Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 146 of 221
Found at i:44719081 original size:19 final size:18
Alignment explanation
Indices: 44719053--44719088 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
44719043 TACAATTAAA
*
44719053 TTTAATTAATGGAAAATC
1 TTTAATTAATGAAAAATC
44719071 TTTATATTAATGAAAAAT
1 TTTA-ATTAATGAAAAAT
44719089 TGTGCTACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (18 bp):
TTTAATTAATGAAAAATC
Found at i:44719131 original size:40 final size:40
Alignment explanation
Indices: 44719086--44719167 Score: 96
Period size: 40 Copynumber: 2.0 Consensus size: 40
44719076 ATTAATGAAA
*
44719086 AATTGTGCTACATC-AATTAAATAT-CATATGTAATTACAAT
1 AATTGTGCTACA-CAAATTAAAT-TGCATAGGTAATTACAAT
* * *
44719126 AATTGTGGTGCACAAATTAAATTGCATGGGTAATTACAAT
1 AATTGTGCTACACAAATTAAATTGCATAGGTAATTACAAT
44719166 AA
1 AA
44719168 AAATTAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
39 2 0.06
40 34 0.94
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.34
Consensus pattern (40 bp):
AATTGTGCTACACAAATTAAATTGCATAGGTAATTACAAT
Found at i:44725735 original size:12 final size:13
Alignment explanation
Indices: 44725718--44725746 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
44725708 CTCATACATG
44725718 AATAAATAAA-GC
1 AATAAATAAATGC
44725730 AATAAATAAATGC
1 AATAAATAAATGC
44725743 AATA
1 AATA
44725747 GTTATAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:44744998 original size:13 final size:13
Alignment explanation
Indices: 44744962--44745002 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
44744952 TTTGGTCAAT
*
44744962 GTTTATAATGG-C
1 GTTTATAATGGTG
*
44744974 GTGTAT-ATGGTG
1 GTTTATAATGGTG
44744986 GTTTATAATGGTG
1 GTTTATAATGGTG
44744999 GTTT
1 GTTT
44745003 TGATGAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
11 4 0.17
12 10 0.42
13 10 0.42
ACGTcount: A:0.20, C:0.02, G:0.32, T:0.46
Consensus pattern (13 bp):
GTTTATAATGGTG
Found at i:44745610 original size:25 final size:25
Alignment explanation
Indices: 44745582--44745634 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
44745572 TCAGACAGTT
* *
44745582 ACACGGCCTGGCATACGGGCATGTG
1 ACACGACCTGGCACACGGGCATGTG
* *
44745607 ACACGACCTGGCACATGGGCGTGTG
1 ACACGACCTGGCACACGGGCATGTG
44745632 ACA
1 ACA
44745635 TGGCTATGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.34, T:0.15
Consensus pattern (25 bp):
ACACGACCTGGCACACGGGCATGTG
Found at i:44750479 original size:12 final size:12
Alignment explanation
Indices: 44750459--44750537 Score: 68
Period size: 12 Copynumber: 6.3 Consensus size: 12
44750449 GAAGTTTAAG
* *
44750459 AAAATAAAACTA
1 AAAAGAAAAATA
44750471 AAAAGAAAAATAA
1 AAAAGAAAAAT-A
* *
44750484 AACAACTAAAAAGA
1 AA-AA-GAAAAATA
*
44750498 AAAAGAAAAAGA
1 AAAAGAAAAATA
*
44750510 AAAAGAAAACTA
1 AAAAGAAAAATA
*
44750522 AAAAGAAAAAGA
1 AAAAGAAAAATA
44750534 AAAA
1 AAAA
44750538 AATAAAACTA
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
12 40 0.73
13 5 0.09
14 5 0.09
15 5 0.09
ACGTcount: A:0.80, C:0.05, G:0.09, T:0.06
Consensus pattern (12 bp):
AAAAGAAAAATA
Found at i:44750480 original size:18 final size:18
Alignment explanation
Indices: 44750459--44750549 Score: 83
Period size: 18 Copynumber: 4.8 Consensus size: 18
44750449 GAAGTTTAAG
44750459 AAAATAAAACTAAAAAGA
1 AAAATAAAACTAAAAAGA
44750477 AAAATAAAACAACTAAAAAGA
1 AAAAT--AA-AACTAAAAAGA
* **
44750498 AAAAGAAAAAGAAAAAGA
1 AAAATAAAACTAAAAAGA
* **
44750516 AAACTAAAAAGAAAAAGAAA
1 AAAATAAAACTAAAAAG--A
44750536 AAAATAAAACTAAA
1 AAAATAAAACTAAA
44750550 TGATCATCAT
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
18 29 0.48
19 2 0.03
20 14 0.23
21 15 0.25
ACGTcount: A:0.79, C:0.05, G:0.08, T:0.08
Consensus pattern (18 bp):
AAAATAAAACTAAAAAGA
Found at i:44750492 original size:21 final size:21
Alignment explanation
Indices: 44750466--44750506 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
44750456 AAGAAAATAA
*
44750466 AACTAAAAAGAAAAATAAAAC
1 AACTAAAAAGAAAAAGAAAAC
44750487 AACTAAAAAGAAAAAGAAAA
1 AACTAAAAAGAAAAAGAAAA
44750507 AGAAAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (21 bp):
AACTAAAAAGAAAAAGAAAAC
Found at i:44750544 original size:6 final size:6
Alignment explanation
Indices: 44750491--44750537 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
44750481 TAAAACAACT
**
44750491 AAAAAG AAAAAG AAAAAG AAAAAG AAAACT AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
44750538 AATAAAACTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.83, C:0.02, G:0.13, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:44750549 original size:6 final size:6
Alignment explanation
Indices: 44750459--44750537 Score: 50
Period size: 6 Copynumber: 12.7 Consensus size: 6
44750449 GAAGTTTAAG
* * * * *
44750459 AAAATA AAACTA AAAAGA AAAATAA AACAACTA AAAAGA AAAAGA AAAAGA
1 AAAATA AAAATA AAAATA AAAAT-A AA-AA-TA AAAATA AAAATA AAAATA
* * * *
44750510 AAAAGA AAACTA AAAAGA AAAAGA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
44750538 AATAAAACTA
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
6 50 0.82
7 5 0.08
8 5 0.08
9 1 0.02
ACGTcount: A:0.80, C:0.05, G:0.09, T:0.06
Consensus pattern (6 bp):
AAAATA
Found at i:44753143 original size:29 final size:30
Alignment explanation
Indices: 44753093--44753149 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
44753083 TCAGACATGC
* * *
44753093 CCGTGTGTCTAGGCCGTGTGGCACACACAG
1 CCGTGTGTCCAGGCCATATGGCACACACAG
*
44753123 CCGTGTG-CCAGGCCATATGGCATACAC
1 CCGTGTGTCCAGGCCATATGGCACACAC
44753150 TGTCCTGTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 16 0.70
30 7 0.30
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (30 bp):
CCGTGTGTCCAGGCCATATGGCACACACAG
Found at i:44757175 original size:37 final size:37
Alignment explanation
Indices: 44757107--44757196 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
44757097 AACTATAAAG
44757107 GCCGAATGC--ACATAT-T-CACTTATACCCACCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
* *
44757140 GCCGAATGCATACATATATACACTTATATCTACCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
*
44757177 GCCGAATGCATACAAATATA
1 GCCGAATGCATACATATATA
44757197 TATCCACCTA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
33 9 0.18
35 6 0.12
36 1 0.02
37 34 0.68
ACGTcount: A:0.36, C:0.27, G:0.10, T:0.28
Consensus pattern (37 bp):
GCCGAATGCATACATATATACACTTATACCCACCTAT
Found at i:44757666 original size:41 final size:41
Alignment explanation
Indices: 44757415--44757659 Score: 409
Period size: 41 Copynumber: 6.0 Consensus size: 41
44757405 TCATATTCGG
*
44757415 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
* *
44757456 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTTAT
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
* *
44757497 ATCACCGGCACTTAGCCTTCTAGGCTTATAGCCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
* *
44757538 ATCACCGGCACTTAGCCTGTTAGGCTTATAGCCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
*
44757579 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
*
44757620 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCA
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCA
44757660 ATTCACCAAT
Statistics
Matches: 192, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 192 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (41 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
Found at i:44757927 original size:15 final size:17
Alignment explanation
Indices: 44757889--44757929 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
44757879 ATCCACATAT
44757889 ATATATATATTACACAC
1 ATATATATATTACACAC
*
44757906 ATATATATATT-CGCAC
1 ATATATATATTACACAC
44757922 AT-TATATA
1 ATATATATA
44757930 AACACCACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.26
16 6 0.26
17 11 0.48
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (17 bp):
ATATATATATTACACAC
Found at i:44757928 original size:19 final size:18
Alignment explanation
Indices: 44757882--44757929 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
44757872 TTGTTCGATC
44757882 CACATATATATATATATTA
1 CACAT-TATATATATATTA
* *
44757901 CACA-CATATATATATTCG
1 CACATTATATATATATT-A
44757919 CACATTATATA
1 CACATTATATA
44757930 AACACCACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 11 0.46
18 4 0.17
19 9 0.38
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.38
Consensus pattern (18 bp):
CACATTATATATATATTA
Found at i:44765029 original size:37 final size:37
Alignment explanation
Indices: 44764961--44765050 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
44764951 AACTATAAAG
44764961 GCCGAATGC--ACATAT-T-CACTTATACCCACCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
* *
44764994 GCCGAATGCATACATATATACACTTATATCTACCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
*
44765031 GCCGAATGCATACAAATATA
1 GCCGAATGCATACATATATA
44765051 TATCCACCTA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
33 9 0.18
35 6 0.12
36 1 0.02
37 34 0.68
ACGTcount: A:0.36, C:0.27, G:0.10, T:0.28
Consensus pattern (37 bp):
GCCGAATGCATACATATATACACTTATACCCACCTAT
Found at i:44765410 original size:82 final size:82
Alignment explanation
Indices: 44765273--44765433 Score: 304
Period size: 82 Copynumber: 2.0 Consensus size: 82
44765263 ATATTCGGAT
44765273 CACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGTT
1 CACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGTT
44765338 TATAACCTGATTCATAA
66 TATAACCTGATTCATAA
* *
44765355 CACCGGTACTTAGCCTGCTAGGCTTATAGCCTGATTCATATCACCGGCACTTAGCCTGCTAGGTT
1 CACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGTT
44765420 TATAACCTGATTCA
66 TATAACCTGATTCA
44765434 ATTCACCAAT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
82 77 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (82 bp):
CACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGTT
TATAACCTGATTCATAA
Found at i:44765440 original size:41 final size:41
Alignment explanation
Indices: 44765271--44765433 Score: 263
Period size: 41 Copynumber: 4.0 Consensus size: 41
44765261 TCATATTCGG
* *
44765271 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
*
44765312 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
* * *
44765353 AACACCGGTACTTAGCCTGCTAGGCTTATAGCCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
*
44765394 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCA
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCA
44765434 ATTCACCAAT
Statistics
Matches: 111, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 111 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (41 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAT
Found at i:44765697 original size:15 final size:17
Alignment explanation
Indices: 44765656--44765699 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
44765646 TTGTTCGATC
44765656 CACATATATATATTACA
1 CACATATATATATTACA
*
44765673 CACATATATATATT-CG
1 CACATATATATATTACA
44765689 CACAT-TATATA
1 CACATATATATA
