Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 148 of 221
Found at i:45169009 original size:17 final size:18
Alignment explanation
Indices: 45168875--45169011 Score: 99
Period size: 17 Copynumber: 7.6 Consensus size: 18
45168865 TGAAACACGA
*
45168875 GAAATTTTTTTAAAACAC
1 GAAATTTTTTGAAAACAC
*
45168893 GAGAA--TTTTGAAACACAA
1 GA-AATTTTTTGAAA-ACAC
* *
45168911 TAAATTTTTTTTAAAACAC
1 GAAA-TTTTTTGAAAACAC
45168930 GGAAA-TTTTTG-AAACAC
1 -GAAATTTTTTGAAAACAC
45168947 GAGAATTTTTTG-AAACAC
1 GA-AATTTTTTGAAAACAC
* *
45168965 AAAAATTTTTG-AAACAC
1 GAAATTTTTTGAAAACAC
45168982 GAGAATTTTTTTTGAAAACAC
1 GA-AA--TTTTTTGAAAACAC
45169003 -AAATTTTTT
1 GAAATTTTTT
45169012 TGATAAATTA
Statistics
Matches: 96, Mismatches: 11, Indels: 25
0.73 0.08 0.19
Matches are distributed among these distances:
16 2 0.02
17 38 0.40
18 26 0.27
19 7 0.07
20 17 0.18
21 6 0.06
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.36
Consensus pattern (18 bp):
GAAATTTTTTGAAAACAC
Found at i:45169009 original size:18 final size:19
Alignment explanation
Indices: 45168875--45169014 Score: 97
Period size: 18 Copynumber: 7.7 Consensus size: 19
45168865 TGAAACACGA
45168875 GAAATTTTTTT-AAAACAC
1 GAAATTTTTTTGAAAACAC
*
45168893 GAGAA---TTTTGAAACACAA
1 GA-AATTTTTTTGAAA-ACAC
* *
45168911 TAAATTTTTTTTAAAACAC
1 GAAATTTTTTTGAAAACAC
45168930 GGAAA--TTTTTG-AAACAC
1 -GAAATTTTTTTGAAAACAC
45168947 GAGAA-TTTTTTG-AAACAC
1 GA-AATTTTTTTGAAAACAC
**
45168965 -AAAAATTTTTG-AAACAC
1 GAAATTTTTTTGAAAACAC
45168982 GAGAATTTTTTTTGAAAACAC
1 GA-AA-TTTTTTTGAAAACAC
45169003 -AAATTTTTTTGA
1 GAAATTTTTTTGA
45169015 TAAATTACAT
Statistics
Matches: 99, Mismatches: 9, Indels: 28
0.73 0.07 0.21
Matches are distributed among these distances:
16 8 0.08
17 26 0.26
18 33 0.33
19 9 0.09
20 17 0.17
21 6 0.06
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (19 bp):
GAAATTTTTTTGAAAACAC
Found at i:45169011 original size:37 final size:36
Alignment explanation
Indices: 45168864--45169010 Score: 176
Period size: 35 Copynumber: 4.1 Consensus size: 36
45168854 CGTGATCCGA
*
45168864 TTGAAACACGAGAAATTTTTTTAAAACACGAGAA-TT
1 TTGAAACACGAGAATTTTTTTTAAAACACGA-AATTT
* *
45168900 TTGAAACACAATAAATTTTTTTTAAAACACGGAAATTT
1 TTGAAACACGA-GAATTTTTTTTAAAACAC-GAAATTT
* *
45168938 TTGAAACACGAGAA--TTTTTTGAAACACAAAAATTT
1 TTGAAACACGAGAATTTTTTTTAAAACAC-GAAATTT
45168973 TTGAAACACGAGAATTTTTTTTGAAAACAC-AAATTT
1 TTGAAACACGAGAATTTTTTTT-AAAACACGAAATTT
45169009 TT
1 TT
45169011 TTGATAAATT
Statistics
Matches: 96, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
35 32 0.33
36 18 0.19
37 26 0.27
38 20 0.21
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (36 bp):
TTGAAACACGAGAATTTTTTTTAAAACACGAAATTT
Found at i:45169723 original size:9 final size:9
Alignment explanation
Indices: 45169711--45169794 Score: 80
Period size: 9 Copynumber: 9.1 Consensus size: 9
45169701 TAATTTTTAA
45169711 TTTTTTTCT
1 TTTTTTTCT
45169720 TTTTTTTCT
1 TTTTTTTCT
45169729 TTTTTTTCT
1 TTTTTTTCT
* *
45169738 TTCTTCT-T
