Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 123 of 221
Found at i:37868692 original size:9 final size:9
Alignment explanation
Indices: 37868678--37868709 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
37868668 AATTTGTACA
37868678 AATATTTTG
1 AATATTTTG
37868687 AATATTTTG
1 AATATTTTG
37868696 AATATTTTG
1 AATATTTTG
37868705 -ATATT
1 AATATT
37868710 ATTTGAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.56
Consensus pattern (9 bp):
AATATTTTG
Found at i:37872147 original size:123 final size:123
Alignment explanation
Indices: 37871844--37872259 Score: 559
Period size: 125 Copynumber: 3.3 Consensus size: 123
37871834 AACATGCTAT
* * *
37871844 TGTAGCAAAATCACGTCCACGTGGGTGCGATTTCACAAATTCTTCTCATAAAGCATCCTGGTAGA
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT-GTAGA
* *
37871909 AGCAATTTTATACTATTTGCTCAGAAATGTCAACTCGAAATTATTTCTTCCAGGACCAAC
65 AGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGACCAAC
* * *
37871969 TATAGCAAAAGCGCGTCCACGAT-GGCGCGATTTCAGAAATTCTTCTCA-AATAGCATCCTGCTT
1 TGTAGCAAAAGCGCGTCCACG-TGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTG-TA
* * * *
37872032 GAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAA-TAATTTTACAGGACCTAC
63 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAAC
* * *
37872092 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTAACAAATTCTTCTCTTAGAGCATCCTAGTAGA
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT-GTAGA
* *
37872157 AGCGATTTTATACTATTTGCTAAGAAACGTCAACTCAAAATTATTTTTTCCAGGACCAAC
65 AGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTA-TTTTTCCAGGACCAAC
* * * *
37872217 TGTAGCAAAAGCGTGTCCAAGAGGGCACGATTTCACAAATTCT
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCT
37872260 CCGCGTCCAT
Statistics
Matches: 254, Mismatches: 29, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
122 1 0.00
123 101 0.40
124 11 0.04
125 140 0.55
126 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (123 bp):
TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGTAGAA
GCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAAC
Found at i:37881016 original size:29 final size:30
Alignment explanation
Indices: 37880970--37881035 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
37880960 GTGGCCAAGA
** * * *
37880970 GTAAATATTCAAATTTGAGGGGCTAA-AGT
1 GTAAATATAAAAACTTGAAGGGCCAATAGT
*
37880999 GTAAATATAAAAACTTGAAGTGCCAATAGT
1 GTAAATATAAAAACTTGAAGGGCCAATAGT
37881029 GTAAATA
1 GTAAATA
37881036 ATTTAAGGGT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 20 0.67
30 10 0.33
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.29
Consensus pattern (30 bp):
GTAAATATAAAAACTTGAAGGGCCAATAGT
Found at i:37883743 original size:9 final size:9
Alignment explanation
Indices: 37883729--37883758 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
37883719 GGTTTTTTGA
37883729 TTTTAGGGT
1 TTTTAGGGT
*
37883738 TTTTAGGAT
1 TTTTAGGGT
37883747 TTTTAGGGT
1 TTTTAGGGT
37883756 TTT
1 TTT
37883759 GGAGAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (9 bp):
TTTTAGGGT
Found at i:37884997 original size:18 final size:16
Alignment explanation
Indices: 37884974--37885009 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
37884964 TTATTAGTTC
37884974 ATTATTATATGTTATATT
1 ATTATTATAT-TTAT-TT
37884992 ATTATTATATTTATTT
1 ATTATTATATTTATTT
37885008 AT
1 AT
37885010 ATAGGAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 4 0.22
18 10 0.56
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
ATTATTATATTTATTT
Found at i:37886364 original size:127 final size:127
Alignment explanation
Indices: 37886099--37886471 Score: 590
Period size: 127 Copynumber: 3.0 Consensus size: 127
37886089 GGTTTCGACA
* * * * * *
37886099 AGAAGGATTTCTGAAGTCGCGCCCACGCGTACGCGCTTTTGCTACAGTAGGTCCTGGAA-AAATA
1 AGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATA
* * * *
37886163 ATTTCGAGTTGACGTTTCTAAGAAAATAGTAT-AAAAAACGCTTCAAGCAGAATGCTTTATG
66 ATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGCAGGATGCTTTATG
*
37886224 AGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTAGAAGAAATA
1 AGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATA
*
37886289 ATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACACTTCAAGCAGGATGCTATT-TG
66 ATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGCAGGATGCT-TTATG
*
37886351 AGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATA
1 AGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATA
*
37886416 ATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAGAACGCTTCAAGCAGGATGC
66 ATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGCAGGATGC
37886472 AAATAGTTTA
Statistics
Matches: 229, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
125 52 0.23
126 34 0.15
127 141 0.62
128 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (127 bp):
AGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATA
ATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGCAGGATGCTTTATG
Found at i:37886525 original size:21 final size:21
Alignment explanation
Indices: 37886483--37886946 Score: 487
Period size: 21 Copynumber: 21.9 Consensus size: 21
37886473 AATAGTTTAT
37886483 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
*
37886505 GGTTTTTAAGTTAAAGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
37886526 GGTTTTTAAGTTAAGGGTTTTA-
1 GGTTTTTAAGTTAAGGG--TTAG
37886548 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
* * *
37886570 GATTTTAAAGTTAAGAGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
37886591 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
37886612 TGTTTTT-ATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
37886632 GG--TTTAGGTTTTAGGGTTAG
1 GGTTTTTAAG-TTAAGGGTTAG
*
37886652 GGTTTTTAAATTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
* *
37886674 GGTTTTTAAGTTAAGAGTTAA
1 GGTTTTTAAGTTAAGGGTTAG
*
37886695 GATTTTTAAAGTTAAGGGTTAG
1 GGTTTTT-AAGTTAAGGGTTAG
*
37886717 GGTTTTAAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
* * *
37886738 TGTTTTTTATTTAAGGGTT-G
1 GGTTTTTAAGTTAAGGGTTAG
* * *
37886758 GG-GTTTAAGGTTTAGGGTTAT
1 GGTTTTTAA-GTTAAGGGTTAG
*
37886779 GGTTTTTAGGTTAAGGGTTAAAG
1 GGTTTTTAAGTTAAGGGTT--AG
37886802 GG-TTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAAGGG-TTAG
* * *
37886823 GGTTTTAAATTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGGTTAG
* *
37886844 GGTTTTTAAATTAAGGATTAG
1 GGTTTTTAAGTTAAGGGTTAG
* *
37886865 GGTTTTTAAATTAAGAGTTTAG
1 GGTTTTTAAGTTAAG-GGTTAG
*
37886887 AG-TTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGGTTAG
*
37886907 GGTTTTTAAGTTAAGAGTTTAG
1 GGTTTTTAAGTTAAG-GGTTAG
37886929 GG-TTTTAAGTTAAGGGTT
1 GGTTTTTAAGTTAAGGGTT
37886947 TAGGATTTAT
Statistics
Matches: 369, Mismatches: 54, Indels: 40
0.80 0.12 0.09
Matches are distributed among these distances:
18 3 0.01
19 4 0.01
20 44 0.12
21 181 0.49
22 129 0.35
23 8 0.02
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (21 bp):
GGTTTTTAAGTTAAGGGTTAG
Found at i:37886947 original size:127 final size:125
Alignment explanation
Indices: 37886483--37886954 Score: 565
Period size: 127 Copynumber: 3.7 Consensus size: 125
37886473 AATAGTTTAT
* * *
37886483 GGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAAGGTTAGGGTTTTTAAGTTAAGGGTTTTA
1 GGTTTTTAATTTAAGGG-TTAGGG-GTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGG-TTTA
* * *
37886548 GGTTTTTAAGTTAAGGGTTTAGGATTTTAAAGTTAAGAGTTAGGGTTTTTAAGTTAAGGGTTAG
63 GGGTTTTAAGTTAAGGGTTTAGGATTTTAAAGTTAAGGGTTA-GGTTTTTAAATTAAGGGTTAG
* * * *
37886612 TGTTTTT-ATTTAAGGGTTA-GGGTTTAGGTTTTAGGGTTAGGGTTTTTAAATTAAGGGTTTAGG
1 GGTTTTTAATTTAAGGGTTAGGGGTTTAAG-TTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGG
* * *
37886675 GTTTTTAAGTTAAGAG-TTAAGATTTTTAAAGTTAAGGGTTAGGGTTTTAAAGTTAAGGGTTAG
65 G-TTTTAAGTTAAGGGTTTAGGA-TTTTAAAGTTAAGGGTTAGGTTTTTAAA-TTAAGGGTTAG
* * * * * *
37886738 TGTTTTTTATTTAAGGGTT-GGGGTTTAAGGTTTAGGGTTATGGTTTTTAGGTTAAGGGTTAAAG
1 GGTTTTTAATTTAAGGGTTAGGGGTTTAA-GTTAAGGGTTAGGGTTTTTAAGTTAAGGGTT-TAG
* * *
37886802 GGTTTTAAGTTAAGGGTTTAGGGTTTTAAATTTAAGGGTTATGGTTTTTAAATTAAGGATTAG
64 GGTTTTAAGTTAAGGGTTTAGGATTTTAAAGTTAAGGGTTA-GGTTTTTAAATTAAGGGTTAG
* * * * *
37886865 GGTTTTTAAATTAAGAGTTTAGAGTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGAGTTTAGG
1 GGTTTTTAATTTAAG-GGTTAGGGGTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGG
37886930 GTTTTAAGTTAAGGGTTTAGGATTT
65 GTTTTAAGTTAAGGGTTTAGGATTT
37886955 ATCCTGAAAA
Statistics
Matches: 295, Mismatches: 36, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
125 24 0.08
126 75 0.25
127 127 0.43
128 56 0.19
129 13 0.04
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (125 bp):
GGTTTTTAATTTAAGGGTTAGGGGTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGG
TTTTAAGTTAAGGGTTTAGGATTTTAAAGTTAAGGGTTAGGTTTTTAAATTAAGGGTTAG
Found at i:37893300 original size:46 final size:46
Alignment explanation
Indices: 37893233--37893409 Score: 273
Period size: 46 Copynumber: 3.8 Consensus size: 46
37893223 AGTGTGGAAC
37893233 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
*
37893279 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAGAA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
* * * * *
37893325 GTAGGTATGGCATTTTAGTAACGAAAGCCATAGTGAGTTGTGAAAA
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
* * *
37893371 GTAGGTATGGTATTTCAATGAAGAAAACCATATTGAGTT
1 GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTT
37893410 ATAGCATTGT
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 117 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (46 bp):
GTAGGTATGGTATTTCAGTAAAGAAAACCATACTGAGTTGTGAAAA
Found at i:37893691 original size:51 final size:51
Alignment explanation
Indices: 37893631--37893734 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
37893621 ATTGTTAGTG
37893631 AAATCTTGATAAGATTTTATTATGGGCCTATGAACTTACTAAGCTTTCTGT
1 AAATCTTGATAAGATTTTATTATGGGCCTATGAACTTACTAAGCTTTCTGT
37893682 AAATCTTGATAAGATTTTATTATGGGCCTATGAACTTACTAAGCTTTCTGT
1 AAATCTTGATAAGATTTTATTATGGGCCTATGAACTTACTAAGCTTTCTGT
37893733 AA
1 AA
37893735 GCTTACTCCT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.40
Consensus pattern (51 bp):
AAATCTTGATAAGATTTTATTATGGGCCTATGAACTTACTAAGCTTTCTGT
Found at i:37896034 original size:17 final size:16
Alignment explanation
Indices: 37896012--37896043 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
37896002 ATTTTTTTCC
37896012 TTATTCTATTACAACAT