44765700 AACACCACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 6 0.23
16 6 0.23
17 14 0.54
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.36
Consensus pattern (17 bp):
CACATATATATATTACA
Found at i:44765811 original size:43 final size:43
Alignment explanation
Indices: 44765750--44765837 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
44765740 ATTTATACTT
44765750 TTATATACATACCTATTCGAACATCACATGTATATGTATGAAA
1 TTATATACATACCTATTCGAACATCACATGTATATGTATGAAA
44765793 TTATATACATACCTATTCGAACATCACATGTATATGTATGAAA
1 TTATATACATACCTATTCGAACATCACATGTATATGTATGAAA
44765836 TT
1 TT
44765838 CACACATCAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (43 bp):
TTATATACATACCTATTCGAACATCACATGTATATGTATGAAA
Found at i:44769929 original size:34 final size:34
Alignment explanation
Indices: 44769858--44769931 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
44769848 AATGCAAGTA
* ** *
44769858 ATCAGTAGGGCCTTTGCCCAATTTCAGTAATAGT
1 ATCAGTAGGGCCTTGGCCCAATAACAGTAACAGT
*
44769892 ATCAGTGGGGCCTTGGCCC-ATAACAGTAACAGAT
1 ATCAGTAGGGCCTTGGCCCAATAACAGTAACAG-T
44769926 ATCAGT
1 ATCAGT
44769932 CATGCAGTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 10 0.29
34 24 0.71
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (34 bp):
ATCAGTAGGGCCTTGGCCCAATAACAGTAACAGT
Found at i:44770413 original size:27 final size:27
Alignment explanation
Indices: 44770391--44770531 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
44770381 AGGGGTATAA
44770391 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTT
*
44770418 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGAGGGTATTT
*
44770445 CGGTCATTTTACCCTAT-AGGGGTATTT
1 CAGTCATTTTACCCTATGA-GGGTATTT
* *
44770472 C-GATCATTTTATCCTATGGGGGTATTT
1 CAG-TCATTTTACCCTATGAGGGTATTT
* *
44770499 -TGATCATTTTACCCTATGCGGGTATTT
1 CAG-TCATTTTACCCTATGAGGGTATTT
44770526 CAGTCA
1 CAGTCA
44770532 GAAATAATTC
Statistics
Matches: 101, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (27 bp):
CAGTCATTTTACCCTATGAGGGTATTT
Found at i:44770425 original size:54 final size:53
Alignment explanation
Indices: 44770365--44770531 Score: 157
Period size: 54 Copynumber: 3.1 Consensus size: 53
44770355 AGGTCATAAT
*
44770365 AGTCATTTCATCTCCTA-GGGGTATAACAGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTT-ATCTCCTAGGGGGTAT-TCAGTCATTTTACCCTATGAGGGTATTTC
*
44770419 AGTCATTT-TAC-CCTATGGGGGTATTTCGGTCATTTTACCCTAT-AGGGGTATTTC
1 AGTCATTTAT-CTCCTA-GGGGGTA-TTCAGTCATTTTACCCTATGA-GGGTATTTC
* ** *
44770473 -GATCATTT-TATCCTATGGGGGTATTTTGATCATTTTACCCTATGCGGGTATTTC
1 AG-TCATTTATCTCCTA-GGGGGTATTCAG-TCATTTTACCCTATGAGGGTATTTC
44770527 AGTCA
1 AGTCA
44770532 GAAATAATTC
Statistics
Matches: 97, Mismatches: 6, Indels: 20
0.79 0.05 0.16
Matches are distributed among these distances:
52 5 0.05
53 6 0.06
54 84 0.87
55 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (53 bp):
AGTCATTTATCTCCTAGGGGGTATTCAGTCATTTTACCCTATGAGGGTATTTC
Found at i:44770467 original size:81 final size:81
Alignment explanation
Indices: 44770380--44770531 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
44770370 TTTCATCTCC
*
44770380 TAGGGGTATAAC-AGTCATTTTACCCTATGAGGGTATTTCAG-TCATTTTACCCTATGGGGGTAT
1 TAGGGGTATAACGA-TCATTTTACCCTATGAGGGTATTT-AGATCATTTTACCCTATGCGGGTAT
*
44770443 TTCGGTCATTTTACCCTA
64 TTCAGTCATTTTACCCTA
** * * *
44770461 TAGGGGTATTTCGATCATTTTATCCTATGGGGGTATTTTGATCATTTTACCCTATGCGGGTATTT
1 TAGGGGTATAACGATCATTTTACCCTATGAGGGTATTTAGATCATTTTACCCTATGCGGGTATTT
44770526 CAGTCA
66 CAGTCA
44770532 GAAATAATTC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 1 0.02
81 60 0.97
82 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (81 bp):
TAGGGGTATAACGATCATTTTACCCTATGAGGGTATTTAGATCATTTTACCCTATGCGGGTATTT
CAGTCATTTTACCCTA
Found at i:44771623 original size:22 final size:22
Alignment explanation
Indices: 44771598--44771657 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
44771588 GAGTCCACAG
*
44771598 AGAATGTTAGTACTAGGGACAA
1 AGAATGTCAGTACTAGGGACAA
* *
44771620 AGAATGTCA-TCACTAGGGATAG
1 AGAATGTCAGT-ACTAGGGACAA
44771642 AGAATGTCAGTACTAG
1 AGAATGTCAGTACTAG
44771658 AGGCAGTGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (22 bp):
AGAATGTCAGTACTAGGGACAA
Found at i:44775197 original size:16 final size:18
Alignment explanation
Indices: 44775178--44775214 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
44775168 TCCCAACTTC
44775178 TAAAA-TCCCCAAATC-A
1 TAAAATTCCCCAAATCTA
44775194 TAAAATTCCCCAAATCTA
1 TAAAATTCCCCAAATCTA
44775212 TAA
1 TAA
44775215 CCTCTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 10 0.53
18 4 0.21
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAAATTCCCCAAATCTA
Found at i:44775273 original size:16 final size:17
Alignment explanation
Indices: 44775233--44775275 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
44775223 ATCTTCATTG
* *
44775233 AATCCTTAAAATCTTTA
1 AATCCCTAAAATCTTGA
44775250 AATCCCTAAAAT-TTGA
1 AATCCCTAAAATCTTGA
*
44775266 AATTCCTAAA
1 AATCCCTAAA
44775276 TCATTAGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (17 bp):
AATCCCTAAAATCTTGA
Found at i:44776227 original size:33 final size:33
Alignment explanation
Indices: 44776163--44776228 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
44776153 TAACTACTAA
* *
44776163 GGAGGGTGATGTTGAAGGGGTGGAAGTTGATGG
1 GGAGGGTGATGATGAAGGGGTAGAAGTTGATGG
44776196 GGAGGGTGATGATGAAGGGGTAGAA-TCTGATGG
1 GGAGGGTGATGATGAAGGGGTAGAAGT-TGATGG
44776229 TGAAGTGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 29 0.97
ACGTcount: A:0.24, C:0.02, G:0.52, T:0.23
Consensus pattern (33 bp):
GGAGGGTGATGATGAAGGGGTAGAAGTTGATGG
Found at i:44776475 original size:51 final size:51
Alignment explanation
Indices: 44776407--44776511 Score: 183
Period size: 51 Copynumber: 2.1 Consensus size: 51
44776397 GAAGTTGCTA
* *
44776407 CTGATGAATATGTTGGTGATTTTGCAACATCAGATGGAGTGAATAATGTTG
1 CTGATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGAATAATGTTG
*
44776458 CTGATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGGATAATGTTG
1 CTGATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGAATAATGTTG
44776509 CTG
1 CTG
44776512 CTGCAAGTAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (51 bp):
CTGATGAATATGCTGGTGATTTTGCAACATCAGATGGACTGAATAATGTTG
Found at i:44782203 original size:71 final size:71
Alignment explanation
Indices: 44782089--44782480 Score: 342
Period size: 71 Copynumber: 5.5 Consensus size: 71
44782079 AGTCACATAG
* * * **
44782089 CTATTATATCAAGGCTCACAGGTGAAAAACCGTAGCCTCCAACACAGTTAACGAGAGTTAAAAAC
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTAAAAAC
* *
44782154 TCTCAG
66 TCCCAA
* * * * * * * * *
44782160 CTATCATATTAAGGCTTACAGGTGAAGAACCATAGCCTTCAACACAATTAGCTAGAGTTGAAAAC
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTAAAAAC
44782225 TCCCAA
66 TCCCAA
* * * * *
44782231 C-AGTCATATTAAGGCTCGCAAGTGAAAAACCACAGCCTCTAATACAGTTAGCGAGAGTTACAAA
1 CTA-TCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTAAAAA
*
44782295 CTCACAA
65 CTCCCAA
* * * * *
44782302 CTGTCATATTAAGGCTCGCAAATGAAAAACCACAGCCTCCAACATAGCTAGA-GAGAGTTAAAAA
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTA-ACGAGAGTTAAAAA
44782366 C-CCCTAA
65 CTCCC-AA
* * * * * * * *
44782373 CTCTCATATTAAGGCTCGCAAGTGAAAAATCGCAACCTCCAACACAATTAGCAAGAGTTACAAAA
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTA-AAAA
*
44782438 -TCCTAA
65 CTCCCAA
* * ** * *
44782444 TTTTCATATTAAGGCTCGTAGGTGAAAAACCGCAGCC
1 CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCC
44782481 CCTAAAATAA
Statistics
Matches: 263, Mismatches: 51, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
70 3 0.01
71 254 0.97
72 6 0.02
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.21
Consensus pattern (71 bp):
CTATCATATTAAGGCTCACAAGTGAAAAACCACAGCCTCCAACACAGTTAACGAGAGTTAAAAAC
TCCCAA
Found at i:44782359 original size:142 final size:141
Alignment explanation
Indices: 44782094--44782480 Score: 416
Period size: 142 Copynumber: 2.7 Consensus size: 141
44782084 CATAGCTATT
* * * * * *
44782094 ATATCAAGGCTCACAGGTGAAAAACCGTAGCCTCCAACACAGTTAACGAGAGTTAAAAACTCTCA
1 ATATTAAGGCTCGCAAGTGAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGTTACAAACTC-CA
* ** * * * * ** *
44782159 GCTATCATATTAAGGCTTACAGGTGAAGAACCATAGCCTTCAACACAATTAGCTAGAGTTGAAAA
65 ACTATCATATTAAGGCTCGCAGGTGAAAAACCACAGCCTCCAACACAACTAGAGAGAGTTAAAAA
*
44782224 CTCCC-AACAGTC
130 C-CCCTAACACTC
* * *
44782236 ATATTAAGGCTCGCAAGTGAAAAACCACAGCCTCTAATACAGTTAGCGAGAGTTACAAACTCACA
1 ATATTAAGGCTCGCAAGTGAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGTTACAAACTC-CA
* ** * *
44782301 ACTGTCATATTAAGGCTCGCAAATGAAAAACCACAGCCTCCAACATAGCTAGAGAGAGTTAAAAA
65 ACTATCATATTAAGGCTCGCAGGTGAAAAACCACAGCCTCCAACACAACTAGAGAGAGTTAAAAA
*
44782366 CCCCTAACTCTC
130 CCCCTAACACTC
* * * * *
44782378 ATATTAAGGCTCGCAAGTGAAAAATCGCAACCTCCAACACAATTAGCAAGAGTTACAAAATCCTA
1 ATATTAAGGCTCGCAAGTGAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGTTACAAACTCC-A
* * * *
44782443 ATTTTCATATTAAGGCTCGTAGGTGAAAAACCGCAGCC
65 ACTATCATATTAAGGCTCGCAGGTGAAAAACCACAGCC
44782481 CCTAAAATAA
Statistics
Matches: 202, Mismatches: 41, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
141 4 0.02
142 198 0.98
ACGTcount: A:0.39, C:0.24, G:0.16, T:0.21
Consensus pattern (141 bp):
ATATTAAGGCTCGCAAGTGAAAAACCGCAGCCTCCAACACAGTTAGCGAGAGTTACAAACTCCAA
CTATCATATTAAGGCTCGCAGGTGAAAAACCACAGCCTCCAACACAACTAGAGAGAGTTAAAAAC
CCCTAACACTC
Found at i:44786174 original size:25 final size:25
Alignment explanation
Indices: 44786130--44786177 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
44786120 CATGTTGGCT
44786130 TCTTATTTATTTTACAATTAATTAA
1 TCTTATTTATTTTACAATTAATTAA
44786155 TCTT-TTTATTGTTATC-ATTAATT
1 TCTTATTTATT-TTA-CAATTAATT
44786178 GTTATATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 6 0.29
25 14 0.67
26 1 0.05
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.60
Consensus pattern (25 bp):
TCTTATTTATTTTACAATTAATTAA
Found at i:44791565 original size:32 final size:32
Alignment explanation
Indices: 44791529--44791593 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
44791519 GATCATTATG
44791529 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
1 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
44791561 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
1 ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
44791593 A
1 A
44791594 CCTCCTTTCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.17, C:0.09, G:0.18, T:0.55
Consensus pattern (32 bp):
ATAGTCATTTTGGGATGTTTTCTATCTTTGTT
Found at i:44791849 original size:30 final size:29
Alignment explanation
Indices: 44791815--44791897 Score: 85
Period size: 30 Copynumber: 2.8 Consensus size: 29
44791805 ATGAAAAATT
* * **
44791815 TATAAATAAATACTAATAATTTTATTTAAA
1 TATAAATAAATATTAATAATTATAAAT-AA
* * *
44791845 TATAATTAAATTTTAATTAATTATAAATAT
1 TATAAATAAATATTAA-TAATTATAAATAA
44791875 TATAAATAAATATTAATAATTAT
1 TATAAATAAATATTAATAATTAT
