Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 121 of 221
Found at i:37173204 original size:16 final size:16
Alignment explanation
Indices: 37173183--37173215 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
37173173 TTGAATTGCT
37173183 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
37173199 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
37173215 A
1 A
37173216 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:37186317 original size:35 final size:34
Alignment explanation
Indices: 37186241--37186346 Score: 87
Period size: 35 Copynumber: 3.1 Consensus size: 34
37186231 ATTATCCAAC
* *
37186241 TTTGGACATGCAATTA-AACATAC-GAACAATCATA
1 TTTGGACAT-C-ATTATAACATACAAAACAACCATA
37186275 TTTGGACAAT-ATTATAACATGTA-AAAACAACCAT-
1 TTTGGAC-ATCATTATAACA--TACAAAACAACCATA
* *
37186309 TTTGGGACATCTTTATAACATACAAAACAACCACA
1 TTT-GGACATCATTATAACATACAAAACAACCATA
37186344 TTT
1 TTT
37186347 AATTATTCCA
Statistics
Matches: 59, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
32 4 0.07
33 6 0.10
34 22 0.37
35 27 0.46
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.29
Consensus pattern (34 bp):
TTTGGACATCATTATAACATACAAAACAACCATA
Found at i:37192970 original size:83 final size:83
Alignment explanation
Indices: 37192817--37192971 Score: 204
Period size: 83 Copynumber: 1.9 Consensus size: 83
37192807 ATGCATGATT
* ** * *
37192817 ACATGTCCAGACCAAAATAGATTCAGTGTGACATTTGTCTGAAATGAATAAAAGAGTATATACAC
1 ACATGTCCAGACCAAAATAGATTCAGAGTGACATGGGTCTGAAAAGAATAAAAGAGTAAATACAC
*
37192882 TAACATACATGCATGCAC
66 CAACATACATGCATGCAC
* * **
37192900 ACATGTCCAGTA-CAACATAGATTCAGAGTGACATGGGTCTGAAAAGAATAAAAGGGTAAATGTA
1 ACATGTCCAG-ACCAAAATAGATTCAGAGTGACATGGGTCTGAAAAGAATAAAAGAGTAAATACA
37192964 CCAACATA
65 CCAACATA
37192972 AATATATGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
83 60 0.98
84 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (83 bp):
ACATGTCCAGACCAAAATAGATTCAGAGTGACATGGGTCTGAAAAGAATAAAAGAGTAAATACAC
CAACATACATGCATGCAC
Found at i:37205438 original size:18 final size:18
Alignment explanation
Indices: 37205417--37205451 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37205407 AAGAAAAGGC
37205417 TCTTTTTT-TTCTCTTTTA
1 TCTTTTTTGTTC-CTTTTA
37205435 TCTTTTTTGTTCCTTTT
1 TCTTTTTTGTTCCTTTT
37205452 GGTAGATGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.77
Consensus pattern (18 bp):
TCTTTTTTGTTCCTTTTA
Found at i:37214075 original size:20 final size:22
Alignment explanation
Indices: 37214050--37214106 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
37214040 AAACAATTTA
*
37214050 GAATCGATTTAAACA-A-TAAT
1 GAATCGATTTAAACATAGCAAT
* *
37214070 GGATCGATTCAAA-ATAGCAAT
1 GAATCGATTTAAACATAGCAAT
37214091 GAATCGATTTAAACAT
1 GAATCGATTTAAACAT
37214107 CAAACAATTG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
19 1 0.03
20 12 0.41
21 14 0.48
22 2 0.07
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.28
Consensus pattern (22 bp):
GAATCGATTTAAACATAGCAAT
Found at i:37214668 original size:16 final size:16
Alignment explanation
Indices: 37214649--37214693 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
37214639 GCAAGCTCGC
37214649 AAGCTTGCACTTTAAT
1 AAGCTTGCACTTTAAT
* *
37214665 AAGCTTGCATTTTGAT
1 AAGCTTGCACTTTAAT
* *
37214681 GAGCTCGCACTTT
1 AAGCTTGCACTTT
37214694 TGTAGCTCGC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (16 bp):
AAGCTTGCACTTTAAT
Found at i:37215447 original size:54 final size:55
Alignment explanation
Indices: 37215389--37215513 Score: 137
Period size: 55 Copynumber: 2.3 Consensus size: 55
37215379 TTTTAAATCA
* *
37215389 TGTAACTCACTGAGTTAG-GTCACACAGTCGTGTC-GCAAGCCGTATGCCAGACCG
1 TGTAACTCACTGACTT-GCGACACACAGTCGTGTCGGCAAGCCGTATGCCAGACCG
** * * * * *
37215443 TGTAACTCTTTGACTTGCGACACACGGTCGTGTCGGTAGGCCGTGTGCTAGACCG
1 TGTAACTCACTGACTTGCGACACACAGTCGTGTCGGCAAGCCGTATGCCAGACCG
*
37215498 TGTAACACACTGACTT
1 TGTAACTCACTGACTT
37215514 AATACATATA
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
53 1 0.02
54 27 0.47
55 29 0.51
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (55 bp):
TGTAACTCACTGACTTGCGACACACAGTCGTGTCGGCAAGCCGTATGCCAGACCG
Found at i:37219733 original size:20 final size:20
Alignment explanation
Indices: 37219710--37219785 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 20
37219700 AAACAATTTA
*
37219710 GAATCGATTTGAACAAGAAT
1 GAATCGATTTAAACAAGAAT
*
37219730 GAATTGATTTAAA-ATAGCAAT
1 GAATCGATTTAAACA-AG-AAT
* *
37219751 GAATCAATTTAAATAAGAAT
1 GAATCGATTTAAACAAGAAT
*
37219771 GAATTGATTTAAACA
1 GAATCGATTTAAACA
37219786 TCAAACAATC
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 1 0.02
20 28 0.61
21 16 0.35
22 1 0.02
ACGTcount: A:0.49, C:0.07, G:0.14, T:0.30
Consensus pattern (20 bp):
GAATCGATTTAAACAAGAAT
Found at i:37220809 original size:20 final size:19
Alignment explanation
Indices: 37220782--37220834 Score: 79
Period size: 20 Copynumber: 2.7 Consensus size: 19
37220772 GGTGGAGTAG
*
37220782 AAATATCGATACCTTAGGA
1 AAATATCGATACCTTAAGA
37220801 AATATATCGATACCTTAAGA
1 AA-ATATCGATACCTTAAGA
37220821 AAAGTATCGATACC
1 AAA-TATCGATACC
37220835 GGATCGATAC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 3 0.10
20 28 0.90
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.26
Consensus pattern (19 bp):
AAATATCGATACCTTAAGA
Found at i:37223997 original size:21 final size:21
Alignment explanation
Indices: 37223971--37224015 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
37223961 TTTGTTTGAT
37223971 TGGTGAGAAAACTAAAGAAAA
1 TGGTGAGAAAACTAAAGAAAA
*
37223992 TGGTGAGAAAACTGAAGAAAA
1 TGGTGAGAAAACTAAAGAAAA
37224013 TGG
1 TGG
37224016 ATTTCATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.51, C:0.04, G:0.29, T:0.16
Consensus pattern (21 bp):
TGGTGAGAAAACTAAAGAAAA
Found at i:37224868 original size:11 final size:11
Alignment explanation
Indices: 37224852--37224877 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37224842 AATGTTTCTC
37224852 AATAAATTAAA
1 AATAAATTAAA
37224863 AATAAATTAAA
1 AATAAATTAAA
37224874 AATA
1 AATA
37224878 TATATATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAAATTAAA
Found at i:37225014 original size:25 final size:25
Alignment explanation
Indices: 37224984--37225040 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 25
37224974 TATAATACCC
*
37224984 AAACAATAACAACATAATAGTAAAA
1 AAACAATAACAACAAAATAGTAAAA
*
37225009 AAAC---AACAAGAAAATAGTAAAA
1 AAACAATAACAACAAAATAGTAAAA
37225031 AAGACAATAA
1 AA-ACAATAA
37225041 GTTTTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
22 18 0.69
23 2 0.08
25 4 0.15
26 2 0.08
ACGTcount: A:0.70, C:0.11, G:0.07, T:0.12
Consensus pattern (25 bp):
AAACAATAACAACAAAATAGTAAAA
Found at i:37225016 original size:22 final size:23
Alignment explanation
Indices: 37224991--37225037 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
37224981 CCCAAACAAT
*
37224991 AACAACATAATAGTAAAAAA-AC
1 AACAACAAAATAGTAAAAAAGAC
*
37225013 AACAAGAAAATAGTAAAAAAGAC
1 AACAACAAAATAGTAAAAAAGAC
37225036 AA
1 AA
37225038 TAAGTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.70, C:0.11, G:0.09, T:0.11
Consensus pattern (23 bp):
AACAACAAAATAGTAAAAAAGAC
Found at i:37230277 original size:26 final size:26
Alignment explanation
Indices: 37230243--37230295 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
37230233 GGCTCAACGA
37230243 TTTTGGCGACGTTATATCATGAGCTT
1 TTTTGGCGACGTTATATCATGAGCTT
37230269 TTTTGGCGACGTTATATCATGAGCTT
1 TTTTGGCGACGTTATATCATGAGCTT
37230295 T
1 T
37230296 GTCATGCGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.43
Consensus pattern (26 bp):
TTTTGGCGACGTTATATCATGAGCTT
Found at i:37245828 original size:2 final size:2
Alignment explanation
Indices: 37245821--37245845 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37245811 CTCTATATGA
37245821 GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT G
37245846 GATTCATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:37251534 original size:15 final size:16
Alignment explanation
Indices: 37251503--37251536 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
37251493 TAAAAATTAA
37251503 AAAATAAGATAAATTG
1 AAAATAAGATAAATTG
*
37251519 AAAATAA-ATTAATTG
1 AAAATAAGATAAATTG
37251534 AAA
1 AAA
37251537 TTTGATAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (16 bp):
AAAATAAGATAAATTG
Found at i:37252531 original size:29 final size:28
Alignment explanation
Indices: 37252510--37252577 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 28
37252500 ATATTATTAT
37252510 AAAA-ATTTTAAAAAAATTAATAATATA
1 AAAATATTTTAAAAAAATTAATAATATA
*
37252537 AAAATATTTT-ATAAAATT--T-ATATA
1 AAAATATTTTAAAAAAATTAATAATATA
*
37252561 AAAATAATATTAAAAAA
1 AAAAT-ATTTTAAAAAA
37252578 TTTTATATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
24 10 0.29
25 5 0.14
26 4 0.11
27 11 0.31
28 5 0.14
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (28 bp):
AAAATATTTTAAAAAAATTAATAATATA
Found at i:37252551 original size:13 final size:13
Alignment explanation
Indices: 37252499--37252576 Score: 58
Period size: 12 Copynumber: 6.2 Consensus size: 13
37252489 TAAGATTGCT
37252499 AATATTATTATAAA
1 AATATTA-TATAAA
*
37252513 AAT-TT-TAAAAA
1 AATATTATATAAA
*
37252524 AATTAATAATATAAA
1 AA-T-ATTATATAAA
*
37252539 AATATTTTAT-AA
1 AATATTATATAAA
37252551 AAT-TTATATAAA
1 AATATTATATAAA
*
37252563 AATAATAT-TAAA
1 AATATTATATAAA
37252575 AA
1 AA
37252577 ATTTTATATT
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
11 12 0.24
12 17 0.33
13 10 0.20
14 5 0.10
15 7 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATTATATAAA
Found at i:37252564 original size:24 final size:26
Alignment explanation
Indices: 37252532--37252585 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 26
37252522 AAAATTAATA
* *
37252532 ATATAAAAAT-ATTTTATAAAA-TTT
1 ATATAAAAATAATATTAAAAAATTTT
37252556 ATATAAAAATAATATTAAAAAATTTT
1 ATATAAAAATAATATTAAAAAATTTT
37252582 ATAT
1 ATAT
37252586 TATTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 10 0.38
25 9 0.35
26 7 0.27
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
ATATAAAAATAATATTAAAAAATTTT
Found at i:37253021 original size:16 final size:15
Alignment explanation
Indices: 37252990--37253030 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
37252980 TATTTTATTG
*
37252990 TAATTTTTATTTTTA
1 TAATTTATATTTTTA
37253005 TAATTTATATGTTTTA
1 TAATTTATAT-TTTTA
*
37253021 TAAATTATAT
1 TAATTTATAT