1 TTTTTTTCT
45169746 TTTTTTTCT
1 TTTTTTTCT
* *
45169755 TCTTCTTCT
1 TTTTTTTCT
*
45169764 TTTTCTTCT
1 TTTTTTTCT
*
45169773 TCTTCTTTCT
1 T-TTTTTTCT
45169783 TTCTTTCTTCT
1 TT-TTT-TTCT
45169794 T
1 T
45169795 CTTCAAAACC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
8 6 0.10
9 41 0.67
10 9 0.15
11 5 0.08
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:45169725 original size:25 final size:25
Alignment explanation
Indices: 45169697--45169794 Score: 62
Period size: 25 Copynumber: 4.0 Consensus size: 25
45169687 TATTTTCAAA
*
45169697 TTTTTAATTTTTAATT-TTT-TTCTT
1 TTTTTTATTTTT-ATTCTTTCTTCTT
* *
45169721 TTTTTTCTTTTTTTTCTTTCTTCTT
1 TTTTTTATTTTTATTCTTTCTTCTT
*
45169746 TTTTTT-TCTTCTTCTTCTTT-TTCTT
1 TTTTTTAT-TT-TTATTCTTTCTTCTT
* * * *
45169771 CTTCTTCTTTCT-TTCTTTCTTCTT
1 TTTTTTATTTTTATTCTTTCTTCTT
45169795 CTTCAAAACC
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
23 8 0.13
24 20 0.33
25 24 0.39
26 9 0.15
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (25 bp):
TTTTTTATTTTTATTCTTTCTTCTT
Found at i:45169731 original size:15 final size:15
Alignment explanation
Indices: 45169712--45169794 Score: 76
Period size: 15 Copynumber: 5.1 Consensus size: 15
45169702 AATTTTTAAT
*
45169712 TTTTTTCTTTTTTTTC
1 TTTTTT-TTCTTTTTC
45169728 TTTTTTTTCTTTCTTC
1 TTTTTTTTCTTT-TTC
*
45169744 TTTTTTTTTCTTCTTC
1 -TTTTTTTTCTTTTTC
* *
45169760 TTCTTTTTCTTCTTC
1 TTTTTTTTCTTTTTC
45169775 TTCTTTCTTTCTTTCTTC
1 TT-TTT-TTTCTTT-TTC
45169793 TT
1 TT
45169795 CTTCAAAACC
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
15 21 0.37
16 14 0.25
17 17 0.30
18 5 0.09
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTTTTCTTTTTC
Found at i:45169757 original size:3 final size:3
Alignment explanation
Indices: 45169738--45169798 Score: 63
Period size: 3 Copynumber: 20.0 Consensus size: 3
45169728 TTTTTTTTCT
* *
45169738 TTC TTC TT- TT- TTT TTC TTC TTC TTC TTT TTC TTC TTC TTC TTTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC
45169782 TTTC TTTC TTC TTC TTC
1 -TTC -TTC TTC TTC TTC
45169799 AAAACCCTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
2 4 0.08
3 38 0.72
4 11 0.21
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (3 bp):
TTC
Found at i:45169795 original size:18 final size:17
Alignment explanation
Indices: 45169725--45169797 Score: 100
Period size: 15 Copynumber: 4.5 Consensus size: 17
45169715 TTTCTTTTTT
45169725 TTCTT-TTTTTTCTTTC
1 TTCTTCTTTTTTCTTTC
*
45169741 TTCTTTTTTTTTC-TTC
1 TTCTTCTTTTTTCTTTC
45169757 TTCTTC-TTTTTC-TTC
1 TTCTTCTTTTTTCTTTC
45169772 TTCTTCTTTCTTTCTTTC
1 TTCTTCTTT-TTTCTTTC
45169790 TTCTTCTT
1 TTCTTCTT
45169798 CAAAACCCTA
Statistics
Matches: 52, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
15 15 0.29
16 15 0.29
17 11 0.21
18 11 0.21
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (17 bp):
TTCTTCTTTTTTCTTTC
Found at i:45170223 original size:29 final size:29
Alignment explanation
Indices: 45170154--45170312 Score: 149
Period size: 29 Copynumber: 5.4 Consensus size: 29
