACCCCTATAG
* ** * *
37113646 GGTAAAATAACTAAAATGCCCTTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
37113673 GGTAAAATGACCGAAATACCCCAATAA
1 GGTAAAATGACCGAAATACCCCTATAG
* * * *
37113700 GGTAAAGTAATCGAAATTCCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
37113727 GGTAAAATGACCGAAATACCTCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * * *
37113754 GGTAGAATGTCCAAAATACCTCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * * *
37113781 GGTAAAATGATCAAAATACCCCCAAAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
37113808 GATAAAATGACTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
37113835 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
37113862 GGTAAAATGAC
1 GGTAAAATGAC
37113873 ATAAATATCC
Statistics
Matches: 183, Mismatches: 43, Indels: 1
0.81 0.19 0.00
Matches are distributed among these distances:
26 21 0.11
27 162 0.89
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:37113870 original size:81 final size:80
Alignment explanation
Indices: 37113616--37113879 Score: 307
Period size: 81 Copynumber: 3.3 Consensus size: 80
37113606 GAGACCCTAA
* * * * * *
37113616 AATA-GGTAAAATGACCAAAATACCCCCATAGGTAAAATAACTAAAATGCCCTTATAGGGTAAAA
1 AATAGGGTAAAATGATCAAAATACCCCCATAGGTAAAATGACTGAAATACCCCTATAGGGTAGAA
37113680 TGACCGAAATACCCC
66 TGACCGAAATACCCC
* * * * * * * *
37113695 AATAAGGTAAAGTAATCGAAATTCCCCTATAGGGTAAAATGACCGAAATACCTCTATAGGGTAGA
1 AATAGGGTAAAATGATCAAAATACCCCCATA-GGTAAAATGACTGAAATACCCCTATAGGGTAGA
* * *
37113760 ATGTCCAAAATACCTC
65 ATGACCGAAATACCCC
* *
37113776 TATAGGGTAAAATGATCAAAATACCCCCAAAGGATAAAATGACTGAAATACCCCTATAGGGTAGA
1 AATAGGGTAAAATGATCAAAATACCCCCATAGG-TAAAATGACTGAAATACCCCTATAGGGTAGA
37113841 ATGACCGAAATACCCC
65 ATGACCGAAATACCCC
*
37113857 CATAGGGTAAAATGA-CATAAATA
1 AATAGGGTAAAATGATCA-AAATA
37113880 TCCTGATTTG
Statistics
Matches: 151, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
79 4 0.03
80 24 0.16
81 123 0.81
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.20
Consensus pattern (80 bp):
AATAGGGTAAAATGATCAAAATACCCCCATAGGTAAAATGACTGAAATACCCCTATAGGGTAGAA
TGACCGAAATACCCC
Found at i:37115279 original size:27 final size:27
Alignment explanation
Indices: 37115248--37115608 Score: 386
Period size: 27 Copynumber: 13.4 Consensus size: 27
37115238 CCCCAAATTA
*
37115248 GGTAAAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
** *
37115275 GGTAAAATGACTAAAATGCCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
37115302 GTTAAAATGATCGAAATACCCCTACAG
1 GGTAAAATGACCGAAATACCCCTATAG
** *
37115329 GGTAAAATGA-TTAAGATACCCCTAGAG
1 GGTAAAATGACCGAA-ATACCCCTATAG
**
37115356 GGTAAAATGATTGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
37115383 GGTAAAATAACTGAAATA-CCCTCATAA
1 GGTAAAATGACCGAAATACCCCT-ATAG
* * *
37115410 GGTAGAATGACCGAAATACCCCCAGAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
37115437 GGTAAAATGACCAAAATACCCCTAAAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
37115464 GATAAAATGACCAAAATA-CCCTCATGG
1 GGTAAAATGACCGAAATACCCCT-ATAG
* * *
37115491 GGTAAAATGATCAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
37115518 GGTAAAATAACCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCTATAG
*
37115545 GGTAAAATGACCGAAATACCCTTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
37115572 GGTAGAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
37115599 GGTAAAATGA
1 GGTAAAATGA
37115609 TATAAATACC
Statistics
Matches: 282, Mismatches: 46, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
26 10 0.04
27 263 0.93
28 9 0.03
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:37117112 original size:27 final size:27
Alignment explanation
Indices: 37117078--37117200 Score: 183
Period size: 27 Copynumber: 4.6 Consensus size: 27
37117068 CCCTAAAATA