37253031 ATATTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (15 bp):
TAATTTATATTTTTA
Found at i:37253053 original size:20 final size:19
Alignment explanation
Indices: 37253007--37253059 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
37252997 TATTTTTATA
37253007 ATTTATATGTTTTATAAATT
1 ATTTATAT-TTTTATAAATT
* *
37253027 ATATATATTTTTATGAATTT
1 ATTTATATTTTTAT-AAATT
*
37253047 TTTTATATTTTTA
1 ATTTATATTTTTA
37253060 ATGTGTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 6 0.21
20 22 0.79
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
ATTTATATTTTTATAAATT
Found at i:37257069 original size:22 final size:23
Alignment explanation
Indices: 37257026--37257074 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
37257016 TTTTGAGCAA
* *
37257026 TTTAATTTTTCTTTTATGTTCT-
1 TTTAACTTTCCTTTTATGTTCTC
* *
37257048 TTTAACTTTCCTTTTTTTTTCTC
1 TTTAACTTTCCTTTTATGTTCTC
37257071 TTTA
1 TTTA
37257075 TTTTCCATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.12, C:0.14, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTAACTTTCCTTTTATGTTCTC
Found at i:37257523 original size:31 final size:29
Alignment explanation
Indices: 37257482--37257554 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
37257472 TTAATGGCTT
* *
37257482 AGTGATTAAAATGTTACAACACGATAACATA
1 AGTGACTAAAATGTAACAACAC-A-AACATA
***
37257513 AGTGACTAAAATGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACAACACAAACATA
37257542 AGTGACTAAAATG
1 AGTGACTAAAATG
37257555 AATTGAGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 19 0.51
30 1 0.03
31 17 0.46
ACGTcount: A:0.48, C:0.12, G:0.14, T:0.26
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAACACAAACATA
Found at i:37260477 original size:18 final size:18
Alignment explanation
Indices: 37260454--37260491 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
37260444 CTAGATTGTA
37260454 ACACCCCTACCTATATTT
1 ACACCCCTACCTATATTT
37260472 ACACCCCTACCTATATTT
1 ACACCCCTACCTATATTT
37260490 AC
1 AC
37260492 GAGGTAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.39, G:0.00, T:0.32
Consensus pattern (18 bp):
ACACCCCTACCTATATTT
Found at i:37260566 original size:15 final size:15
Alignment explanation
Indices: 37260538--37260571 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
37260528 TTATCGGAGC
*
37260538 TTTTCAAATTAATTT
1 TTTTCAAATAAATTT
*
37260553 TTTTCGAATAAATTT
1 TTTTCAAATAAATTT
37260568 TTTT
1 TTTT
37260572 TCGTTATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (15 bp):
TTTTCAAATAAATTT
Found at i:37260830 original size:69 final size:69
Alignment explanation
Indices: 37260742--37260873 Score: 246
Period size: 69 Copynumber: 1.9 Consensus size: 69
37260732 CATACCAAAC
*
37260742 CTAAGATTTGATAGTCATACCAATGGTTAACTTTACATTCATTTCACATTAACATTTACTTTAAT
1 CTAAGATTTGATAGCCATACCAATGGTTAACTTTACATTCATTTCACATTAACATTTACTTTAAT
37260807 AAAA
66 AAAA
*
37260811 CTAAGATTTGATAGCCATACCAATGGTTAACTTTACATTCATTTCACATTAACATTTATTTTA
1 CTAAGATTTGATAGCCATACCAATGGTTAACTTTACATTCATTTCACATTAACATTTACTTTA
37260874 TCAACTTATA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.40
Consensus pattern (69 bp):
CTAAGATTTGATAGCCATACCAATGGTTAACTTTACATTCATTTCACATTAACATTTACTTTAAT
AAAA
Found at i:37264242 original size:27 final size:27
Alignment explanation
Indices: 37264212--37264265 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
37264202 AACTACAAAA
*
37264212 AATACCAATGGGGCCTATCGATTGTGG
1 AATACCAATGGGGCCTATCGACTGTGG
* *
37264239 AATACTAATGGGGCCTCTCGACTGTGG
1 AATACCAATGGGGCCTATCGACTGTGG
37264266 TTATTTGCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (27 bp):
AATACCAATGGGGCCTATCGACTGTGG
Found at i:37271517 original size:19 final size:19
Alignment explanation
Indices: 37271493--37271531 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
37271483 GAATCAAGGG
*
37271493 TGTTAGTGGAATTATCTAA
1 TGTTAGTAGAATTATCTAA
37271512 TGTTAGTAGAATTATCTAA
1 TGTTAGTAGAATTATCTAA
37271531 T
1 T
37271532 TTTTCCACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (19 bp):
TGTTAGTAGAATTATCTAA
Found at i:37274044 original size:26 final size:26
Alignment explanation
Indices: 37274008--37274060 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
37273998 ACTGTATAGA
37274008 TCAATGTACTAGAGTTTCTAGTGAGT
1 TCAATGTACTAGAGTTTCTAGTGAGT
37274034 TCAATGTACTAGAGTTTCTAGTGAGT
1 TCAATGTACTAGAGTTTCTAGTGAGT
37274060 T
1 T
37274061 ATTTCTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (26 bp):
TCAATGTACTAGAGTTTCTAGTGAGT
Found at i:37279212 original size:26 final size:26
Alignment explanation
Indices: 37279166--37279221 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
37279156 AATTTTGAAA
* * *
37279166 CTCAGAAAGAGCCTTTAATCGGGAAG
1 CTCACAAAGAGCCTATAATCGAGAAG
*
37279192 CTCACAAAGAGCC-ATATATCGAGACG
1 CTCACAAAGAGCCTATA-ATCGAGAAG
37279218 CTCA
1 CTCA
37279222 TAAGAGCTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (26 bp):
CTCACAAAGAGCCTATAATCGAGAAG
Found at i:37289749 original size:16 final size:16
Alignment explanation
Indices: 37289728--37289761 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37289718 TTTTTGTCTA
37289728 TTAATTACAAAATTAT
1 TTAATTACAAAATTAT
* *
37289744 TTAATTATATAATTAT
1 TTAATTACAAAATTAT
37289760 TT
1 TT
37289762 TGCTAAGGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATTACAAAATTAT
Found at i:37291306 original size:17 final size:17
Alignment explanation
Indices: 37291265--37291306 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
37291255 TTTTCAATTT
37291265 TTTTATATTATATTTAA
1 TTTTATATTATATTTAA
*
37291282 TTTAATATT-TATTTAAA
1 TTTTATATTATATTT-AA
37291299 TTTTATAT
1 TTTTATAT
37291307 ATAACATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATATTATATTTAA
Found at i:37292059 original size:11 final size:11
Alignment explanation
Indices: 37292043--37292069 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
37292033 AAATACATAA
37292043 ATATTTTAAAT
1 ATATTTTAAAT
37292054 ATATTTTAAAT
1 ATATTTTAAAT
37292065 ATATT
1 ATATT
37292070 AGAAGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATATTTTAAAT
Found at i:37316969 original size:17 final size:18
Alignment explanation
Indices: 37316955--37317036 Score: 76
Period size: 19 Copynumber: 4.4 Consensus size: 18
37316945 ATAATCTTCG
37316955 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
* *
37316973 TATGATATGCAATCTTAAA
1 -AGGATATGCAATCTTAGA
* *
37316992 TATGATATGCAGTCTTAGA
1 -AGGATATGCAATCTTAGA
* *
37317011 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
37317030 A-GATATG
1 AGGATATG
37317037 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 50 0.88
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:37316981 original size:19 final size:19
Alignment explanation
Indices: 37316957--37317029 Score: 119
Period size: 19 Copynumber: 3.8 Consensus size: 19
37316947 AATCTTCGAG
37316957 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37316976 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
*
37316995 GATATGCAGTCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37317014 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
37317030 AGATATGATT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 49 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:37317055 original size:22 final size:22
Alignment explanation
Indices: 37316970--37317052 Score: 79
Period size: 19 Copynumber: 4.0 Consensus size: 22
37316960 ATGCAATCTT
*
37316970 AGATATGATATGCAATCTT--A
1 AGATATGATATGTAATCTTAGA
* *
37316990 A-ATATGATATGCAGTCTT---
1 AGATATGATATGTAATCTTAGA
37317008 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
37317030 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
37317053 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
18 1 0.02
19 31 0.57
20 1 0.02
22 8 0.15
23 13 0.24
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:37317062 original size:22 final size:23
Alignment explanation
Indices: 37317018--37317062 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
37317008 AGATATGATA
*
37317018 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
37317041 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
37317063 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:37317496 original size:3 final size:3
Alignment explanation
Indices: 37317488--37317527 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
37317478 ATTAATTTTG
*
37317488 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T
37317528 ACTTACATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:37317496 original size:15 final size:15
Alignment explanation
Indices: 37317472--37317526 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
37317462 GTTTTTAGTC
37317472 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
37317486 TGTTATTATTATTTT
1 TATTATTATTAATTT
37317501 TATTATTA-T-ATTAT
1 TATTATTATTAATT-T
37317515 ATATTATTATTA
1 -TATTATTATTA
37317527 TACTTACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
13 2 0.06
14 5 0.16
15 24 0.75
16 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:37317503 original size:12 final size:12
Alignment explanation
Indices: 37317474--37317525 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
37317464 TTTTAGTCTA
37317474 TTTTATTAATT-T
1 TTTTATT-ATTAT
*
37317486 TGTTATTATTAT
1 TTTTATTATTAT
37317498 TTTTATTATTAT
1 TTTTATTATTAT
37317510 ATTATATATTATTAT
1 -TT-T-TATTATTAT
37317525 T
1 T
37317526 ATACTTACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 3 0.09
12 18 0.53
13 2 0.06
14 2 0.06
15 9 0.26
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTTATTATTAT
Found at i:37317894 original size:51 final size:52
Alignment explanation
Indices: 37317786--37317901 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 52
37317776 ATTTTTCACG
** *
37317786 TTTT-TATAT-TATACTTATATATTTCATTTTTTTGTAAATGCATGAATATG
1 TTTTATATATATATACTTATATATTTCATTTTTTCATAAATGCATGAATATA
* * * *
37317836 TTTTATATGTATATATTTATAT-TTTCATTGTTTTCATAAATGCAT-TATGTA
1 TTTTATATATATATACTTATATATTTCATT-TTTTCATAAATGCATGAATATA
37317887 TTTTATATATATATA
1 TTTTATATATATATA
37317902 AGTTTTATAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
50 4 0.07
51 28 0.51
52 23 0.42
ACGTcount: A:0.31, C:0.05, G:0.07, T:0.57
Consensus pattern (52 bp):
TTTTATATATATATACTTATATATTTCATTTTTTCATAAATGCATGAATATA
Found at i:37324227 original size:44 final size:44
Alignment explanation
Indices: 37324179--37324493 Score: 137