1 TTATTCTATT-CAACAT
37896029 TTATTCTATTCAACA
1 TTATTCTATTCAACA
37896044 AAACAATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTATTCTATTCAACAT
Found at i:37903226 original size:86 final size:87
Alignment explanation
Indices: 37902871--37903640 Score: 1025
Period size: 86 Copynumber: 8.9 Consensus size: 87
37902861 TAAGAAATAA
37902871 TTTGGTTAGGGTTAGGGTTTTTAATT-AAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTTG-G
1 TTTGGTTAGGGTTAGGGTTTTTAATTGAA-TTAGGTTAGGGTTAGGGTTTTTAATTAAA-TTGAG
37902934 TTAGGGTTAGGGTTTTTAATTGAA-
64 TTAGGGTTAGGGTTTTTAATT-AAG
* * * ** * *
37902958 TTGGGTTAGGGTTAAGGTTTTTAATTGAATTGGGTTATTGTTAGGGTTTTTAATTGAATTGGGTT
1 TTTGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTGAGTT
37903023 AGGGTTAGGGTTTTTAATTAA-
66 AGGGTTAGGGTTTTTAATTAAG
* * *
37903044 ATTGCGTTAGGGTTATGGTTTTTAATT-AAGTTATGTTAGGGTTAGGGTTTTTAATTAAATT-AG
1 TTTG-GTTAGGGTTAGGGTTTTTAATTGAA-TTAGGTTAGGGTTAGGGTTTTTAATTAAATTGA-
*
37903107 GTTAGGGTTATGGTTTTTAATTAAG
63 GTTAGGGTTAGGGTTTTTAATTAAG
*
37903132 TTAT-GTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGG-TTTTAATTGAATTGAGT
1 TT-TGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTGAGT
37903195 TAGGGTTAGGGTTTTTAATTAAG
65 TAGGGTTAGGGTTTTTAATTAAG
* *
37903218 TTTGGTTAGGGTTATGGTTTTTAATT-AAGTTAGGTTA-GGTTAGGGTTTTTAATTAAGTT-AGG
1 TTTGGTTAGGGTTAGGGTTTTTAATTGAA-TTAGGTTAGGGTTAGGGTTTTTAATTAAATTGA-G
37903280 TTAGGGTTAGGGTTTTTAATTAAG
64 TTAGGGTTAGGGTTTTTAATTAAG
* *
37903304 TTAGGTTAGGGTTAGGG-TTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAGTT-AGGT
1 TTTGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTGA-GT
*
37903367 TAGGGTTGGGGTTTTTAATTGAA-
65 TAGGGTTAGGGTTTTTAATT-AAG
* * * *
37903390 -TTGGGTAGGGTTAGGGTTTTTAATTAAATTGGGTTAGGGTTAGGG-TTTTAATTGAATTGTGTT
1 TTTGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATT-AAAT-TG--
37903453 AGGGTTAGGGTTAGGGTTTTTAATTAAG
62 A--GTTAGGGTTAGGGTTTTTAATTAAG
* * *
37903481 TTTGGTTAGGGTTAGGGTTTTTAATTAAATTGGGTTAGGGTTAGGG-TTTTAATTAAATTGGGTT
1 TTTGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTGAGTT
37903545 AGGGTTAGGGTTTTTAATTAAG
66 AGGGTTAGGGTTTTTAATTAAG
* * *
37903567 TTAGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGATTTTTAATTAAATTGGGTT
1 TTTGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTGAGTT
37903632 AGGGTTAGG
66 AGGGTTAGG
37903641 AATAAACTTC
Statistics
Matches: 617, Mismatches: 40, Indels: 52
0.87 0.06 0.07
Matches are distributed among these distances:
85 50 0.08
86 270 0.44
87 209 0.34
88 5 0.01
89 1 0.00
90 5 0.01
91 25 0.04
92 52 0.08
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (87 bp):
TTTGGTTAGGGTTAGGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTGAGTT
AGGGTTAGGGTTTTTAATTAAG
Found at i:37903641 original size:29 final size:29
Alignment explanation
Indices: 37902869--37903640 Score: 1047
Period size: 29 Copynumber: 26.6 Consensus size: 29
37902859 TGTAAGAAAT
*
37902869 AATTTGGTTAGGGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37902898 AGTTAGGTTAGGGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
* *
37902927 AATTTGGTTAGGGTTAGGGTTTTTAATTG
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
* * *
37902956 AATTGGGTTAGGGTTAAGGTTTTTAATTG
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
* ** *
37902985 AATTGGGTTATTGTTAGGGTTTTTAATTG
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903014 AATTGGGTTAGGGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903043 AATT-GCGTTAGGGTTATGGTTTTTAATTA
1 AATTAG-GTTAGGGTTAGGGTTTTTAATTA
* *
37903072 AGTTATGTTAGGGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903101 AATTAGGTTAGGGTTATGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
* * *
37903130 AGTTATGTTAGGGTTAGGGTTTTTAATTG
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903159 AATTAGGTTAGGGTTAGGG-TTTTAATTG
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
37903187 AATT-GAGTTAGGGTTAGGGTTTTTAATTA
1 AATTAG-GTTAGGGTTAGGGTTTTTAATTA
* * *
37903216 AGTTTGGTTAGGGTTATGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903245 AGTTAGGTTA-GGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903273 AGTTAGGTTAGGGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
* *
37903302 AGTTAGGTTAGGGTTAGGG-TTTTAATTG
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
37903330 AATTAGGTTAGGGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
* * *
37903359 AGTTAGGTTAGGGTTGGGGTTTTTAATTG
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903388 AATT-GGGTAGGGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903416 AATTGGGTTAGGGTTAGGG-TTTTAATTGA
1 AATTAGGTTAGGGTTAGGGTTTTTAATT-A
*
37903445 ATTGTGTTAGGGTTAGGGTTAGGGTTTTTAATTA
1 A----ATTA-GGTTAGGGTTAGGGTTTTTAATTA
* *
37903479 AGTTTGGTTAGGGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903508 AATTGGGTTAGGGTTAGGG-TTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903536 AATTGGGTTAGGGTTAGGGTTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
* *
37903565 AGTTAGGTTAGGGTTAGGGTTTTTAATTG
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903594 AATTAGGTTAGGGTTAGGATTTTTAATTA
1 AATTAGGTTAGGGTTAGGGTTTTTAATTA
*
37903623 AATTGGGTTAGGGTTAGG
1 AATTAGGTTAGGGTTAGG
37903641 AATAAACTTC
Statistics
Matches: 673, Mismatches: 54, Indels: 32
0.89 0.07 0.04
Matches are distributed among these distances:
27 1 0.00
28 141 0.21
29 501 0.74
30 4 0.01
33 2 0.00
34 16 0.02
35 8 0.01
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.46
Consensus pattern (29 bp):
AATTAGGTTAGGGTTAGGGTTTTTAATTA
Found at i:37903695 original size:43 final size:43
Alignment explanation
Indices: 37903648--37903732 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
37903638 AGGAATAAAC
*
37903648 TTCTATTTTATTACAT-CAAATAATATCAAAATAACTCAAAATT
1 TTCTATTTTATTACATAAAAATAATATCAAAAT-ACTCAAAATT
* *
37903691 TTCTATTTTTTTACATAAAAATAATATCAAAATATTCAAAAT
1 TTCTATTTTATTACATAAAAATAATATCAAAATACTCAAAAT
37903733 ATTTGTACAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 23 0.61
44 15 0.39
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (43 bp):
TTCTATTTTATTACATAAAAATAATATCAAAATACTCAAAATT
Found at i:37904128 original size:18 final size:18
Alignment explanation
Indices: 37904102--37904142 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
37904092 GGACTCGAAA
37904102 AAGGATACATATAAGGGT
1 AAGGATACATATAAGGGT
*
37904120 AAGGGTACATATAAGGGT
1 AAGGATACATATAAGGGT
*
37904138 TAGGA
1 AAGGA
37904143 AACGCACCTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.32, T:0.22
Consensus pattern (18 bp):
AAGGATACATATAAGGGT
Found at i:37904808 original size:7 final size:7
Alignment explanation
Indices: 37904796--37904828 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
37904786 TATACATAAT
37904796 AATACTA
1 AATACTA
37904803 AATACTA
1 AATACTA
37904810 AATACTA
1 AATACTA
37904817 AATACTA
1 AATACTA
37904824 AATAC
1 AATAC
37904829 CAATCGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:37906022 original size:51 final size:51
Alignment explanation
Indices: 37905967--37906082 Score: 223
Period size: 51 Copynumber: 2.3 Consensus size: 51
37905957 TATTTTAAAA
37905967 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTGG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTGG
*
37906018 AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTGG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTGG
37906069 AAGGAAATTGAGAG
1 AAGGAAATTGAGAG
37906083 AATTTTGGAA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.44, C:0.01, G:0.28, T:0.27
Consensus pattern (51 bp):
AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTGG
Found at i:37906025 original size:29 final size:29
Alignment explanation
Indices: 37905993--37906076 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 29
37905983 AATTGAAATC
37905993 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
* * **
37906022 AAAT-T-GA---GAG-GAA-ATTGAAATT
1 AAATATGGATTTGAGAGAATTTTGGAAGG
37906044 AAATATGGATTTGAGAGAATTTTGGAAGG
1 AAATATGGATTTGAGAGAATTTTGGAAGG
37906073 AAAT
1 AAAT
37906077 TGAGAGAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
22 9 0.22
23 4 0.10
24 5 0.12
27 5 0.12
28 4 0.10
29 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (29 bp):
AAATATGGATTTGAGAGAATTTTGGAAGG
Found at i:37906031 original size:22 final size:22
Alignment explanation
Indices: 37906003--37906104 Score: 80
Period size: 22 Copynumber: 4.3 Consensus size: 22
37905993 AAATATGGAT
37906003 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
* * **
37906025 TTGAGAGGAA-ATTGAAATTAAA
1 TTGAGA-GAATTTTGGAAGGAAA
37906047 TATGGATTTGAGAGAATTTTGGAAGGAAA
1 T-T-GA---GAG--AATTTTGGAAGGAAA
*
37906076 TTGAGAGAATTTTGGAAAGAAA
1 TTGAGAGAATTTTGGAAGGAAA
37906098 TTGAGAG
1 TTGAGAG
37906105 GAAATATGAG
Statistics
Matches: 62, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
22 36 0.58
23 4 0.06
24 5 0.08
26 1 0.02
27 4 0.06
28 3 0.05
29 9 0.15
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.28
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:37917015 original size:20 final size:20
Alignment explanation
Indices: 37916986--37917025 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37916976 CAAAACCCCA
37916986 AAAATCCACACACCCATGTG
1 AAAATCCACACACCCATGTG
* *
37917006 AAAATGCACACACCCGTGTG
1 AAAATCCACACACCCATGTG
37917026 CAAACCAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.33, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAATCCACACACCCATGTG
Found at i:37922190 original size:13 final size:13
Alignment explanation
Indices: 37922172--37922206 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
37922162 AGGGTCACAC
*
37922172 AGCCGTGTCGTCA
1 AGCCGTGTAGTCA
37922185 AGCCGTGTAGTCA
1 AGCCGTGTAGTCA
37922198 AGCCGTGTA
1 AGCCGTGTA
37922207 ACTCTCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (13 bp):
AGCCGTGTAGTCA
Found at i:37922420 original size:10 final size:10
Alignment explanation
Indices: 37922407--37922439 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
37922397 CAAACCTATT
37922407 CAAAATATGC
1 CAAAATATGC
37922417 CAAAATATGC
1 CAAAATATGC
*
37922427 CAAAATATAC
1 CAAAATATGC
37922437 CAA
1 CAA
37922440 TTCACAATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.55, C:0.21, G:0.06, T:0.18
Consensus pattern (10 bp):
CAAAATATGC
Found at i:37928856 original size:2 final size:2
Alignment explanation
Indices: 37928849--37928900 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