**
37117078 GGTAAAATGATTAAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
*
37117105 GGTAAAATGATCAAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
* * *
37117132 GGTAGAATGACCAAAATACCTCTATAG
1 GGTAAAATGACCAAAATACCCCCATAG
*
37117159 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAG
37117186 GGTAAAATGACCAAA
1 GGTAAAATGACCAAA
37117201 GTAGAATGAC
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCAAAATACCCCCATAG
Found at i:37117159 original size:54 final size:54
Alignment explanation
Indices: 37117078--37117291 Score: 185
Period size: 54 Copynumber: 3.7 Consensus size: 54
37117068 CCCTAAAATA
** *
37117078 GGTAAAATGATTAAAATACCCCCATAGGGTAAAATGATCAAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCCCATAG
* * * *
37117132 GGTAGAATGACCAAAATACCTCTATAGGGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCCCATAG
**
37117186 GGTAAAATGACCAAAGTAGAATGACCGAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCA
1 GGTAAAATGACC--A--A-AAT-ACC------C--CCATAGGGTAAAATGACCAAAATACCCCCA
37117251 TAG
52 TAG
* * * *
37117254 GGTAAAATGATCAAAATACCCTCATAAGGTAGAATGAC
1 GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGAC
37117292 TGTTTACCCC
Statistics
Matches: 131, Mismatches: 15, Indels: 28
0.75 0.09 0.16
Matches are distributed among these distances:
54 72 0.55
56 2 0.02
58 1 0.01
59 3 0.02
60 3 0.02
62 3 0.02
63 3 0.02
64 1 0.01
66 1 0.01
68 42 0.32
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.19
Consensus pattern (54 bp):
GGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCCCATAG
Found at i:37117218 original size:68 final size:68
Alignment explanation
Indices: 37117133--37117268 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 68
37117123 CCCCCATAGG
* *
37117133 GTAGAATGACCAAAATACCTCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACC
1 GTAGAATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACC
37117198 AAA
66 AAA
* * *
37117201 GTAGAATGACCGAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGATC
1 GTAGAATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACC
37117266 AAA
66 AAA
37117269 ATACCCTCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18
Consensus pattern (68 bp):
GTAGAATGACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACC
AAA
Found at i:37117243 original size:27 final size:27
Alignment explanation
Indices: 37117205--37117293 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
37117195 ACCAAAGTAG
*
37117205 AATGACCGAAATACCCCCATAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
37117232 AATGACTGAAATACCCCCATAGGGTAA
1 AATGACTGAAATACCCCCATAGGGTAA
* * * *
37117259 AATGA-TCAAAATACCCTCATAAGGTAG
1 AATGACT-GAAATACCCCCATAGGGTAA
37117286 AATGACTG
1 AATGACTG
37117294 TTTACCCCTA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 52 0.96
28 1 0.02
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
AATGACTGAAATACCCCCATAGGGTAA
Found at i:37117244 original size:95 final size:95
Alignment explanation
Indices: 37117118--37117291 Score: 258
Period size: 95 Copynumber: 1.8 Consensus size: 95
37117108 AAAATGATCA
* * * *
37117118 AAATACCCCCATAGGGTAGAATGACCAAAATACCTCTATAGGGTAAAATGACCGAAATACCCCCA
1 AAATACCCCCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCCCA
*
37117183 TAGGGTAAAATGACCAAAGTAGAATGACCG
66 TAAGGTAAAATGACCAAAGTAGAATGACCG
** * *
37117213 AAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGATCAAAATACCCTCA
1 AAATACCCCCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCCCA
*
37117278 TAAGGTAGAATGAC
66 TAAGGTAAAATGAC
37117292 TGTTTACCCC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
95 69 1.00
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.18
Consensus pattern (95 bp):
AAATACCCCCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAAATGACCAAAATACCCCCA
TAAGGTAAAATGACCAAAGTAGAATGACCG
Found at i:37120571 original size:9 final size:9
Alignment explanation
Indices: 37120539--37120607 Score: 57
Period size: 9 Copynumber: 7.0 Consensus size: 9
37120529 ATATGTGGAG
*
37120539 TTTTATATA
1 TTTTAAATA
*
37120548 TTTTATATA
1 TTTTAAATA
37120557 TTTTAAATA
1 TTTTAAATA
37120566 TTTTAAATTTAA
1 TTTTAAA--T-A
37120578 TTTTAGATATA
1 TTTTA-A-ATA
37120589 TTTTTAAATA
1 -TTTTAAATA
*
37120599 TTTAAAATA
1 TTTTAAATA
37120608 AAATTGTATA
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
9 32 0.62
10 3 0.06
11 3 0.06
12 12 0.23
13 1 0.02
14 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (9 bp):
TTTTAAATA
Found at i:37120588 original size:32 final size:32
Alignment explanation
Indices: 37120552--37120658 Score: 110
Period size: 33 Copynumber: 3.4 Consensus size: 32
37120542 TATATATTTT
* *
37120552 ATATATTTTAAATATTTTAAATTTAATTTTAG
1 ATATATTTTAAATATTTTAAATTAAATTGTAG
* * *
37120584 ATATATTTTTAAATATTTAAAATAAAATTGTAT
1 ATATA-TTTTAAATATTTTAAATTAAATTGTAG
* * *
37120617 ATATACTTTAAATAATTTAAATTGAATTG-A-
1 ATATATTTTAAATATTTTAAATTAAATTGTAG
*
37120647 ATATAATTTAAA
1 ATATATTTTAAA
37120659 AATAAATTTA
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
30 11 0.17
31 1 0.02
32 24 0.38
33 27 0.43
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.49
Consensus pattern (32 bp):
ATATATTTTAAATATTTTAAATTAAATTGTAG
Found at i:37129889 original size:39 final size:40
Alignment explanation
Indices: 37129794--37130016 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
37129784 TTGAATGATG
*
37129794 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
37129832 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
37129873 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
37129912 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
37129951 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
37129990 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37130017 GACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37129980 original size:79 final size:81
Alignment explanation
Indices: 37129794--37130016 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
37129784 TTGAATGATG
* * *
37129794 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
37129856 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
37129873 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
37129934 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
37129951 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
37130015 TG
66 TG
37130017 GACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:37130038 original size:79 final size:79
Alignment explanation
Indices: 37129794--37130049 Score: 237
Period size: 79 Copynumber: 3.3 Consensus size: 79
37129784 TTGAATGATG
* * * *
37129794 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
*
37129855 TTTGTGCGAGAT-ACTAAT
62 TTTGTGCGAG-TGACTAAA
* *
37129873 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
*
37129937 TGCGAGTTACTAAA
66 TGCGAGTGACTAAA
*
37129951 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
37130014 TTG-GACGAG-GAGCTATA
63 TTGTG-CGAGTGA-CTAAA
* *
37130031 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37130050 TACGTGATTT
Statistics
Matches: 154, Mismatches: 12, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 70 0.45
80 36 0.23
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
TGCGAGTGACTAAA
Found at i:37132986 original size:27 final size:27
Alignment explanation
Indices: 37132956--37133133 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37132946 ATATCGAGTC
* * * *