Period size: 44 Copynumber: 7.2 Consensus size: 44
37324169 AATAGCAGAT
* **
37324179 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGTCACCAGC
1 CTTGCCTTCCTGCATCGACAGCGAAGCAGATAAAAGTCACCAGC
** * * * * *
37324223 CTTGCC-TCTCTGGGTTG-CAGC-AGAGCAGGCTAAAAAT-AGCAGAT
1 CTTGCCTTC-CTGCATCGACAGCGA-AGCA-GATAAAAGTCACCAG-C
* * *
37324267 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGC
1 CTTGCCTTCCTGCATCGACAGCGAAGCAGATAAAAGTCACCAGC
* * * * * * *
37324311 CTTGCCTCCCTG-AGTTG-CAGCGGAGCAGGCTAAAAAT-AGCAGAT
1 CTTGCCTTCCTGCA-TCGACAGCGAAGCA-GATAAAAGTCACCAG-C
** *
37324355 CTTGCCTTCCTGCATCGACAGCGAAGCAGATTGAAGACACCAGC
1 CTTGCCTTCCTGCATCGACAGCGAAGCAGATAAAAGTCACCAGC
* ** * * * * *
37324399 CTTGCCTCCCTGGGTTG-CAGC-AGAGCAGGCTAAAAAT-AGCAGAT
1 CTTGCCTTCCTGCATCGACAGCGA-AGCA-GATAAAAGTCACCAG-C
* * * ** *
37324443 CTTGCCTTCTTGTACCGACAGCGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCATCGACAGCGAAGCAGATAAAAGTCACCAGC
37324487 CTTGCCT
1 CTTGCCT
37324494 CCATGGGTTA
Statistics
Matches: 187, Mismatches: 64, Indels: 40
0.64 0.22 0.14
Matches are distributed among these distances:
42 2 0.01
43 40 0.21
44 103 0.55
45 40 0.21
46 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.19
Consensus pattern (44 bp):
CTTGCCTTCCTGCATCGACAGCGAAGCAGATAAAAGTCACCAGC
Found at i:37324875 original size:88 final size:88
Alignment explanation
Indices: 37324086--37324839 Score: 1067
Period size: 88 Copynumber: 8.6 Consensus size: 88
37324076 GTGAAGATAA
* * * * * *
37324086 CAGATCTTGCCTTCCTGTACTGGCAGTGAAACAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* * * *
37324151 ACAGTGGAGTAGGTTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* *
37324174 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGTCACCAGCCTTGCCTCTCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
37324239 GCAGCAGAGCAGGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* *
37324262 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGAGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
37324327 GCAGCGGAGCAGGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* *
37324350 CAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATTGAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
37324415 GCAGCAGAGCAGGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * *
37324438 CAGATCTTGCCTTCTTGTACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCATGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
37324503 ACAGCGGAGCAGGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * * * * * * *
37324526 TAGATCTTGCCTTCCTGCACCGAAAGCAAAGCAAATAGAAGTCATCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
37324591 GCAGCGGAGTAGGCTGAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * ** *
37324614 CATATCTTGCCTTCCTGCATCGACAATGAAGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
**
37324679 GCAGTAGAGCAGGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * * *
37324702 TAGATCTTGCCTTCCTACACCGACAGCGAAGCAGATCGAAGACACCGGCCTTACCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
37324767 GCAGCGGAGCAGGTTAAAGATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * * *
37324790 CAGATCTTGCCTTCCTGCACCGACAGCGAAGTAGATTGATGACCCCAGCC
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
37324840 CTATCTCCCT
Statistics
Matches: 587, Mismatches: 79, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 587 1.00
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.20
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
GCAGCGGAGCAGGCTAAAAATAG
Found at i:37324905 original size:44 final size:44
Alignment explanation
Indices: 37324839--37325214 Score: 500
Period size: 44 Copynumber: 8.7 Consensus size: 44
37324829 TGACCCCAGC
*
37324839 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
37324883 CCTATCTCCCTGGACAGTAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
37324927 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
37324971 TCTATCTCCCTGGGCAGCAGTGGAATAGATT-AA-A----GAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
37325009 TCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
37325053 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-T
* * *
37325098 CC-ATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGT-AGGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA-AT
* *
37325141 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATCGTGAAC
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
37325185 CCTATCTCCCTGAG-AAGCAGTGGAATAGGT
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGT
37325215 GGAAAATAGC
Statistics
Matches: 296, Mismatches: 25, Indels: 22
0.86 0.07 0.06
Matches are distributed among these distances:
38 33 0.11
39 2 0.01
40 1 0.00
42 1 0.00
43 6 0.02
44 248 0.84
45 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:37325122 original size:170 final size:170
Alignment explanation
Indices: 37324840--37325168 Score: 536
Period size: 170 Copynumber: 1.9 Consensus size: 170
37324830 GACCCCAGCC
* *
37324840 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGTAGTG
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTG
* * *
37324905 GAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-AGA
66 GAATAGGTTAAAGATTGAGAATCCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAG-
*
37324969 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGAATT
130 ATCCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGAATT
*
37325010 CTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTG
*
37325075 GAATAGGTTGAAGATTGAGAATTCC-ATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAG
66 GAATAGGTTAAAGATTGAGAA-TCCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAG
* *
37325139 GTCCTATCTCCCTGGTCAGCAGTGGAATAG
130 ATCCTATCTCCCTGGGCAGCAGTGGAATAG
37325169 GTTGAAGATC
Statistics
Matches: 147, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
170 142 0.97
171 5 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (170 bp):
CTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTG
GAATAGGTTAAAGATTGAGAATCCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAGA
TCCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGAATT
Found at i:37326024 original size:17 final size:18
Alignment explanation
Indices: 37326010--37326093 Score: 71
Period size: 19 Copynumber: 4.4 Consensus size: 18
37326000 ATAATCTTCG
37326010 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
37326028 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
* *
37326047 TATGATATATTCAATCTTAGA
1 -A-G-GATATGCAATCTTAGA
* *
37326068 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
37326087 A-GATATG
1 AGGATATG
37326094 ATTTTGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 32 0.58
21 16 0.29
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:37326036 original size:19 final size:19
Alignment explanation
Indices: 37326012--37326086 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
37326002 AATCTTCGAG
37326012 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
37326031 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37326050 GATATATTCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
37326071 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
37326087 AGATATGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 33 0.65
21 18 0.35
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:37326061 original size:21 final size:21
Alignment explanation
Indices: 37326013--37326075 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
37326003 ATCTTCGAGG
37326013 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
37326032 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
37326053 ATATTCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
37326074 AT
1 AT
37326076 GTAATCTTAG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 19 0.46
21 22 0.54
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.40
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:37326112 original size:22 final size:22
Alignment explanation
Indices: 37326025--37326109 Score: 74
Period size: 23 Copynumber: 4.0 Consensus size: 22
37326015 ATGCAATCTT
*
37326025 AGATATGATATGCAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
37326047 TATGATAT-AT-T-CAATCTT---
1 -A-GATATGATATGTAATCTTAGA
37326065 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
37326087 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
37326110 GATTTAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
16 5 0.10
17 3 0.06
18 1 0.02
19 6 0.12
21 7 0.13
22 9 0.17
23 16 0.31
24 5 0.10
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.40
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:37326119 original size:22 final size:23
Alignment explanation
Indices: 37326075--37326119 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
37326065 AGATATGATA
*
37326075 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
37326098 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
37326120 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:37326545 original size:3 final size:3
Alignment explanation
Indices: 37326537--37326573 Score: 58
Period size: 3 Copynumber: 12.3 Consensus size: 3
37326527 ATTAATTTTG
37326537 TTA TTA TTA TTA TTA TTA -TA TTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T
37326574 ACCTACATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.84
4 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:37326940 original size:51 final size:51
Alignment explanation
Indices: 37326831--37326942 Score: 122
Period size: 51 Copynumber: 2.2 Consensus size: 51
37326821 TTCACGTTTT
* * *
37326831 TATAT-TATACTTATATATTTCATTTTTTGTAAATGCATGAATATATTTTA
1 TATATATATATTTATATATTTCATTTTTTATAAATGCATGAATATATTATA
* * * *
37326881 TATGTATATATTTATAT-TTTCCTTATTTTCATAAATGCAT-TATGTATTATA
1 TATATATATATTTATATATTTCATT-TTTT-ATAAATGCATGAATATATTATA
37326932 TATATATATAT
1 TATATATATAT
37326943 AAGTTTTATA
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
50 10 0.20
51 32 0.63
52 9 0.18
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.54
Consensus pattern (51 bp):
TATATATATATTTATATATTTCATTTTTTATAAATGCATGAATATATTATA
Found at i:37331116 original size:46 final size:46
Alignment explanation
Indices: 37331063--37331155 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
37331053 TTAGTTCGTT
37331063 TCATATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAA
1 TCATATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAA
37331109 TCATATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAA
1 TCATATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAA
37331155 T
1 T
37331156 TCAGACTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.24, C:0.22, G:0.09, T:0.46
Consensus pattern (46 bp):
TCATATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAA
Found at i:37331165 original size:46 final size:46
Alignment explanation
Indices: 37331067--37331165 Score: 173
Period size: 46 Copynumber: 2.2 Consensus size: 46
37331057 TTCGTTTCAT
*
37331067 ATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAATCAT
1 ATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAATCAG
37331113 ATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAATTCAG
1 ATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAA-TCAG
37331160 A-CTTTT
1 ATCTTTT
37331166 TTTTCCTTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 47 0.92
47 4 0.08
ACGTcount: A:0.23, C:0.21, G:0.09, T:0.46
Consensus pattern (46 bp):
ATCTTTTGGTATTACATAATGTTGCACCCTCCTACTTTTTAATCAG
Found at i:37338288 original size:12 final size:12
Alignment explanation
Indices: 37338221--37338289 Score: 59
Period size: 12 Copynumber: 5.8 Consensus size: 12
37338211 TCATTATTTT
* *
37338221 TATTATTTTTAT
1 TATTATTATTAC
37338233 TATTATCT-TTAC
1 TATTAT-TATTAC
* *
37338245 TATTACTATTAG
1 TATTATTATTAC
* *
37338257 TATTATTACTAA
1 TATTATTATTAC
37338269 TATTATTATTAC
1 TATTATTATTAC
*
37338281 TATCATTAT
1 TATTATTAT
37338290 ATTTACACTT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
11 1 0.02
12 44 0.96
13 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.01, T:0.58
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:37338288 original size:15 final size:15
Alignment explanation
Indices: 37338229--37338289 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
37338219 TTTATTATTT
* *
37338229 TTATTATTATCTTTA
1 TTATTACTATCATTA
* * *
37338244 CTATTACTATTAGTA
1 TTATTACTATCATTA
37338259 TTATTACTAAT-ATTA
1 TTATTACT-ATCATTA
37338274 TTATTACTATCATTA
1 TTATTACTATCATTA
37338289 T
1 T
37338290 ATTTACACTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.56
Consensus pattern (15 bp):
TTATTACTATCATTA
Found at i:37341422 original size:39 final size:39
Alignment explanation
Indices: 37341367--37341449 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
37341357 ATCGTTGTAA
*
37341367 CTTAGTCTAGCTAACCTAGGGACTAACTTGTTAAATTGT
1 CTTAGTCTAGCTAACCTAGGGACTAACTTGCTAAATTGT
* *
37341406 TTTAGTCTAGCTAACCTAGGGACTAATTTGCTAAATTGT
1 CTTAGTCTAGCTAACCTAGGGACTAACTTGCTAAATTGT
37341445 CTTAG
1 CTTAG
37341450 ATTTTAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (39 bp):
CTTAGTCTAGCTAACCTAGGGACTAACTTGCTAAATTGT
Found at i:37343619 original size:144 final size:148
Alignment explanation
Indices: 37343315--37343716 Score: 509
Period size: 144 Copynumber: 2.7 Consensus size: 148
37343305 ATCTTGGGAA
*
37343315 AATTTTTTATTTAAAAAAATGGAAAGTTTAGATTTTTTTAAAATAAAAACCTATTTTTTAGTCAT
1 AATTTTTT-TTTAAAAAAA-GGAAAGTTTAGA-TTTTTAAAAATAAAAA-CTATTTTTTAGTCAT
*
37343380 TTTAAAGGAAAAGATTAAATTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAG
62 TTTAAAGGAAAAGATTAAATTTTT-AAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAA
*
37343445 CTTTGATTTTTAAGAAAAATAGT
126 ATTTGATTTTTAAGAAAAATAGT
*
37343468 AA-TTTTTTTTAAAAAAAGAGAAAATTTAGATTTTTAAAAATAAAAA-TATGTTTTTAGTCATTT
1 AATTTTTTTTTAAAAAAAG-GAAAGTTTAGATTTTTAAAAATAAAAACTAT-TTTTTAGTCATTT
* ***
37343531 TAAAGGAAAAG-TTTAATTTTT-TTTAAA-TTTTGATCTTTTTCAACTATTT-GAAATAAAAATT
64 TAAAGGAAAAGATTAAATTTTTAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAAATT
37343592 TGATTTTTAAGAAAAATAGT
129 TGATTTTTAAGAAAAATAGT
* **
37343612 GATTTTTTTTTTTAAAAAGTG--AGTTTAGATTTTTAAAAATAAAAATCTATTTTTTAGTCATTT
1 AATTTTTTTTTAAAAAAAG-GAAAGTTTAGATTTTTAAAAATAAAAA-CTATTTTTTAGTCATTT
* * *
37343675 TAAAGGAAACA-TTTAAATTTTGAAAACAAAATTTTGAT-TTTT
64 TAAAGGAAA-AGATTAAATTTT-TAAACAAAGTTTTGATCTTTT
37343717 AAGAAAAATA
Statistics
Matches: 221, Mismatches: 18, Indels: 26
0.83 0.07 0.10
Matches are distributed among these distances:
143 23 0.10
144 53 0.24
145 49 0.22
146 3 0.01
147 7 0.03
148 19 0.09
149 24 0.11
150 16 0.07
151 20 0.09
152 5 0.02
153 2 0.01
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (148 bp):
AATTTTTTTTTAAAAAAAGGAAAGTTTAGATTTTTAAAAATAAAAACTATTTTTTAGTCATTTTA
AAGGAAAAGATTAAATTTTTAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAAATTTG
ATTTTTAAGAAAAATAGT
Found at i:37343784 original size:119 final size:118
Alignment explanation
Indices: 37343577--37343836 Score: 368
Period size: 119 Copynumber: 2.2 Consensus size: 118
37343567 TTTTCAACTA
*** *
37343577 TTTGAAATA-AAAA-TTTGATTTTTAAGAAAAATAGTGATTTTTTTTTTTAAAAAGTGAGTTTAG
1 TTTGAAA-ACAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTTTTAAAAAAAAGGGAGTTTAG
* *
37343640 ATTTTTAAAAATAAAAATCTATTTTTTAGTCATTTTAAAGGAAACA-TTT-AAAT
65 ATTTTTAAAAATAAAAATCTATTTTTCAGTCATTTT-AAGGAAAAAGTTTAAAAT
37343693 TTTGAAAACAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTTTTAAAAAAAAGAGGAAGTTTA
1 TTTGAAAACAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTTTTAAAAAAAAG-GG-AGTTTA
*
37343758 GATTTTTAAAAATAAAAATCTGTTTTTCAGTCATTTTAAGGAAAAAGTTTAAAAT
64 GATTTTTAAAAATAAAAATCTATTTTTCAGTCATTTTAAGGAAAAAGTTTAAAAT
*
37343813 TTT-AAAACAAAGTTTTGATCTTTT
1 TTTGAAAACAAAATTTTGAT-TTTT
37343837 TCAACTATTT
Statistics
Matches: 129, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
115 1 0.01
116 11 0.09
117 38 0.29
118 9 0.07
119 59 0.46
120 11 0.09
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (118 bp):
TTTGAAAACAAAATTTTGATTTTTAAGAAAAATAGTGATTTTTTTTAAAAAAAAGGGAGTTTAGA
TTTTTAAAAATAAAAATCTATTTTTCAGTCATTTTAAGGAAAAAGTTTAAAAT
Found at i:37346865 original size:15 final size:15
Alignment explanation
Indices: 37346853--37346936 Score: 80
Period size: 15 Copynumber: 5.6 Consensus size: 15
37346843 AAGTGTAAAT
37346853 ATAATAATAGTAATA
1 ATAATAATAGTAATA
*
37346868 ATAATATTAGTAATA
1 ATAATAATAGTAATA
*
37346883 ATACTAATAGTAATA
1 ATAATAATAGTAATA
* *
37346898 GTAA-AGATAATAATA
1 ATAATA-ATAGTAATA
* **
37346913 AAAATAATAAAAATA
1 ATAATAATAGTAATA
*
37346928 ATAAAAATA
1 ATAATAATA
37346937 ATGAACAAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
14 1 0.02
15 54 0.96
16 1 0.02
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (15 bp):
ATAATAATAGTAATA
Found at i:37346868 original size:12 final size:12
Alignment explanation
Indices: 37346853--37346938 Score: 75
Period size: 12 Copynumber: 7.2 Consensus size: 12
37346843 AAGTGTAAAT
*
37346853 ATAATAATAGTA
1 ATAATAATAATA
*
37346865 ATAATAATATTA
1 ATAATAATAATA
* *
37346877 GTAATAATACTA
1 ATAATAATAATA
* *
37346889 ATAGTAATAGTA
1 ATAATAATAATA
37346901 A-AGATAATAATA
1 ATA-ATAATAATA
* *
37346913 AAAATAATAAAA
1 ATAATAATAATA
*
37346925 ATAATAAAAATA
1 ATAATAATAATA
37346937 AT
1 AT
37346939 GAACAAAATG
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
11 1 0.02
12 58 0.97
13 1 0.02
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (12 bp):
ATAATAATAATA
Found at i:37346920 original size:9 final size:9
Alignment explanation
Indices: 37346906--37346938 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
37346896 TAGTAAAGAT
37346906 AATAATAAA
1 AATAATAAA
37346915 AATAATAAA
1 AATAATAAA
37346924 AATAATAAA
1 AATAATAAA
37346933 AATAAT
1 AATAAT
37346939 GAACAAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AATAATAAA
Found at i:37348545 original size:44 final size:43
Alignment explanation
Indices: 37348443--37348557 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 43
37348433 TCTTCTGTCT
*
37348443 GCTCCACTACAACTTCAGGGAGATAAGA--CTGGATGCTATTT
1 GCTCCACTACAACTTCAGGGAGATAAGATTCTGGATGCTATTC
* * **
37348484 GCTCTACTACAACTTCAGAGAGATAAGATTTCTGG-TTTTAATTC
1 GCTCCACTACAACTTCAGGGAGATAAGA-TTCTGGATGCT-ATTC
* *
37348528 GCTCCACTGCAACTTCAGGGAGATAGGATT
1 GCTCCACTACAACTTCAGGGAGATAAGATT
37348558 GGCTTCTCCT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
41 26 0.43
43 4 0.07
44 31 0.51
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (43 bp):
GCTCCACTACAACTTCAGGGAGATAAGATTCTGGATGCTATTC
Found at i:37348810 original size:98 final size:98
Alignment explanation
Indices: 37348583--37349140 Score: 521
Period size: 98 Copynumber: 5.7 Consensus size: 98
37348573 TTTAACTGCA
** * * * * * * * **
37348583 AATGTCGGGGAATTAAGATTTGCCATCGTAGCTTCAATATATTCCACTACACCGTCAGGGAAGTA
1 AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAACG-CCTGGAAGTA
* * * *
37348648 CGATTCG-CAGTTGTGGCTTCAATATTTTAAATTGC
65 AGATTCGCCA-TTAT-GCCTCAATCTTTTAAATTGC
* * * ** *
37348683 AATGTCAGGGAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCTGCTGCAACGCCTGGAAGTAG
1 AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAACGCCTGGAAGTAA
**
37348748 GATTCGCCATTATGGCCTTGATCTTTT-AATTGC
66 GATTCGCCATTAT-GCCTCAATCTTTTAAATTGC
* * ** * * *
37348781 AATGTCGAGGAAACAAGATTTTCCGTTGTAACTTCAATCTGTTCCACTGCAACGCCAGGGAGTAA
1 AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAACGCCTGGAAGTAA
* *
37348846 GATTCGCCGTTATGGCCTCGATCTTTT-AATTGC
66 GATTCGCCATTAT-GCCTCAATCTTTTAAATTGC
* * * *
37348879 AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTTCCACTGCACCTCCAGGGAAGTA
1 AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAACGCC-TGGAAGTA
** * * *
37348944 AGATTCGCTGTTGTGACTTCAATCTTTTAAATTAC
65 AGATTCGCCATTATG-CCTCAATCTTTTAAATTGC
*
37348979 AATGTCGGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGC-ACTGCCTAGGAAG
1 AATGTC-GGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAAC-GCCT-GGAAG
37349043 T-A-A---G--ATT-TGCCTCAATCTTTTAAATTGC
63 TAAGATTCGCCATTATGCCTCAATCTTTTAAATTGC
* *
37349071 AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTTCCATTGC-ACTGCCTGGGAAGT
1 AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAAC-GCCT-GGAAGT
37349135 AAGATT
64 AAGATT
37349141 TGCCGTTGTG
Statistics
Matches: 387, Mismatches: 60, Indels: 27
0.82 0.13 0.06
Matches are distributed among these distances:
91 54 0.14
92 24 0.06
93 3 0.01
94 2 0.01
96 1 0.00
98 138 0.36
99 56 0.14
100 59 0.15
101 50 0.13
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (98 bp):
AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCAACGCCTGGAAGTAA
GATTCGCCATTATGCCTCAATCTTTTAAATTGC
Found at i:37349094 original size:192 final size:190
Alignment explanation