37928839 TGCTATAAAC
37928849 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
37928891 AG AG AC AG AG
1 AG AG AG AG AG
37928901 TTTGGTGGAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.02, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:37930289 original size:6 final size:6
Alignment explanation
Indices: 37930278--37930307 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
37930268 AGCCATAGAA
*
37930278 GTCATG GTCATG GTCATG GACATG GTCATG
1 GTCATG GTCATG GTCATG GTCATG GTCATG
37930308 TAGGACCAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (6 bp):
GTCATG
Found at i:37946596 original size:3 final size:3
Alignment explanation
Indices: 37946588--37946649 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
37946578 AAAGATAAAT
37946588 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
37946636 AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AA
37946650 TAATAATAAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:37948339 original size:44 final size:44
Alignment explanation
Indices: 37948262--37948574 Score: 281
Period size: 44 Copynumber: 7.0 Consensus size: 44
37948252 AACTTCAAGG
* * * * * * *
37948262 GTAGTTTCAATCTTCTCCGCTGCAACTTTAGGGAGTTGAGATTC
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
* * * *
37948306 GTAGCTTCAATCTGCTCTACTGCTACTTCAGGGAGACAAGGTTT
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
* * *
37948350 GTAGCTTCAATCTACTCCACTACAACTTCAGGGAGATGAGACTCGCTAT
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T---T-T
* * * * * * * *
37948399 GGTAGATTTAATCTAAC-CTACTGCATCTTTAGAGG-TATAGGATTT
1 -GTAGCTTCAATCT-GCTCCACTGCAACTTCAG-GGAGATAAGATTT
*
37948444 G-ACGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTT
1 GTA-GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
* *
37948488 GTAGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTT
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
* *
37948532 GTAGCTTCAATCTGCTCCACTGTAACTTTAGGGAGATAAGATT
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
37948575 CGCTATGGTA
Statistics
Matches: 214, Mismatches: 43, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
43 4 0.02
44 173 0.81
45 3 0.01
46 1 0.00
48 1 0.00
49 2 0.01
50 26 0.12
51 4 0.02
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (44 bp):
GTAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
Found at i:37948456 original size:94 final size:94
Alignment explanation
Indices: 37948347--37948721 Score: 412
Period size: 94 Copynumber: 4.1 Consensus size: 94
37948337 GGAGACAAGG
* * * * *
37948347 TTTGTAGCTTCAATCTACTCCACTACAACTTCAGGGAGATGAGACTCGCTATGGTAGATTTAATC
1 TTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGCTATGGTAGATTTAATC
* * * *
37948412 TAACCTACTGCATCTTTAGAGGTATAGGA
66 TAACCCACTGCAACTTCAGGGGTATAGGA
*
37948441 TTTG-ACGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGA-T---T-T-GTAGCTTTAAT
1 TTTGTA-GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGCTATGGTAGATTTAAT
* * *
37948499 CT-GCTCCACTACAACTTCAGGGAG-ATAAGA
65 CTAAC-CCACTGCAACTTCAGGG-GTATAGGA
* * *
37948529 TTTGTAGCTTCAATCTGCTCCACTGTAACTTTAGGGAGATAAGATTCGCTATGGTAGATTTAAT-
1 TTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGCTATGGTAGATTTAATC
* * * *
37948593 TCATCCCACTGCGACTTTAGGGGTGTAGGA
66 T-AACCCACTGCAACTTCAGGGGTATAGGA
* * * *
37948623 TCTGTAGCTTAAATTTTCTCCACTGCAACTTCAAGGAGATAAGATTCGCTATGGT-GATTTCAAT
1 TTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGCTATGGTAGATTT-AAT
37948687 CTAACCCACTGCAACTTCAGGGGTATAGGA
65 CTAACCCACTGCAACTTCAGGGGTATAGGA
37948717 TTTGT
1 TTTGT
37948722 GGTTAGTTAC
Statistics
Matches: 232, Mismatches: 34, Indels: 30
0.78 0.11 0.10
Matches are distributed among these distances:
87 1 0.00
88 68 0.29
89 4 0.02
90 1 0.00
92 1 0.00
93 10 0.04
94 145 0.62
95 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (94 bp):
TTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGCTATGGTAGATTTAATC
TAACCCACTGCAACTTCAGGGGTATAGGA
Found at i:37948580 original size:182 final size:182
Alignment explanation
Indices: 37948262--37948670 Score: 527
Period size: 182 Copynumber: 2.2 Consensus size: 182
37948252 AACTTCAAGG
* * * * * * *
37948262 GTAGTTTCAATCTTCTCCGCTGCAACTTTAGGGAGTTGAGATTCGTAGCTTCAATCTGCTCTACT
1 GTAGCTTCAATCTTCTCCACTGCAACTTCAAGGAGATAAGATTCGTAGCTTCAATCTGCTCCACT
* * * *
37948327 GCTACTTCAGGGAGACAAGGTTTGTAGCTTCAATCTACTCCACTACAACTTCAGGGAGATGAGAC
66 ACAACTTCAGGGAGACAAGATTTGTAGCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGAC
* *
37948392 TCGCTATGGTAGATTTAA-TCTAACCTACTGC-ATCTTTAGAGGTATAGGATTT
131 TCGCTATGGTAGATTTAATTC-AACCCACTGCGA-CTTTAGAGGTATAGGATCT
* * *
37948444 G-ACGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTGCTCCAC
1 GTA-GCTTCAATCTTCTCCACTGCAACTTCAAGGAGATAAGATTCGTAGCTTCAATCTGCTCCAC
* * ** *
37948508 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGTAACTTTAGGGAGATAAGA
65 TACAACTTCAGGGAGACAAGATTTGTAGCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGA
* * * *
37948573 TTCGCTATGGTAGATTTAATTCATCCCACTGCGACTTTAGGGGTGTAGGATCT
130 CTCGCTATGGTAGATTTAATTCAACCCACTGCGACTTTAGAGGTATAGGATCT
* *
37948626 GTAGCTTAAATTTTCTCCACTGCAACTTCAAGGAGATAAGATTCG
1 GTAGCTTCAATCTTCTCCACTGCAACTTCAAGGAGATAAGATTCG
37948671 CTATGGTGAT
Statistics
Matches: 194, Mismatches: 29, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
181 1 0.01
182 189 0.97
183 4 0.02
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (182 bp):
GTAGCTTCAATCTTCTCCACTGCAACTTCAAGGAGATAAGATTCGTAGCTTCAATCTGCTCCACT
ACAACTTCAGGGAGACAAGATTTGTAGCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGAC
TCGCTATGGTAGATTTAATTCAACCCACTGCGACTTTAGAGGTATAGGATCT
Found at i:37961383 original size:61 final size:61
Alignment explanation
Indices: 37961318--37961432 Score: 169
Period size: 61 Copynumber: 1.9 Consensus size: 61
37961308 ATTACTAAGG
* * *
37961318 ACTAAAATGTAACACGTG-AAAAAGAACAGGGGCCGAATAGGAATATATTCCCAAATAAATT
1 ACTAAAATATAACACGCGAAAAAAGAACAGGGG-CGAATAGGAAAATATTCCCAAATAAATT
* *
37961379 ACTAAAATATAACGCGCGAAAAAAGAACAGGGGCGAATGGGAAAATATTCCCAA
1 ACTAAAATATAACACGCGAAAAAAGAACAGGGGCGAATAGGAAAATATTCCCAA
37961433 CCCTAGGACA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
61 34 0.71
62 14 0.29
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.17
Consensus pattern (61 bp):
ACTAAAATATAACACGCGAAAAAAGAACAGGGGCGAATAGGAAAATATTCCCAAATAAATT
Found at i:37962611 original size:15 final size:14
Alignment explanation
Indices: 37962586--37962631 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
37962576 GGACTTGAAT
37962586 TTTTTATTTTTTGG
1 TTTTTATTTTTTGG
* *
37962600 TTTTTATGTTTTGT
1 TTTTTATTTTTTGG
37962614 TTATTTA-TTTTTGG
1 TT-TTTATTTTTTGG
37962628 TTTT
1 TTTT
37962632 AGGCCGGATG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 2 0.07
14 21 0.78
15 4 0.15
ACGTcount: A:0.09, C:0.00, G:0.13, T:0.78
Consensus pattern (14 bp):
TTTTTATTTTTTGG
Found at i:37962728 original size:41 final size:41
Alignment explanation
Indices: 37962671--37962791 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
37962661 GGTCCGGTTG
37962671 GTGGACCCGAGTAATAAGATACTAAGACAGAGTTCAACAAT
1 GTGGACCCGAGTAATAAGATACTAAGACAGAGTTCAACAAT
**
37962712 GTGGACCCGAGTAATAAGATACTAAGATGGAGTTCAACAAT
1 GTGGACCCGAGTAATAAGATACTAAGACAGAGTTCAACAAT
* **
37962753 GTGGACCTGAGTAATAAGATGTTAAGACA-A-TTCAACAAT
1 GTGGACCCGAGTAATAAGATACTAAGACAGAGTTCAACAAT
37962792 CAACATATAC
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 9 0.12
40 1 0.01
41 63 0.86
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.22
Consensus pattern (41 bp):
GTGGACCCGAGTAATAAGATACTAAGACAGAGTTCAACAAT
Found at i:37965037 original size:3 final size:3
Alignment explanation
Indices: 37965029--37965067 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
37965019 TTCAGTTCAT
37965029 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37965068 ACACTTATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:37970431 original size:28 final size:28
Alignment explanation
Indices: 37970374--37970553 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
37970364 TAAATTGTGC
*
37970374 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
37970401 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
37970429 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
37970457 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
37970484 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
37970512 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
37970539 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37970554 GACTTAATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:37970438 original size:55 final size:55
Alignment explanation
Indices: 37970374--37970553 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
37970364 TAAATTGTGC
*
37970374 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
37970429 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
37970484 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
37970539 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37970554 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:37970513 original size:83 final size:82
Alignment explanation
Indices: 37970374--37970553 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
37970364 TAAATTGTGC
37970374 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
37970439 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
37970457 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
37970522 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
37970539 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37970554 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 22 0.24
83 70 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:37977813 original size:28 final size:28
Alignment explanation
Indices: 37977756--37977935 Score: 294
Period size: 28 Copynumber: 6.5 Consensus size: 28
37977746 TAAATTGTGC
*
37977756 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
37977783 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
37977811 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
37977839 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
37977866 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
37977894 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
37977921 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37977936 GACTTAATAT
Statistics