45170144 ATTCTGAGGC
*
45170154 CAAAATATAATTTCGAGAAAATTTAGGGGT
1 CAAAATATAATTTC-AAAAAATTTAGGGGT
* * * * * *
45170184 CCAAATGTAATTTCTAAAATTTTATGGAT
1 CAAAATATAATTTCAAAAAATTTAGGGGT
** *
45170213 CAAAATATAATTT-AAAAAGGTTAGGAGT
1 CAAAATATAATTTCAAAAAATTTAGGGGT
* * *
45170241 CAAAATAAAATTTTAGGAAAATTTAGGGGT
1 CAAAATATAATTTCA-AAAAATTTAGGGGT
* *
45170271 CAAAATGTAATTTCAAAAAGTTTAGGGGT
1 CAAAATATAATTTCAAAAAATTTAGGGGT
*
45170300 CAAAATGTAATTT
1 CAAAATATAATTT
45170313 TGAATTTTTT
Statistics
Matches: 102, Mismatches: 25, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
28 21 0.21
29 47 0.46
30 34 0.33
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.33
Consensus pattern (29 bp):
CAAAATATAATTTCAAAAAATTTAGGGGT
Found at i:45170253 original size:87 final size:87
Alignment explanation
Indices: 45170154--45170312 Score: 230
Period size: 87 Copynumber: 1.8 Consensus size: 87
45170144 ATTCTGAGGC
* * * * *
45170154 CAAAATATAATTTCGA-GAAAATTTAGGGGTCCAAATGTAATTTCTAAAATTTTATGGATCAAAA
1 CAAAATAAAATTT-GAGGAAAATTTAGGGGTCAAAATGTAATTTCAAAAAGTTTAGGGATCAAAA
45170218 TATAATTTAAAAAGGTTAGGAGT
65 TATAATTTAAAAAGGTTAGGAGT
* *
45170241 CAAAATAAAATTTTAGGAAAATTTAGGGGTCAAAATGTAATTTCAAAAAGTTTAGGGGTCAAAAT
1 CAAAATAAAATTTGAGGAAAATTTAGGGGTCAAAATGTAATTTCAAAAAGTTTAGGGATCAAAAT
*
45170306 GTAATTT
66 ATAATTT
45170313 TGAATTTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
86 1 0.02
87 62 0.98
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.33
Consensus pattern (87 bp):
CAAAATAAAATTTGAGGAAAATTTAGGGGTCAAAATGTAATTTCAAAAAGTTTAGGGATCAAAAT
ATAATTTAAAAAGGTTAGGAGT
Found at i:45170312 original size:59 final size:57
Alignment explanation
Indices: 45170154--45170313 Score: 180
Period size: 59 Copynumber: 2.8 Consensus size: 57
45170144 ATTCTGAGGC
* * *
45170154 CAAAATATAATTTCGAGAAAA-TTTAGGGGTCCAAATGTAATTTCTAAAATTTTATGGAT
1 CAAAATATAATTTC-A-AAAAGTTTAGGGGTCAAAATGTAATTT-TAAAAATTTAGGGAT
* * ** *
45170213 CAAAATATAATTT-AAAAAGGTTAGGAGTCAAAATAAAATTTTAGGAAAATTTAGGGGT
1 CAAAATATAATTTCAAAAAGTTTAGGGGTCAAAATGTAATTTTA--AAAATTTAGGGAT
*
45170271 CAAAATGTAATTTCAAAAAGTTTAGGGGTCAAAATGTAATTTT
1 CAAAATATAATTTCAAAAAGTTTAGGGGTCAAAATGTAATTTT
45170314 GAATTTTTTT
Statistics
Matches: 84, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
56 6 0.07
57 18 0.21
58 22 0.26
59 38 0.45
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.33
Consensus pattern (57 bp):
CAAAATATAATTTCAAAAAGTTTAGGGGTCAAAATGTAATTTTAAAAATTTAGGGAT
Found at i:45170348 original size:12 final size:10
Alignment explanation
Indices: 45170310--45170343 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
45170300 CAAAATGTAA
45170310 TTTTGAATTT
1 TTTTGAATTT
45170320 TTTTGAATTT
1 TTTTGAATTT
45170330 TTTTGAATTT
1 TTTTGAATTT
45170340 TTTT
1 TTTT
45170344 TTGAAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.74
Consensus pattern (10 bp):
TTTTGAATTT
Found at i:45174148 original size:48 final size:48
Alignment explanation