Indices: 37348661--37349163 Score: 568
Period size: 192 Copynumber: 2.6 Consensus size: 190
37348651 TTCGCAGTTG
* * * * * *
37348661 TGGCTTCAATATTTTAAATTGCAATGTCAGGGAAGCAAGATTCGCCATTGTAGCTTCAATCTATT
1 TGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTT
** * * * * * * * *
37348726 CTGCTGCAACGCCTGGAAGTAGGATTCGCCATTATGGCCTTGATCTTTTAATTGCAATGTCGAGG
66 CCACTGC-ACTCCGGGAAGTAAGATTCGCCGTTGTGGACTTAATCTTTTAATTACAATGTCGAGG
** *
37348791 AAACAAGATTTTCCGTTGTAACTTCAATCTGTTCCACTGCAACGCCAGGGAGTAAGATTCGCCGT
130 AAACAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGCAACGCCAGGAAGTAAGA-----C-T
37348856 TA
189 TA
*
37348858 TGGCCTCGATCTTTT-AATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTT
1 TGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTT
*
37348922 CCACTGCACCTCCAGGGAAGTAAGATTCGCTGTTGT-GACTTCAATCTTTTAAATTACAATGTCG
66 CCACTGCA-CTCC-GGGAAGTAAGATTCGCCGTTGTGGACTT-AATCTTTT-AATTACAATGTC-
* * * *
37348986 GGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGCTGC-ACTGCCTAGGAAGTAAGA-T
126 GAGGAAACAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGCAAC-GCC-AGGAAGTAAGACT
37349049 T-
189 TA
37349050 T-GCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTT
1 TGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTT
* * *
37349114 CCATTGCACTGCCTGGGAAGTAAGATTTGCCGTTGTGGTCTTAATCTTTT
66 CCACTGCACT-CC-GGGAAGTAAGATTCGCCGTTGTGGACTTAATCTTTT
37349164 CATTGGAAAC
Statistics
Matches: 265, Mismatches: 31, Indels: 25
0.83 0.10 0.08
Matches are distributed among these distances:
191 14 0.05
192 87 0.33
193 6 0.02
195 1 0.00
196 57 0.22
197 36 0.14
198 13 0.05
199 41 0.15
200 10 0.04
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (190 bp):
TGGCCTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTT
CCACTGCACTCCGGGAAGTAAGATTCGCCGTTGTGGACTTAATCTTTTAATTACAATGTCGAGGA
AACAAGATTCGCCGTTGTAACTTCAATCTGTTCCACTGCAACGCCAGGAAGTAAGACTTA
Found at i:37349122 original size:91 final size:92
Alignment explanation
Indices: 37348962--37349144 Score: 314
Period size: 91 Copynumber: 2.0 Consensus size: 92
37348952 TGTTGTGACT
* *
37348962 TCAATCTTTTAAATTACAATGTCGGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCGC
1 TCAATCTTTTAAATTACAATGTCGGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTTCCAC
37349027 TGCACTGCCTAGGAAGTAAGATTTGCC
66 TGCACTGCCTAGGAAGTAAGATTTGCC
* *
37349054 TCAATCTTTTAAATTGCAATGTC-GGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTTCCAT
1 TCAATCTTTTAAATTACAATGTCGGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTTCCAC
*
37349118 TGCACTGCCTGGGAAGTAAGATTTGCC
66 TGCACTGCCTAGGAAGTAAGATTTGCC
37349145 GTTGTGGTCT
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
91 64 0.74
92 22 0.26
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (92 bp):
TCAATCTTTTAAATTACAATGTCGGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATATGTTCCAC
TGCACTGCCTAGGAAGTAAGATTTGCC
Found at i:37354545 original size:30 final size:30
Alignment explanation
Indices: 37354504--37354627 Score: 176
Period size: 30 Copynumber: 4.1 Consensus size: 30
37354494 GAAATATATA
*
37354504 TATATACATATACAAATCAATTCGGCAATG
1 TATATCCATATACAAATCAATTCGGCAATG
*
37354534 TATATCTATATACAAATCAATTCGGCAATG
1 TATATCCATATACAAATCAATTCGGCAATG
* * *
37354564 CATATCGATATACAAATCAATTCAGCAATG
1 TATATCCATATACAAATCAATTCGGCAATG
* * *
37354594 TATATCCATATAAAAATCAATTCGGTAGTG
1 TATATCCATATACAAATCAATTCGGCAATG
37354624 TATA
1 TATA
37354628 AAATATGTAC
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.31
Consensus pattern (30 bp):
TATATCCATATACAAATCAATTCGGCAATG
Found at i:37355291 original size:16 final size:16
Alignment explanation
Indices: 37355272--37355306 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
37355262 ACCCAAAGTG
37355272 TTCATCAATGGTGTCT
1 TTCATCAATGGTGTCT
*
37355288 TTCATTAATGGTGTCT
1 TTCATCAATGGTGTCT
37355304 TTC
1 TTC
37355307 TTCTTCAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (16 bp):
TTCATCAATGGTGTCT
Found at i:37360941 original size:23 final size:23
Alignment explanation
Indices: 37360915--37361142 Score: 89
Period size: 23 Copynumber: 9.7 Consensus size: 23
37360905 CCTCATACAT
37360915 CAAATTGGACAGCATTTATATAC
1 CAAATTGGACAGCATTTATATAC
* *
37360938 CAAACTAGACAGCATTT-TCATAC
1 CAAATTGGACAGCATTTAT-ATAC
37360961 CAAAATTTGGACAGC--TTATATAC
1 C-AAA-TTGGACAGCATTTATATAC
*
37360984 AACAAATT-GAGCAGCA--AATATAC
1 --CAAATTGGA-CAGCATTTATATAC
* * *
37361007 AACAATT-GAGCAGCATTTTTACAC
1 CA-AATTGGA-CAGCATTTATATAC
37361031 CAAAAATTGGACAGC--TTATATAC
1 C--AAATTGGACAGCATTTATATAC
* ** * *
37361054 AACAAATTGGGCAGCAAATATACAA
1 --CAAATTGGACAGCATTTATATAC
* * *
37361079 CAAATT-GAGCAACATTTTTACATC
1 CAAATTGGA-CAGCATTTATATA-C
* *
37361103 AAAATTGGACAGCATATATATAC
1 CAAATTGGACAGCATTTATATAC
*
37361126 AACAAATTGGGCAGCAT
1 --CAAATTGGACAGCAT
37361143 AAATACAACA
Statistics
Matches: 153, Mismatches: 29, Indels: 44
0.68 0.13 0.19
Matches are distributed among these distances:
21 1 0.01
22 16 0.10
23 71 0.46
24 25 0.16
25 37 0.24
26 3 0.02
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.25
Consensus pattern (23 bp):
CAAATTGGACAGCATTTATATAC
Found at i:37361046 original size:70 final size:71
Alignment explanation
Indices: 37360947--37361167 Score: 322
Period size: 70 Copynumber: 3.1 Consensus size: 71
37360937 CCAAACTAGA
* * * *
37360947 CAGCATTTTCATACCAAAATTTGGACAGCTTATATACAACAAATTGAGCAGCAAATATACAAC-A
1 CAGCATTTTTACACCAAAAATTGGACAGCTTATATACAACAAATTGGGCAGCAAATATACAACAA
37361011 ATTGAG
66 ATTGAG
37361017 CAGCATTTTTACACCAAAAATTGGACAGCTTATATACAACAAATTGGGCAGCAAATATACAACAA
1 CAGCATTTTTACACCAAAAATTGGACAGCTTATATACAACAAATTGGGCAGCAAATATACAACAA
37361082 ATTGAG
66 ATTGAG
* *
37361088 CAACATTTTTACATC-AAAATTGGACAGCATATATATACAACAAATTGGGCAGCATAA-ATACAA
1 CAGCATTTTTACACCAAAAATTGGACAGC-T-TATATACAACAAATTGGGCAGCA-AATATACAA
*
37361151 CAAATTGGG
63 CAAATTGAG
*
37361160 CATCATTT
1 CAGCATTT
37361168 AAGCATCAAA
Statistics
Matches: 139, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
70 72 0.52
71 21 0.15
72 44 0.32
73 2 0.01
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (71 bp):
CAGCATTTTTACACCAAAAATTGGACAGCTTATATACAACAAATTGGGCAGCAAATATACAACAA
ATTGAG
Found at i:37361152 original size:23 final size:23
Alignment explanation
Indices: 37360980--37361161 Score: 136
Period size: 23 Copynumber: 7.7 Consensus size: 23
37360970 GACAGCTTAT
*
37360980 ATACAACAAATTGAGCAGCA-AA
1 ATACAACAAATTGGGCAGCATAA
* **
37361002 TATACAAC-AATTGAGCAGCATTT
1 -ATACAACAAATTGGGCAGCATAA
* * * * *
37361025 TTACACCAAAAATTGGACAGCTTAT
1 ATACA--ACAAATTGGGCAGCATAA
37361050 ATACAACAAATTGGGCAGCA-AA
1 ATACAACAAATTGGGCAGCATAA
* * **
37361072 TATACAACAAATTGAGCAACATTT
1 -ATACAACAAATTGGGCAGCATAA
* * *
37361096 TTACATCAAAATTGGACAGCATATA
1 ATACAAC-AAATTGGGCAGCATA-A
37361121 TATACAACAAATTGGGCAGCATAA
1 -ATACAACAAATTGGGCAGCATAA
37361145 ATACAACAAATTGGGCA
1 ATACAACAAATTGGGCA
37361162 TCATTTAAGC
Statistics
Matches: 123, Mismatches: 27, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
22 17 0.14
23 59 0.48
24 13 0.11
25 29 0.24
26 5 0.04
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.23
Consensus pattern (23 bp):
ATACAACAAATTGGGCAGCATAA
Found at i:37362802 original size:26 final size:27
Alignment explanation
Indices: 37362767--37362817 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
37362757 ATGTTTTGTT
37362767 TTATTATAACATATATTAT-TATATTA
1 TTATTATAACATATATTATATATATTA
* * *
37362793 TTATTTTAACTTTTATTATATATAT
1 TTATTATAACATATATTATATATAT
37362818 AAATCACATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (27 bp):
TTATTATAACATATATTATATATATTA
Found at i:37366110 original size:22 final size:23
Alignment explanation
Indices: 37366076--37366119 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
37366066 GTGAGGAGGT
**
37366076 TATCTTATGAATACGTT-AAATC
1 TATCTTAAAAATACGTTGAAATC
*
37366098 TATCTTAAAAATATGTTGAAAT
1 TATCTTAAAAATACGTTGAAAT
37366120 GGATTGGTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (23 bp):
TATCTTAAAAATACGTTGAAATC
Found at i:37366159 original size:33 final size:33
Alignment explanation
Indices: 37366117--37366184 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
37366107 AATATGTTGA
*
37366117 AATGGATTGGTTGCGTTGGATTGGTCTTGGTTT
1 AATGGATTGGTTGCGTTGGATTGGTCTCGGTTT
*
37366150 AATGGATTGGTTGTGTTGGATTGGTCTCGGTTT
1 AATGGATTGGTTGCGTTGGATTGGTCTCGGTTT
37366183 AA
1 AA
37366185 AATTGCAGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.15, C:0.06, G:0.35, T:0.44
Consensus pattern (33 bp):
AATGGATTGGTTGCGTTGGATTGGTCTCGGTTT
Found at i:37366729 original size:27 final size:26
Alignment explanation
Indices: 37366714--37366783 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 26
37366704 TTACCCTACA
*
37366714 GGGGTATTATGGTCATTTAACCTTAT
1 GGGGTATTACGGTCATTTAACCTTAT
37366740 GAGGGTATTACGGTCATTTAACCTTAT
1 G-GGGTATTACGGTCATTTAACCTTAT
37366767 GGAGGTATTACGGTCAT
1 GG-GGTATTACGGTCAT
37366784 CTTACAACCT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (26 bp):
GGGGTATTACGGTCATTTAACCTTAT
Found at i:37371854 original size:28 final size:28
Alignment explanation
Indices: 37371813--37371866 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
37371803 CTTTGTAAAA
37371813 TTTGCACTTCGGTGCTTATTGATATTAT
1 TTTGCACTTCGGTGCTTATTGATATTAT
* * *
37371841 TTTGCATTTTGGTGCTTATTGTTATT
1 TTTGCACTTCGGTGCTTATTGATATT
37371867 TTTACTTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.15, C:0.11, G:0.19, T:0.56
Consensus pattern (28 bp):
TTTGCACTTCGGTGCTTATTGATATTAT
Found at i:37376602 original size:50 final size:50
Alignment explanation
Indices: 37376527--37376762 Score: 260
Period size: 50 Copynumber: 4.7 Consensus size: 50
37376517 GGTAAAGAAA
* * *
37376527 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGACGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * *
37376577 TCCCATGTAAGACCATGTCTGGGACATGCCGTTGGCACCGAGATGAGGGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * **
37376627 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * ** * * **
37376677 TCTCATGTAAGACCATATCTGGGGTATGGCATTGGCA--GTATATGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
*
37376726 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37376763 TGTTATTATA
Statistics
Matches: 157, Mismatches: 28, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
48 1 0.01
49 39 0.25
50 117 0.75
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:37378975 original size:18 final size:18