37132956 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37132983 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37133010 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37133038 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37133065 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37133092 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37133119 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37133134 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37133095 original size:82 final size:81
Alignment explanation
Indices: 37132977--37133132 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37132967 TGCTATATAA
* *
37132977 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37133042 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37133059 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37133123 CACTTAGTGC
65 CACTTAGTGC
37133133 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37141329 original size:39 final size:40
Alignment explanation
Indices: 37141234--37141456 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
37141224 TTGAATGATG
*
37141234 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
37141272 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
37141313 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
37141352 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
37141391 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
37141430 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
37141457 GATGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 92 0.57
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:37141420 original size:79 final size:80
Alignment explanation
Indices: 37141234--37141456 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 80
37141224 TTGAATGATG
* *
37141234 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAG-TCCGAAGGCAT
*
37141296 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
37141313 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCTGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGTCC-GAAGGCAT
*
37141374 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * * *
37141391 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGT-CCGAAGGCATT
37141455 TG
65 TG
37141457 GATGAGGAGC
Statistics
Matches: 126, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
77 2 0.02
78 44 0.35
79 56 0.44
80 22 0.17
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGTCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:37141487 original size:79 final size:79
Alignment explanation
Indices: 37141286--37141489 Score: 206
Period size: 79 Copynumber: 2.6 Consensus size: 79
37141276 GGACTAAGAT
* * *
37141286 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAG-TGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACT
*
37141349 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
* * *
37141364 CTGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACT
*
37141428 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* * *
37141444 CCGAAGGCATTTG-GATGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGTG-CGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
37141490 TACGTGATTT
Statistics
Matches: 106, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
77 1 0.01
78 33 0.31
79 49 0.46
80 23 0.22
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:37147251 original size:45 final size:45
Alignment explanation
Indices: 37147182--37147289 Score: 123
Period size: 45 Copynumber: 2.4 Consensus size: 45
37147172 TACACGGTGG
37147182 ATCAGCACACG-GC-ACCACCCTTATAGTCAATAGTACTC-AATGAA
1 ATCAGCACA-GAGCAACCACCCTTATAGTCAATAGTAC-CGAATGAA
* * * **
37147226 ATCAGCACAGAGCAACCACCTTTATATTCAATGGTACCGGGTGAA
1 ATCAGCACAGAGCAACCACCCTTATAGTCAATAGTACCGAATGAA
*
37147271 ATCAGCACATAGCAACCAC
1 ATCAGCACAGAGCAACCAC
37147290 TTATATAACC