44791898 GAGATCTAGA
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
29 7 0.16
30 28 0.65
31 8 0.19
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (29 bp):
TATAAATAAATATTAATAATTATAAATAA
Found at i:44799167 original size:44 final size:44
Alignment explanation
Indices: 44799060--44799576 Score: 357
Period size: 44 Copynumber: 11.7 Consensus size: 44
44799050 TCATTCTAAC
* * * *
44799060 CCACTGCAACTTCTGAGG-TATATGATTTGTTA-CTTCAATCTACT
1 CCACTGCAACTTC-AAGGAGATAAGATTTG-TAGCTTCAATCTGCT
* * * *
44799104 CCACTACAACTTTAGGGAGACGAAG-TTTGTAGCTTCAATCTGCT
1 CCACTGCAACTTCAAGGAGA-TAAGATTTGTAGCTTCAATCTGCT
* * *
44799148 CCACTGCAACTTCAAGGAGATAAGATTTGTGACTTGATTTAATCCGAC-
1 CCACTGCAACTTCAAGGAGATAAGATTTGT-A---GCTTCAATCTG-CT
* * * * * *
44799196 CCACTGTAACTTCCGAGG-TATAGGATTTGTCGCTTTAATCTGCT
1 CCACTGCAACTT-CAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * *
44799240 CCACTGTAACTTCAGGGGGATGAGATTTGTAACTTCAATATGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* *
44799284 CCACTGCAACTTCAATGAGATAAGATTTGTAACTTCAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * *
44799328 ACACTACAACTTTAGGGAGATAA-AGTTTGTAACTTCAATATGCT
1 CCACTGCAACTTCAAGGAGATAAGA-TTTGTAGCTTCAATCTGCT
* * * * *
44799372 CCACTCCAACATCATGGAGATAAGGTTTGTAGCTTTAATCTGCT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* * * * * *
44799416 CTAC-ACAACTTC-AGAGAGATAAGATTTGTGGTTTTAATCTACT
1 CCACTGCAACTTCAAG-GAGATAAGATTTGTAGCTTCAATCTGCT
* * ** * *
44799459 CTACTGCAACTTCAAAGAGATAAGATTCACTATCTTCAATCCGCT
1 CCACTGCAACTTCAAGGAGATAAGATT-TGTAGCTTCAATCTGCT
* * * * * * *
44799504 CCATTGTAACTTCAGGGAGATAAGATTTGTTGCTTGAATTTACT
1 CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
* *
44799548 CCACTGCAACTTTAGGGAGATAAGATTTG
1 CCACTGCAACTTCAAGGAGATAAGATTTG
44799577 GCACGATAAC
Statistics
Matches: 369, Mismatches: 86, Indels: 36
0.75 0.18 0.07
Matches are distributed among these distances:
42 1 0.00
43 46 0.12
44 253 0.69
45 35 0.09
48 29 0.08
49 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCT
Found at i:44799304 original size:136 final size:136
Alignment explanation
Indices: 44799058--44799318 Score: 362
Period size: 136 Copynumber: 1.9 Consensus size: 136
44799048 CTTCATTCTA
* * * *
44799058 ACCCACTGCAACTTCTGAGGTATATGATTTGTTACTTCAATCTACTCCACTACAACTTTAGGGAG
1 ACCCACTGCAACTTCCGAGGTATAGGATTTGTCACTTCAATCTACTCCACTACAACTTCAGGGAG
* * *
44799123 ACGAAGTTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTGACTTGATTT
66 ACGAAGTTTGTAACTTCAATATGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGATTT
44799188 AATCCG
131 AATCCG
* * * * ** *
44799194 ACCCACTGTAACTTCCGAGGTATAGGATTTGTCGCTTTAATCTGCTCCACTGTAACTTCAGGGGG
1 ACCCACTGCAACTTCCGAGGTATAGGATTTGTCACTTCAATCTACTCCACTACAACTTCAGGGAG
* *
44799259 ATG-AGATTTGTAACTTCAATATGCTCCACTGCAACTTCAATGAGATAAGATTTGTAACTT
66 ACGAAG-TTTGTAACTTCAATATGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTT
44799319 CAATCTGCTA
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
135 2 0.02
136 106 0.98
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (136 bp):
ACCCACTGCAACTTCCGAGGTATAGGATTTGTCACTTCAATCTACTCCACTACAACTTCAGGGAG
ACGAAGTTTGTAACTTCAATATGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGATTT
AATCCG
Found at i:44802316 original size:41 final size:41
Alignment explanation
Indices: 44802233--44802321 Score: 106
Period size: 41 Copynumber: 2.2 Consensus size: 41
44802223 ACTGGCACTT
** * * **
44802233 AGCCTGCTAGACATAAAGTCTGAAATGTTTCACCGGTGTCA
1 AGCCTGCTAGACATAAAGTCTGAAACATATCACCAGCATCA
* *
44802274 AGCCTGCTAGACTTAAAGTCTGAAACATATCACTAGCATCA
1 AGCCTGCTAGACATAAAGTCTGAAACATATCACCAGCATCA
44802315 AGCCTGC
1 AGCCTGC
44802322 AAGGCACTGA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGTCTGAAACATATCACCAGCATCA
Found at i:44810635 original size:40 final size:40
Alignment explanation
Indices: 44810580--44810856 Score: 446
Period size: 40 Copynumber: 6.9 Consensus size: 40
44810570 GCATGAGCAT
44810580 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
44810620 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTACGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
44810660 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
44810700 TTGATATATCCGGGCTAAAACTCGAAGGCATTTGTGCTAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
44810740 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
44810780 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
44810820 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
44810857 TTGCGGTTAT
Statistics
Matches: 218, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:44819621 original size:21 final size:20
Alignment explanation
Indices: 44819597--44819649 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
44819587 ATAAAGCTTT
44819597 TAAAAAAATTTAAAAAATATA
1 TAAAAAAATTTAAAAAAT-TA
* *
44819618 TAAAGAAAGTTAAAAAATTA
1 TAAAAAAATTTAAAAAATTA
*
44819638 AAAAAATAATTT
1 TAAAAA-AATTT
44819650 GCGTGACATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (20 bp):
TAAAAAAATTTAAAAAATTA
Found at i:44821911 original size:17 final size:17
Alignment explanation
Indices: 44821891--44821924 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
44821881 TTTATTAATT
44821891 TATATTTT-TAAATTTTA
1 TATATTTTCT-AATTTTA
44821908 TATATTTTCTAATTTTA
1 TATATTTTCTAATTTTA
44821925 AAAAATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.94
18 1 0.06
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TATATTTTCTAATTTTA
Found at i:44835384 original size:28 final size:28
Alignment explanation
Indices: 44835344--44835403 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
44835334 ATATATATAT
44835344 ATACACGAGTTGCGTACTCTATTCAATC
1 ATACACGAGTTGCGTACTCTATTCAATC
44835372 ATACACGAGTTGCGTACTCTATTCAATC
1 ATACACGAGTTGCGTACTCTATTCAATC
44835400 ATAC
1 ATAC
44835404 GAGATCACTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (28 bp):
ATACACGAGTTGCGTACTCTATTCAATC
Found at i:44838907 original size:3 final size:3
Alignment explanation
Indices: 44838899--44838997 Score: 65
Period size: 3 Copynumber: 31.0 Consensus size: 3
44838889 TACATAGTGG
* * * *
44838899 TAA TAA TAA CTAA GAA TAA TAA TAAA TAA TCA TACA TTAA TAA -AC GAA
1 TAA TAA TAA -TAA TAA TAA TAA T-AA TAA TAA TA-A -TAA TAA TAA TAA
* * *
44838947 TAA TAG TAG TAAA TAAA TAAA TAA GAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA T-AA T-AA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
44838995 TAA
1 TAA
44838998 ATTTATTTAC
Statistics
Matches: 79, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
2 1 0.01
3 58 0.73
4 18 0.23
5 2 0.03
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:44840630 original size:129 final size:129
Alignment explanation
Indices: 44840423--44840947 Score: 689
Period size: 129 Copynumber: 4.1 Consensus size: 129
44840413 TGTAACTTTA
* * * * * * *
44840423 AAGATAAGTCT-GATGCAATCTACTCTACTGCAACTTCAGAAAGATAAGATCTG-GACCTTTTAA
1 AAGATAAGACTGGATGCGATCTGCTCTACTACAACGTCAGAGAGATAAGATCTGTG--GTTTTAA
* * *
44840486 TCCACTCCACTGCAACTTTAGGGAGATAGGATTTATTTCTTCTGTCTGCTCTACTGCAACTTTAG
64 TCCACTCCACTGCAACTTCAGGGAGATAGGATTTATTTCTTCTGTCTGCTCCACTGCAACTTCAG
44840551 G
129 G
*
44840552 AAGATAAGACTGGATGCGATCTGCTCTACTACAACGTCAGATAGATAAGATCTGTGGTTTTAATC
1 AAGATAAGACTGGATGCGATCTGCTCTACTACAACGTCAGAGAGATAAGATCTGTGGTTTTAATC
* *
44840617 CGCTCCACTGCAACTTCAGGGAGATAGGATTTATTTCTTCTGTCTGCTCCACTGTAACTTCAGG
66 CACTCCACTGCAACTTCAGGGAGATAGGATTTATTTCTTCTGTCTGCTCCACTGCAACTTCAGG
* * *
44840681 GAGATAAGACTGGGTGCGATCTGCTCTACTACAATGTCAGAGAGATAAGATCTGTGGTTTTAATC
1 AAGATAAGACTGGATGCGATCTGCTCTACTACAACGTCAGAGAGATAAGATCTGTGGTTTTAATC
*
44840746 CACTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTGCAACTTCAGG
66 CACTCCACTGCAACTTCAGGGAGATAGGATTTATTTCTTCTGTCTGCTCCACTGCAACTTCAGG
* * * * * * *
44840810 GAGATAAGACCGGATGCGATTTGCTCAACTACAATGTCAGAGAGATAAGATCTATGGTCTTAATC
1 AAGATAAGACTGGATGCGATCTGCTCTACTACAACGTCAGAGAGATAAGATCTGTGGTTTTAATC
* * ** * * * *
44840875 CAATCCATTGCAACTTCAAAGAGATAAGA-TTATTGGCTT-TAATCTGTTCCACTGCAACTTCAG
66 CACTCCACTGCAACTTCAGGGAGATAGGATTTATT-TCTTCT-GTCTGCTCCACTGCAACTTCAG
44840938 G
129 G
*
44840939 GAGATAAGA
1 AAGATAAGA
44840948 ATTATAGCTG
Statistics
Matches: 358, Mismatches: 34, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
128 5 0.01
129 315 0.88
130 37 0.10
131 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (129 bp):
AAGATAAGACTGGATGCGATCTGCTCTACTACAACGTCAGAGAGATAAGATCTGTGGTTTTAATC
CACTCCACTGCAACTTCAGGGAGATAGGATTTATTTCTTCTGTCTGCTCCACTGCAACTTCAGG
Found at i:44840666 original size:44 final size:44
Alignment explanation
Indices: 44840490--44840818 Score: 164
Period size: 44 Copynumber: 7.6 Consensus size: 44
44840480 TTTTAATCCA
* *
44840490 CTCCACTGCAACTTTAGGGAGATAGGATTTATTTCTTCTGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATTTCTTCTGTCTG
* * * ** *
44840534 CTCTACTGCAACTTTAGGAAGATAAGACTGGA----TGC-GATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTTATTTCTTCTG-TCTG
* * * ** ** ** *
44840575 CTCTACTACAACGTCAGATAGATAAGATCTGTGGTT-TT-AATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGAT-T-TATTTCTTCTGTCTG
*
44840619 CTCCACTGCAACTTCAGGGAGATAGGATTTATTTCTTCTGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATTTCTTCTGTCTG
* * *** *
44840663 CTCCACTGTAACTTCAGGGAGATAAGA---CTGGGTGC-GATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATTTCTTCTG-TCTG
* * * ** ** **
44840704 CTCTACTACAA-TGTCAGAGAGATAAGATCTGTGGTT-TT-AATCCA
1 CTCCACTGCAACT-TCAGGGAGATAAGAT-T-TATTTCTTCTGTCTG
* *
44840748 CTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTCTGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTATTTCTTCTGTCTG
44840792 CTCCACTGCAACTTCAGGGAGATAAGA
1 CTCCACTGCAACTTCAGGGAGATAAGA
44840819 CCGGATGCGA
Statistics
Matches: 205, Mismatches: 59, Indels: 42
0.67 0.19 0.14
Matches are distributed among these distances:
40 4 0.02
41 56 0.27
42 5 0.02
43 6 0.03
44 129 0.63
45 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTATTTCTTCTGTCTG
Found at i:44840917 original size:44 final size:44
Alignment explanation
Indices: 44840850--44840952 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 44
44840840 ACAATGTCAG
*
44840850 AGAGATAAGATCTA-TGGTCTTAATCCAATCCATTGCAACTTCAA
1 AGAGATAAGAT-TATTGGTCTTAATCCAATCCACTGCAACTTCAA
*** *
44840894 AGAGATAAGATTATTGG-CTTTAATCTGTTCCACTGCAACTTCAG
1 AGAGATAAGATTATTGGTC-TTAATCCAATCCACTGCAACTTCAA
*
44840938 GGAGATAAGAATTAT
1 AGAGATAAG-ATTAT
44840953 AGCTGCAACT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
43 3 0.06
44 42 0.84
45 5 0.10
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (44 bp):
AGAGATAAGATTATTGGTCTTAATCCAATCCACTGCAACTTCAA
Found at i:44841478 original size:100 final size:100
Alignment explanation
Indices: 44841359--44841587 Score: 282
Period size: 100 Copynumber: 2.3 Consensus size: 100
44841349 AACGCCAGGA
** * *
44841359 AAATAAGATTCACCATTGTGGGTTCAATCTATTTAATTGCAATGTCGGGGAAACAAGATCC-CTA