Alignment explanation
Indices: 37378948--37378984 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
37378938 TGTAGATTTC
37378948 CAAAAATGGAAATGGAAA
1 CAAAAATGGAAATGGAAA
*
37378966 CAAAATTGGAAATGGAAA
1 CAAAAATGGAAATGGAAA
37378984 C
1 C
37378985 TTGTAATCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.57, C:0.08, G:0.22, T:0.14
Consensus pattern (18 bp):
CAAAAATGGAAATGGAAA
Found at i:37379135 original size:18 final size:16
Alignment explanation
Indices: 37379112--37379150 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
37379102 AATTTTCTCG
37379112 AAATTTTACCAGGGGTTA
1 AAATTTTA-CAGGGG-TA
*
37379130 AAATTTTACTGGGGTA
1 AAATTTTACAGGGGTA
37379146 AAATT
1 AAATT
37379151 GGGGTGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 5 0.25
18 8 0.40
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.36
Consensus pattern (16 bp):
AAATTTTACAGGGGTA
Found at i:37379430 original size:34 final size:34
Alignment explanation
Indices: 37379392--37379460 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
37379382 ATTGTTTTTC
37379392 TAGTGGAAATAAATTTCTACAATTCTACAAGGGT
1 TAGTGGAAATAAATTTCTACAATTCTACAAGGGT
37379426 TAGTGGAAATAAATTTCTACAATTCTACAAGGGT
1 TAGTGGAAATAAATTTCTACAATTCTACAAGGGT
37379460 T
1 T
37379461 CTATTTTCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (34 bp):
TAGTGGAAATAAATTTCTACAATTCTACAAGGGT
Found at i:37382082 original size:19 final size:18
Alignment explanation
Indices: 37382060--37382117 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 18
37382050 TTTATAACTT
37382060 ATTATCAAGATTTATAAAA
1 ATTAT-AAGATTTATAAAA
* *
37382079 ATTATAAAATTCAGTAAAA
1 ATTATAAGATTTA-TAAAA
*
37382098 ATTTATAAAGAATTATAAAA
1 A-TTAT-AAGATTTATAAAA
37382118 TAATTAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 6 0.19
19 11 0.35
20 9 0.29
21 5 0.16
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.34
Consensus pattern (18 bp):
ATTATAAGATTTATAAAA
Found at i:37382113 original size:49 final size:47
Alignment explanation
Indices: 37382025--37382135 Score: 107
Period size: 49 Copynumber: 2.3 Consensus size: 47
37382015 TTCTAAAAAT
* * * *** * *
37382025 TAAAAAATAAAAAATTATTAAAAATTTTATAACTTATTATCAAGATTTA
1 TAAAAATTATAAAATTAGTAAAAATTTTATAAAGAATTAT-AA-AATAA
37382074 TAAAAATTATAAAATTCAGTAAAAA-TTTATAAAGAATTATAAAATAA
1 TAAAAATTATAAAATT-AGTAAAAATTTTATAAAGAATTATAAAATAA
*
37382121 TTAAAATTATAAAAT
1 TAAAAATTATAAAAT
37382136 AAAAAAACCT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
47 17 0.33
48 2 0.04
49 26 0.50
50 7 0.13
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (47 bp):
TAAAAATTATAAAATTAGTAAAAATTTTATAAAGAATTATAAAATAA
Found at i:37382169 original size:9 final size:9
Alignment explanation
Indices: 37382011--37382134 Score: 69
Period size: 9 Copynumber: 13.3 Consensus size: 9
37382001 GAATCATTCT
*
37382011 AAAATTCTA
1 AAAATTATA
37382020 AAAATTA-A
1 AAAATTATA
37382028 AAAA-TA-A
1 AAAATTATA
37382035 AAAATTATTA
1 AAAATTA-TA
37382045 AAAATTTTATA
1 AAAA--TTATA
**
37382056 ACTTATTATCA
1 A-AAATTAT-A
* *
37382067 AGATTTATA
1 AAAATTATA
37382076 AAAATTAT-
1 AAAATTATA
37382084 AAAATTCAGTA
1 AAAATT-A-TA
37382095 AAAATTTATA
1 AAAA-TTATA
37382105 AAGAATTAT-
1 AA-AATTATA
* *
37382114 AAAATAATT
1 AAAATTATA
37382123 AAAATTATA
1 AAAATTATA
37382132 AAA
1 AAA
37382135 TAAAAAAACC
Statistics
Matches: 91, Mismatches: 11, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
7 7 0.08
8 18 0.20
9 26 0.29
10 22 0.24
11 12 0.13
12 6 0.07
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (9 bp):
AAAATTATA
Found at i:37387186 original size:24 final size:25
Alignment explanation
Indices: 37387142--37387192 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
37387132 ATCAGCATTA
**
37387142 TTATAATATGAATATTATAA-TATT
1 TTATAATAAAAATATTATAATTATT
37387166 TTATAATAAAAAT-TTATTAATTATT
1 TTATAATAAAAATATTA-TAATTATT
37387191 TT
1 TT
37387193 GATGTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 3 0.13
24 14 0.61
25 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (25 bp):
TTATAATAAAAATATTATAATTATT
Found at i:37388807 original size:274 final size:277
Alignment explanation
Indices: 37388315--37388873 Score: 874
Period size: 274 Copynumber: 2.0 Consensus size: 277
37388305 TTACTTAGTG
*
37388315 ATTTAAAATATAGGTGAAAATTATCTTTCAATTTAAACTAAAAAAAGTTACATAATCCTCTTATT
1 ATTTAAAATATAGGTGAAAATTATCTTTCAACTTAAACTAAAAAAAGTTACATAATCCTCTTATT
* * * *
37388380 TATTAAGGTTATCAAATATCTTTTTATTTAAATCTCATGTGATAATTACGTAATAAATGAGCTAT
66 TATCAAGGCTATCAAATATCTTTTTATTTAAAGCTCATGTGATAATTACGTAATAAATGAGATAT
* * *
37388445 CACGCCATTTTTATGTAAACTAAACAGGCCATTAGTAAAATATACAAATTGGATTACAAATCCAA
131 CACGCCAGTTTCAAGTAAACTAAACAGGCCATTAGTAAAATATACAAATTGGATTACAAATCCAA
* * *
37388510 TCAATAAATCTCTATCTTGACCAAAATCAAACTATTACAAGTAAAAATTCTTATCACAAGGTTAT
196 TCAATAAATCTCTATCATGACCAAAATAAAACTATTACAAGTAAAAATTCTTATCACAAGATTAT
37388575 GCGCGTAAAAATCATGT
261 GCGCGTAAAAATCATGT
* * *
37388592 ATTTAAAATATAGGTGAAAATTATCTTTCAACTT-AAGT-AAAAAAGTTACATGAT-CTTTTATT
1 ATTTAAAATATAGGTGAAAATTATCTTTCAACTTAAACTAAAAAAAGTTACATAATCCTCTTATT
37388654 TATCAAGGCTATCAAATATCTTTTTATTTAAAGCTCATGTGATAATTACGTAATAAATGAGATAT
66 TATCAAGGCTATCAAATATCTTTTTATTTAAAGCTCATGTGATAATTACGTAATAAATGAGATAT
* ** *
37388719 CACGCCGGTTTCAAGTAAACTAAATGGGCCATTAGTATAATATACAAA-TGGAATTACAAATCCA
131 CACGCCAGTTTCAAGTAAACTAAACAGGCCATTAGTAAAATATACAAATTGG-ATTACAAATCCA
* * *
37388783 ATCAATAAATCTGTATCATGACCAAAATAAAACTATTACAAGTAAGAATTTTTATCACAAGATTA
195 ATCAATAAATCTCTATCATGACCAAAATAAAACTATTACAAGTAAAAATTCTTATCACAAGATTA
* *
37388848 TGCGTGTGAAAATCATGT
260 TGCGCGTAAAAATCATGT
37388866 ATTTAAAA
1 ATTTAAAA
37388874 AACATGTGTG
Statistics
Matches: 258, Mismatches: 23, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
273 3 0.01
274 204 0.79
275 15 0.06
276 3 0.01
277 33 0.13
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (277 bp):
ATTTAAAATATAGGTGAAAATTATCTTTCAACTTAAACTAAAAAAAGTTACATAATCCTCTTATT
TATCAAGGCTATCAAATATCTTTTTATTTAAAGCTCATGTGATAATTACGTAATAAATGAGATAT
CACGCCAGTTTCAAGTAAACTAAACAGGCCATTAGTAAAATATACAAATTGGATTACAAATCCAA
TCAATAAATCTCTATCATGACCAAAATAAAACTATTACAAGTAAAAATTCTTATCACAAGATTAT
GCGCGTAAAAATCATGT
Found at i:37393027 original size:12 final size:12
Alignment explanation
Indices: 37393012--37393049 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
37393002 CTGATTATGT
37393012 ATTTGATATTGC
1 ATTTGATATTGC
37393024 ATTTGACT-TTGC
1 ATTTGA-TATTGC
*
37393036 ATTTGAAATTGC
1 ATTTGATATTGC
37393048 AT
1 AT
37393050 CTTACTCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 22 0.96
13 1 0.04
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (12 bp):
ATTTGATATTGC
Found at i:37396967 original size:21 final size:20
Alignment explanation
Indices: 37396936--37396974 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
37396926 TATAAATTCA
37396936 AAAAATTTTAAAAAATATTT
1 AAAAATTTTAAAAAATATTT
*
37396956 AAAAATTATTAAAATATAT
1 AAAAATT-TTAAAAAATAT
37396975 AAAAATGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATTTTAAAAAATATTT
Found at i:37396969 original size:29 final size:30
Alignment explanation
Indices: 37396920--37396979 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
37396910 AAATTTTATT
* *
37396920 AATATTTATAAATTCAAAAAAT-TTTAAAA
1 AATATTTAAAAATTCAAAAAATATATAAAA
*
37396949 AATATTTAAAAATT-ATTAAAATATATAAAA
1 AATATTTAAAAATTCA-AAAAATATATAAAA
37396979 A
1 A
37396980 TGGAAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 1 0.04
29 18 0.69
30 7 0.27
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (30 bp):
AATATTTAAAAATTCAAAAAATATATAAAA
Found at i:37404922 original size:84 final size:84
Alignment explanation
Indices: 37404776--37404935 Score: 241
Period size: 84 Copynumber: 1.9 Consensus size: 84
37404766 TAAGTCTTTG
* * *
37404776 TTTGGAAACAAATTAATATTGAATAAAATCTTGTTAAACAACGGGAATAAATCCCAAAATAGATT
1 TTTGAAAACAAATTAAAATCGAATAAAATCTTGTTAAACAACGGGAATAAATCCCAAAATAGATT
37404841 TAATTTAATTTATTTCTAA
66 TAATTTAATTTATTTCTAA
* * *
37404860 TTTGAAAACAAAATTAAAATCGAATAAAATCTTGTT-ATCGACGGGAATAAATCCCGAAATAGAT
1 TTTGAAAAC-AAATTAAAATCGAATAAAATCTTGTTAAACAACGGGAATAAATCCCAAAATAGAT
*
37404924 TTTATTTAATTT
65 TTAATTTAATTT
37404936 TAATTTATCA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
84 44 0.65
85 24 0.35
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.35
Consensus pattern (84 bp):
TTTGAAAACAAATTAAAATCGAATAAAATCTTGTTAAACAACGGGAATAAATCCCAAAATAGATT
TAATTTAATTTATTTCTAA
Found at i:37405045 original size:85 final size:87
Alignment explanation
Indices: 37404902--37405101 Score: 257
Period size: 86 Copynumber: 2.3 Consensus size: 87
37404892 TGTTATCGAC
* *
37404902 GGGAATAAATCCCGAAATAGATTTTA-TTTAATTTTAATTTATCATTTTGGAAATAAAATAAAAA
1 GGGAATAAATCCCGAAACAGATTTTATTTTAATTTTAATATATCATTTTGGAAATAAAAT-AAAA
37404966 AT-AATAAAATCCATTGAACGGT
65 ATGAATAAAATCCATTGAACGGT
* * *
37404988 GGGAATAAA-CCCCAAACAGATTTTATTTTAA-TTTAA-ATACTCGTTTTGGAAATAAAATCAAA
1 GGGAATAAATCCCGAAACAGATTTTATTTTAATTTTAATATA-TCATTTTGGAAATAAAATAAAA
* *
37405050 TTGGAATAAAATCCGTTGAACGGT
65 AT-GAATAAAATCCATTGAACGGT
* *
37405074 AGGAATAAATCTCGAAACAGATTTTATT
1 GGGAATAAATCCCGAAACAGATTTTATT
37405102 CACTTTTAAA
Statistics
Matches: 99, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
84 6 0.06
85 36 0.36
86 41 0.41
87 16 0.16
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (87 bp):
GGGAATAAATCCCGAAACAGATTTTATTTTAATTTTAATATATCATTTTGGAAATAAAATAAAAA
TGAATAAAATCCATTGAACGGT
Found at i:37409254 original size:23 final size:24
Alignment explanation
Indices: 37409224--37409283 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 24
37409214 CTAAACTCTA
*
37409224 ATTTTTTTTTGA-AAAGTGTATTT
1 ATTTTTTTTTGACAAAGTGTAATT
37409247 ATTTTTTTTGGTGACAAAGTGTAATT
1 ATTTTTTTT--TGACAAAGTGTAATT
*
37409273 CTTTTTCTTTT
1 ATTTTT-TTTT
37409284 TATGGTTCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 9 0.29
25 4 0.13
26 15 0.48
27 3 0.10
ACGTcount: A:0.22, C:0.05, G:0.13, T:0.60
Consensus pattern (24 bp):
ATTTTTTTTTGACAAAGTGTAATT
Found at i:37416628 original size:15 final size:15
Alignment explanation
Indices: 37416605--37416639 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
37416595 ATCCAAATTC
*
37416605 TTTATTAGCCAGAGT
1 TTTAATAGCCAGAGT
37416620 TTTAATAGCCAGAGT
1 TTTAATAGCCAGAGT
37416635 TTTAA
1 TTTAA
37416640 AAGTAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (15 bp):
TTTAATAGCCAGAGT