Indices: 45174077--45174170 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
45174067 AAAAACAATG
* * *
45174077 TTGTTAGAGAGATAACTATGAATCCTAAATATCATTTAGCACATGATA
1 TTGTTACAGAGATAACTATGAATCCTAAACATCATTAAGCACATGATA
*
45174125 TTGTTACAGAGATAACTATGAATCCTGAACATCATTAAGCACATGA
1 TTGTTACAGAGATAACTATGAATCCTAAACATCATTAAGCACATGA
45174171 CTAATACCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (48 bp):
TTGTTACAGAGATAACTATGAATCCTAAACATCATTAAGCACATGATA
Found at i:45175100 original size:6 final size:6
Alignment explanation
Indices: 45175084--45175123 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
45175074 GTTTATCTTA
*
45175084 TTTTA- TTTTAT TTTTAT TTTTAT TTTTAT CTTTTCT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT -TTTTAT TTTT
45175124 GAACCCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
5 5 0.16
6 22 0.69
7 5 0.16
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:45176164 original size:24 final size:24
Alignment explanation
Indices: 45176112--45176165 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
45176102 CATTTTTATA
*
45176112 ATATATATATATGTCTATAAATTT
1 ATATATATATATGTCTATAAATTC
*
45176136 TTATATATATATGTAC-AT-AATTAC
1 ATATATATATATGT-CTATAAATT-C
45176160 ATATAT
1 ATATAT
45176166 TATTTATACT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 4 0.16
24 20 0.80
25 1 0.04
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.48
Consensus pattern (24 bp):
ATATATATATATGTCTATAAATTC
Found at i:45176270 original size:16 final size:17
Alignment explanation
Indices: 45176249--45176305 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 17
45176239 TATATATACA
*
45176249 TATATACGTTTAT-ATT
1 TATATACATTTATCATT
* *
45176265 TTTATA-TTTTATCATT
1 TATATACATTTATCATT
*
45176281 TATATACATTTATGTATT
1 TATATACATTTAT-CATT
45176299 TATATAC
1 TATATAC
45176306 GCATTTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
15 5 0.15
16 13 0.39
17 5 0.15
18 10 0.30
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.58
Consensus pattern (17 bp):
TATATACATTTATCATT
Found at i:45176415 original size:35 final size:33
Alignment explanation
Indices: 45176348--45176424 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 33
45176338 TATGTATCCC
45176348 TTTTATAAATATACATACACGTACATAATTTTTA
1 TTTTATAAATATACATACAC-TACATAATTTTTA
* *
45176382 TTTATATAAATATATATACA-TACTTATATTTTTTA
1 TTT-TATAAATATACATACACTAC--ATAATTTTTA
45176417 TTTTATAA
1 TTTTATAA
45176425 TTTTCATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
33 3 0.08
34 8 0.21
35 27 0.71
ACGTcount: A:0.40, C:0.08, G:0.01, T:0.51
Consensus pattern (33 bp):
TTTTATAAATATACATACACTACATAATTTTTA
Found at i:45176591 original size:120 final size:120
Alignment explanation
Indices: 45176456--45176698 Score: 459
Period size: 120 Copynumber: 2.0 Consensus size: 120
45176446 TCATATCATT
*
45176456 TATATATATACCTACATATTTTTAGATATATACATACTTATGTTTTTCTACGCTTTATAATTTGT
1 TATATATATACCTACATATTTTTAGATATATACATACTTAAGTTTTTCTACGCTTTATAATTTGT
*
45176521 ATATATATATACAGTCACATATTTTGTAATCTATAACTTAAACATATTGATGTAC