Matches: 147, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 81 0.55
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:37977820 original size:55 final size:55
Alignment explanation
Indices: 37977756--37977935 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
37977746 TAAATTGTGC
*
37977756 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
37977811 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* * *
37977866 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
37977921 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37977936 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:37977895 original size:83 final size:82
Alignment explanation
Indices: 37977756--37977935 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
37977746 TAAATTGTGC
37977756 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
37977821 GTGCGAGTTTGACTATGT
66 GTGCGAG-TTGACTATAT
* *
37977839 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
*
37977904 GTGCGAGTTGATTATAT
66 GTGCGAGTTGACTATAT
*
37977921 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37977936 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 22 0.24
83 70 0.76
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATAT
Found at i:37979647 original size:94 final size:94
Alignment explanation
Indices: 37979481--37979683 Score: 255
Period size: 94 Copynumber: 2.2 Consensus size: 94
37979471 TACAATCATA
* * * **
37979481 AACAATCTTCTATGAGTTAACTAATTTACTATCGCTACTTCAAACAGTTCGTTGATTTACAATCA
1 AACAATTTTCTATGAGTTAACTAATTTACTATCACTACTCCAAACAACTCGTTGATTTACAATCA
* *
37979546 CAACCTAAGTTCATTGATTTATGACCATG
66 CAACCTAAATTCATTAATTTATGACCATG
* * **
37979575 AACAATTTTCTATGAGTTAGCTGATTTACTATCACTACTCCAAACAACTCGTTGATTTATGATCA
1 AACAATTTTCTATGAGTTAACTAATTTACTATCACTACTCCAAACAACTCGTTGATTTACAATCA
* * *
37979640 CAGCCTAAATTCATTAATTTGTGATCATG
66 CAACCTAAATTCATTAATTTATGACCATG
*
37979669 AATAATCTTTC-ATGA
1 AACAAT-TTTCTATGA
37979684 TTTTATTTGT
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
94 89 0.96
95 4 0.04
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (94 bp):
AACAATTTTCTATGAGTTAACTAATTTACTATCACTACTCCAAACAACTCGTTGATTTACAATCA
CAACCTAAATTCATTAATTTATGACCATG
Found at i:37984455 original size:6 final size:6
Alignment explanation
Indices: 37984441--37984478 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
37984431 ACATTTTAGC
*
37984441 TTAGTT TTAGGT TTAGGT TTAGGT TTAGGT TTAGGT TT
1 TTAGGT TTAGGT TTAGGT TTAGGT TTAGGT TTAGGT TT
37984479 CTCTAGGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.00, G:0.29, T:0.55
Consensus pattern (6 bp):
TTAGGT
Found at i:37991967 original size:25 final size:23
Alignment explanation
Indices: 37991931--37991977 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 23
37991921 AGAAAAAAAA
37991931 AGAAAAAAATTTGTTTAATAGGG
1 AGAAAAAAATTTGTTTAATAGGG
37991954 AGAAAAAAGTATTTGTTTAATAGG
1 AGAAAAAA--ATTTGTTTAATAGG
37991978 TGTAACTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.36
25 14 0.64
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (23 bp):
AGAAAAAAATTTGTTTAATAGGG
Found at i:37994959 original size:20 final size:18
Alignment explanation
Indices: 37994912--37994960 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
37994902 CAAGATAAAC
37994912 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
37994929 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
37994949 ATTAAATTAATA
1 ATTAAATTAATA
37994961 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:37997452 original size:23 final size:23
Alignment explanation
Indices: 37997422--37997492 Score: 92
Period size: 23 Copynumber: 3.1 Consensus size: 23
37997412 TATTGATCAA
37997422 TGGTAGCTTCAGCTACATTTCAG
1 TGGTAGCTTCAGCTACATTTCAG
37997445 TGGTAGC-T-ATGTCTACATTTCAG
1 TGGTAGCTTCA-G-CTACATTTCAG
* *
37997468 TGGTAGCTTCGGCTACATATCAG
1 TGGTAGCTTCAGCTACATTTCAG
37997491 TG
1 TG
37997493 TGGCACTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
21 1 0.02
22 2 0.05
23 37 0.88
24 2 0.05
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (23 bp):
TGGTAGCTTCAGCTACATTTCAG
Found at i:37998690 original size:46 final size:47
Alignment explanation
Indices: 37998638--37998752 Score: 119
Period size: 49 Copynumber: 2.4 Consensus size: 47
37998628 GACAAAAAAT
*
37998638 ACCATAGATGAACTATGGCA-ATA-AGTGATATGTAATT-CTGTGTAAG
1 ACCATAGATGGACTATGGCACATATA-TGATATGTAATTAC-GTGTAAG
* * * *
37998684 ACCATAGCTGGGCTATGGCATCGGTATATGTTATGTAATTACGTGTAAG
1 ACCATAGATGGACTATGGCA-C-ATATATGATATGTAATTACGTGTAAG
*
37998733 ACCATAGTTGGACTATGGCA
1 ACCATAGATGGACTATGGCA
37998753 TTGAGAAAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
46 17 0.30
49 38 0.67
50 2 0.04
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.30
Consensus pattern (47 bp):
ACCATAGATGGACTATGGCACATATATGATATGTAATTACGTGTAAG
Found at i:37999833 original size:23 final size:23
Alignment explanation
Indices: 37999785--37999850 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
37999775 ACATTATAGG
* * * *
37999785 ATGCGTCACAAAGGTTTTACAGA
1 ATGCGCCACAAAGGCTTAACAAA
37999808 ATGCGCCACAAAGGCTTAACAAA
1 ATGCGCCACAAAGGCTTAACAAA
* *
37999831 ATG-ACTACAAAGGCTTAACA
1 ATGCGCCACAAAGGCTTAACA
37999851 GAACATTACA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
22 15 0.41
23 22 0.59
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (23 bp):
ATGCGCCACAAAGGCTTAACAAA
Found at i:38004086 original size:14 final size:14
Alignment explanation
Indices: 38004067--38004094 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38004057 CGAATCTCTC
38004067 ACAGTTGATGAGGT
1 ACAGTTGATGAGGT
38004081 ACAGTTGATGAGGT
1 ACAGTTGATGAGGT
38004095 CTATGATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.36, T:0.29
Consensus pattern (14 bp):
ACAGTTGATGAGGT
Found at i:38009041 original size:25 final size:25
Alignment explanation
Indices: 38008989--38009041 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
38008979 TTAGATTTTC
* *
38008989 TTTTCTTTTCGTTTTTAGATTGGGT
1 TTTTCTTTTCGTTTTTAGATTAGAT
38009014 TTTTCCTTTTC-TTTTTAGATTAGAT
1 TTTT-CTTTTCGTTTTTAGATTAGAT
38009039 TTT
1 TTT
38009042 AATTTTGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.11, C:0.09, G:0.13, T:0.66
Consensus pattern (25 bp):
TTTTCTTTTCGTTTTTAGATTAGAT
Found at i:38014765 original size:88 final size:85
Alignment explanation
Indices: 38014673--38014868 Score: 209
Period size: 89 Copynumber: 2.3 Consensus size: 85
38014663 AAATAATAAA
* * * * * *
38014673 AATTAAGCTCCTCTTTTTTATT-TATTTATTTGGGTATTTAAACTTTCAAAATGCATAAAAAAGG
1 AATTAAGC-CCTCTTTTTTATTACACTCACTTGGGTACTTAAACTTTCAAAATGCATAAAAAAGA
**
38014737 CCCTCAAATCTTTTAAAAAAAGTC
65 CCCTCAAA-C--TTAAAAAAAAAC
* *
38014761 AATTAAGCCCCTACTTTTTT-TTACACTCACTTGGGTACTTGAACTTTCAAAATGCATCAAAAAG
1 AATTAAG-CCCT-CTTTTTTATTACACTCACTTGGGTACTTAAACTTTCAAAATGCATAAAAAAG
*
38014825 ACCTTCAAACTTAAAAAAAAAC
64 ACCCTCAAACTTAAAAAAAAAC
38014847 AATTAAGCCC-CTTCTTTTATTA
1 AATTAAGCCCTCTT-TTTTATTA
38014869 AAAATTTTAA
Statistics
Matches: 92, Mismatches: 11, Indels: 13
0.79 0.09 0.11
Matches are distributed among these distances:
83 3 0.03
84 4 0.04
85 6 0.07
86 17 0.18
88 13 0.14
89 49 0.53
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.36
Consensus pattern (85 bp):
AATTAAGCCCTCTTTTTTATTACACTCACTTGGGTACTTAAACTTTCAAAATGCATAAAAAAGAC
CCTCAAACTTAAAAAAAAAC
Found at i:38014806 original size:89 final size:86
Alignment explanation
Indices: 38014702--38014864 Score: 227
Period size: 89 Copynumber: 1.9 Consensus size: 86
38014692 ATTTATTTAT
* * **
38014702 TTGGGTATTTAAACTTTCAAAATGCATAAAAAAGGCCCTCAAATCTTTTAAAAAAAGTCAATTAA
1 TTGGGTACTTAAACTTTCAAAATGCATAAAAAAGACCCTCAAA-C--TTAAAAAAAAACAATTAA
38014767 GCCCCTACTTTTTTTTACACTCAC
63 GCCCCTACTTTTTTTTACACTCAC
* * *
38014791 TTGGGTACTTGAACTTTCAAAATGCATCAAAAAGACCTTCAAACTTAAAAAAAAACAATTAAGCC
1 TTGGGTACTTAAACTTTCAAAATGCATAAAAAAGACCCTCAAACTTAAAAAAAAACAATTAAGCC
*
38014856 CCTTCTTTT
66 CCTACTTTT
38014865 ATTAAAAATT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
86 27 0.41
88 1 0.02
89 38 0.58
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (86 bp):
TTGGGTACTTAAACTTTCAAAATGCATAAAAAAGACCCTCAAACTTAAAAAAAAACAATTAAGCC
CCTACTTTTTTTTACACTCAC
Found at i:38014971 original size:18 final size:19
Alignment explanation
Indices: 38014938--38014981 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
38014928 TTAAAAAATT
*
38014938 TATAAAAATTCG-AAAAGA
1 TATAAAAATTCGAAAAAAA
38014956 TATAAAAA-TCGTAAAAAAA
1 TATAAAAATTCG-AAAAAAA
38014975 TATAAAA
1 TATAAAA
38014982 TTTTATAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 8 0.35
19 12 0.52
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.23
Consensus pattern (19 bp):
TATAAAAATTCGAAAAAAA
Found at i:38015219 original size:20 final size:20
Alignment explanation
Indices: 38015196--38015290 Score: 54
Period size: 20 Copynumber: 4.8 Consensus size: 20
38015186 TTTTTTTATG
38015196 ATTTTTATAAAATTTTACAA
1 ATTTTTATAAAATTTTACAA
* **
38015216 ATTTTT-TTATTTTTTA-AA
1 ATTTTTATAAAATTTTACAA
* *
38015234 GATTTTTATAAAAAATTT-CTA
1 -ATTTTTAT-AAAATTTTACAA
* **
38015255 ATTTCTAGT-AAATTTTTTAA
1 ATTTTTA-TAAAATTTTACAA
38015275 ATTTTTAATAAAATTT
1 ATTTTT-ATAAAATTT
38015291 ATGATTTTTT
Statistics
Matches: 54, Mismatches: 13, Indels: 15
0.66 0.16 0.18
Matches are distributed among these distances:
18 2 0.04
19 19 0.35
20 20 0.37
21 13 0.24
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (20 bp):
ATTTTTATAAAATTTTACAA
Found at i:38015258 original size:39 final size:38
Alignment explanation
Indices: 38015187--38015309 Score: 99
Period size: 39 Copynumber: 3.2 Consensus size: 38
38015177 GTCATTTATT
* * *
38015187 TTTTTTATGATTTTTAT-AAAATTTTACAAATTTTTTTA
1 TTTTTTAAGATTTTTATAAAAAATTT-CTAATTTTTTTA
**
38015225 TTTTTTAAAGATTTTTATAAAAAATTTCTAATTTCTAGTAAA
1 TTTTTT-AAGATTTTTATAAAAAATTTCTAATTT-T--TTTA
* * *
38015267 TTTTTTAA-ATTTTTA-ATAAAATTTATGATTTTTTTA
1 TTTTTTAAGATTTTTATAAAAAATTTCTAATTTTTTTA
38015303 TTATTTT
1 TT-TTTT
38015310 TTTCTAATTT
Statistics
Matches: 69, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
36 4 0.06
37 4 0.06
38 7 0.10
39 29 0.42
40 15 0.22
41 2 0.03
42 8 0.12
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (38 bp):
TTTTTTAAGATTTTTATAAAAAATTTCTAATTTTTTTA
Found at i:38015550 original size:87 final size:87
Alignment explanation
Indices: 38015363--38015551 Score: 202
Period size: 87 Copynumber: 2.2 Consensus size: 87