Found at i:37421376 original size:19 final size:19
Alignment explanation
Indices: 37421332--37421377 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
37421322 TTTTGTGCTC
*
37421332 AACTTACATTTTCTTTATT
1 AACTTACATATTCTTTATT
*
37421351 AAATTACATATTCTTTATT
1 AACTTACATATTCTTTATT
*
37421370 AGCTTACA
1 AACTTACA
37421378 CATTTACTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.02, T:0.50
Consensus pattern (19 bp):
AACTTACATATTCTTTATT
Found at i:37423756 original size:3 final size:3
Alignment explanation
Indices: 37423710--37423740 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
37423700 TTTTATCCTC
37423710 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
37423741 TTAACAATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:37424345 original size:36 final size:36
Alignment explanation
Indices: 37424298--37424369 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
37424288 TCGCTAAACC
37424298 AGCTTTTCATCTTCAATAATGGCTTCCATGGGTCCT
1 AGCTTTTCATCTTCAATAATGGCTTCCATGGGTCCT
37424334 AGCTTTTCATCTTCAATAATGGCTTCCATGGGTCCT
1 AGCTTTTCATCTTCAATAATGGCTTCCATGGGTCCT
37424370 CACTTTAGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (36 bp):
AGCTTTTCATCTTCAATAATGGCTTCCATGGGTCCT
Found at i:37424768 original size:40 final size:40
Alignment explanation
Indices: 37424713--37424850 Score: 127
Period size: 40 Copynumber: 3.5 Consensus size: 40
37424703 GCGTTTGTAC
* *
37424713 AAAAAACGCCGCTAAAAATCGAGCATTACCAGCGCTTTCC
1 AAAAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTCA
* * * *
37424753 CAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTAT-A
1 AAAAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTT-TCA
** * * * *
37424793 GGAAAGCGCCGCTAAAAAT-GATCATTAGCAGCGTTTTTCT
1 AAAAAACGCCGCTAAAAATCGAGCATTAGCAGCG-CTTTCA
*
37424833 AAAAAACGCCGCAAAAAA
1 AAAAAACGCCGCTAAAAA
37424851 CCTAAGCCCA
Statistics
Matches: 76, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
39 12 0.16
40 63 0.83
41 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (40 bp):
AAAAAACGCCGCTAAAAATCGAGCATTAGCAGCGCTTTCA
Found at i:37425788 original size:21 final size:21
Alignment explanation
Indices: 37425754--37425815 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
37425744 ATTGGGGTAA
37425754 TTAGGG-TTATGAGTTTGGGA-
1 TTAGGGTTTA-GAGTTTGGGAT
* *
37425774 TTAGAGGTTTAGAGTTAGAGAT
1 TTAG-GGTTTAGAGTTTGGGAT
37425796 TTAGGGTTTAGAGATTTGGG
1 TTAGGGTTTAGAG-TTTGGG
37425816 GTCGAGTTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 4 0.12
21 19 0.56
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39
Consensus pattern (21 bp):
TTAGGGTTTAGAGTTTGGGAT
Found at i:37426433 original size:12 final size:12
Alignment explanation
Indices: 37426416--37426448 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
37426406 CGTGATTTAA
37426416 AATTTTAAAATG
1 AATTTTAAAATG
37426428 AATTTTAAAA-G
1 AATTTTAAAATG
37426439 -ATTTTAAAAT
1 AATTTTAAAAT
37426449 TTTTTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 9 0.45
11 1 0.05
12 10 0.50
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (12 bp):
AATTTTAAAATG
Found at i:37426444 original size:10 final size:10
Alignment explanation
Indices: 37426417--37426476 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
37426407 GTGATTTAAA
37426417 ATTTTAAAATG
1 ATTTTAAAA-G
37426428 AATTTTAAAAG
1 -ATTTTAAAAG
37426439 ATTTTAAAA-
1 ATTTTAAAAG
* * *
37426448 TTTTTTAAAT
1 ATTTTAAAAG
*
37426458 ATTTAAAAAAG
1 ATTT-TAAAAG
37426469 ATTTTAAA
1 ATTTTAAA
37426477 CATTTATTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
9 7 0.18
10 15 0.38
11 8 0.21
12 9 0.23
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (10 bp):
ATTTTAAAAG
Found at i:37426447 original size:30 final size:29
Alignment explanation
Indices: 37426411--37426481 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 29
37426401 TTTTTCGTGA
*
37426411 TTTAAAATTTTAAAATGAATTT-TAAAAGAT
1 TTTAAAATTTTAAAAT--ATTTAAAAAAGAT
*
37426441 TTTAAAATTTTTTAAATATTTAAAAAAGAT
1 TTTAAAA-TTTTAAAATATTTAAAAAAGAT
37426471 TTTAAACATTT
1 TTTAAA-ATTT
37426482 ATTTTTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
29 4 0.11
30 23 0.64
31 9 0.25
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.46
Consensus pattern (29 bp):
TTTAAAATTTTAAAATATTTAAAAAAGAT
Found at i:37426752 original size:19 final size:19
Alignment explanation
Indices: 37426729--37426780 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
37426719 TATATAAAAA
37426729 TTTTAAAATTTATC-TAAT
1 TTTTAAAATTTATCTTAAT
37426747 TCTTTAAAATATTA-CTTAAT
1 T-TTTAAAAT-TTATCTTAAT
37426767 TTTTCAAAATTTAT
1 TTTT-AAAATTTAT
37426781 TTATTTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
18 1 0.03
19 15 0.52
20 13 0.45
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTAAAATTTATCTTAAT
Found at i:37432363 original size:26 final size:26
Alignment explanation
Indices: 37432334--37432386 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
37432324 TTCTCGCTCA
*
37432334 TTTTCAATTATTT-TTTTCTTTTGCTT
1 TTTTC-ATGATTTCTTTTCTTTTGCTT
* *
37432360 TTTTCCTGATTTCTTTTCTTTTTCTT
1 TTTTCATGATTTCTTTTCTTTTGCTT
37432386 T
1 T
37432387 ATCATTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.08, C:0.15, G:0.04, T:0.74
Consensus pattern (26 bp):
TTTTCATGATTTCTTTTCTTTTGCTT
Found at i:37450991 original size:22 final size:21
Alignment explanation
Indices: 37450951--37450996 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
37450941 TGTTGTTTCG
*
37450951 AAATAAGAAAAGAAAATAA-A
1 AAATAAGAAAAAAAAATAATA
37450971 AAATAAGAGAGAAAAAAATAATA
1 AAATAAGA-A-AAAAAAATAATA
37450994 AAA
1 AAA
37450997 ATTAATAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
21 1 0.05
22 9 0.41
23 4 0.18
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (21 bp):
AAATAAGAAAAAAAAATAATA
Found at i:37451926 original size:44 final size:44
Alignment explanation
Indices: 37451878--37452280 Score: 179
Period size: 44 Copynumber: 8.7 Consensus size: 44
37451868 TTTTAATCCG
* *
37451878 CTCCACTGCAACTTCTGGGAGATAGGATTAATAGCTTCAAT-TT
1 CTCCACTGCAACTTCAGGGAGATAAGATTAATAGCTTCAATCTT
* * ** *
37451921 ACTCCACTACAACTTCAGCGAGATAAGATTGGTATCTTCAATCTT
1 -CTCCACTGCAACTTCAGGGAGATAAGATTAATAGCTTCAATCTT
* *
37451966 CTCCACTGCAACTTCAGGGAGATAAGGTTTGATGTGATAAGATTCACTATCTACAGT
1 CTCCACTGCAACTTCAGGGAGATAA-----GAT-TAAT-AGCTTCA--ATCT----T
* *
37452023 CTGCTCTACTACAACTTTAGGGAGATAAGACTTGTTATGATAGACTT-AATC--
1 CT-C-C-ACTGCAACTTCAGGGAGATAAGA----TTA--ATAG-CTTCAATCTT
* * * * * * * * *
37452074 CGACCTACTGCAACATCAGAGG-TATAGGATTCATCGTTTTAATCTG
1 C-TCC-ACTGCAACTTCAG-GGAGATAAGATTAATAGCTTCAATCTT
* * *
37452120 CTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTTC-ATATG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAATAGC-TTCAATCTT
* ** * * *
37452164 CTCCACTACAACTTCAGGGAGATAAGATTGGTATCTTCAACCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTAATAGCTTCAATCTT
* ** * * *
37452208 CTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAATAGCTTCAATCTT
* *
37452252 CTCCACTACAACTTTAGGGAGATAAGATT
1 CTCCACTGCAACTTCAGGGAGATAAGATT
37452281 TGTAGCCTTC
Statistics
Matches: 275, Mismatches: 52, Indels: 64
0.70 0.13 0.16
Matches are distributed among these distances:
43 7 0.03
44 185 0.67
45 6 0.02
46 3 0.01
49 3 0.01
50 20 0.07
51 9 0.03
53 4 0.01
55 2 0.01
57 6 0.02
58 2 0.01
59 5 0.02
60 23 0.08
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTAATAGCTTCAATCTT
Found at i:37452170 original size:242 final size:241
Alignment explanation
Indices: 37451677--37452238 Score: 880
Period size: 242 Copynumber: 2.3 Consensus size: 241
37451667 GGTTTTAGTC
* * * * * *
37451677 TGCTCCACTACAACATCAAGGAGATAAGGTTTGTTATCCTCAGTCTGT-TCCACTAC-ACTTTCA
1 TGCTCCACTACAACTTC-AGGAGATAA-GATTGGTATCTTCAATCT-TCTCCACTGCAAC-TTCA
*
37451740 GGGAGATAAGGTTTGATGTGATAAGATCCACTATCCTCAGTCTTCTCCACTACAACTTTAGGGAG
62 GGGAGATAAGGTTTGATGTGATAAGATCCACTATCCTCAGTCTGCTCCACTACAACTTTAGGGAG
37451805 ATAAGACTTGTTATGATAGACTTAATCCAACCTACTGCAACATCAGAGGTATAGGATTCATCGTT
127 ATAAGACTTGTTATGATAGACTTAATCCAACCTACTGCAACATCAGAGGTATAGGATTCATCGTT
* *
37451870 TTAATCCGCTCCACTGCAACTTCTGGGAGATAGGATTAATAGCTTCAATT
192 TTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATA
*
37451920 TACTCCACTACAACTTCAGCGAGATAAGATTGGTATCTTCAATCTTCTCCACTGCAACTTCAGGG
1 TGCTCCACTACAACTTCAG-GAGATAAGATTGGTATCTTCAATCTTCTCCACTGCAACTTCAGGG
* *
37451985 AGATAAGGTTTGATGTGATAAGATTCACTAT-CTACAGTCTGCTCTACTACAACTTTAGGGAGAT
65 AGATAAGGTTTGATGTGATAAGATCCACTATCCT-CAGTCTGCTCCACTACAACTTTAGGGAGAT
*
37452049 AAGACTTGTTATGATAGACTTAATCCGACCTACTGCAACATCAGAGGTATAGGATTCATCGTTTT
129 AAGACTTGTTATGATAGACTTAATCCAACCTACTGCAACATCAGAGGTATAGGATTCATCGTTTT
*
37452114 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTTC-ATA
194 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGC-TTCAATA
* *
37452162 TGCTCCACTACAACTTCAGGGAGATAAGATTGGTATCTTCAACCTACTCCACTGCAACTTCAGGG
1 TGCTCCACTACAACTTCA-GGAGATAAGATTGGTATCTTCAATCTTCTCCACTGCAACTTCAGGG
37452227 AGATAAGGTTTG
65 AGATAAGGTTTG
37452239 TGGCTTTAAT
Statistics
Matches: 296, Mismatches: 17, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
241 3 0.01
242 265 0.90
243 28 0.09
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (241 bp):
TGCTCCACTACAACTTCAGGAGATAAGATTGGTATCTTCAATCTTCTCCACTGCAACTTCAGGGA
GATAAGGTTTGATGTGATAAGATCCACTATCCTCAGTCTGCTCCACTACAACTTTAGGGAGATAA
GACTTGTTATGATAGACTTAATCCAACCTACTGCAACATCAGAGGTATAGGATTCATCGTTTTAA
TCCGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATA
Found at i:37452225 original size:88 final size:88
Alignment explanation
Indices: 37452120--37452280 Score: 252
Period size: 88 Copynumber: 1.8 Consensus size: 88
37452110 TTTTAATCTG
*
37452120 CTCCACTGCAACTTCAGGGAGAT-AGGATTAATAGCTTTCATATGCTCCACTACAACTTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGG-TTAATAGCTTTAATATGCTCCACTACAACTTCAGGGA
37452184 GATAAGATTGGTATCTTCAACCTA
65 GATAAGATTGGTATCTTCAACCTA
** * * *
37452208 CTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATCTGCTCCACTACAACTTTAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGGTTAATAGCTTTAATATGCTCCACTACAACTTCAGGGAG
37452273 ATAAGATT
66 ATAAGATT
37452281 TGTAGCCTTC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
88 63 0.95
89 3 0.05
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (88 bp):
CTCCACTGCAACTTCAGGGAGATAAGGTTAATAGCTTTAATATGCTCCACTACAACTTCAGGGAG
ATAAGATTGGTATCTTCAACCTA
Found at i:37452283 original size:44 final size:44