66 ATATATATATACAGTCACATATTTTATAATCTATAACTTAAACATATTGATGTAC
45176576 TATATATATACCTACATATTTTTAGATATATACATACTTAAGTTTTTCTACGCTTTATAATTTGT
1 TATATATATACCTACATATTTTTAGATATATACATACTTAAGTTTTTCTACGCTTTATAATTTGT
*
45176641 ATATATATATACATTCACATATTTTATAATCTATAACTTAAACATATTGATGTAC
66 ATATATATATACAGTCACATATTTTATAATCTATAACTTAAACATATTGATGTAC
45176696 TAT
1 TAT
45176699 TCGTATTGTT
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (120 bp):
TATATATATACCTACATATTTTTAGATATATACATACTTAAGTTTTTCTACGCTTTATAATTTGT
ATATATATATACAGTCACATATTTTATAATCTATAACTTAAACATATTGATGTAC
Found at i:45188746 original size:49 final size:49
Alignment explanation
Indices: 45188673--45188788 Score: 196
Period size: 49 Copynumber: 2.4 Consensus size: 49
45188663 GAGCCATAAG
45188673 TTTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACCGACTACAAA
1 TTTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACCGACTACAAA
* *
45188722 TTTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGACCGGCTACAAA
1 TTTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACCGACTACAAA
* *
45188771 TCTTATTTCCCTGAAGTT
1 TTTTATCTCCCTGAAGTT
45188789 AGGTATTAGC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 63 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (49 bp):
TTTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGACCGACTACAAA
Found at i:45190676 original size:30 final size:31
Alignment explanation
Indices: 45190631--45190700 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
45190621 TTATACATAC
* *
45190631 ATATATATACCTATATCCATC-ATACATTTTT
1 ATATATATA-CTATATACATCTATAAATTTTT
*
45190662 ATAATATATA-TATATACGTCTATAAATTTTT
1 AT-ATATATACTATATACATCTATAAATTTTT
45190693 ATATATAT
1 ATATATAT
45190701 GTACATAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 14 0.41
31 13 0.38
32 7 0.21
ACGTcount: A:0.40, C:0.11, G:0.01, T:0.47
Consensus pattern (31 bp):
ATATATATACTATATACATCTATAAATTTTT
Found at i:45190953 original size:35 final size:33
Alignment explanation
Indices: 45190900--45190976 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 33
45190890 CATGTATCCC
45190900 TTTTATAAATATACATACACGTAC-ATATTTTTTA
1 TTTTATAAATATACATACA--TACTATATTTTTTA
*
45190934 TTTATATAAATATATATACATACTTATATTTTTTA
1 TTT-TATAAATATACATACATAC-TATATTTTTTA
45190969 TTTTATAA
1 TTTTATAA
45190977 TTTTCATATA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
33 3 0.08
34 8 0.21
35 28 0.72
ACGTcount: A:0.39, C:0.08, G:0.01, T:0.52
Consensus pattern (33 bp):
TTTTATAAATATACATACATACTATATTTTTTA
Found at i:45192558 original size:24 final size:23
Alignment explanation
Indices: 45192531--45192599 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 23
45192521 TAATTTTCAT
*
45192531 ATATATATATATACCTTATTATAA
1 ATATAT-TATATATCTTATTATAA
* *
45192555 ATATCTT-TATATCTTATTATAT
1 ATATATTATATATCTTATTATAA
*
45192577 ATATATCTATATATCTTTTTATA
1 ATATAT-TATATATCTTATTATA
45192600 GACACGTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
22 18 0.47