38015353 TAAATTTATT
** * * *
38015363 TTTGAGGGTCTTTTTGATGTATTTTAAAACTTCAAGTACTCAATTGAGTGAAAAAAAGCAGGGGC
1 TTTGAGGAACTTTTTAATGTATTTTAAAACTTCAAGTACTCAATTGAGTGAAAAAAAACAGGGAC
* * **
38015428 TTAATTATTTTGTTTGAAGTAG
66 TTAATTACTTTGTTTAAAAAAG
** * * * *
38015450 TTTGAGGGCCTTTTTAATGTATTTTGAAAGTTCAAGTGCTCAATTGAGTGTAAAAAAAATAGGGA
1 TTTGAGGAACTTTTTAATGTATTTTAAAACTTCAAGTACTCAATTGAGTG-AAAAAAAACAGGGA
*
38015515 CTTAATTGCTTT-TTTAAAAAATG
65 CTTAATTACTTTGTTTAAAAAA-G
38015538 TTTGA-GAACTTTTT
1 TTTGAGGAACTTTTT
38015552 TACACCCTTA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
87 58 0.68
88 27 0.32
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (87 bp):
TTTGAGGAACTTTTTAATGTATTTTAAAACTTCAAGTACTCAATTGAGTGAAAAAAAACAGGGAC
TTAATTACTTTGTTTAAAAAAG
Found at i:38015790 original size:31 final size:31
Alignment explanation
Indices: 38015752--38015812 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
38015742 TCAAATGAAT
*
38015752 ATTATTAAAATAAGAGATTATGGCTAGATTC
1 ATTATTAAAATAAGAGATTATAGCTAGATTC
38015783 ATTATTAAAATAAGAGATTATAGCTAGATT
1 ATTATTAAAATAAGAGATTATAGCTAGATT
38015813 TATTTTGTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.36
Consensus pattern (31 bp):
ATTATTAAAATAAGAGATTATAGCTAGATTC
Found at i:38019848 original size:15 final size:15
Alignment explanation
Indices: 38019828--38019874 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
38019818 TTCATTTTTA
38019828 AAAAAATGAAAAAAT
1 AAAAAATGAAAAAAT
*
38019843 AAAAAAT-AAAAAAA
1 AAAAAATGAAAAAAT
38019857 AACAAAATCTGAAAAAAT
1 AA-AAAA--TGAAAAAAT
38019875 TTAGTACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 8 0.31
15 11 0.42
17 1 0.04
18 6 0.23
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.13
Consensus pattern (15 bp):
AAAAAATGAAAAAAT
Found at i:38020262 original size:30 final size:30
Alignment explanation
Indices: 38020226--38020311 Score: 138
Period size: 30 Copynumber: 2.9 Consensus size: 30
38020216 CACTGCCTGT
*
38020226 CCACACGGCCGTGTGGCGTACATGGCCAAG
1 CCACACGGCCATGTGGCGTACATGGCCAAG
*
38020256 CCACACGGCCATGTGGCGTACATGGCCAGG
1 CCACACGGCCATGTGGCGTACATGGCCAAG
38020286 CCACACGGCCATGTGGC-TCACATGGC
1 CCACACGGCCATGTGGCGT-ACATGGC
38020312 ATGGCACATG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
29 1 0.02
30 52 0.98
ACGTcount: A:0.20, C:0.35, G:0.31, T:0.14
Consensus pattern (30 bp):
CCACACGGCCATGTGGCGTACATGGCCAAG
Found at i:38020426 original size:5 final size:5
Alignment explanation
Indices: 38020387--38020460 Score: 67
Period size: 5 Copynumber: 14.0 Consensus size: 5
38020377 AACCAAAGTG
* * *
38020387 ATTTC ATTTA ATTTT ATATTT TTATTT ATTTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT AT-TTT AT-TTT A-TTTT ATTTT ATTTT ATTTT
* *
38020435 ATTTT ATTTT GTTTTT ATTTT GTTTT
1 ATTTT ATTTT -ATTTT ATTTT ATTTT
38020461 TGTTTTGTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
5 42 0.71
6 16 0.27
7 1 0.02
ACGTcount: A:0.19, C:0.01, G:0.03, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:38020473 original size:11 final size:11
Alignment explanation
Indices: 38020405--38020518 Score: 89
Period size: 11 Copynumber: 10.9 Consensus size: 11
38020395 TAATTTTATA
*
38020405 TTTTTA-TTTA
1 TTTTTATTTTG
38020415 TTTTTATTTT-
1 TTTTTATTTTG
*
38020425 ATTTTATTTT-
1 TTTTTATTTTG
*
38020435 ATTTTATTTTG
1 TTTTTATTTTG
38020446 TTTTTATTTTG
1 TTTTTATTTTG
*
38020457 TTTTTGTTTTG
1 TTTTTATTTTG
*
38020468 TTTTTGCTTTTG
1 TTTTT-ATTTTG
*
38020480 -CTTT-TTTTG
1 TTTTTATTTTG
*
38020489 TTTTTAATTT-
1 TTTTTATTTTG
**
38020499 TAATT-TTTTG
1 TTTTTATTTTG
38020509 TTTTTATTTT
1 TTTTTATTTT
38020519 ATTCTGCAGT
Statistics
Matches: 85, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
9 8 0.09
10 34 0.40
11 38 0.45
12 5 0.06
ACGTcount: A:0.11, C:0.02, G:0.07, T:0.80
Consensus pattern (11 bp):
TTTTTATTTTG
Found at i:38020512 original size:19 final size:20
Alignment explanation
Indices: 38020482--38020519 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
38020472 TGCTTTTGCT
38020482 TTTTTTGTTTTTAATTTTAA
1 TTTTTTGTTTTTAATTTTAA
38020502 TTTTTTGTTTTT-ATTTTA
1 TTTTTTGTTTTTAATTTTA
38020520 TTCTGCAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (20 bp):
TTTTTTGTTTTTAATTTTAA
Found at i:38021542 original size:8 final size:8
Alignment explanation
Indices: 38021529--38021557 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
38021519 AATCAAAGGA
38021529 AAAAAAAG
1 AAAAAAAG
38021537 AAAAAAAG
1 AAAAAAAG
38021545 -AAAAAAG
1 AAAAAAAG
38021552 AAAAAA
1 AAAAAA
38021558 TATATATCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:38047854 original size:17 final size:17
Alignment explanation
Indices: 38047832--38047888 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
38047822 CAAATTAGCA
38047832 TCCCACTACTAACCACC
1 TCCCACTACTAACCACC
**
38047849 T-CC-C-ACTAACCAGAA
1 TCCCACTACTAACCA-CC
38047864 TCCCACTACTAACCACC
1 TCCCACTACTAACCACC
*
38047881 TCGCACTA
1 TCCCACTA
38047889 ACCAGAATCC
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
14 8 0.26
15 2 0.06
16 4 0.13
17 9 0.29
18 8 0.26
ACGTcount: A:0.32, C:0.47, G:0.04, T:0.18
Consensus pattern (17 bp):
TCCCACTACTAACCACC
Found at i:38047872 original size:32 final size:32
Alignment explanation
Indices: 38047831--38047900 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
38047821 ACAAATTAGC
38047831 ATCCCACTACTAACCACCTCCCACTAACCAGA
1 ATCCCACTACTAACCACCTCCCACTAACCAGA
*
38047863 ATCCCACTACTAACCACCTCGCACTAACCAGA
1 ATCCCACTACTAACCACCTCCCACTAACCAGA
38047895 ATCCCA
1 ATCCCA
38047901 ACATGACCCC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.34, C:0.46, G:0.04, T:0.16
Consensus pattern (32 bp):
ATCCCACTACTAACCACCTCCCACTAACCAGA
Found at i:38050714 original size:13 final size:13
Alignment explanation
Indices: 38050696--38050720 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38050686 TAATTTTTTT
38050696 TCTATCTTAATTA
1 TCTATCTTAATTA
38050709 TCTATCTTAATT
1 TCTATCTTAATT
38050721 GCTTTCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.00, T:0.56
Consensus pattern (13 bp):
TCTATCTTAATTA
Found at i:38054035 original size:20 final size:20
Alignment explanation
Indices: 38054012--38054056 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
38054002 GATATGCATT
*
38054012 CAGGGGTACGGAAGTACAAA
1 CAGGGGCACGGAAGTACAAA
* * *
38054032 CAGGGGCACGTAAGTGCAAT
1 CAGGGGCACGGAAGTACAAA
38054052 CAGGG
1 CAGGG
38054057 TATAATTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.38, T:0.11
Consensus pattern (20 bp):
CAGGGGCACGGAAGTACAAA
Found at i:38065107 original size:126 final size:126
Alignment explanation
Indices: 38064946--38065218 Score: 420
Period size: 126 Copynumber: 2.2 Consensus size: 126
38064936 AGATTAGGGT
* * * *
38064946 TGGACGCGCTTTTGCTATAGTATCTCCTAAAAAAATAATTTTAAGTAGACTTTTCTGAGCAAACA
1 TGGACGCGCTTTTGCTACAGTAGCTCCCAAAAAAATAATTTTAAGTAGACGTTTCTGAGCAAACA
*
38065011 GTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTGAAAAAAGCTCCCACG
66 GTGTCAAAAACACTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTGAAAAAAGCTCCCACG
* * * *
38065072 TGGATGCGCTTTTGCTACAGTAGCTCCCGAAAAAATAATTTTGAGTGGACGTTTCTGAGCAAACA
1 TGGACGCGCTTTTGCTACAGTAGCTCCCAAAAAAATAATTTTAAGTAGACGTTTCTGAGCAAACA
* * * * *
38065137 GTGTCAAAAACATTTTAAGGAGGATGCTTTGTCAGCAGAAGTATTGAAAGAAGCTCCCACG
66 GTGTCAAAAACACTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTGAAAAAAGCTCCCACG
38065198 TGGACGCGCTTTTGCTACAGT
1 TGGACGCGCTTTTGCTACAGT
38065219 GGCGCATGGC
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 132 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (126 bp):
TGGACGCGCTTTTGCTACAGTAGCTCCCAAAAAAATAATTTTAAGTAGACGTTTCTGAGCAAACA
GTGTCAAAAACACTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTGAAAAAAGCTCCCACG
Found at i:38068000 original size:26 final size:26
Alignment explanation
Indices: 38067964--38068019 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
38067954 TTTCTCGAAG
38067964 TTTTACCAGGGGCAAAATCGTCAAAA
1 TTTTACCAGGGGCAAAATCGTCAAAA
* * *
38067990 TTTTACTAGGGGTAAAATTGTCAAAA
1 TTTTACCAGGGGCAAAATCGTCAAAA
38068016 TTTT
1 TTTT
38068020 GCTACAAGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (26 bp):
TTTTACCAGGGGCAAAATCGTCAAAA
Found at i:38068032 original size:26 final size:26
Alignment explanation
Indices: 38067975--38068033 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 26
38067965 TTTACCAGGG
***
38067975 GCAAAATCGTCAAAATTTTACTAGGG
1 GCAAAATCGTCAAAATTTTACTACAA
* * *
38068001 GTAAAATTGTCAAAATTTTGCTACAA
1 GCAAAATCGTCAAAATTTTACTACAA
38068027 GCAAAAT
1 GCAAAAT
38068034 AGGGATGATA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (26 bp):
GCAAAATCGTCAAAATTTTACTACAA
Found at i:38069665 original size:17 final size:17
Alignment explanation
Indices: 38069635--38069668 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
38069625 AGTGTGATAT
*
38069635 AACTCTAACAAGCTTCC
1 AACTCGAACAAGCTTCC
*
38069652 AACTCGAACGAGCTTCC
1 AACTCGAACAAGCTTCC
38069669 GATTCGTTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.35, G:0.12, T:0.21
Consensus pattern (17 bp):
AACTCGAACAAGCTTCC
Found at i:38075765 original size:22 final size:22
Alignment explanation
Indices: 38075714--38075766 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
38075704 CCAAGTGATG
* *
38075714 AAAACGTGAAACTTAAACTAAC
1 AAAACATGAAACTGAAACTAAC
* **
38075736 AAAGCATGAAACTGAAACTAGT
1 AAAACATGAAACTGAAACTAAC
38075758 AAAACATGA
1 AAAACATGA
38075767 CTCTATGACT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.55, C:0.15, G:0.13, T:0.17
Consensus pattern (22 bp):
AAAACATGAAACTGAAACTAAC
Found at i:38076510 original size:138 final size:138
Alignment explanation
Indices: 38076208--38076521 Score: 391
Period size: 138 Copynumber: 2.3 Consensus size: 138
38076198 ATAAGGAGAC
* * * * * * *
38076208 GCCTTTGTGGAAATTTTCATATAAGTGAGCCTTTGTGGTTGTTTGTATTAAAGGAAAGCCTTTGT
1 GCCTTTATGGCAATTTCCATAAAAGTGAGTCGTTGTGGTTGTTTATATTAAAGGAAAGCCTTTGT
* * *
38076273 GCTAAATATCTGATAAGGAATACCTTTATGGTAATCTATAAGGAGACACCTTTGTGGCGCAATCT
66 GCAAAATATCTGATAAGGAATACATTTATGGTAATCTATAAGGAAACACCTTTGTGGCGCAATCT
38076338 AAAGAAGT
131 AAAGAAGT
* * * * * *
38076346 GCTTTTATGGTAATTTCTATACAAGTGAGTCGTTGTGGTTGTTTATGTTAAAGGAATGCCTTTGT
1 GCCTTTATGGCAATTTCCATAAAAGTGAGTCGTTGTGGTTGTTTATATTAAAGGAAAGCCTTTGT
* * * *
38076411 GGAAAATTTAT-TG-TAAGGAATATATTTATGGTAATCTATAAGGAAACACTTTTTTGGCGCAAT
66 GCAAAA--TATCTGATAAGGAATACATTTATGGTAATCTATAAGGAAACACCTTTGTGGCGCAAT
38076474 CTAAAGAAGT