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
43 1 0.02
44 12 0.22
45 42 0.76
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.19
Consensus pattern (45 bp):
ATCAGCACAGAGCAACCACCCTTATAGTCAATAGTACCGAATGAA
Found at i:37147316 original size:90 final size:90
Alignment explanation
Indices: 37147222--37147385 Score: 220
Period size: 90 Copynumber: 1.8 Consensus size: 90
37147212 TAGTACTCAA
* * **
37147222 TGAAATCAGCACAGAGCAACCACCTTTATATTCAATGGTACCGGGTGAAATCAGCACATAGCAAC
1 TGAAATCAACACAGAGCAACCAACTTTATATTCAATAATACCGGGTGAAATCAGCACATAGCAAC
*
37147287 CACTTATATAACCATTAGTATCCGG
66 CACCTATATAACCATTAGTATCCGG
* * * * * * *
37147312 TGAAATCAACACATAGCAACCAAGTTTATTTTCATTAATACCGGGTGGAATTAGCACATAGCATC
1 TGAAATCAACACAGAGCAACCAACTTTATATTCAATAATACCGGGTGAAATCAGCACATAGCAAC
37147377 CACCTATAT
66 CACCTATAT
37147386 TTCCAACGAT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 62 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (90 bp):
TGAAATCAACACAGAGCAACCAACTTTATATTCAATAATACCGGGTGAAATCAGCACATAGCAAC
CACCTATATAACCATTAGTATCCGG
Found at i:37147387 original size:45 final size:45
Alignment explanation
Indices: 37147222--37147390 Score: 153
Period size: 45 Copynumber: 3.8 Consensus size: 45
37147212 TAGTACTCAA
* * * **
37147222 TGAAATCAGCACAGAGCAACCACCTTTATATT-CAATGGTACCGGG
1 TGAAATCAGCACATAGCAACCACCTATAT-TTCCATTAATACCGGG
* ** *
37147267 TGAAATCAGCACATAGCAACCACTTATATAACCATTAGTATCC-GG
1 TGAAATCAGCACATAGCAACCACCTATATTTCCATTAATA-CCGGG
* ** * *
37147312 TGAAATCAACACATAGCAACCAAGTTTATTTTCATTAATACCGGG
1 TGAAATCAGCACATAGCAACCACCTATATTTCCATTAATACCGGG
* * *
37147357 TGGAATTAGCACATAGCATCCACCTATATTTCCA
1 TGAAATCAGCACATAGCAACCACCTATATTTCCA
37147391 ACGATATCCG
Statistics
Matches: 98, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
44 2 0.02
45 94 0.96
46 2 0.02
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.26
Consensus pattern (45 bp):
TGAAATCAGCACATAGCAACCACCTATATTTCCATTAATACCGGG
Found at i:37154742 original size:18 final size:18
Alignment explanation
Indices: 37154719--37154753 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37154709 TTGTCGTCCT
* *
37154719 CTAAGGGGAAGTAGAAAG
1 CTAAGGGAAAGAAGAAAG
37154737 CTAAGGGAAAGAAGAAA
1 CTAAGGGAAAGAAGAAA
37154754 TTTAATAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.06, G:0.34, T:0.09
Consensus pattern (18 bp):
CTAAGGGAAAGAAGAAAG
Found at i:37158585 original size:32 final size:33
Alignment explanation
Indices: 37158549--37158614 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
37158539 ATCTTTATGC
* *
37158549 CTTAAATTGAAAAAGATTTTTA-TATAGGGGAG
1 CTTAAATTGAAAAAGAATTTTATTAAAGGGGAG
*
37158581 CTTAAATTGAAAATGAATTTTATTAAAGGGGAG
1 CTTAAATTGAAAAAGAATTTTATTAAAGGGGAG
37158614 C
1 C
37158615 AATCTATTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 20 0.67
33 10 0.33
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (33 bp):
CTTAAATTGAAAAAGAATTTTATTAAAGGGGAG
Found at i:37160142 original size:75 final size:74
Alignment explanation
Indices: 37160063--37160202 Score: 185
Period size: 75 Copynumber: 1.9 Consensus size: 74
37160053 AATATAATGG
* * *
37160063 TGTGCCTAACACTAGTC-AGATAAA-CTGACAAAGTTTGCACCCAGCGCTATTCGGATAAACCAA
1 TGTGCCTAACACTAGTCGA-ATAAATC-GACAAAGATTGCACCCAGCGCTAGTCGAAT-AACCAA
37160126 CAAGTATGATAT
63 CAAGTATGATAT
* * *
37160138 TGTGCCTAGCACTAGTCGAATAAATCGACAAAGATTGCGCCCAGTGCTAGTCGAATAACCAACAA
1 TGTGCCTAACACTAGTCGAATAAATCGACAAAGATTGCACCCAGCGCTAGTCGAATAACCAACAA
37160203 TAGTTGTTCC
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
74 9 0.16
75 46 0.81
76 2 0.04
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (74 bp):
TGTGCCTAACACTAGTCGAATAAATCGACAAAGATTGCACCCAGCGCTAGTCGAATAACCAACAA
GTATGATAT
Found at i:37160457 original size:24 final size:24