Alignment explanation
Indices: 37452111--37452286 Score: 217
Period size: 44 Copynumber: 4.0 Consensus size: 44
37452101 GATTCATCGT
* * **
37452111 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAATAGC
1 TTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGC
* * * *
37452155 TTTCATATGCTCCACTACAACTTCAGGGAGATAAGATTGGTATC
1 TTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGC
* * * * * *
37452199 TTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTGGC
1 TTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGC
*
37452243 TTTAATCTGCTCCACTACAACTTTAGGGAGATAAGATTTGTAGC
1 TTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGC
37452287 CTTCTTCAAT
Statistics
Matches: 108, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 108 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
TTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAGC
Found at i:37452502 original size:102 final size:102
Alignment explanation
Indices: 37452326--37452569 Score: 416
Period size: 102 Copynumber: 2.4 Consensus size: 102
37452316 CTTCAGTCTT
* * * * *
37452326 TAATGTCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTATTCCGCTGTAATGCCAGGGAAA
1 TAATGCCAAGGAAATAGGATTCGCTGCCTTCAGCTTTAATCTATTCCGCTGCAATGCCAGGGAAA
37452391 CAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTG
66 CAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTG
* *
37452428 TAATGCCAAGGAAATAGGATTCGCTGACTTCAGCTTTAATCTATTCCGCTGCAATGTCAGGGAAA
1 TAATGCCAAGGAAATAGGATTCGCTGCCTTCAGCTTTAATCTATTCCGCTGCAATGCCAGGGAAA
37452493 CAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTG
66 CAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTG
*
37452530 TAACGCCAAGGAAATAGGATTCGCTGCCTTCAGCTTTAAT
1 TAATGCCAAGGAAATAGGATTCGCTGCCTTCAGCTTTAAT
37452570 TCGCTCCACT
Statistics
Matches: 133, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 133 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (102 bp):
TAATGCCAAGGAAATAGGATTCGCTGCCTTCAGCTTTAATCTATTCCGCTGCAATGCCAGGGAAA
CAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTG
Found at i:37452573 original size:20 final size:21
Alignment explanation
Indices: 37452548--37452590 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
37452538 AGGAAATAGG
*
37452548 ATTCGCTGC-CTTCAGCTTTA
1 ATTCGCTCCACTTCAGCTTTA
*
37452568 ATTCGCTCCACTTTAGCTTTA
1 ATTCGCTCCACTTCAGCTTTA
37452589 AT
1 AT
37452591 GTATTCCACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.19, C:0.28, G:0.12, T:0.42
Consensus pattern (21 bp):
ATTCGCTCCACTTCAGCTTTA
Found at i:37452579 original size:51 final size:51
Alignment explanation
Indices: 37452326--37452569 Score: 290
Period size: 51 Copynumber: 4.8 Consensus size: 51
37452316 CTTCAGTCTT
* * * *
37452326 TAATGTCAAGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTATTCCGCTG
1 TAATGCCAAGGAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTG
* * * *
37452377 TAATGCCAGGGAAACAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTG
1 TAATGCCAAGGAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTG
* * * * *
37452428 TAATGCCAAGGAAATAGGATTCGCTGACTTCAGCTTTAATCTATTCCGCTG
1 TAATGCCAAGGAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTG
* * * * * *
37452479 CAATGTCAGGGAAACAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTG
1 TAATGCCAAGGAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTG
* * *
37452530 TAACGCCAAGGAAATAGGATTCGCTGCCTTCAGCTTTAAT
1 TAATGCCAAGGAAATAAGATTCGCTGCCTTTAGCTTTAAT
37452570 TCGCTCCACT
Statistics
Matches: 156, Mismatches: 37, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 156 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (51 bp):
TAATGCCAAGGAAATAAGATTCGCTGCCTTTAGCTTTAATCTGTTCCACTG
Found at i:37452661 original size:51 final size:51
Alignment explanation
Indices: 37452579--37452677 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
37452569 TTCGCTCCAC
* *
37452579 TTTAGCTTTAATGTATTCCACTACAATGCCAGGGAAAAAAGATTCATTACA
1 TTTAGCTTTAATCTATTCCACTACAAAGCCAGGGAAAAAAGATTCATTACA
* *
37452630 TTTAGCTTTAATCTATTCCACTGCAAAGCCAGGGAAATAAGATTCATT
1 TTTAGCTTTAATCTATTCCACTACAAAGCCAGGGAAAAAAGATTCATT
37452678 GTCTTCGATC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (51 bp):
TTTAGCTTTAATCTATTCCACTACAAAGCCAGGGAAAAAAGATTCATTACA
Found at i:37452886 original size:132 final size:131
Alignment explanation
Indices: 37452661--37452897 Score: 314
Period size: 132 Copynumber: 1.8 Consensus size: 131
37452651 TGCAAAGCCA
*** * *
37452661 GGGAAATAAGATTCATTGTCTTCGATCTGTTCCACTACTACTTAGGGAGACAGGATCTACAATCT
1 GGGAAATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAATCT
*
37452726 TCAACCTACTCCACTGCAACTCAGGGAGAT-AGGACTGGTGGCTTAAATCTACTTCCCTACTACC
66 TCAACCTACTCCACTGCAACTCAAGGAGATAAGG-CTGGTGGCTTAAATCTACTTCCCTACTACC
37452790 TT
130 TT
* * * * *
37452792 GGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAATATCTATAATT
1 GGGAA-ATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAATC
* * **
37452857 TTCTACCTACTCTACTGCTGCTCAAGGAGATAAGGCTGGTG
65 TTCAACCTACTCCACTGCAACTCAAGGAGATAAGGCTGGTG
37452898 TTTTCGATCT
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
131 5 0.06
132 81 0.91
133 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (131 bp):
GGGAAATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAAGATCTACAATCT
TCAACCTACTCCACTGCAACTCAAGGAGATAAGGCTGGTGGCTTAAATCTACTTCCCTACTACCT
T
Found at i:37452933 original size:88 final size:88
Alignment explanation
Indices: 37452840--37453299 Score: 607
Period size: 88 Copynumber: 5.2 Consensus size: 88
37452830 CTGCTTAGGG
* * * * * *
37452840 AGACAATATCTATAATTTTCTACCTACTCTACTGCTGCTCAAGGAGATAAGGCTGGTGTTTTCGA
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGTTTTCAA
*
37452905 TCTGCTTCACTAACAGTACAGGA
66 TCTGCTTCACTACCAGTACAGGA
* * * * *
37452928 AGACAAGATCTACCATCTTTAACCTACTCCACTGTTGCTCAGGGAGATAAGGCTGGTGTTTTCGA
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGTTTTCAA
* * *
37452993 TCTGTTTCACTGCCAGTATAGGA
66 TCTGCTTCACTACCAGTACAGGA
* * * * * *
37453016 AGACAAGATCTACAATCTTCAACTTATTCCACTGATGTTCAAGGAGATAAGGTTGGTGTTTTCTA
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGTTTTCAA
* *
37453081 TCTACTTCACTGCCAGTACAGGA
66 TCTGCTTCACTACCAGTACAGGA
* * *
37453104 TGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGTTTTTAA
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGTTTTCAA
* * * *
37453169 TCTACTTCACTGCTAGTATAGGA
66 TCTGCTTCACTACCAGTACAGGA
*
37453192 AGACAAGATCTACAATCTTCAACCTACTCCTCTGCTGCTC-AGGAAGATAAGGCTGGTGTTTTCA
1 AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGG-AGATAAGGCTGGTGTTTTCA
* *
37453256 ATTTGCTTTACTACCAGTACAGGA
65 ATCTGCTTCACTACCAGTACAGGA
37453280 AGACAAGATCTACAATCTTC
1 AGACAAGATCTACAATCTTC
37453300 TTCAATCCAT
Statistics
Matches: 325, Mismatches: 46, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
87 2 0.01
88 323 0.99
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (88 bp):
AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGTTTTCAA
TCTGCTTCACTACCAGTACAGGA
Found at i:37454612 original size:6 final size:6
Alignment explanation
Indices: 37454601--37454647 Score: 69
Period size: 6 Copynumber: 8.0 Consensus size: 6
37454591 TTGGCCTCTC
* *
37454601 CTTTTT CTTTTT CTTTTT CTTTTT C-TTTT CTTCTT CTTCTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
37454648 TGAAATATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 5 0.13
6 33 0.87
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
CTTTTT
Found at i:37454629 original size:17 final size:17
Alignment explanation
Indices: 37454601--37454646 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
37454591 TTGGCCTCTC
*
37454601 CTTTTTCTTTTTCTTTTT
1 CTTTTTC-TTTTCTTCTT
37454619 CTTTTTCTTTTCTTCTT
1 CTTTTTCTTTTCTTCTT
*
37454636 CTTCTTCTTTT
1 CTTTTTCTTTT
37454647 TTGAAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 19 0.73
18 7 0.27
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (17 bp):
CTTTTTCTTTTCTTCTT
Found at i:37454630 original size:23 final size:23
Alignment explanation
Indices: 37454603--37454647 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
37454593 GGCCTCTCCT
* *
37454603 TTTTCTTTTTCTTTTTCTTTTTC
1 TTTTCTTCTTCTTCTTCTTTTTC
37454626 TTTTCTTCTTCTTCTTCTTTTT
1 TTTTCTTCTTCTTCTTCTTTTT
37454648 TGAAATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (23 bp):
TTTTCTTCTTCTTCTTCTTTTTC
Found at i:37459967 original size:21 final size:21
Alignment explanation
Indices: 37459931--37459991 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
37459921 AATAACTTTA
37459931 AAAAATGTACGTATATATATTAG-
1 AAAAATGT--GTATATATATT-GT
37459954 AAAAATGTGTATATATATTGT
1 AAAAATGTGTATATATATTGT
* *
37459975 AGAAATGTATATATATA
1 AAAAATGTGTATATATA
37459992 ATGTGTATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 26 0.74
23 8 0.23
ACGTcount: A:0.48, C:0.02, G:0.13, T:0.38
Consensus pattern (21 bp):
AAAAATGTGTATATATATTGT
Found at i:37460784 original size:21 final size:20
Alignment explanation
Indices: 37460746--37460789 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
37460736 TGTTGTTTCG
37460746 AAATAAGAAAATAAAATAAA
1 AAATAAGAAAATAAAATAAA
37460766 AAATAAGAGCAAA-AAAATAAA
1 AAATAAGA--AAATAAAATAAA
37460787 AAA
1 AAA
37460790 ATTAATAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.36
21 11 0.50
22 3 0.14
ACGTcount: A:0.80, C:0.02, G:0.07, T:0.11
Consensus pattern (20 bp):
AAATAAGAAAATAAAATAAA
Found at i:37460796 original size:26 final size:26
Alignment explanation
Indices: 37460753--37460804 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
37460743 TCGAAATAAG
37460753 AAAATAAAATAAAAAATA-AGAGCAAA
1 AAAATAAAATAAAAAATAGA-AGCAAA
*
37460779 AAAATAAAA-AAATTAATAGAAGCAAA
1 AAAATAAAATAAA-AAATAGAAGCAAA
37460805 TCACCTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 3 0.13
26 19 0.83
27 1 0.04
ACGTcount: A:0.75, C:0.04, G:0.08, T:0.13
Consensus pattern (26 bp):
AAAATAAAATAAAAAATAGAAGCAAA
Found at i:37467875 original size:26 final size:26
Alignment explanation
Indices: 37467829--37467881 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
37467819 AAAGGAAAAG
*
37467829 GAAAGAAGGAAAATAAGAAAAAGAAA
1 GAAAGAAGGAAAAGAAGAAAAAGAAA
* *
37467855 GAAAGAACGTAAAAGAA-AAAAATAAA
1 GAAAGAA-GGAAAAGAAGAAAAAGAAA
37467881 G
1 G
37467882 CTCAGGAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.72, C:0.02, G:0.21, T:0.06
Consensus pattern (26 bp):
GAAAGAAGGAAAAGAAGAAAAAGAAA
Done.