1 AAATAAGATTCACTGTTGTGGCTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATCCGCTA
* *
44841423 TCGTGATTTCAATCTGTTCCACTACACCACCAAGG
66 TCGTGACTTCAATCTATTCCACTACACCACCAAGG
* * * * *
44841458 AAGGTAAGATTCACTGTTGTGGCTTTAATCTATTTAACTGTAATGTTGGGGAAACCAGATCCGCT
1 AA-ATAAGATTCACTGTTGTGGCTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATCCGCT
* * * *
44841523 GTCGTGGCTTCAATCTATTCCACTACACCGCCAGGG
65 ATCGTGACTTCAATCTATTCCACTACACCACCAAGG
*
44841559 AAAAAAGATTCA-TCGTTGTGGCTTCAATC
1 AAATAAGATTCACT-GTTGTGGCTTCAATC
44841588 CATTCCACTA
Statistics
Matches: 109, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
99 3 0.03
100 72 0.66
101 34 0.31
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (100 bp):
AAATAAGATTCACTGTTGTGGCTTCAATCTATTTAACTGCAATGTCGGGGAAACAAGATCCGCTA
TCGTGACTTCAATCTATTCCACTACACCACCAAGG
Found at i:44846860 original size:3 final size:3
Alignment explanation
Indices: 44846852--44846957 Score: 61
Period size: 3 Copynumber: 33.3 Consensus size: 3
44846842 TTACATAGTG
* * * **
44846852 ATA ATA ATA ACTA AGA ATA ATA ATCA ATG ATC ATA CATTA ATA A-A CGA
1 ATA ATA ATA A-TA ATA ATA ATA AT-A ATA ATA ATA -A-TA ATA ATA ATA
* * * *
44846900 ATA ATA GTA GTAA ATAA ATAA ATA AGA GTA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA AT-A AT-A AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
44846948 ATA ATA ATA A
1 ATA ATA ATA A
44846958 ATTTATTTAC
Statistics
Matches: 83, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
2 1 0.01
3 62 0.75
4 18 0.22
5 2 0.02
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:44851245 original size:29 final size:30
Alignment explanation
Indices: 44851213--44851271 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
44851203 TATGATTTAA
*
44851213 TGTGCAATTGTATATAT-AAATTTTAATTT
1 TGTGCAATTGTATACATGAAATTTTAATTT
* * *
44851242 TGTGTAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAATTTTAATTT
44851272 GATCCAATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAATTTTAATTT
Found at i:44851272 original size:29 final size:29
Alignment explanation
Indices: 44851191--44851271 Score: 90
Period size: 31 Copynumber: 2.7 Consensus size: 29
44851181 AATTTTAAAA
*
44851191 TTATACATAAATTATGATTTAATGTGCAATT
1 TTATACATAAATTTTGATTT--TGTGCAATT
* * * *
44851222 GTATATATAAATTTTAATTTTGTGTAATT
1 TTATACATAAATTTTGATTTTGTGCAATT
44851251 TTATACATGAAATTTTGATTT
1 TTATACAT-AAATTTTGATTT
44851272 GATCCAATTC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 14 0.34
30 11 0.27
31 16 0.39
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.51
Consensus pattern (29 bp):
TTATACATAAATTTTGATTTTGTGCAATT
Found at i:44861358 original size:40 final size:40
Alignment explanation
Indices: 44861274--44861376 Score: 100
Period size: 40 Copynumber: 2.6 Consensus size: 40
44861264 GGAAAAAATG
* * ** * **
44861274 CCGCTATAGATCGAGCT-TTAGTGGCGCTTTTTGGAAAATG
1 CCGCTATAGATCGA-CTATTAGCGACGCTACTTGAAAAACA
44861314 CCGCTATAGATCGACTATTAGCGACGCTACTTGAAAAACA
1 CCGCTATAGATCGACTATTAGCGACGCTACTTGAAAAACA
* * *
44861354 CCGCTATAGGTAGACAATTAGCG
1 CCGCTATAGATCGACTATTAGCG
44861377 GCACTTTCTG
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.04
40 50 0.96
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGCTATAGATCGACTATTAGCGACGCTACTTGAAAAACA
Found at i:44861502 original size:40 final size:39
Alignment explanation
Indices: 44861444--44861552 Score: 141
Period size: 40 Copynumber: 2.7 Consensus size: 39
44861434 GCTTTAGTGG
* *
44861444 CATTAGCGACGCTTTTTGAAAAACACCGCTA-ATGGTCGA-
1 CATTAGCGGCGC-TTTTGAAAAACGCCGCTACA-GGTCGAC
44861483 CATTTAGCGGCGCTCTTTGAAAAACGCCGCTACAGGTCGAC
1 CA-TTAGCGGCGCT-TTTGAAAAACGCCGCTACAGGTCGAC
44861524 CATTAGCGGCGCTTTTGGAAAAACGCCGC
1 CATTAGCGGCGCTTTT-GAAAAACGCCGC
44861553 AAAAGACGTT
Statistics
Matches: 63, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
39 6 0.10
40 54 0.86
41 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (39 bp):
CATTAGCGGCGCTTTTGAAAAACGCCGCTACAGGTCGAC
Found at i:44861877 original size:7 final size:7
Alignment explanation
Indices: 44861856--44862044 Score: 89
Period size: 7 Copynumber: 26.4 Consensus size: 7
44861846 TTAATTATCA
*
44861856 TTATAGT
1 TTATGGT
*
44861863 TTAGGGT
1 TTATGGT
44861870 TTATGGT
1 TTATGGT
*
44861877 TTAGGGT
1 TTATGGT
* **
44861884 ATACAGT
1 TTATGGT
*
44861891 TTAGGGT
1 TTATGGT
*
44861898 TTAGGGT
1 TTATGGT
*
44861905 TTAGGAGT
1 TTATG-GT
44861913 TACTAT--T
1 T--TATGGT
*
44861920 TTAAGGT
1 TTATGGT
*
44861927 TTATGGA
1 TTATGGT
44861934 TTATGGGT
1 TTAT-GGT
* *
44861942 TTAGGGA
1 TTATGGT
*
44861949 TAATGGT
1 TTATGGT
44861956 TTATGGT
1 TTATGGT
*
44861963 TTAGGGT
1 TTATGGT
*
44861970 TTAGGGT
1 TTATGGT
*
44861977 TTAAGAGT
1 TTATG-GT
44861985 TAGTAT--T
1 T--TATGGT
*
44861992 TTAAGGT
1 TTATGGT
*
44861999 TTATGGG
1 TTATGGT
44862006 TTATGGGT
1 TTAT-GGT
* *
44862014 TTAGGGA
1 TTATGGT
44862021 TTATGGT
1 TTATGGT
44862028 TTATGGT
1 TTATGGT
44862035 TTATGGT
1 TTATGGT
44862042 TTA
1 TTA
44862045 AGGGTTGGGG
Statistics
Matches: 138, Mismatches: 32, Indels: 24
0.71 0.16 0.12
Matches are distributed among these distances:
5 4 0.03
7 114 0.83
8 16 0.12
10 4 0.03
ACGTcount: A:0.22, C:0.01, G:0.31, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:44861878 original size:14 final size:14
Alignment explanation
Indices: 44861856--44862094 Score: 117
Period size: 14 Copynumber: 16.7 Consensus size: 14
44861846 TTAATTATCA
*
44861856 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
44861870 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* **
44861884 ATACAGTTTAGGGT
1 TTATGGTTTAGGGT
*
44861898 TTAGGGTTTAGGAGT
1 TTATGGTTTAGG-GT
*
44861913 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
*
44861927 TTATGGATTATGGGT
1 TTATGGTTTA-GGGT
* * * *
44861942 TTAGGGATAATGGT
1 TTATGGTTTAGGGT
44861956 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
44861970 TTAGGGTTTAAGAGT
1 TTATGGTTT-AGGGT
*
44861985 TAGTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
*
44861999 TTATGGGTTATGGGT
1 TTATGGTTTA-GGGT
* * *
44862014 TTAGGGATTATGGT
1 TTATGGTTTAGGGT
*
44862028 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
* * *
44862042 TTAAGGGTTGGGGT
1 TTATGGTTTAGGGT
* * *
44862056 TTAAGTTTTAAGGT
1 TTATGGTTTAGGGT
* *
44862070 TTAGGGGTTAGGGGT
1 TTATGGTTTA-GGGT
*
44862085 TTAAGGTTTA
1 TTATGGTTTA
44862095 TATTTTATGA
Statistics
Matches: 168, Mismatches: 44, Indels: 25
0.71 0.19 0.11
Matches are distributed among these distances:
12 6 0.04
14 109 0.65
15 49 0.29
17 4 0.02
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:44861985 original size:72 final size:72
Alignment explanation
Indices: 44861889--44862050 Score: 270
Period size: 72 Copynumber: 2.2 Consensus size: 72
44861879 AGGGTATACA
*
44861889 GTTTAGGGTTTAGGGTTTAGGAGTTACTATTTTAAGGTTTATGGATTATGGGTTTAGGGATAATG
1 GTTTAGGGTTTAGGGTTTAAGAGTTACTATTTTAAGGTTTATGGATTATGGGTTTAGGGATAATG
44861954 GTTTATG
66 GTTTATG
* * *
44861961 GTTTAGGGTTTAGGGTTTAAGAGTTAGTATTTTAAGGTTTATGGGTTATGGGTTTAGGGATTATG
1 GTTTAGGGTTTAGGGTTTAAGAGTTACTATTTTAAGGTTTATGGATTATGGGTTTAGGGATAATG
44862026 GTTTATG
66 GTTTATG
*
44862033 GTTTATGGTTTAAGGGTT
1 GTTTAGGGTTT-AGGGTT
44862051 GGGGTTTAAG
Statistics
Matches: 84, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
72 78 0.93
73 6 0.07
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.46
Consensus pattern (72 bp):
GTTTAGGGTTTAGGGTTTAAGAGTTACTATTTTAAGGTTTATGGATTATGGGTTTAGGGATAATG
GTTTATG
Found at i:44862067 original size:7 final size:7
Alignment explanation
Indices: 44861991--44862094 Score: 55
Period size: 7 Copynumber: 14.6 Consensus size: 7
44861981 GAGTTAGTAT
44861991 TTTAAGG
1 TTTAAGG
*
44861998 TTTATGG
1 TTTAAGG
* *
44862005 GTTATGGG
1 TTTA-AGG
*
44862013 TTTAGGG
1 TTTAAGG
* *
44862020 ATTATGG
1 TTTAAGG
*
44862027 TTTATGG
1 TTTAAGG
*
44862034 TTTATGG
1 TTTAAGG
44862041 TTTAAGG
1 TTTAAGG
* **
44862048 GTTGGGG
1 TTTAAGG
*
44862055 TTTAAGT
1 TTTAAGG
44862062 TTTAAGG
1 TTTAAGG
*
44862069 TTTAGGG
1 TTTAAGG
* *
44862076 GTTAGGGG
1 TTTA-AGG
44862084 TTTAAGG
1 TTTAAGG
44862091 TTTA
1 TTTA
44862095 TATTTTATGA
Statistics
Matches: 75, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
7 64 0.85
8 11 0.15
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.45
Consensus pattern (7 bp):
TTTAAGG
Found at i:44863579 original size:20 final size:20
Alignment explanation
Indices: 44863542--44863580 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
44863532 AAAAATGGAT
* *
44863542 ATGGGTGTTCATGGTTGTTC
1 ATGGCTGTTCATAGTTGTTC
*
44863562 ATGGCTGTTCATATTTGTT
1 ATGGCTGTTCATAGTTGTT
44863581 TCCATAATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.28, T:0.49
Consensus pattern (20 bp):
ATGGCTGTTCATAGTTGTTC
Found at i:44868271 original size:43 final size:43
Alignment explanation
Indices: 44868219--44868614 Score: 541
Period size: 43 Copynumber: 9.3 Consensus size: 43
44868209 GAACGGTACT
* * *
44868219 TTTAGCGGCGTTTGTGAAAAAAACGCCGCTAAAGGTCATGTTA
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
44868262 TTTAACGGCGTTTGTGCTAAAAGCGCCGTTAAAGGTCATGTTT
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* **
44868305 TTTAGCGGCGTTTGTGATAAAAGTGTTGCTAAA-G--ATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
*
44868345 TTTAGCGGCGTTTGTGATAAAA-AGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* * * *
44868387 TTTAGCAGCGTTTGTGCTAAAAGCACCACTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
*
44868430 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTG
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
* *
44868473 TTTAGCGGCGTTTGTAATAAAAGCGCCACTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
*
44868516 TTTAGCGGTGTTTGTGATGAAAA-CGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGAT-AAAAGCGCCGCTAAAGGTCATGTTC
* * * *
44868559 TTTAGCGACGATTGTGACAAAAGTGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
44868602 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
44868615 ATGTGAAAAA
Statistics
Matches: 308, Mismatches: 39, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
39 7 0.02
40 28 0.09
42 31 0.10
43 238 0.77
44 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTC
Found at i:44879254 original size:28 final size:28
Alignment explanation
Indices: 44879214--44879270 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
44879204 ACATCTGACC
*
44879214 AATTTCTTTCTTTTGGGAAATTCAACTA
1 AATTTCTTCCTTTTGGGAAATTCAACTA
44879242 AATTTCTTCCTTTTGGGAAATTCAACTA
1 AATTTCTTCCTTTTGGGAAATTCAACTA
44879270 A
1 A
44879271 CTCTCATGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.44
Consensus pattern (28 bp):
AATTTCTTCCTTTTGGGAAATTCAACTA
Found at i:44879481 original size:16 final size:16
Alignment explanation
Indices: 44879460--44879498 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
44879450 GTTTGGTTCA
44879460 CTGTAATGGAAAAGAG
1 CTGTAATGGAAAAGAG
*
44879476 CTGTAATGGAATAGAG
1 CTGTAATGGAAAAGAG
44879492 CTGTAAT
1 CTGTAAT
44879499 AGTAATTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (16 bp):