129 CTAAAGAAGT
*
38076484 GCCTTTATGGCAATTTCCGTAAAAGTGAGT-GTTTGTGG
1 GCCTTTATGGCAATTTCCATAAAAGTGAGTCG-TTGTGG
38076522 CTATCTCTAA
Statistics
Matches: 150, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
137 1 0.01
138 144 0.96
139 2 0.01
140 3 0.02
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (138 bp):
GCCTTTATGGCAATTTCCATAAAAGTGAGTCGTTGTGGTTGTTTATATTAAAGGAAAGCCTTTGT
GCAAAATATCTGATAAGGAATACATTTATGGTAATCTATAAGGAAACACCTTTGTGGCGCAATCT
AAAGAAGT
Found at i:38092434 original size:59 final size:59
Alignment explanation
Indices: 38092342--38092462 Score: 226
Period size: 59 Copynumber: 2.1 Consensus size: 59
38092332 ATAAGTTAAA
38092342 CAAGTTGAGACATGCTCAGCAATTTCCCTTTTCATGT-CAGACCACCAATAAGAGCCCTT
1 CAAGTTGAGACATGCTCAGCAATTTCCCTTTTCAT-TCCAGACCACCAATAAGAGCCCTT
38092401 CAAGTTGAGACATGCTCAGCAATTTCCCTTTTCATTCCAGACCACCAATAAGAGCCCTT
1 CAAGTTGAGACATGCTCAGCAATTTCCCTTTTCATTCCAGACCACCAATAAGAGCCCTT
38092460 CAA
1 CAA
38092463 ATCTTTGTAC
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
58 1 0.02
59 60 0.98
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (59 bp):
CAAGTTGAGACATGCTCAGCAATTTCCCTTTTCATTCCAGACCACCAATAAGAGCCCTT
Found at i:38093982 original size:23 final size:23
Alignment explanation
Indices: 38093956--38094001 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
38093946 CTACAATATA
*
38093956 CAAAAAATATTAAAAATGACAAC
1 CAAAAAATATTAAAAACGACAAC
*
38093979 CAAATAATATTAAAAACGACAAC
1 CAAAAAATATTAAAAACGACAAC
38094002 AGAACAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.63, C:0.15, G:0.04, T:0.17
Consensus pattern (23 bp):
CAAAAAATATTAAAAACGACAAC
Found at i:38094053 original size:12 final size:12
Alignment explanation
Indices: 38094026--38094074 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
38094016 AACAACTGTG
*
38094026 AAACAACA-ATA
1 AAACAACACAAA
38094037 AAACAACACAAA
1 AAACAACACAAA
*
38094049 AAACAACACCAA
1 AAACAACACAAA
*
38094061 CAACAACACCAAA
1 AAACAACA-CAAA
38094074 A
1 A
38094075 TAGCACCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
11 8 0.26
12 20 0.65
13 3 0.10
ACGTcount: A:0.69, C:0.29, G:0.00, T:0.02
Consensus pattern (12 bp):
AAACAACACAAA
Found at i:38098632 original size:22 final size:21
Alignment explanation
Indices: 38098583--38098634 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
38098573 AATAATTATG
*
38098583 TTAA-ATTATATTTTATAGTA
1 TTAATATTATATTTTATAATA
38098603 TTATATATTATGATTTTAGTAAT-
1 TTA-ATATTAT-ATTTTA-TAATA
38098626 TTAATATTA
1 TTAATATTA
38098635 AGAATATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.11
21 1 0.04
22 11 0.41
23 9 0.33
24 3 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (21 bp):
TTAATATTATATTTTATAATA
Found at i:38098662 original size:121 final size:120
Alignment explanation
Indices: 38098485--38098708 Score: 403
Period size: 121 Copynumber: 1.9 Consensus size: 120
38098475 ATTTACAAAA
* * *
38098485 ATATATTATGATTTTAGTAAATTCATATGAGAATATTTAATATTAAGAATTTTATTAAATTATAT
1 ATATATTATGATTTTAGTAAATTAATATAAGAATATCTAATATTAAGAATTTTATTAAATTATAT
38098550 ATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
66 ATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
*
38098605 ATATATTATGATTTTAGTAATTTAATATTAAGAATATCTAATATTAAGAATTTTATTAAATTATA
1 ATATATTATGATTTTAGTAAATTAATA-TAAGAATATCTAATATTAAGAATTTTATTAAATTATA
38098670 TATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
65 TATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
38098709 ATATGATTAA
Statistics
Matches: 99, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
120 25 0.25
121 74 0.75
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (120 bp):
ATATATTATGATTTTAGTAAATTAATATAAGAATATCTAATATTAAGAATTTTATTAAATTATAT
ATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
Found at i:38098945 original size:16 final size:16
Alignment explanation
Indices: 38098921--38098957 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
38098911 TTGAATTGCT
*
38098921 ATTACGCCTCTATTCC
1 ATTATGCCTCTATTCC
38098937 ATTATGCCTCTATTCC
1 ATTATGCCTCTATTCC
38098953 ATTAT
1 ATTAT
38098958 AGCGAACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.30, G:0.05, T:0.43
Consensus pattern (16 bp):
ATTATGCCTCTATTCC
Found at i:38100984 original size:14 final size:15
Alignment explanation
Indices: 38100949--38100985 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
38100939 TCTGCACAAG
38100949 AAAAAAA-CAAACAC
1 AAAAAAATCAAACAC
38100963 AAAGAAAATCAAACA-
1 AAA-AAAATCAAACAC
38100978 AAAAAAAT
1 AAAAAAAT
38100986 AAAAGAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 8 0.38
15 7 0.33
16 6 0.29
ACGTcount: A:0.78, C:0.14, G:0.03, T:0.05
Consensus pattern (15 bp):
AAAAAAATCAAACAC
Found at i:38104510 original size:41 final size:41
Alignment explanation
Indices: 38104459--38104619 Score: 250
Period size: 41 Copynumber: 3.9 Consensus size: 41
38104449 TCAGGTTTAT
*
38104459 TGCTAGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTGA
1 TGCTGGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTGA
* * * *
38104500 TGCCGATGAAACATTTCAAACTTTATGTCTAGCAGGCTTGA
1 TGCTGGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTGA
*
38104541 TGCTGGTGAAACATTTCAGACTGTACGTCTAGCAGGCTTGA
1 TGCTGGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTGA
* *
38104582 CGCTGGTGAAACATTTCAGACTTTATGTCTAGCAGGCT
1 TGCTGGTGAAACATTTCAGACTTTACGTCTAGCAGGCT
38104620 AAGTGCCAGT
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 107 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (41 bp):
TGCTGGTGAAACATTTCAGACTTTACGTCTAGCAGGCTTGA
Found at i:38112151 original size:74 final size:75
Alignment explanation
Indices: 38112005--38112157 Score: 184
Period size: 74 Copynumber: 2.1 Consensus size: 75
38111995 GGATCTATAA
* ** ** *
38112005 TATGCAAATATACATGTATATGTTCTTGTATTGAATTTAAGTATGCCATTTATACAAGTTTATAT
1 TATGCAAATATACATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATACAAGTACATAG
38112070 GAGGTTCGAT
66 GAGGTTCGAT
* * ***
38112080 TATGCAAATATGCATGTATATGTTC-TGTAATGAGTTTAAGTATGAAATTTATATTTGTACA-AG
1 TATGCAAATATACATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATACAAGTACATA-
38112143 GGAGGTTCGAT
65 GGAGGTTCGAT
38112154 TATG
1 TATG
38112158 TATGTTTATT
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
73 1 0.02
74 41 0.62
75 24 0.36
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (75 bp):
TATGCAAATATACATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATACAAGTACATAG
GAGGTTCGAT
Found at i:38112517 original size:41 final size:41
Alignment explanation
Indices: 38112472--38112571 Score: 146
Period size: 41 Copynumber: 2.4 Consensus size: 41
38112462 TTATTGCTAG
* *
38112472 TGAAACATTTCAGACTTTACGTCTAGCAGGCTTGATGCCAA
1 TGAAACATTTCAGACTTTACGTCTAGCAAGCTTGACGCCAA
* ***
38112513 TGAAACATTTCAGACTTTATGTCTAGCAAGCTTGACGCTGG
1 TGAAACATTTCAGACTTTACGTCTAGCAAGCTTGACGCCAA
38112554 TGAAACATTTCAGACTTT
1 TGAAACATTTCAGACTTT
38112572 GTTTATTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (41 bp):
TGAAACATTTCAGACTTTACGTCTAGCAAGCTTGACGCCAA
Found at i:38112592 original size:19 final size:19
Alignment explanation
Indices: 38112568--38112604 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
38112558 ACATTTCAGA
38112568 CTTTGTTTATTAAAAATGT
1 CTTTGTTTATTAAAAATGT
38112587 CTTTGTTTATTAAAAATG
1 CTTTGTTTATTAAAAATG
38112605 GTTAGAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (19 bp):
CTTTGTTTATTAAAAATGT
Found at i:38121705 original size:18 final size:18
Alignment explanation
Indices: 38121682--38121729 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
38121672 ATTCAAGTTT
38121682 AATATTATTATATTATTA
1 AATATTATTATATTATTA
* *
38121700 AATATTTTTAT-TTTTTA
1 AATATTATTATATTATTA
*
38121717 AAGTATTAATATA
1 AA-TATTATTATA
38121730 AAATATTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
AATATTATTATATTATTA
Found at i:38122583 original size:24 final size:22
Alignment explanation
Indices: 38122533--38122584 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 22
38122523 ATAAATACTC
*
38122533 AAAAATAAATATTTTTATAATA
1 AAAAATAAATATTTTAATAATA
* *
38122555 TAAAATATGAATATTTTAATTATA
1 -AAAA-ATAAATATTTTAATAATA
38122579 AAAAAT
1 AAAAAT
38122585 GGGTATTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 2 0.08
23 8 0.32
24 15 0.60
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AAAAATAAATATTTTAATAATA
Found at i:38122704 original size:28 final size:30
Alignment explanation
Indices: 38122673--38122739 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 30
38122663 TGTAATTTAA
*
38122673 ATTAAGTTTTAAT-TA-GGTATTTATTATT
1 ATTAAGTTTTAATATATGATATTTATTATT
38122701 ATTAAG-TTT-ATATATGATATTTATTATT
1 ATTAAGTTTTAATATATGATATTTATTATT
* *
38122729 ATAAAATTTTA
1 ATTAAGTTTTA
38122740 TCTTATTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
26 2 0.06
27 5 0.16
28 22 0.69
29 3 0.09
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.55
Consensus pattern (30 bp):
ATTAAGTTTTAATATATGATATTTATTATT
Found at i:38131362 original size:36 final size:38
Alignment explanation
Indices: 38131310--38131380 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
38131300 CATTCTGAGC
*
38131310 AAATGTTCTTTTA-TTTTTT-CATTTCAATCATAACCA
1 AAATATTCTTTTATTTTTTTCCATTTCAATCATAACCA
*
38131346 AAATATTCTTTTATTTTTTTCCATTTCATTCATAA
1 AAATATTCTTTTATTTTTTTCCATTTCAATCATAA
38131381 TCATACTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 12 0.39
37 6 0.19
38 13 0.42
ACGTcount: A:0.30, C:0.15, G:0.01, T:0.54
Consensus pattern (38 bp):
AAATATTCTTTTATTTTTTTCCATTTCAATCATAACCA
Found at i:38131964 original size:19 final size:20
Alignment explanation
Indices: 38131940--38131986 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
38131930 TGCAGGAGAG
38131940 GCAAAAAAAAA-A-CAAATAA
1 GCAAAAAAAAAGAGCAAA-AA
38131959 GCAAAAAAAAAGAGCAAAAA
1 GCAAAAAAAAAGAGCAAAAA
38131979 -CAAAAAAA
1 GCAAAAAAA
38131987 CAAAAACCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 19 0.73
20 3 0.12
21 4 0.15
ACGTcount: A:0.79, C:0.11, G:0.09, T:0.02
Consensus pattern (20 bp):
GCAAAAAAAAAGAGCAAAAA
Found at i:38131974 original size:13 final size:14
Alignment explanation
Indices: 38131947--38131993 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
38131937 GAGGCAAAAA
38131947 AAAAACAAATA-AGC
1 AAAAACAAA-AGAGC
38131961 AAAAA-AAAAGAGC
1 AAAAACAAAAGAGC
* *
38131974 AAAAACAAAAAAAC
1 AAAAACAAAAGAGC
38131988 AAAAAC
1 AAAAAC