23 2 0.05
24 18 0.47
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.54
Consensus pattern (23 bp):
ATATATTATATATCTTATTATAA
Found at i:45192565 original size:22 final size:24
Alignment explanation
Indices: 45192529--45192599 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
45192519 TTTAATTTTC
* *
45192529 ATATATATATATATACCTTATTAT
1 ATATATATCTATATATCTTATTAT
*
45192553 A-A-ATATCTTTATATCTTATTAT
1 ATATATATCTATATATCTTATTAT
*
45192575 ATATATATCTATATATCTTTTTAT
1 ATATATATCTATATATCTTATTAT
45192599 A
1 A
45192600 GACACGTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 18 0.45
23 2 0.05
24 20 0.50
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATATATCTATATATCTTATTAT
Found at i:45192750 original size:30 final size:29
Alignment explanation
Indices: 45192715--45192773 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
45192705 TTTTATATAT
*
45192715 ATATACATACTTACACTGTTTTATTTTATG
1 ATATACATACTTACA-TCTTTTATTTTATG
*
45192745 ATATACATACTTATATCTTTTATTTTATG
1 ATATACATACTTACATCTTTTATTTTATG
45192774 TAATATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.31, C:0.12, G:0.05, T:0.53
Consensus pattern (29 bp):
ATATACATACTTACATCTTTTATTTTATG
Found at i:45194745 original size:19 final size:19
Alignment explanation
Indices: 45194705--45194747 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
45194695 ATCTCTTTAG
* *
45194705 GCATTCATTTCATGCATGT
1 GCATTCATTGCATGCATAT
45194724 GCATTGCATTGCAT-CATAT
1 GCATT-CATTGCATGCATAT
45194743 GCATT
1 GCATT
45194748 AGATTTTCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (19 bp):
GCATTCATTGCATGCATAT
Found at i:45196969 original size:6 final size:7
Alignment explanation
Indices: 45196916--45196966 Score: 81
Period size: 7 Copynumber: 7.7 Consensus size: 7
45196906 CAAAAATAGG
45196916 AGAAA-A
1 AGAAATA
45196922 AGAAATA
1 AGAAATA
45196929 AGAAATA
1 AGAAATA
45196936 AGAAATA
1 AGAAATA
45196943 AGAAATA
1 AGAAATA
45196950 AGAAA-A
1 AGAAATA
45196956 AGAAA-A
1 AGAAATA
45196962 AGAAA
1 AGAAA
45196967 AAGGAGAGGT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.39
7 27 0.61
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (7 bp):
AGAAATA
Found at i:45198894 original size:43 final size:43
Alignment explanation
Indices: 45198761--45198896 Score: 100
Period size: 43 Copynumber: 3.2 Consensus size: 43
45198751 GATAGCAGAT
* *
45198761 CTTGCCTTCCTGCGTTAACAGCGAAGTAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCAAAAACAAAGC
* * * * * * * * *
45198804 CTTGCC-TCCAT-CGGTT-GCAGTGGACCTGGTTAAAGAAGCAGA-T
1 CTTGCCTTCC-TGC-GTTAACAGCGAAGCAGATCAAA-AA-CAAAGC
*
45198847 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCCAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCAAAAACAAAGC
45198890 CTTGCCT
1 CTTGCCT
45198897 CCATCGGTTG
Statistics
Matches: 64, Mismatches: 21, Indels: 16
0.63 0.21 0.16
Matches are distributed among these distances:
42 16 0.25
43 31 0.48
44 17 0.27
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (43 bp):
CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCAAAAACAAAGC
Found at i:45199195 original size:88 final size:88
Alignment explanation
Indices: 45198583--45199753 Score: 1347
Period size: 88 Copynumber: 13.4 Consensus size: 88
45198573 TGAATATAGT
* * * * *
45198583 AGATCTTGCCTTCCTGCGTTAACAGTGAAGTAGATCGAA-AGTA-AAGCCTTGCCTC-CATCGGT
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGA-CACAAACCTTGCCTCTC-TCGGT
*
45198645 TGCAGTGGAGCTGGTTGAAGACAAC
64 TGTAGTGGAGCTGGTTGAAGACAAC
** * * *
45198670 AGATCTTGCCTTCCTGTATTGATAGCAAAGCAGATCGAA-A-ACAAAGCCTTGCCTC-CATCGGT
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTC-TCGGT
* * * *
45198732 TGCAGTGGAGCTGGTTAAAGATAGC
64 TGTAGTGGAGCTGGTTGAAGACAAC
* *
45198757 AGATCTTGCCTTCCTGCGTTAACAGCGAAGTAGATCGAA-A-ACAAAGCCTTGCCTC-CATCGGT
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTC-TCGGT
* * * *
45198819 TGCAGTGGACCTGGTTAAAGA-AGC
64 TGTAGTGGAGCTGGTTGAAGACAAC
* *
45198843 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCCAA-A-ACAAAGCCTTGCCTC-CATCGGT
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTC-TCGGT
* * **
45198905 TGTAGTGGAGCTGGTTAAAGATAGT
64 TGTAGTGGAGCTGGTTGAAGACAAC
* * * * *
45198930 AGATTTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAATA-AAACCTTGCCTC-CTTCGGTT
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTC-TCGGTT
* * *
45198993 GCAGTGGAGCTGGTTGAAGATAGC
65 GTAGTGGAGCTGGTTGAAGACAAC
* * * *
45199017 AAATTTTGCCTTCCTGCATTAATAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTC-CATCGGT
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTC-TCGGT
* * *
45199079 TGTAGTGGAGCTGGTTAAAGATAGC
64 TGTAGTGGAGCTGGTTGAAGACAAC
* * * *
45199104 AGATCTTGCCTTCTTGCGTTAACAGCGAAGTAGATCGAAGACACAAACATTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
45199169 TAGTGGAGCTGGTTGAAGACAAC
66 TAGTGGAGCTGGTTGAAGACAAC
* * * * *
45199192 AGATTTTGCCTTCCTACCTTGATAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTG
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
45199257 TAGTGGAGCTGGTTGAAGACAAC
66 TAGTGGAGCTGGTTGAAGACAAC
* * *
45199280 AGATTTTGCCTTCCTGCCTTGACAACGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
45199345 TAGTGGAGCTGGTTGAAGACAAC
66 TAGTGGAGCTGGTTGAAGACAAC
* * * *
45199368 AGATCTTGCCTTCTTACCTTGACAGTGAAGCA-ATTCGAAGACACAAACCTTGCCTCTCTCGGTT
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGA-TCGAAGACACAAACCTTGCCTCTCTCGGTT
*
45199432 GTAGTGGAGCTGGTTGAAGACAAT
65 GTAGTGGAGCTGGTTGAAGACAAC
* * * * *
45199456 AGATCTTGCCTTCCTGCCTTGACAGTGAAGCAGATGGAAGACGCAAACCTTGCCTCTCTCGATTG
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
* *
45199521 TAGTAGAGCTAGTTGAAGACAAC
66 TAGTGGAGCTGGTTGAAGACAAC
* * *
45199544 AGATCTTGCCTTCCTGCCTTGATAGCGAAGCAGATCAAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
* * *
45199609 TAGCGGAACTGGTTGAAGATAAC
66 TAGTGGAGCTGGTTGAAGACAAC
* * * * *
45199632 AGATCTTGCCTTCCTACATTAACAGCGAAACAGGTCAAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
**
45199697 TAGCAGAGCTGGTTGAAGACAAC