CTGTAATGGAAAAGAG
Found at i:44879532 original size:45 final size:44
Alignment explanation
Indices: 44879481--44879568 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 44
44879471 AAGAGCTGTA
*
44879481 ATGGAATAGAGCTGTAATAGTAATTCAAT-TGTTTGGTTGAATGGG
1 ATGGAATAGAGCTATAATAGT-ATT-AATGTGTTTGGTTGAATGGG
*
44879526 ATGGAATAGAGCTATAATAGTATTATTGTGTTTGGTTGAATGG
1 ATGGAATAGAGCTATAATAGTATTAATGTGTTTGGTTGAATGG
44879569 AATGATATTG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
43 2 0.05
44 18 0.45
45 20 0.50
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.38
Consensus pattern (44 bp):
ATGGAATAGAGCTATAATAGTATTAATGTGTTTGGTTGAATGGG
Found at i:44879797 original size:57 final size:56
Alignment explanation
Indices: 44879681--44879814 Score: 144
Period size: 57 Copynumber: 2.3 Consensus size: 56
44879671 AATAAGATTA
* * *
44879681 TTAATAAAAATAATAAATAATTTAATCATATTTTAACATAATTAGTATTAAATATAAT
1 TTAAT-AAAATAATATATAATTTAATAAAATTTTAACATAATTAGTATT-AATATAAT
* * *
44879739 TTAATAAAATAATATATAATTTAATAAAATTCTTAATATAATTATTCTT-ATATGAAT
1 TTAATAAAATAATATATAATTTAATAAAATT-TTAACATAATTAGTATTAATAT-AAT
* *
44879796 TTACTAAAATCATAATATA
1 TTAATAAAATAAT-ATATA
44879815 TAATACTATA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
56 4 0.06
57 37 0.57
58 24 0.37
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (56 bp):
TTAATAAAATAATATATAATTTAATAAAATTTTAACATAATTAGTATTAATATAAT
Found at i:44880433 original size:46 final size:46
Alignment explanation
Indices: 44880383--44880473 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
44880373 TTTTGTAGTG
* *
44880383 TTAATTATAATTTTTAATCAAACAATATATGTAATATAAAATATTT
1 TTAATTATAATTTTCAATCAAACAATATAAGTAATATAAAATATTT
*
44880429 TTAATTATAATTTTCAATCATACAATATAAGTAATATAAAATATT
1 TTAATTATAATTTTCAATCAAACAATATAAGTAATATAAAATATT
44880474 GTTTGAAGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.44
Consensus pattern (46 bp):
TTAATTATAATTTTCAATCAAACAATATAAGTAATATAAAATATTT
Found at i:44881723 original size:31 final size:31
Alignment explanation
Indices: 44881630--44881725 Score: 156
Period size: 31 Copynumber: 3.1 Consensus size: 31
44881620 GGCAAATTAC
*
44881630 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
*
44881661 AAGAGTAATTGAATCCTACTAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
*
44881693 AAGAGTGATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
44881724 AA
1 AA
44881726 ATTATCTAAG
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
31 32 0.53
32 28 0.47
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:44887322 original size:42 final size:43
Alignment explanation
Indices: 44887251--44887367 Score: 209
Period size: 43 Copynumber: 2.7 Consensus size: 43
44887241 GAGAGGTAGG
*
44887251 CAACTTTTTTTTTGCGCTGTTTACTTTTTTTTCAGATTTTTCT
1 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTCAGATTTTTCT
*
44887294 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTTAGATTTTTCT
1 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTCAGATTTTTCT
44887337 CAAC-TTTTTTTTGCGCTGTTTGCTTTTTTTT
1 CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTT
44887368 ATTAACTAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
42 27 0.38
43 45 0.62
ACGTcount: A:0.09, C:0.15, G:0.11, T:0.64
Consensus pattern (43 bp):
CAACTTTTTTTTTGCGCTGTTTGCTTTTTTTTCAGATTTTTCT
Found at i:44887984 original size:31 final size:31
Alignment explanation
Indices: 44887891--44887986 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
44887881 GGCAAATTAC
*
44887891 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
44887922 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
44887954 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
44887985 AA
1 AA
44887987 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:44888610 original size:13 final size:13
Alignment explanation
Indices: 44888592--44888622 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
44888582 AGAAATATAG
44888592 CAGAATATTTTAT
1 CAGAATATTTTAT
44888605 CAGAATATTTTAT
1 CAGAATATTTTAT
44888618 CAGAA
1 CAGAA
44888623 CATCTGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (13 bp):
CAGAATATTTTAT
Found at i:44892814 original size:13 final size:13
Alignment explanation
Indices: 44892796--44892834 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
44892786 ATGAAAAAGA
44892796 AAGAAAAATAAAT
1 AAGAAAAATAAAT
*
44892809 AAGAAAAAGAAAAT
1 AAGAAAAA-TAAAT
44892823 AAGAGAAAATAA
1 AAGA-AAAATAA
44892835 GGGAAAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 8 0.36
14 10 0.45
15 4 0.18
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (13 bp):
AAGAAAAATAAAT
Found at i:44895109 original size:75 final size:75
Alignment explanation
Indices: 44894986--44895135 Score: 282
Period size: 75 Copynumber: 2.0 Consensus size: 75
44894976 AGAGTAATAG
*
44894986 TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAATCTAGTGTGGAGGAGAATTCGTCT
1 TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAATCTAGTGTGGAGGAGAATTCCTCT
44895051 GATGCTGATT
66 GATGCTGATT
*
44895061 TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAGTCTAGTGTGGAGGAGAATTCCTCT
1 TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAATCTAGTGTGGAGGAGAATTCCTCT
44895126 GATGCTGATT
66 GATGCTGATT
44895136 CCTCAATGAT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (75 bp):
TGGAGAATAACAATTCAGCATCATCACCTACAGAAACCAAATCTAGTGTGGAGGAGAATTCCTCT
GATGCTGATT
Found at i:44898265 original size:12 final size:12
Alignment explanation
Indices: 44898248--44898273 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
44898238 CAAAACAGGC
44898248 TTTTAGCGGCGT
1 TTTTAGCGGCGT
44898260 TTTTAGCGGCGT
1 TTTTAGCGGCGT
44898272 TT
1 TT
44898274 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:44898307 original size:41 final size:38
Alignment explanation
Indices: 44898262--44898393 Score: 138
Period size: 40 Copynumber: 3.3 Consensus size: 38
44898252 AGCGGCGTTT
*
44898262 TTAGCGGCGTTTGGATAAAAAACGCCGCTAAAAATCAAGCA
1 TTAGCGGCGTTT--ATAAAAAACGCCACTAAAAAT-AAGCA
* * * *
44898303 TTAGCGGCGCTTCTAATAAAACGCCACTAAAGATAGAGTA
1 TTAGCGGCGTTTATAA-AAAACGCCACTAAAAATA-AGCA
* *
44898343 TTAGCGGCGCTTTTTAAAAAACGCCACTAAAAATGAGCA
1 TTAGCGGCG-TTTATAAAAAACGCCACTAAAAATAAGCA
*
44898382 TTAGTGGCGTTT
1 TTAGCGGCGTTT
44898394 TCCACAAAGC
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
38 3 0.04
39 15 0.19
40 43 0.56
41 16 0.21
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (38 bp):
TTAGCGGCGTTTATAAAAAACGCCACTAAAAATAAGCA
Found at i:44898333 original size:40 final size:39
Alignment explanation
Indices: 44898277--44898395 Score: 141
Period size: 40 Copynumber: 3.0 Consensus size: 39
44898267 GGCGTTTGGA
*
44898277 TAAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGC-TTC
1 TAAAAAACGCCACTAAAAAT-AAGCATTAGCGGCGCTTTC
* * *
44898316 TAATAAAACGCCACTAAAGATAGAGTATTAGCGGCGCTTTT
1 TAA-AAAACGCCACTAAAAATA-AGCATTAGCGGCGCTTTC
* * *
44898357 TAAAAAACGCCACTAAAAATGAGCATTAGTGGCGTTTTC
1 TAAAAAACGCCACTAAAAATAAGCATTAGCGGCGCTTTC
44898396 CACAAAGCGC
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 18 0.27
40 44 0.66
41 5 0.07
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (39 bp):
TAAAAAACGCCACTAAAAATAAGCATTAGCGGCGCTTTC
Found at i:44898523 original size:41 final size:41
Alignment explanation
Indices: 44898450--44898778 Score: 392
Period size: 41 Copynumber: 8.0 Consensus size: 41
44898440 AAGTTTTTGG
* * * * * *
44898450 GGGCATTAGCGGCGTTTTTTAAAAATCACCGCTAATGCTAA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* *
44898491 GGGCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAAAGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* **
44898532 GGTCTTTAGCGGTATTTTTGAAGAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* *
44898573 GGGCTTTAGCGGCGTTTCTGAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
** *
44898614 GTTCTTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCTA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC-A
* * * *
44898656 --TCTTTAGCGGTGTTTATGAAGAAGCGTCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
* * *
44898695 GGGCTTTAGCGGCGTTTTTTGGAGAAGCGCCACTAATGCTTA
1 GGGCTTTAGCGGCG-TTTTTGAAGAAGCGCCGCTAATGCTCA
* *
44898737 GGGATTTAGCGGCGTTTTTTGAAAAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCG-TTTTTGAAGAAGCGCCGCTAATGCTCA
44898779 AATTTATCAT
Statistics
Matches: 247, Mismatches: 37, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.00
40 34 0.14
41 152 0.62
42 60 0.24
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCA
Found at i:44899749 original size:14 final size:15
Alignment explanation
Indices: 44899730--44899774 Score: 67
Period size: 14 Copynumber: 3.1 Consensus size: 15
44899720 AGGACAGTTA
44899730 TAAGGGTT-GGGGTT
1 TAAGGGTTAGGGGTT
44899744 TAAGGGTTAGGGG-T
1 TAAGGGTTAGGGGTT
*
44899758 TAGGGGTTAGGGGTT
1 TAAGGGTTAGGGGTT
44899773 TA
1 TA
44899775 TGGTTTATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 21 0.75
15 7 0.25
ACGTcount: A:0.18, C:0.00, G:0.49, T:0.33
Consensus pattern (15 bp):
TAAGGGTTAGGGGTT
Found at i:44899759 original size:7 final size:7
Alignment explanation
Indices: 44899733--44899772 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
44899723 ACAGTTATAA
44899733 GGGTT-G
1 GGGTTAG
*
44899739 GGGTTTAA
1 GGG-TTAG
44899747 GGGTTAG
1 GGGTTAG
44899754 GGGTTAG
1 GGGTTAG
44899761 GGGTTAG
1 GGGTTAG
44899768 GGGTT
1 GGGTT
44899773 TATGGTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
6 3 0.10
7 24 0.80
8 3 0.10
ACGTcount: A:0.12, C:0.00, G:0.55, T:0.33
Consensus pattern (7 bp):
GGGTTAG
Found at i:44899779 original size:14 final size:14
Alignment explanation
Indices: 44899732--44899779 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
44899722 GACAGTTATA
44899732 AGGGTT-GGGGTTT
1 AGGGTTAGGGGTTT
44899745 AAGGGTTAGGGG-TT
1 -AGGGTTAGGGGTTT
44899759 AGGGGTTAGGGGTTT
1 A-GGGTTAGGGGTTT
*
44899774 ATGGTT
1 AGGGTT
44899780 TATGTTTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.03
14 22 0.73
15 7 0.23
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (14 bp):
AGGGTTAGGGGTTT
Found at i:44900865 original size:17 final size:17
Alignment explanation
Indices: 44900840--44900879 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
44900830 TCATTGCACT
*
44900840 GAAACCCTAGATGAGAA
1 GAAATCCTAGATGAGAA
44900857 GAAATCCTAGATGAGAA
1 GAAATCCTAGATGAGAA
44900874 GAAATC
1 GAAATC
44900880 GGAGGAGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.47, C:0.15, G:0.23, T:0.15
Consensus pattern (17 bp):
GAAATCCTAGATGAGAA
Found at i:44902921 original size:23 final size:23
Alignment explanation
Indices: 44902887--44903312 Score: 333
Period size: 23 Copynumber: 18.7 Consensus size: 23
44902877 GAATGTTGTT
44902887 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
* * *
44902910 AATTTAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
44902933 AATTGAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