38131994 CTCTACTGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 1 0.03
13 11 0.38
14 17 0.59
ACGTcount: A:0.79, C:0.13, G:0.06, T:0.02
Consensus pattern (14 bp):
AAAAACAAAAGAGC
Found at i:38133439 original size:45 final size:44
Alignment explanation
Indices: 38133335--38133447 Score: 133
Period size: 44 Copynumber: 2.5 Consensus size: 44
38133325 GCCACTAATT
* * * *
38133335 TTATCCCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTC
1 TTATCTCCCTAAAGTTGTAGTGGAGCAGCTTGAAGATACAAGTC
38133379 TTATCTCCCTAAAGTTGTAGTGGAGCAGACTT-AAGATAGCGAA-TC
1 TTATCTCCCTAAAGTTGTAGTGGAGCAG-CTTGAAGATA-C-AAGTC
38133424 TTAAT-TCCCTAAAGTTGTAGTGGA
1 TT-ATCTCCCTAAAGTTGTAGTGGA
38133448 ATAGACTCAA
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
44 31 0.51
45 26 0.43
46 4 0.07
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (44 bp):
TTATCTCCCTAAAGTTGTAGTGGAGCAGCTTGAAGATACAAGTC
Found at i:38133825 original size:143 final size:143
Alignment explanation
Indices: 38133559--38134354 Score: 992
Period size: 143 Copynumber: 5.6 Consensus size: 143
38133549 AGTTACAAGT
* * * ** * *
38133559 CTTATCTCCTTGAAGATGCAGTGGAGCAGACTGAAGACAGTGAATCTTATTTCCCTAGTGTTGTA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCA
* * * * *
38133624 --AGAACAGGTTAAAGCTACAAATTATGGTGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
66 GTGGAACAGATTAAAGCTACAAATTATAGCGGAACTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
*
38133687 TGAAGCCACTAGC
131 TGAAGCCACCAGC
* * * * * *
38133700 CTTATCTCCCTGAAGTCGCAGCGGAGTAGACTGAAGACAACAAATCTTATTTCCCTGGTGTTACA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCA
* * * *
38133765 GTGTAACAGATTAAAGCTACAAATTATGGCGGAACTTATCTTCTTGAAGTTGCAGTGGAGCAAAT
66 GTGGAACAGATTAAAGCTACAAATTATAGCGGAACTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
*
38133830 TGAAGCCACCAGT
131 TGAAGCCACCAGC
* * *
38133843 CTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGGCGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCA
* *
38133908 GTGGAACAGATTAATGCTACAAATTATAGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
66 GTGGAACAGATTAAAGCTACAAATTATAGCGGAACTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
*
38133973 TGAAGTCACCAGC
131 TGAAGCCACCAGC
* *
38133986 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACT-AAAAAAAGCGAATCTTATTTCCCTAGCGTTGC
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAA-CGAATCTTATTTCCCTAGCGTTGC
* ** * *
38134050 AGTGGAATAGATTAAAATTACAAAATATAGCGGATA-TTATCTTCCTGAAGATGCAGTGGAGCAG
65 AGTGGAACAGATTAAAGCTACAAATTATAGCGGA-ACTTATCTTCCTGAAGTTGCAGTGGAGCAG
*
38134114 ATTGAAGCCACCAAC
129 ATTGAAGCCACCAGC
* * * * * *
38134129 CTTATCTCCCTGAAGTTGCAGCGGAGCATACTAAAAATAGCGAATCTTATTTCCCTGGCGTTGCA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCA
* ** * *
38134194 GTGG-ATAGATTAAAATTACAAAATATAGCGGATA-TTATCTTCCTGAAGTTGCAGTGGAGCATA
66 GTGGAACAGATTAAAGCTACAAATTATAGCGGA-ACTTATCTTCCTGAAGTTGCAGTGGAGCAGA
38134257 TTGAAGCCACCAGC
130 TTGAAGCCACCAGC
* * * * * * **
38134271 CCTATTTCCCTGAAGTTGCAGCGAAGCAGATTGAAGACAGCGAATCTTATTTTCCTAGTATTGCA
1 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCA
* *
38134336 ATGGAACAGATTGAAGCTA
66 GTGGAACAGATTAAAGCTA
38134355 TAAAGTGCAG
Statistics
Matches: 576, Mismatches: 73, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
141 54 0.09
142 131 0.23
143 386 0.67
144 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (143 bp):
CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCA
GTGGAACAGATTAAAGCTACAAATTATAGCGGAACTTATCTTCCTGAAGTTGCAGTGGAGCAGAT
TGAAGCCACCAGC
Found at i:38133878 original size:44 final size:44
Alignment explanation
Indices: 38133799--38134017 Score: 143
Period size: 44 Copynumber: 4.7 Consensus size: 44
38133789 TATGGCGGAA
* * * *
38133799 CTTATCTTCTTGAAGTTGCAGTGGAGCAAATTGAAGCCACCAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGCCACCAGT
* * * *
38133843 CTTATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGACAACGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-CCACCAGT
* ** * * * *
38133888 CTTATTTCCCTGGCGTTGCAGTGGAACAGA-TTAATGCTACAAATTATAGCGGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-GC--C-------ACCAG-T
* * * *
38133942 CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACCAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGCCACCAGT
*
38133986 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
38134018 AAAAAAAGCG
Statistics
Matches: 132, Mismatches: 30, Indels: 26
0.70 0.16 0.14
Matches are distributed among these distances:
44 66 0.50
45 34 0.26
52 1 0.01
53 1 0.01
54 27 0.20
55 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGCCACCAGT
Found at i:38135881 original size:26 final size:24
Alignment explanation
Indices: 38135840--38135928 Score: 79
Period size: 26 Copynumber: 3.5 Consensus size: 24
38135830 TTTTATCATC
* *
38135840 ATTTATTTTAAGTTTTTATATTTATT
1 ATTTA-TTTAAATTTTT-TATATATT
* *
38135866 ATTTATTTGAAATTTTTTACATATA
1 ATTTATTT-AAATTTTTTATATATT
*
38135891 ATTTATTTAAATTTCTTTTATAAATT
1 ATTTATTTAAA-TT-TTTTATATATT
38135917 ATTTATTATAAA
1 ATTTATT-TAAA
38135929 CTTATGTATA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
24 3 0.06
25 18 0.35
26 27 0.52
27 4 0.08
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (24 bp):
ATTTATTTAAATTTTTTATATATT
Found at i:38142124 original size:19 final size:19
Alignment explanation
Indices: 38142100--38142136 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
38142090 TCCAACAATA
38142100 AAAAATTTGATTACGGTGC
1 AAAAATTTGATTACGGTGC
38142119 AAAAATTTGATTACGGTG
1 AAAAATTTGATTACGGTG
38142137 GGTGACAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (19 bp):
AAAAATTTGATTACGGTGC
Found at i:38144696 original size:35 final size:36
Alignment explanation
Indices: 38144657--38144729 Score: 121
Period size: 35 Copynumber: 2.0 Consensus size: 36
38144647 TTGAGTAATT
38144657 AAATATTAATTAAATAGGA-TTTAATTGTAAAACAA
1 AAATATTAATTAAATAGGATTTTAATTGTAAAACAA
*
38144692 AAATATTACTTAAATAGGATTTTTAATTGTAAAACAA
1 AAATATTAATTAAATAGGA-TTTTAATTGTAAAACAA
38144729 A
1 A
38144730 GGAAGTTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 18 0.51
37 17 0.49
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.36
Consensus pattern (36 bp):
AAATATTAATTAAATAGGATTTTAATTGTAAAACAA
Found at i:38147376 original size:14 final size:14
Alignment explanation
Indices: 38147357--38147384 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38147347 ATGACATGAA
38147357 CATAGTCGTTTAAT
1 CATAGTCGTTTAAT
38147371 CATAGTCGTTTAAT
1 CATAGTCGTTTAAT
38147385 GACACACGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (14 bp):
CATAGTCGTTTAAT
Found at i:38149466 original size:6 final size:6
Alignment explanation
Indices: 38149413--38149458 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
38149403 AATTTAGCCA
38149413 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
38149459 TTGTTTTTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:38149477 original size:18 final size:18
Alignment explanation
Indices: 38149412--38149479 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
38149402 TAATTTAGCC
*
38149412 ATTTTATTTTTATTTTTA
1 ATTTAATTTTTATTTTTA
* *
38149430 TTTTTATTTTTATTTTTA
1 ATTTAATTTTTATTTTTA
* * *
38149448 TTTTTATTTTTTTGTTTTTA
1 -ATTTA-ATTTTTATTTTTA
38149468 ATTTAATTTTTA
1 ATTTAATTTTTA
38149480 CATTCTAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
18 22 0.54
19 8 0.20
20 11 0.27
ACGTcount: A:0.19, C:0.00, G:0.01, T:0.79
Consensus pattern (18 bp):
ATTTAATTTTTATTTTTA
Found at i:38152800 original size:6 final size:6
Alignment explanation
Indices: 38152774--38152841 Score: 70
Period size: 6 Copynumber: 11.5 Consensus size: 6
38152764 AGTGATTTCA
* *
38152774 TTTAGT TTTATGT TTTA-- TTTATT TTTATT TTTACT TTTATT TTTATT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
38152821 GTTATT TATT-TT TTTATT TTT
1 TTTATT T-TTATT TTTATT TTT
38152842 CAAATTTATA
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
4 4 0.08
5 2 0.04
6 39 0.75
7 7 0.13
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:38154894 original size:29 final size:27
Alignment explanation
Indices: 38154876--38154945 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
38154866 ATATTAAGTC
38154876 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
38154903 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
38154931 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
38154946 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:38154939 original size:28 final size:28
Alignment explanation
Indices: 38154876--38154973 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
38154866 ATATTAAGTC
*
38154876 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
38154903 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
38154931 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
38154960 CGCACACTTAGTGC
1 CGCACACTTAGTGC
38154974 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:38159530 original size:4 final size:4
Alignment explanation
Indices: 38159496--38159569 Score: 57
Period size: 4 Copynumber: 18.5 Consensus size: 4
38159486 CCAAATAAGT
* *
38159496 AATA AAT- AATAA AATAA AATA AAGT- AATA AATA AAGTA AAGA AAAA
1 AATA AATA AAT-A AAT-A AATA AA-TA AATA AATA AA-TA AATA AATA
*
38159542 AAT- AATA AAT- AATA AATA AAAA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
38159570 AATAAAAATT
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
3 10 0.17
4 35 0.60
5 13 0.22
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:38159572 original size:21 final size:22
Alignment explanation
Indices: 38159495--38159578 Score: 100
Period size: 22 Copynumber: 3.7 Consensus size: 22
38159485 TCCAAATAAG
38159495 TAATAAATAATAAAATAAAATAAA
1 TAATAAATAAT-AAATAAAA-AAA
*
38159519 GTAATAAATAAAGTAAAGAAAAAAA
1 -TAATAAAT-AA-TAAATAAAAAAA
38159544 TAATAAATAATAAATAAAAAAA
1 TAATAAATAATAAATAAAAAAA
38159566 TAA-AAATAA-AAAT
1 TAATAAATAATAAAT
38159579 TGGGTTGCCT
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
20 4 0.07
21 6 0.11
22 14 0.25
23 2 0.04
24 8 0.15
25 11 0.20
26 9 0.16
27 1 0.02
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (22 bp):
TAATAAATAATAAATAAAAAAA
Found at i:38159576 original size:5 final size:6
Alignment explanation
Indices: 38159496--38159578 Score: 50
Period size: 6 Copynumber: 13.5 Consensus size: 6
38159486 CCAAATAAGT
* *
38159496 AATAAA TAAT-AA AAT-AA AAT-AA AGTAATA AAT-AA AGTAAA GAA-AAA