Alignment explanation
Indices: 37160425--37160474 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
37160415 TGTCACATAG
37160425 AAGTGTTCTATAAAATCAAAGTCT
1 AAGTGTTCTATAAAATCAAAGTCT
* *
37160449 AAGTGTTCTATGAAATCGAAGTCT
1 AAGTGTTCTATAAAATCAAAGTCT
37160473 AA
1 AA
37160475 CGAAGAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (24 bp):
AAGTGTTCTATAAAATCAAAGTCT
Found at i:37161267 original size:9 final size:9
Alignment explanation
Indices: 37161200--37161266 Score: 89
Period size: 9 Copynumber: 7.4 Consensus size: 9
37161190 GTAGTGATTC
*
37161200 AATTTGGTT
1 AATTCGGTT
37161209 AATTCGGTT
1 AATTCGGTT
*
37161218 AATTCGGGT
1 AATTCGGTT
*
37161227 AATTCGGGT
1 AATTCGGTT
37161236 AATTCGGTT
1 AATTCGGTT
*
37161245 AATTTGGTT
1 AATTCGGTT
*
37161254 AATTTGGTT
1 AATTCGGTT
37161263 AATT
1 AATT
37161267 TTTAACCAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 54 1.00
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.46
Consensus pattern (9 bp):
AATTCGGTT
Found at i:37161646 original size:33 final size:36
Alignment explanation
Indices: 37161596--37161663 Score: 106
Period size: 33 Copynumber: 2.0 Consensus size: 36
37161586 AAGCCCTTTC
37161596 CAGTATCAGTGTAGGCCTTAG-CCCAATA-CATTAT
1 CAGTATCAGTGTAGGCCTTAGCCCCAATAGCATTAT
*
37161630 CAGTA-CAGTGTGGGCCTTAGCCCCAATAGCATTA
1 CAGTATCAGTGTAGGCCTTAGCCCCAATAGCATTA
37161664 GTGTGGGCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 14 0.45
34 12 0.39
35 5 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (36 bp):
CAGTATCAGTGTAGGCCTTAGCCCCAATAGCATTAT
Found at i:37162096 original size:26 final size:26
Alignment explanation
Indices: 37162057--37162167 Score: 161
Period size: 26 Copynumber: 4.3 Consensus size: 26
37162047 GCCCTACGGA
* *
37162057 GGTATTTCGGTAATTTACCTATCGAG
1 GGTATTTCGATAATTTACCCATCGAG
*
37162083 GGGATTTCGATAATTTACCCATCGAG
1 GGTATTTCGATAATTTACCCATCGAG
* *
37162109 GGTATTTTGGTAATTTACCCATCGAG
1 GGTATTTCGATAATTTACCCATCGAG
37162135 GGTATTTC-AGTAATTTACCCATCGAG
1 GGTATTTCGA-TAATTTACCCATCGAG
37162161 GGTATTT
1 GGTATTT
37162168 TGGTCAACAC
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (26 bp):
GGTATTTCGATAATTTACCCATCGAG
Found at i:37162121 original size:52 final size:52
Alignment explanation
Indices: 37162057--37162171 Score: 187
Period size: 52 Copynumber: 2.2 Consensus size: 52
37162047 GCCCTACGGA
* *
37162057 GGTATTTCGGTAATTTACCTATCGAGGGGATTTC-GATAATTTACCCATCGAG
1 GGTATTTTGGTAATTTACCCATCGAGGGGATTTCAG-TAATTTACCCATCGAG
*
37162109 GGTATTTTGGTAATTTACCCATCGAGGGTATTTCAGTAATTTACCCATCGAG
1 GGTATTTTGGTAATTTACCCATCGAGGGGATTTCAGTAATTTACCCATCGAG
37162161 GGTATTTTGGT
1 GGTATTTTGGT
37162172 CAACACCGTG
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
52 58 0.98
53 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.37
Consensus pattern (52 bp):
GGTATTTTGGTAATTTACCCATCGAGGGGATTTCAGTAATTTACCCATCGAG
Found at i:37169350 original size:27 final size:28
Alignment explanation
Indices: 37169312--37169371 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
37169302 AGCTGCTAGT
* *
37169312 ACAGT-ATATGTGGCATAGCCACCA-ATA
1 ACAGTAATATGTGGCAGAACCACCAGA-A
37169339 ACAGTAAT-TGTGGCAGAACCACCAGAA
1 ACAGTAATATGTGGCAGAACCACCAGAA
37169366 ACAGTA
1 ACAGTA
37169372 CTTCCTCCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 26 0.90
28 3 0.10
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (28 bp):
ACAGTAATATGTGGCAGAACCACCAGAA
Found at i:37169556 original size:26 final size:26
Alignment explanation
Indices: 37169517--37169667 Score: 160
Period size: 26 Copynumber: 5.7 Consensus size: 26
37169507 TTGGTCAATC
* *
37169517 TACCCTTCTGGGGGTATTTCAGTATTTT
1 TACCCATC-GGGGGTATTTCAGTA-ATT
* *
37169545 TA-CCTTACGGGGGTATTTTAGTAATT
1 TACCCAT-CGGGGGTATTTCAGTAATT
37169571 TACCCATCGGGGGTATTTCAGTAATT