*
44902956 AATTGAAGTGTTTAAGTGCAGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
44902979 AATTGAAGTGCTT-AGTTGCTGGA
1 AATTGAAGTGTTTAAG-TGCTGCA
* * *
44903002 AATTG-AGATGTTTTA-TCACTG-T
1 AATTGAAG-TGTTTAAGT-GCTGCA
* * * * * **
44903024 GATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAGTGCTGCA
44903047 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
* *
44903070 AATTTAAGTGTTTAAATGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
44903093 AATTGAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
44903116 AATTGAAGTGCTT-AGTTGCTGGA
1 AATTGAAGTGTTTAAG-TGCTGCA
* * *
44903139 AATTG-AGATGTTTTA-TCGTTG-T
1 AATTGAAG-TGTTTAAGT-GCTGCA
* * * * **
44903161 AACTG-AGATGTATAAATGTTGTT
1 AATTGAAG-TGTTTAAGTGCTGCA
44903184 AATTGATA-TGTTTAAGTGCTGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
* * *
44903207 AATTTAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
44903230 AATTGAAGTGTTTAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
*
44903253 AATTGAAGTGTTT-AGTTGCTGAA
1 AATTGAAGTGTTTAAG-TGCTGCA
*
44903276 AATTG-AGATGTTAAAGTGCTGC-
1 AATTGAAG-TGTTTAAGTGCTGCA
44903298 AATTGAAGTGTTTAA
1 AATTGAAGTGTTTAA
44903313 ATTTAACTTG
Statistics
Matches: 326, Mismatches: 54, Indels: 47
0.76 0.13 0.11
Matches are distributed among these distances:
22 55 0.17
23 266 0.82
24 4 0.01
25 1 0.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.39
Consensus pattern (23 bp):
AATTGAAGTGTTTAAGTGCTGCA
Found at i:44903134 original size:137 final size:137
Alignment explanation
Indices: 44902918--44903287 Score: 623
Period size: 137 Copynumber: 2.7 Consensus size: 137
44902908 CAAATTTAAG
* * * * *
44902918 TGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCAGCAAATT
1 TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
* * *
44902983 GAAGTGCTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTGATTGAGGTGTATAAATGTTGTTA
66 GAAGTGCTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAACTGAGATGTATAAATGTTGTTA
44903048 ATTGATA
131 ATTGATA
44903055 TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
1 TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
**
44903120 GAAGTGCTTAGTTGCTGGAAATTGAGATGTTTTATCGTTGTAACTGAGATGTATAAATGTTGTTA
66 GAAGTGCTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAACTGAGATGTATAAATGTTGTTA
44903185 ATTGATA
131 ATTGATA
*
44903192 TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATT
1 TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
* *
44903257 GAAGTGTTTAGTTGCTGAAAATTGAGATGTT
66 GAAGTGCTTAGTTGCTGGAAATTGAGATGTT
44903288 AAAGTGCTGC
Statistics
Matches: 220, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
137 220 1.00
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.39
Consensus pattern (137 bp):
TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
GAAGTGCTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAACTGAGATGTATAAATGTTGTTA
ATTGATA
Found at i:44904033 original size:43 final size:43
Alignment explanation
Indices: 44903915--44904206 Score: 388
Period size: 43 Copynumber: 6.8 Consensus size: 43
44903905 TTTTCGTGAC
* * *
44903915 CTTTAGTGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* ** **
44903958 CTTT-GCGGGGTTTGTGGGAAAAATGCCGCTAAAGGTCCTAAT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* * *
44904000 CTTTAGCGGCGTTTATGGGAAAAGCGACGCTAAAGGTCCTGAT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* * * *
44904043 CTTTAGCGGCATTTGTGGGTAAAGCGCCACTAAAGGTTCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* * **
44904086 CTTTAGCGGCATTTGTGGGTAAAGTACCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
* *
44904129 CTTTAGCGGCGTTTGTGGGTAAAGCGCCACTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
44904172 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
44904207 TTAGCGACGC
Statistics
Matches: 217, Mismatches: 31, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 34 0.16
43 183 0.84
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
Found at i:44904305 original size:22 final size:22
Alignment explanation
Indices: 44904278--44904319 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
44904268 TAGGGACGCT
*
44904278 AAAAGCGCCGCTAAATGCCTAA
1 AAAAGCGCCGCTAAAAGCCTAA
44904300 AAAAGCGCCGCTAAAAGCCT
1 AAAAGCGCCGCTAAAAGCCT
44904320 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.29, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAAGCGCCGCTAAAAGCCTAA
Found at i:44906286 original size:26 final size:29
Alignment explanation
Indices: 44906257--44906317 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 29
44906247 TTTGTTAGGA
* *
44906257 CTTTGAAT-ATTTCCTC-TTTGAAC-TTT
1 CTTTGAATAATATCATCTTTTGAACTTTT
44906283 CTTTG-ATAATATCATCTTTTGAACTTTT
1 CTTTGAATAATATCATCTTTTGAACTTTT
44906311 CTTTGAA
1 CTTTGAA
44906318 ACATTACCTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 11 0.38
27 7 0.24
28 8 0.28
29 1 0.03
ACGTcount: A:0.23, C:0.16, G:0.08, T:0.52
Consensus pattern (29 bp):
CTTTGAATAATATCATCTTTTGAACTTTT
Found at i:44910021 original size:19 final size:19
Alignment explanation
Indices: 44909984--44910019 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
44909974 TTTTGACTAA
44909984 CATCTATGATTTCTATTTT
1 CATCTATGATTTCTATTTT
44910003 CATC-ATGATTTCT-TTTT
1 CATCTATGATTTCTATTTT
44910020 TTATAATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 9 0.53
19 4 0.24
ACGTcount: A:0.19, C:0.17, G:0.06, T:0.58
Consensus pattern (19 bp):
CATCTATGATTTCTATTTT
Found at i:44911963 original size:13 final size:13
Alignment explanation
Indices: 44911945--44911969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44911935 TTTTACAAAG
44911945 AAAAATAAAAAAT
1 AAAAATAAAAAAT
44911958 AAAAATAAAAAA
1 AAAAATAAAAAA
44911970 CCAAAACCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:44913275 original size:24 final size:26
Alignment explanation
Indices: 44913247--44913306 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
44913237 TCCTATGCTA
44913247 TTTATTTTGAAA-T-TATTTA-TATTG
1 TTTATTTTGAAACTGT-TTTATTATTG
* *
44913271 TTTATTTCGAAACTGTTTTATTTTTG
1 TTTATTTTGAAACTGTTTTATTATTG
44913297 TTTATTTTGA
1 TTTATTTTGA
44913307 GTTTCTATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 11 0.37
25 5 0.17
26 14 0.47
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.63
Consensus pattern (26 bp):
TTTATTTTGAAACTGTTTTATTATTG
Found at i:44925667 original size:43 final size:43
Alignment explanation
Indices: 44925615--44925853 Score: 172
Period size: 43 Copynumber: 5.6 Consensus size: 43
44925605 AGATTGAAGA
44925615 TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
* * *
44925658 TCTTATCTCCCTTAGCAGTAGTGGAGCAGA--GAGAAGAAACC-G
1 TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGA-AAG-TACCAG
* ** * * * * *
44925700 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG-TA-T-CCAA
1 -TCTTATCTCCCT-AAGCAGTAGTGGAGCGGATCGAAAGTACCAG
* * * * * * *
44925742 CCTTATCTTCCTGAGCAGTAGCGGAGTAGG-TCCAAGATTGA--AG
1 TCTTATCTCCCTAAGCAGTAGTGGAG-CGGATCGAA-AGT-ACCAG
44925785 ATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
*
44925829 TCTTATCTCCTTAAGCAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGA
44925854 ACAGACAGAA
Statistics
Matches: 145, Mismatches: 34, Indels: 34
0.68 0.16 0.16
Matches are distributed among these distances:
40 10 0.07
41 14 0.10
42 6 0.04
43 72 0.50
44 42 0.29
46 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAG
Found at i:44925734 original size:87 final size:83
Alignment explanation
Indices: 44925613--44925924 Score: 245
Period size: 87 Copynumber: 3.6 Consensus size: 83
44925603 CAAGATTGAA
* ** * *
44925613 GATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTTAGCAGTA
1 GATCTTATCTCTCTAAGTTGCAGTAGAGCGGATCG-AA-T-CCAGTCTTATCTCCCTTAGCAGTA
44925678 GTGGAGCAGAGAGAAGAAACC
63 GTGGAGCAGAGAGAAGAAACC
* * ** * * *
44925699 GATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGTATCCAACCTTATCTTCCTGAGCAGTAGC
1 GATCTTATCTCTCT-AAGTTGCAGTAGAGCGGATCGAATCCAGTCTTATCTCCCTTAGCAGTAGT
* **
44925764 GGAGTAG-GTCCAAGATTGAA--
65 GGAGCAGAG-AGAAGA---AACC
* ** * *
44925784 GATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCT-CCTTAAGCAGT
1 GATCTTATCTCTCTAAGTTGCAGTAGAGCGGATCG-AA-T-CCAGTCTTATCTCCCTT-AGCAGT
* *
44925848 AGTGGAACAGACAGAAGAAACCAC
62 AGTGGAGCAGAGAGAAGAAA-C-C
*
44925872 AGATCTTATCTCTCTGAAGTTGCAGTAGAGCGGATCGCATCCAGTCTTATCTC
1 -GATCTTATCTCTCT-AAGTTGCAGTAGAGCGGATCGAATCCAGTCTTATCTC
44925925 ACTGAAGTTG
Statistics
Matches: 172, Mismatches: 37, Indels: 32
0.71 0.15 0.13
Matches are distributed among these distances:
83 1 0.01
84 49 0.28
85 15 0.09
86 18 0.10
87 57 0.33
88 1 0.01
89 14 0.08
90 17 0.10
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (83 bp):
GATCTTATCTCTCTAAGTTGCAGTAGAGCGGATCGAATCCAGTCTTATCTCCCTTAGCAGTAGTG
GAGCAGAGAGAAGAAACC
Found at i:44925866 original size:171 final size:175
Alignment explanation
Indices: 44925564--44925923 Score: 588
Period size: 171 Copynumber: 2.1 Consensus size: 175
44925554 GAAGTCATCA
*
44925564 TATCAAACCTTATC-TCTCTGAGCAGCAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
1 TATCCAACCTTATCTTCTCTGAGCAGCAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
* *
44925628 AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTTAGCAGTAGTGGAGCAGAGAGAA
66 AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTTAGCAGTAGTGGAACAGACAGAA
44925693 GAAA-C-C-GATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG
131 GAAACCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG
*
44925735 TATCCAACCTTATCTTC-CTGAGCAGTAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
1 TATCCAACCTTATCTTCTCTGAGCAGCAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
44925799 AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCT-CCTTAAGCAGTAGTGGAACAGACAGA
66 AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTT-AGCAGTAGTGGAACAGACAGA
* *
44925863 AGAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCGGATCG
130 AGAAACCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG
* **
44925909 CATCCAGTCTTATCT
1 TATCCAACCTTATCT
44925924 CACTGAAGTT
Statistics
Matches: 175, Mismatches: 9, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
170 4 0.02
171 121 0.69
172 3 0.02
173 1 0.01
174 46 0.26
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (175 bp):
TATCCAACCTTATCTTCTCTGAGCAGCAGCGGAGTAGGTCCAAGATTGAAGATCTTATCTCCCTA
AGCAGTAGTGGAGCGGATCGAAAGTACCAGTCTTATCTCCCTTAGCAGTAGTGGAACAGACAGAA
GAAACCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCG
Found at i:44925978 original size:85 final size:87
Alignment explanation
Indices: 44925825--44925987 Score: 199
Period size: 85 Copynumber: 1.9 Consensus size: 87
44925815 ATCGAAAGTA
* * * * *
44925825 CCAGTCTTATCTCCTTAAGCAGTAGTGGAACAGACAGAAGAAACCACAGATCTTATCTCTCTGAA
1 CCAGTCTTATCTCCTGAAGCAGCAGTGGAACAGACAAAAGAAACCACAGATCCTATCTCCCTGAA
44925890 GTTGCAGTAGAGCGGATCGCAT
66 GTTGCAGTAGAGCGGATCGCAT
**
44925912 CCAGTCTTATCTCACTGAAGTTGCAGT-GAAGCAGACAAAAGAAA-C-CA-ATCCTATCTCCCTG