1 AATAAA -AATAAA AATAAA AATAAA AATAA-A AATAAA AATAAA -AATAAA
38159542 AATAATA AATAATA AATAAAAA AATAAA AATAAA AAT
1 AATAA-A AATAA-A AAT--AAA AATAAA AATAAA AAT
38159579 TGGGTTGCCT
Statistics
Matches: 64, Mismatches: 4, Indels: 17
0.75 0.05 0.20
Matches are distributed among these distances:
5 17 0.27
6 23 0.36
7 18 0.28
8 4 0.06
9 2 0.03
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (6 bp):
AATAAA
Found at i:38162003 original size:24 final size:24
Alignment explanation
Indices: 38161969--38162015 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
38161959 TCATGCTAAG
38161969 ACAAACAATATGAAGCTCTTTCAA
1 ACAAACAATATGAAGCTCTTTCAA
*
38161993 ACAAACCATATGAAGCTCTTTCA
1 ACAAACAATATGAAGCTCTTTCA
38162016 GATGCTTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.26
Consensus pattern (24 bp):
ACAAACAATATGAAGCTCTTTCAA
Found at i:38163531 original size:15 final size:14
Alignment explanation
Indices: 38163510--38163545 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
38163500 ATAATCTTTA
*
38163510 ATAATTATCTTAAT
1 ATAATTATCCTAAT
38163524 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
38163539 ATAATTA
1 ATAATTA
38163546 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:38165074 original size:16 final size:16
Alignment explanation
Indices: 38165053--38165117 Score: 61
Period size: 16 Copynumber: 4.4 Consensus size: 16
38165043 GTCTCATAAT
38165053 CATTTCTCATATTTTC
1 CATTTCTCATATTTTC
*
38165069 CATTTC-AATATTTTC
1 CATTTCTCATATTTTC
38165084 TCA--TCTCATA--TT-
1 -CATTTCTCATATTTTC
*
38165096 CATTTCTCATCTTTTC
1 CATTTCTCATATTTTC
38165112 CATTTC
1 CATTTC
38165118 AATATCTATC
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
11 2 0.05
13 8 0.21
14 2 0.05
15 13 0.33
16 14 0.36
ACGTcount: A:0.20, C:0.26, G:0.00, T:0.54
Consensus pattern (16 bp):
CATTTCTCATATTTTC
Found at i:38165081 original size:15 final size:15
Alignment explanation
Indices: 38165061--38165122 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
38165051 ATCATTTCTC
38165061 ATATTTTCCATTTCA
1 ATATTTTCCATTTCA
*
38165076 ATATTTTCTCATCTC-
1 ATATTTTC-CATTTCA
*
38165091 ATA--TT-CATTTCTC
1 ATATTTTCCATTTC-A
*
38165104 ATCTTTTCCATTTCA
1 ATATTTTCCATTTCA
38165119 ATAT
1 ATAT
38165123 CTATCACATA
Statistics
Matches: 36, Mismatches: 5, Indels: 12
0.68 0.09 0.23
Matches are distributed among these distances:
11 5 0.14
13 4 0.11
15 16 0.44
16 11 0.31
ACGTcount: A:0.24, C:0.23, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATTTTCCATTTCA
Found at i:38165091 original size:43 final size:43
Alignment explanation
Indices: 38165037--38165122 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
38165027 TCATATCTCA
*
38165037 TTTCTCGTCTCATAATCATTTCTCATATTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
* *
38165080 TTTCTCATCTCATATTCATTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
38165123 CTATCACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.22, C:0.24, G:0.01, T:0.52
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
Found at i:38167617 original size:33 final size:33
Alignment explanation
Indices: 38167545--38167607 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
38167535 GGGTCACAAG
38167545 GCCGTGTGGCCAGGCCATTTGGAATCACCCCAA
1 GCCGTGTGGCCAGGCCATTTGGAATCACCCCAA
*
38167578 GCCGTGTGGCCAGGCCGTTTGGAATCACCC
1 GCCGTGTGGCCAGGCCATTTGGAATCACCC
38167608 TAGCCCGTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.19
Consensus pattern (33 bp):
GCCGTGTGGCCAGGCCATTTGGAATCACCCCAA
Found at i:38167764 original size:30 final size:30
Alignment explanation
Indices: 38167720--38167792 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 30
38167710 CTCACAAATG
* * *
38167720 ACACAGGCCATGTCACTAGGCTGTGTGTCTC
1 ACAC-GGCCGTGTCACCAGGCTGTATGTCTC
38167751 ACACGGCCGTGTCACCAGGCTGTATGTCTC
1 ACACGGCCGTGTCACCAGGCTGTATGTCTC
38167781 ACACGGCCGTGT
1 ACACGGCCGTGT
38167793 GACAACCCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 35 0.90
31 4 0.10
ACGTcount: A:0.18, C:0.32, G:0.27, T:0.23
Consensus pattern (30 bp):
ACACGGCCGTGTCACCAGGCTGTATGTCTC
Found at i:38175108 original size:12 final size:12
Alignment explanation
Indices: 38175091--38175130 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
38175081 TTAAGCCTAA
38175091 ATTATAATATAG
1 ATTATAATATAG
38175103 ATTATAATATAG
1 ATTATAATATAG
38175115 --T-TAATATAG
1 ATTATAATATAG
38175124 TATTATA
1 -ATTATA
38175131 TGGTATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
9 8 0.33
10 1 0.04
12 13 0.54
13 2 0.08
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (12 bp):
ATTATAATATAG
Found at i:38176975 original size:20 final size:21
Alignment explanation
Indices: 38176950--38177007 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
38176940 AGAAATTTTG
*
38176950 AAATAATATTTTAATTACA-T
1 AAATAATATTTTAATTAAATT
*
38176970 AAATAAAATATTTTTATTAAATT
1 AAAT--AATATTTTAATTAAATT
*
38176993 AAAT-TTATTTTAATT
1 AAATAATATTTTAATT
38177008 GAAAATTGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
20 13 0.42
22 13 0.42
23 5 0.16
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
AAATAATATTTTAATTAAATT
Found at i:38176995 original size:23 final size:22
Alignment explanation
Indices: 38176954--38176996 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
38176944 ATTTTGAAAT
*
38176954 AATATTTTAATTACATAAATAA
1 AATATTTTAATTAAATAAATAA
*
38176976 AATATTTTTATTAAATTAAAT
1 AATATTTTAATTAAA-TAAAT
38176997 TTATTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
AATATTTTAATTAAATAAATAA
Found at i:38190445 original size:20 final size:20
Alignment explanation
Indices: 38190420--38190463 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
38190410 TTTTGGGCAA
38190420 ATATTATTACCATAGCCTAG
1 ATATTATTACCATAGCCTAG
38190440 ATATTATTACCATAGCCTAG
1 ATATTATTACCATAGCCTAG
38190460 ATAT
1 ATAT
38190464 CCACATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (20 bp):
ATATTATTACCATAGCCTAG
Found at i:38191835 original size:20 final size:19
Alignment explanation
Indices: 38191806--38191845 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
38191796 AATTTTTTAA
38191806 TTTTAAAATTATTTTGAAT
1 TTTTAAAATTATTTTGAAT
38191825 TTTTGAAAATTATTTTGAAT
1 TTTT-AAAATTATTTTGAAT
38191845 T
1 T
38191846 ATTTTGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (19 bp):
TTTTAAAATTATTTTGAAT
Found at i:38199435 original size:20 final size:20
Alignment explanation
Indices: 38199407--38199451 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
38199397 ATCTTATTTT
* *
38199407 ATTTTATTTCAATCAAGTTG
1 ATTTAATTTCAATCAAATTG
*
38199427 ATTTAATTTTAATCAAATTG
1 ATTTAATTTCAATCAAATTG
38199447 ATTTA
1 ATTTA
38199452 TTGACTCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.51
Consensus pattern (20 bp):
ATTTAATTTCAATCAAATTG
Found at i:38199815 original size:227 final size:224
Alignment explanation
Indices: 38199423--38199879 Score: 702
Period size: 227 Copynumber: 2.0 Consensus size: 224
38199413 TTTCAATCAA
* *
38199423 GTTGATTTAATTTTAATCAAATTGATTTATTGACTCCTTTAAAGGTATTTTTTTTGGAAATTTCC
1 GTTGATTTAATTTTAATCAAATTGATTTATTGACTCCATTAAAGGTATTTTTTTTGGAAATTTCA
* *
38199488 AAAATTTCACCATGCTAAATGGCTATAAAAGGCTATGAATTCTGAAGAATTTTTCTACACTCATA
66 AAAATTTCACCATACTAAATGCCTATAAAAGGCTATGAATTCTGAAGAATTTTTCTACACTCATA
*
38199553 CTCTTTCACACCAAATTTATTTTCCTCTCAAAATTAT-TCTTTTCCTTTCTATATTTTTCAACGT
131 CTCTTTCACACCAAATTTATTTTACTCTCAAAATTATAT-TTTTCCTTTCTATATTTTTCAACGT
* * * * *
38199617 TTTGGTAATAGAAAAAGGAAATGTTTGTTC
195 TCTAGTAATAGAAAAAAGAAATGTGTGCTC
*
38199647 GTTGATTTAATTTTAATCAAATTGATTTATTGGCTCCATTAAAGGTAATTTTTTTTGGAAATTTC
1 GTTGATTTAATTTTAATCAAATTGATTTATTGACTCCATTAAAGGT-ATTTTTTTTGGAAATTTC
* *
38199712 AAAAATTTCACCATACTGAATGCCTATAAAAGGCTATATGAATTTTGAAGAATTTTTCTACACTC
65 AAAAATTTCACCATACTAAATGCCTATAAAAGGC--TATGAATTCTGAAGAATTTTTCTACACTC
* ***
38199777 ATACT-TTCTCACACCGAATTTATTTTACTCTCAAAATTATATTTTTCCTTTCTATATTTTTTGG
128 ATACTCTT-TCACACCAAATTTATTTTACTCTCAAAATTATATTTTTCCTTTCTATATTTTTCAA
38199841 CGTTCTAGTAATAGAAAAAAGAAATGTGTGCTC
192 CGTTCTAGTAATAGAAAAAAGAAATGTGTGCTC
38199874 GTTGAT
1 GTTGAT
38199880 CGCTGTAGAG
Statistics
Matches: 211, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
224 44 0.21
225 48 0.23
226 2 0.01
227 116 0.55
228 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (224 bp):
GTTGATTTAATTTTAATCAAATTGATTTATTGACTCCATTAAAGGTATTTTTTTTGGAAATTTCA
AAAATTTCACCATACTAAATGCCTATAAAAGGCTATGAATTCTGAAGAATTTTTCTACACTCATA
CTCTTTCACACCAAATTTATTTTACTCTCAAAATTATATTTTTCCTTTCTATATTTTTCAACGTT
CTAGTAATAGAAAAAAGAAATGTGTGCTC
Found at i:38201901 original size:18 final size:18
Alignment explanation
Indices: 38201880--38201915 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
38201870 TACCAAAATC
38201880 AAAATT-AAAGTTCTAAAA
1 AAAATTAAAAGTTC-AAAA
38201898 AAAATTAAAAGTTCAAAA
1 AAAATTAAAAGTTCAAAA
38201916 GTCTGTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (18 bp):
AAAATTAAAAGTTCAAAA
Found at i:38208288 original size:21 final size:21
Alignment explanation
Indices: 38208263--38208306 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
38208253 ATCAATGACA
38208263 TTCCATATCAATGACAACTCT
1 TTCCATATCAATGACAACTCT
38208284 TTCCATATCAATGACAACTCT
1 TTCCATATCAATGACAACTCT
38208305 TT
1 TT
38208307 ATCATCAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (21 bp):
TTCCATATCAATGACAACTCT
Found at i:38208534 original size:35 final size:35
Alignment explanation
Indices: 38208494--38208563 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
38208484 AACATGATAA
38208494 ATCAAGTATGTTATTACAATAATCTCATGATTGAT
1 ATCAAGTATGTTATTACAATAATCTCATGATTGAT
38208529 ATCAAGTATGTTATTACAATAATCTCATGATTGAT
1 ATCAAGTATGTTATTACAATAATCTCATGATTGAT
38208564 CTTTGGGCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.40
Consensus pattern (35 bp):
ATCAAGTATGTTATTACAATAATCTCATGATTGAT
Found at i:38215596 original size:41 final size:41
Alignment explanation
Indices: 38215533--38215636 Score: 136
Period size: 41 Copynumber: 2.5 Consensus size: 41
38215523 GTTAATTATT
* * * *
38215533 CCCTGAATTGCACATATGTGCCCCTGTTTGTACTTCGGTAC
1 CCCTAAATTGCACATACGTGCCCCTGATTATACTTCGGTAC
* * *
38215574 CCTTAAATTGCACATACATGCCCCTGATTATACTTTGGTAC
1 CCCTAAATTGCACATACGTGCCCCTGATTATACTTCGGTAC
*
38215615 CCCTGAATTGCACATACGTGCC
1 CCCTAAATTGCACATACGTGCC
38215637 ATGTTTACAC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (41 bp):
CCCTAAATTGCACATACGTGCCCCTGATTATACTTCGGTAC
Done.