1 TACCCATCGGGGGTATTTCAGTAATT
* ** *
37169597 TACCCATCGAGGGTATTTTGGCAATT
1 TACCCATCGGGGGTATTTCAGTAATT
* * *
37169623 TACCTATCGAGGGTATTTCAATAATT
1 TACCCATCGGGGGTATTTCAGTAATT
*
37169649 TACCCATCGAGGGTATTTC
1 TACCCATCGGGGGTATTTC
37169668 GGTCAACACC
Statistics
Matches: 107, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 83 0.78
27 21 0.20
28 3 0.03
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (26 bp):
TACCCATCGGGGGTATTTCAGTAATT
Found at i:37169615 original size:52 final size:52
Alignment explanation
Indices: 37169512--37169666 Score: 186
Period size: 52 Copynumber: 2.9 Consensus size: 52
37169502 GTGTATTGGT
* * * * *
37169512 CAATCTACCCTTCTGGGGGTATTTCAGTATTTTTA-CCTTACGGGGGTATTTTAG
1 CAATTTACCCATC-GGGGGTATTTCAGTA-ATTTACCCAT-CGAGGGTATTTTAG
* *
37169566 TAATTTACCCATCGGGGGTATTTCAGTAATTTACCCATCGAGGGTATTTTGG
1 CAATTTACCCATCGGGGGTATTTCAGTAATTTACCCATCGAGGGTATTTTAG
* * *
37169618 CAATTTACCTATCGAGGGTATTTCAATAATTTACCCATCGAGGGTATTT
1 CAATTTACCCATCGGGGGTATTTCAGTAATTTACCCATCGAGGGTATTT
37169667 CGGTCAACAC
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
52 61 0.69
53 18 0.20
54 10 0.11
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (52 bp):
CAATTTACCCATCGGGGGTATTTCAGTAATTTACCCATCGAGGGTATTTTAG
Found at i:37172795 original size:16 final size:16
Alignment explanation
Indices: 37172770--37172812 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
37172760 TTGAATTTTT
37172770 GTTA-TAAGAATATTG
1 GTTATTAAGAATATTG
37172785 GTTATTAAGAATATTG
1 GTTATTAAGAATATTG
*
37172801 ATTATTAAGAAT
1 GTTATTAAGAAT
37172813 TTTATTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (16 bp):
GTTATTAAGAATATTG
Found at i:37172839 original size:18 final size:17
Alignment explanation
Indices: 37172811--37172845 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37172801 ATTATTAAGA
*
37172811 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
37172828 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
37172846 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:37172947 original size:59 final size:57
Alignment explanation
Indices: 37172786--37172979 Score: 136
Period size: 57 Copynumber: 3.3 Consensus size: 57
37172776 AGAATATTGG
*
37172786 TTATTAAGAATATTGATTATTAAGAATTTTATTAAATTATA-TATTTTAATTAAAAT
1 TTATTAAGAATATTGATTATTAAGAATTTTATTAAATTATATTATTTTAAGTAAAAT
* * * * * *
37172842 ATATTTAATAATAATT-ATGT-TAAATTATATTTTA-TAGTATCATATATTATGATTTTAGT-AA
1 TTA-TTAAGAAT-ATTGAT-TATTAA-GA-ATTTTATTA-AAT--TATATTAT--TTTAAGTAAA
37172903 AT
56 AT
37172905 TTATATAAGAATATTGATTATTAAGAATTTTATTAAATTATA-TATTTTAA-TAATAAT
1 TTAT-TAAGAATATTGATTATTAAGAATTTTATTAAATTATATTATTTTAAGTAA-AAT
*
37172962 TATGTTAA-AATA-TGATTA
1 T-TATTAAGAATATTGATTA
37172980 AATTATTTAT
Statistics
Matches: 106, Mismatches: 14, Indels: 37
0.68 0.09 0.24
Matches are distributed among these distances:
55 7 0.07
56 11 0.10
57 19 0.18
58 12 0.11
59 12 0.11
61 12 0.11
62 11 0.10
63 17 0.16
64 5 0.05
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (57 bp):
TTATTAAGAATATTGATTATTAAGAATTTTATTAAATTATATTATTTTAAGTAAAAT
Found at i:37173200 original size:45 final size:44
Alignment explanation
Indices: 37173107--37173203 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
37173097 CTATTACACC
*
37173107 TCCATTCCATTCAACCAAACACAAGAATATTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACACAAGAATATTATTACGCCTCTAT
*
37173151 TCCATTACATTCAACCAAACA-ATTGAAT-TGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACACA-AGAATAT--TATTACGCCTCTAT
37173196 TCCATTAC
1 TCCATTAC
37173204 GCCTCTATTC
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
43 2 0.04
44 24 0.50
45 22 0.46
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (44 bp):
TCCATTACATTCAACCAAACACAAGAATATTATTACGCCTCTAT
Done.