1 CCAGTCTTATCTC-CTGAAGCAGCAGTGGAA-CAGACAAAAGAAACCACAGATCCTATCTCCCTG
* *
44925973 AAGTTGTAGTGGAGC
64 AAGTTGCAGTAGAGC
44925988 AGATTAAAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
85 25 0.38
86 2 0.03
87 17 0.26
88 21 0.32
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (87 bp):
CCAGTCTTATCTCCTGAAGCAGCAGTGGAACAGACAAAAGAAACCACAGATCCTATCTCCCTGAA
GTTGCAGTAGAGCGGATCGCAT
Found at i:44930581 original size:19 final size:18
Alignment explanation
Indices: 44930548--44930594 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
44930538 TTCACTTCGT
*
44930548 ATTTCATCATTTCATATTAC
1 ATTTC-TCATCTCATATT-C
44930568 ATTTCTCATCTCATATTC
1 ATTTCTCATCTCATATTC
*
44930586 ATTTATCAT
1 ATTTCTCAT
44930595 TTTTGCCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.36
19 11 0.44
20 5 0.20
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTCTCATCTCATATTC
Found at i:44930619 original size:43 final size:43
Alignment explanation
Indices: 44930569--44930654 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
44930559 TCATATTACA
44930569 TTTCTCATCTCATATTCATTTATCAT-TTTTGCCATTTCAATAT
1 TTTCTCATCTCATATTCATTTATCATCTTTT-CCATTTCAATAT
* * *
44930612 TTTCTCATCTTATATTCATTTCTCATCTTTTCTATTTCAATAT
1 TTTCTCATCTCATATTCATTTATCATCTTTTCCATTTCAATAT
44930655 CAATCACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 35 0.90
44 4 0.10
ACGTcount: A:0.22, C:0.21, G:0.01, T:0.56
Consensus pattern (43 bp):
TTTCTCATCTCATATTCATTTATCATCTTTTCCATTTCAATAT
Found at i:44933513 original size:7 final size:7
Alignment explanation
Indices: 44933501--44933528 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
44933491 AAATTAAGTA
44933501 ATAAAAT
1 ATAAAAT
44933508 ATAAAAT
1 ATAAAAT
44933515 ATAAAAT
1 ATAAAAT
44933522 ATAAAAT
1 ATAAAAT
44933529 TTAGAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
ATAAAAT
Found at i:44934261 original size:33 final size:32
Alignment explanation
Indices: 44934224--44934297 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 32
44934214 TTTAAATTTT
*
44934224 AATATTTTTATAAATTTTTTTTACAATGTTAAA
1 AATATTTTTAT-AATTTTTTTGACAATGTTAAA
* * *
44934257 AATATTCTTTATAATTTTTTTGACAATTTTTAT
1 AATATT-TTTATAATTTTTTTGACAATGTTAAA
44934290 AATATTTT
1 AATATTTT
44934298 ATTAGAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.06
33 29 0.81
34 5 0.14
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.58
Consensus pattern (32 bp):
AATATTTTTATAATTTTTTTGACAATGTTAAA
Found at i:44939744 original size:15 final size:15
Alignment explanation
Indices: 44939719--44939758 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
44939709 TTTCATCAAC
*
44939719 ATCACTAATAAAAAA
1 ATCATTAATAAAAAA
*
44939734 ATTATTAATAAAAAA
1 ATCATTAATAAAAAA
44939749 ATCATTAATA
1 ATCATTAATA
44939759 CATTTGTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
ATCATTAATAAAAAA
Found at i:44940127 original size:6 final size:6
Alignment explanation
Indices: 44940101--44940157 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
44940091 AACTCTCTAC
* * * * *
44940101 AATATT AA-ATT TATATT AATATG AATATG ACTATG AATATT AATATT
1 AATATT AATATT AATATT AATATT AATATT AATATT AATATT AATATT
44940148 AATATT AATA
1 AATATT AATA
44940158 AAAGTGTTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
5 4 0.09
6 40 0.91
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (6 bp):
AATATT
Found at i:44943889 original size:100 final size:100
Alignment explanation
Indices: 44943716--44943916 Score: 350
Period size: 100 Copynumber: 2.0 Consensus size: 100
44943706 AAAAGGCTAA
*
44943716 ACTCGTAGATAATCATTCTATTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTTT
1 ACTCGTAAATAATCATTCTATTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTTT
* *
44943781 TCTAATATTTTAATCAATACTTTCCCATGTATACC
66 TCTAATATTTTAATCAATACCTTCCCATATATACC
*
44943816 ACTCGTAAATAATCATT-TCGTTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTT
1 ACTCGTAAATAATCATTCT-ATTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTT
44943880 TTCTAATATTTTAATCAATACCTTCCCATATATACC
65 TTCTAATATTTTAATCAATACCTTCCCATATATACC
44943916 A
1 A
44943917 AACGTTTTAA
Statistics
Matches: 96, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
99 1 0.01
100 95 0.99
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.36
Consensus pattern (100 bp):
ACTCGTAAATAATCATTCTATTCCTAGAAAAGTACTTAGTAAATCAAACATGATAATATAACTTT
TCTAATATTTTAATCAATACCTTCCCATATATACC
Found at i:44946397 original size:12 final size:12
Alignment explanation
Indices: 44946375--44946403 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
44946365 AAAATGAAGT
44946375 TATTT-AAATAC
1 TATTTAAAATAC
44946386 TATTTAAAATAC
1 TATTTAAAATAC
44946398 TATTTA
1 TATTTA
44946404 GGCAAGACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (12 bp):
TATTTAAAATAC
Found at i:44947263 original size:26 final size:26
Alignment explanation
Indices: 44947231--44947283 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
44947221 AACATGGGAT
*
44947231 ATAAGAAATTAAGATCAAAATATAAA
1 ATAAGAAATTAACATCAAAATATAAA
* *
44947257 ATAAGAAATTAACATTAGAATATAAA
1 ATAAGAAATTAACATCAAAATATAAA
44947283 A
1 A
44947284 CAAATTACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.64, C:0.04, G:0.08, T:0.25
Consensus pattern (26 bp):
ATAAGAAATTAACATCAAAATATAAA
Found at i:44947670 original size:50 final size:50
Alignment explanation
Indices: 44947595--44947697 Score: 161
Period size: 50 Copynumber: 2.1 Consensus size: 50
44947585 AAAAATACAA
* **
44947595 AAAAATATTTACAAATATAATTCATTGATAAAAGAATAAGTGTTAGTATG
1 AAAAATATATACAAATATAATTCATTGATAAAAGAATAAGCATTAGTATG
* *
44947645 AAAATTATATACAAGTATAATTCATTGATAAAAGAATAAGCATTAGTATG
1 AAAAATATATACAAATATAATTCATTGATAAAAGAATAAGCATTAGTATG
44947695 AAA
1 AAA
44947698 TAAACTTGTG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.51, C:0.05, G:0.12, T:0.32
Consensus pattern (50 bp):
AAAAATATATACAAATATAATTCATTGATAAAAGAATAAGCATTAGTATG
Found at i:44949784 original size:43 final size:43
Alignment explanation
Indices: 44949686--44949849 Score: 181
Period size: 43 Copynumber: 3.9 Consensus size: 43
44949676 TAAGGTTACC
* * *
44949686 GAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAT
1 GAGATTTCATGTAAGACCATGTCTGGGATATTGGCATCGATAT
* *
44949728 GAGAATTT-GTGTAAGACCATGTCTGGGAAATTGGCATCGATAT
1 GAG-ATTTCATGTAAGACCATGTCTGGGATATTGGCATCGATAT
* * * *
44949771 GTGATTTCATGTAAGACCATGGCTGGGCTATTGGCATCGATAC
1 GAGATTTCATGTAAGACCATGTCTGGGATATTGGCATCGATAT
* * * *
44949814 GAGATTACATGTAAGATCATATCTAGGATA-TGGCAT
1 GAGATTTCATGTAAGACCATGTCTGGGATATTGGCAT
44949850 TGTTACGGTA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 33 0.32
43 70 0.68
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (43 bp):
GAGATTTCATGTAAGACCATGTCTGGGATATTGGCATCGATAT
Found at i:44955547 original size:24 final size:25
Alignment explanation
Indices: 44955492--44955554 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
44955482 TTTTAGATCA
* *
44955492 CTTGATTCATCAACTTCGTTCCTTT
1 CTTGATTCATCGACTTCGCTCCTTT
44955517 CTTGATTCATCGACTTCGCTCC-TT
1 CTTGATTCATCGACTTCGCTCCTTT
44955541 CTTGATTCATCGAC
1 CTTGATTCATCGAC
44955555 CATTCCGTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 16 0.44
25 20 0.56
ACGTcount: A:0.16, C:0.30, G:0.11, T:0.43
Consensus pattern (25 bp):
CTTGATTCATCGACTTCGCTCCTTT
Found at i:44957658 original size:21 final size:21
Alignment explanation
Indices: 44957634--44957678 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
44957624 TCAACAAGGG
* *
44957634 TGTTTTCAAAATTCAATACTT
1 TGTTTTCAAAACTCAACACTT
*
44957655 TGTTTTCGAAACTCAACACTT
1 TGTTTTCAAAACTCAACACTT
44957676 TGT
1 TGT
44957679 GCTCATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (21 bp):
TGTTTTCAAAACTCAACACTT
Found at i:44959094 original size:103 final size:102
Alignment explanation
Indices: 44958955--44959152 Score: 296
Period size: 103 Copynumber: 1.9 Consensus size: 102
44958945 TGAAGAAAGG
44958955 GGAAAAAAATAGGAAAATTAAATCTCCCTGATGAGAAATTGAATAGATGTTGAATTG-CCCAATA
1 GGAAAAAAATAGGAAAATTAAATCTCCCTGATGAGAAATTGAATAGATGTTGAATTGCCCCAA-A
44959019 CCCT-ATATCCCTTT-TTCTCTAACAGTGAAGATGGTGAA
65 CCCTCA-ATCCCTTTCTT-TCTAACAGTGAAGATGGTGAA
* * *
44959057 GGAACAAAATAAGGAAAATCT-AGTCTCCCTGATGAGAAATTGAATAGATGTTGAGTTGCCCCAA
1 GGAAAAAAAT-AGGAAAAT-TAAATCTCCCTGATGAGAAATTGAATAGATGTTGAATTGCCCCAA
44959121 ACCCTCAATCCCTTTCTTTCTAACAGTGAAGA
64 ACCCTCAATCCCTTTCTTTCTAACAGTGAAGA
44959153 CGATGAAGAA
Statistics
Matches: 88, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
102 9 0.10
103 70 0.80
104 9 0.10
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (102 bp):
GGAAAAAAATAGGAAAATTAAATCTCCCTGATGAGAAATTGAATAGATGTTGAATTGCCCCAAAC
CCTCAATCCCTTTCTTTCTAACAGTGAAGATGGTGAA
Found at i:44960475 original size:20 final size:21
Alignment explanation
Indices: 44960447--44960491 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
44960437 GTTTGAATGT
*
44960447 TGTTAATT-ATGTTGCCCAAA
1 TGTTAATTAAAGTTGCCCAAA
* *
44960467 TGTTCATTAAAGTTGTCCAAA
1 TGTTAATTAAAGTTGCCCAAA
44960488 TGTT
1 TGTT
44960492 TATGCATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (21 bp):
TGTTAATTAAAGTTGCCCAAA
Found at i:44960613 original size:71 final size:70
Alignment explanation
Indices: 44960472--44960614 Score: 157
Period size: 71 Copynumber: 2.0 Consensus size: 70
44960462 CCAAATGTTC
* * * *
44960472 ATTAAAGTTGTCCAAATGTTTATGCATTAAGGTGGTCTGAATGTTGTGAATTTAAGTTATCTGAA
1 ATTAAAGTTGTCCAAATGCTTATGAATTAAGGTGGTCTGAATGTTGTGAACTAAAGTTATCTGAA
*
44960537 TGCTA
66 CGCTA
* * *
44960542 ATTAAATGTTGTCCAAATGCCTT-TGAATTAATGTGGTCTGAAATGTTGT-AACTAAA-TTCTGT
1 ATTAAA-GTTGTCCAAATG-CTTATGAATTAAGGTGGTCTG-AATGTTGTGAACTAAAGTTATCT
44960604 CGAACGCTA
63 -GAACGCTA
44960613 AT
1 AT
44960615 GTAATGAAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
70 10 0.16
71 41 0.67
72 10 0.16
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (70 bp):
ATTAAAGTTGTCCAAATGCTTATGAATTAAGGTGGTCTGAATGTTGTGAACTAAAGTTATCTGAA
CGCTA
Found at i:44960886 original size:22 final size:22
Alignment explanation
Indices: 44960860--44960902 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
44960850 GAAAAGAAGA
44960860 TAGAAAAAGTGGAGAGTCTGGG
1 TAGAAAAAGTGGAGAGTCTGGG
44960882 TAGAAAAAGTGGAGAGTCTGG
1 TAGAAAAAGTGGAGAGTCTGG
44960903 AGAGCCCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.40, T:0.19
Consensus pattern (22 bp):
TAGAAAAAGTGGAGAGTCTGGG
Found at i:44961160 original size:24 final size:24
Alignment explanation
Indices: 44961110--44961171 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
44961100 AAGAGTCAAA
* ***
44961110 AACTGTATTTACAGAAATGTTGGG
1 AACTGTATTTATAGAAATGTCACG
*
44961134 AACTGTATTTATAGGAATGTCACG
1 AACTGTATTTATAGAAATGTCACG
*
44961158 AACTATATTGTATA
1 AACTGTATT-TATA
44961172 ATTATTACGA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (24 bp):
AACTGTATTTATAGAAATGTCACG
Found at i:44961633 original size:39 final size:39
Alignment explanation
Indices: 44961552--44961633 Score: 110
Period size: 39 Copynumber: 2.1 Consensus size: 39
44961542 TTAGAAAACG
* * *
44961552 GAAGGTCGAGATTGTAAATCAGTAGACTATAAGAAAGCT
1 GAAGGTCGAGATTGTAAATCAGCAGACCATAAAAAAGCT
** *
44961591 GAAGGTCTTGATTGTAAATCAGCAGACCATAAAAAAGTT
1 GAAGGTCGAGATTGTAAATCAGCAGACCATAAAAAAGCT
44961630 GAAG
1 GAAG
44961634 CTCATGATCG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.23
Consensus pattern (39 bp):
GAAGGTCGAGATTGTAAATCAGCAGACCATAAAAAAGCT
Found at i:44961649 original size:39 final size:39
Alignment explanation
Indices: 44961567--44961650 Score: 96
Period size: 39 Copynumber: 2.2 Consensus size: 39
44961557 TCGAGATTGT
* * * * * * *
44961567 AAATCAGTAGACTATAAGAAAGCTGAAGGTCTTGATTGT
1 AAATCAGCAGACCATAAAAAAGCTGAAGCTCATGATCGA
*
44961606 AAATCAGCAGACCATAAAAAAGTTGAAGCTCATGATCGA
1 AAATCAGCAGACCATAAAAAAGCTGAAGCTCATGATCGA
44961645 AAATCA
1 AAATCA
44961651 ATGGATCGTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (39 bp):
AAATCAGCAGACCATAAAAAAGCTGAAGCTCATGATCGA
Found at i:44963106 original size:16 final size:16
Alignment explanation
Indices: 44963085--44963117 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
44963075 TCCTAAACTT
44963085 AGTTTTTTTCACATTG
1 AGTTTTTTTCACATTG
44963101 AGTTTTTTTCACATTG
1 AGTTTTTTTCACATTG
44963117 A
1 A
44963118 TTCAATTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.55
Consensus pattern (16 bp):
AGTTTTTTTCACATTG
Found at i:44964482 original size:14 final size:13
Alignment explanation
Indices: 44964429--44964482 Score: 54
Period size: 14 Copynumber: 4.0 Consensus size: 13
44964419 AAATTTAATT
*
44964429 AATTAAAGATAAA
1 AATTAAAGAAAAA
* *
44964442 AATAATAAGAATAA
1 AATTA-AAGAAAAA
*
44964456 AATTAAAGTAAAAC
1 AATTAAAG-AAAAA
44964470 AATTAAAGAAAAA
1 AATTAAAGAAAAA
44964483 GAAAGATAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
13 11 0.34
14 21 0.66
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.20
Consensus pattern (13 bp):
AATTAAAGAAAAA
Found at i:44978176 original size:39 final size:38
Alignment explanation
Indices: 44978117--44978319 Score: 156
Period size: 39 Copynumber: 5.2 Consensus size: 38
44978107 CTCATGATCT
* *
44978117 GTTGATTTAAGATCACGACCTTTGGCTTTCTTACGGTGC
1 GTTGATTTACGATCACGACCTTCGGCTTTCTTACGGT-C
* * * *
44978156 GTTGATTTATGATCATGACCTTCAGCTTTCTTATGGTC
1 GTTGATTTACGATCACGACCTTCGGCTTTCTTACGGTC
* * * * * *
44978194 TGCTGATTTACGATCATGACCTTCGACTTTCTGACAGTTT
1 -GTTGATTTACGATCACGACCTTCGGCTTTCTTAC-GGTC
* * * *
44978234 GCTAATTTATGATCACGACCTTCGGCTTTCTTACGATCC
1 GTTGATTTACGATCACGACCTTCGGCTTTCTTACGGT-C
* ** **
44978273 GCTT-ATTTACGACCACGACCTTTAGCTTTCTTATAGTC
1 G-TTGATTTACGATCACGACCTTCGGCTTTCTTACGGTC
44978311 TGTTGATTT
1 -GTTGATTT
44978320 GATTTATGAT
Statistics
Matches: 130, Mismatches: 28, Indels: 12
0.76 0.16 0.07
Matches are distributed among these distances:
38 6 0.05
39 121 0.93
40 3 0.02
ACGTcount: A:0.19, C:0.22, G:0.18, T:0.41
Consensus pattern (38 bp):
GTTGATTTACGATCACGACCTTCGGCTTTCTTACGGTC
Found at i:44978302 original size:78 final size:78
Alignment explanation
Indices: 44978160--44978303 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
44978150 CGGTGCGTTG
* * * * * * *
44978160 ATTTATGATCATGACCTTCAGCTTTCTTATGGTCTGCTGATTTACGATCATGACCTTCGACTTTC
1 ATTTATGATCACGACCTTCAGCTTTCTTACGATCCGCTGATTTACGACCACGACCTTAGACTTTC
44978225 TGACAGTTTGCTA
66 TGACAGTTTGCTA
* *
44978238 ATTTATGATCACGACCTTCGGCTTTCTTACGATCCGCTTATTTACGACCACGACCTTTAG-CTTT
1 ATTTATGATCACGACCTTCAGCTTTCTTACGATCCGCTGATTTACGACCACGACC-TTAGACTTT
44978302 CT
65 CT
44978304 TATAGTCTGT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
78 53 0.95
79 3 0.05
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (78 bp):
ATTTATGATCACGACCTTCAGCTTTCTTACGATCCGCTGATTTACGACCACGACCTTAGACTTTC
TGACAGTTTGCTA
Found at i:44978530 original size:36 final size:35
Alignment explanation
Indices: 44978490--44978577 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 35
44978480 CGGCTTCAGT
** *
44978490 TCATTGATTTACGATCATGAACACTTCATAAAGAGC
1 TCATTGATTTACGATCATG-ACACCACATAAACAGC
* * * * *
44978526 TCATTGATTTATGATCGTGACTCCACTTAAACAGT
1 TCATTGATTTACGATCATGACACCACATAAACAGC
44978561 TCATTGATTTACGATCA
1 TCATTGATTTACGATCA
44978578 CAGCTTCAGC
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
35 25 0.60
36 17 0.40
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (35 bp):
TCATTGATTTACGATCATGACACCACATAAACAGC
Found at i:44978584 original size:98 final size:98
Alignment explanation
Indices: 44978469--44978675 Score: 290
Period size: 98 Copynumber: 2.1 Consensus size: 98
44978459 AAGCTAGCTA
* * * * * * *
44978469 ATTTACAATCACGGCTTCAGTTCATTGATTTACGATCATGAACACTTCATAAAGAGCTCATTGAT
1 ATTTACGATCACAGCTTCAGCTCAATGATTTACGATAATGAACACTTCATAAAGAGCTCACTAAT
** * *
44978534 TTATGATCGT-GACTCCACTTAAACAGTTCATTG
66 TTACAATC-TCAACTCCACTTAAACAGTTCACTG
*
44978567 ATTTACGATCACAGCTTCAGCTCAATGATTTACGATAATGAACACTTCATAAAGAGTTCACTAAT
1 ATTTACGATCACAGCTTCAGCTCAATGATTTACGATAATGAACACTTCATAAAGAGCTCACTAAT
44978632 TTACAATCTCAACTCCACTTAAACAGTTCACTG
66 TTACAATCTCAACTCCACTTAAACAGTTCACTG
44978665 ATTTACGATCA
1 ATTTACGATCA
44978676 TGACTGTCGC
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
97 1 0.01
98 95 0.99
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (98 bp):
ATTTACGATCACAGCTTCAGCTCAATGATTTACGATAATGAACACTTCATAAAGAGCTCACTAAT
TTACAATCTCAACTCCACTTAAACAGTTCACTG
Found at i:44979379 original size:48 final size:49
Alignment explanation
Indices: 44979321--44979429 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 49
44979311 AAGGGAGGAT
44979321 CTCCAAACTC-TCTACTTTTTTCCATCTTC-TCT-ACCAAAAAACCCATTC
1 CTCCAAACTCTTC-ACTTTTTT-CATCTTCTTCTCACCAAAAAACCCATTC
* * * * *
44979369 CTCCAGACTCTTCACTTTTTTTATCTTCTTCTCCACCAAAACACTCATTT
1 CTCCAAACTCTTCACTTTTTTCATCTTCTTCT-CACCAAAAAACCCATTC
44979419 CTCCAAACTCT
1 CTCCAAACTCT
44979430 AACCACCTCA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
47 6 0.12
48 20 0.39
49 2 0.04
50 23 0.45
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.38
Consensus pattern (49 bp):
CTCCAAACTCTTCACTTTTTTCATCTTCTTCTCACCAAAAAACCCATTC
Found at i:44981282 original size:49 final size:49
Alignment explanation
Indices: 44981184--44981325 Score: 140
Period size: 49 Copynumber: 2.9 Consensus size: 49
44981174 GCATGAAACG
* * * * *
44981184 TGAACTCGTGACTGTATAACCACTGTCAATTGAGAGCTCAAGTTGTACT
1 TGAACCCGTGACTGTATAACCACCGTCAATTGGGAGCCCAAGTTATACT
* * * * *
44981233 TGAACCCGTGACTGCATAACCACCATCAACTGGGAGCCCTATTTATACT
1 TGAACCCGTGACTGTATAACCACCGTCAATTGGGAGCCCAAGTTATACT
* * * * * *
44981282 TCAACCCATAACTGTATAACTACCGTGAATTGGGAGCCCGAGTT
1 TGAACCCGTGACTGTATAACCACCGTCAATTGGGAGCCCAAGTT
44981326 GCAATTCAAC
Statistics
Matches: 73, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TGAACCCGTGACTGTATAACCACCGTCAATTGGGAGCCCAAGTTATACT
Found at i:44982225 original size:23 final size:23
Alignment explanation
Indices: 44982180--44982232 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
44982170 TAAACTAGTA
* **
44982180 GAGAGAATTGAGAGAATTTGATT
1 GAGAGAATTGAAAGAATAGGATT
44982203 GAGAGAATTGAAAGAATAGGATT
1 GAGAGAATTGAAAGAATAGGATT
*
44982226 GAAAGAA
1 GAGAGAA
44982233 GACAAAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (23 bp):
GAGAGAATTGAAAGAATAGGATT
Found at i:44987033 original size:105 final size:105
Alignment explanation
Indices: 44986917--44987123 Score: 333
Period size: 105 Copynumber: 2.0 Consensus size: 105
44986907 ACTTGTTCTA
* * *
44986917 AAAAAATATTTCCCATAACATAAAAAAGGTTGGGTCATAGTAACATATTGAGTATTTTATAATTT
1 AAAAAATATTTCCCATAACATAAAAAAGGTTGGGTCATACTAACATATTGAATATCTTATAATTT
44986982 CAATCATAGGTAGAATTGAGATGATCCATACATCAAATCT
66 CAATCATAGGTAGAATTGAGATGATCCATACATCAAATCT
* * *
44987022 AAAAAATATTTCCCATAGCATAAAAAAGGTTGGGTCGTACTGACATATTGAATATCTTATAATTT
1 AAAAAATATTTCCCATAACATAAAAAAGGTTGGGTCATACTAACATATTGAATATCTTATAATTT
* * *
44987087 CAATCATAGGTAGAATTGAGATGGTCTATACTTCAAA
66 CAATCATAGGTAGAATTGAGATGATCCATACATCAAA
44987124 GAGTACATGA
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
105 93 1.00
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (105 bp):
AAAAAATATTTCCCATAACATAAAAAAGGTTGGGTCATACTAACATATTGAATATCTTATAATTT
CAATCATAGGTAGAATTGAGATGATCCATACATCAAATCT
Found at i:45001758 original size:44 final size:45
Alignment explanation
Indices: 45001702--45002092 Score: 171
Period size: 44 Copynumber: 8.5 Consensus size: 45
45001692 AGTCAGATCT
*
45001702 TATCTTCC-TGAGATTACAGTGGAGCAGATTGAAGCT-AGTAATCC
1 TATC-TCCTTGAGATTACAGTGGAGTAGATTGAAGCTAAGTAATCC
* ** * *
45001746 TATCTCCTTGAGATTACAGTGGAGTGGATT-AAAATAAAG-GATCT
1 TATCTCCTTGAGATTACAGTGGAGTAGATTGAAGCT-AAGTAATCC
* * * *
45001790 TATCT-CTCTGA-AGTTACAGCAGG-GTAGATCGCATCAGATTGAAGTCAGATCT
1 TATCTCCT-TGAGA-TTACAG-TGGAGTAGATTG-A--AG-CT-AAGT-A-ATCC
* *
45001842 TATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCT-AGTAGTCC
1 TATCTCCTTGAGATTACAGTGGAGTAGATTGAAGCTAAGTAATCC
** ** * *
45001886 TATCTCCTTGAGATTACAGTGGAGCGGATT-AAAATAAAG-GATCT
1 TATCTCCTTGAGATTACAGTGGAGTAGATTGAAGCT-AAGTAATCC
*** * * *
45001930 TATCT-CTCTGA-AGTTACAACAGAGTAGATCGCATCAGATTGAAGTCAGATCT
1 TATCTCCT-TGAGA-TTACAGTGGAGTAGATTG-A--AG-CT-AAGT-A-ATCC
* *
45001982 TATCTCCATGAGATTACAGTAGAGTAGATTGAAGCTAA-TAATCC
1 TATCTCCTTGAGATTACAGTGGAGTAGATTGAAGCTAAGTAATCC
* * * * * *
45002026 TACCTCCCTGAGATTATAGCGGAGCAGACTGAAGCT-AGTAATCC
1 TATCTCCTTGAGATTACAGTGGAGTAGATTGAAGCTAAGTAATCC
* * *
45002070 TACCTCCCTAAGATTACAGTGGA
1 TATCTCCTTGAGATTACAGTGGA
45002093 TCGAAGCTCC
Statistics
Matches: 262, Mismatches: 53, Indels: 64
0.69 0.14 0.17
Matches are distributed among these distances:
43 16 0.06
44 154 0.59
45 8 0.03
46 6 0.02
47 2 0.01
48 4 0.02
49 12 0.05
51 4 0.02
52 52 0.20
53 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (45 bp):
TATCTCCTTGAGATTACAGTGGAGTAGATTGAAGCTAAGTAATCC
Found at i:45001869 original size:52 final size:51
Alignment explanation
Indices: 45001785--45002010 Score: 151
Period size: 52 Copynumber: 4.7 Consensus size: 51
45001775 TAAAATAAAG
* * *
45001785 GATCTTATCTCTCTGA-AGTTACAGCAGGGTAGATCGCATCAGATTGAAGTCA
1 GATCTTATCTCCCTGAGA-TTACAGTAGAGTAGATCGCATCAGATTGAAGT-A
* * *
45001837 GATCTTATCTCCCTGAGATTACAGTGGAGTAGATTG-A--AG-CT--AGTA
1 GATCTTATCTCCCTGAGATTACAGTAGAGTAGATCGCATCAGATTGAAGTA
* * * * * * *
45001882 G-TCCTATCTCCTTGAGATTACAGT-G-G-AG--CGGATTAAAATAAAG--
1 GATCTTATCTCCCTGAGATTACAGTAGAGTAGATCGCATCAGATTGAAGTA
* **
45001925 GATCTTATCTCTCTGA-AGTTACAACAGAGTAGATCGCATCAGATTGAAGTCA
1 GATCTTATCTCCCTGAGA-TTACAGTAGAGTAGATCGCATCAGATTGAAGT-A
*
45001977 GATCTTATCTCCATGAGATTACAGTAGAGTAGAT
1 GATCTTATCTCCCTGAGATTACAGTAGAGTAGAT
45002011 TGAAGCTAAT
Statistics
Matches: 131, Mismatches: 25, Indels: 36
0.68 0.13 0.19
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 2 0.02
42 2 0.02
43 4 0.03
44 37 0.28
45 5 0.04
46 4 0.03
47 2 0.02
48 1 0.01
49 12 0.09
51 1 0.01
52 57 0.44
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (51 bp):
GATCTTATCTCCCTGAGATTACAGTAGAGTAGATCGCATCAGATTGAAGTA
Done.