66 TAGTGGAGCTGGTTGAAGACAAC
* * *
45199720 AAATCTTGCCTTCCTGCATTGACAGC-AGAGCAGA
1 AGATCTTGCCTTCCTGCCTTAACAGCGA-AGCAGA
45199754 CTGAAGATAG
Statistics
Matches: 972, Mismatches: 99, Indels: 25
0.89 0.09 0.02
Matches are distributed among these distances:
85 2 0.00
86 88 0.09
87 330 0.34
88 544 0.56
89 8 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.25
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCCTTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
TAGTGGAGCTGGTTGAAGACAAC
Found at i:45199640 original size:44 final size:43
Alignment explanation
Indices: 45199140--45199730 Score: 117
Period size: 44 Copynumber: 13.4 Consensus size: 43
45199130 GAAGTAGATC
* * *
45199140 GAAGACACAAA-CATTGCCTCTCTCGGTTGTAGTGGAGCTGGTT
1 GAAGAAACAAATC-TTGCCTCTCTCGGTTGTAGCGGAACTGGTT
* * * * * *
45199183 GAAGACAACAGATTTTGCCT-TCCTAC-CTTGATAGC-GAAGCAGATC
1 GAAGA-AACAAATCTTGCCTCT-CT-CGGTTG-TAGCGGAA-CTGGTT
* * * * *
45199228 GAAGACACAAACCTTGCCTCTCTCAGTTGTAGTGGAGCTGGTT
1 GAAGAAACAAATCTTGCCTCTCTCGGTTGTAGCGGAACTGGTT
* * * * * * * *
45199271 GAAGACAACAGATTTTGCCT-TC-CTGCCTTGACAAC-GAAGCAGATC
1 GAAGA-AACAAATCTTGCCTCTCTC-G-GTTG-TAGCGGAA-CTGGTT
* * * *
45199316 GAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTT
1 GAAGAAACAAATCTTGCCTCTCTCGGTTGTAGCGGAACTGGTT
* * **
45199359 GAAGACAACAGATCTTGCCT-TCTTAC-CTTG-A-CAGTGAAGC-AATT
1 GAAGA-AACAAATCTTGCCTCTC-T-CGGTTGTAGC-G-GAA-CTGGTT
* * * *
45199403 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTT
1 -GAAGAAACAAATCTTGCCTCTCTCGGTTGTAGCGGAACTGGTT
* * * * * *
45199447 GAAGACAATAGATCTTGCCT-TC-CTGCCTTG-A-CAGTGAAGCAGATG
1 GAAGA-AACAAATCTTGCCTCTCTC-G-GTTGTAGC-G-GAA-CTGGTT
** * * ** * *
45199492 GAAGACGCAAACCTTGCCTCTCTCGATTGTAGTAGAGCTAGTT
1 GAAGAAACAAATCTTGCCTCTCTCGGTTGTAGCGGAACTGGTT
* * * * *
45199535 GAAGACAACAGATCTTGCCT-TC-CTGCCTTGATAGC-GAAGCAGATC
1 GAAGA-AACAAATCTTGCCTCTCTC-G-GTTG-TAGCGGAA-CTGGTT
* * *
45199580 AAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAACTGGTT
1 GAAGAAACAAATCTTGCCTCTCTCGGTTGTAGCGGAACTGGTT
* * ** * * *
45199623 GAAGATAACAGATCTTGCCT-TCCTAC-ATTAACAGCGAAACAGGTC
1 GAAGA-AACAAATCTTGCCTCT-CT-CGGTT-GTAGCGGAACTGGTT
* * * * *
45199668 AAAGACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTT
1 GAAGAAACAAATCTTGCCTCTCTCGGTTGTAGCGGAACTGGTT
45199711 GAAGACAACAAATCTTGCCT
1 GAAGA-AACAAATCTTGCCT
45199731 TCCTGCATTG
Statistics
Matches: 367, Mismatches: 127, Indels: 107
0.61 0.21 0.18
Matches are distributed among these distances:
42 3 0.01
43 80 0.22
44 205 0.56
45 76 0.21
46 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (43 bp):
GAAGAAACAAATCTTGCCTCTCTCGGTTGTAGCGGAACTGGTT
Found at i:45199759 original size:45 final size:45
Alignment explanation
Indices: 45199710--45199798 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
45199700 CAGAGCTGGT
* *
45199710 TGAAGACAACAAATCTTGCCTTCCTGCATTGACAGCAGAGCAGAC
1 TGAAGACAACAAATCTTGCCTTCCTGCACTGACAGCAAAGCAGAC
* ** * * *
45199755 TGAAGATAGTAGATCTTGCCTTCCTGTACTGACGGCAAAGCAGA
1 TGAAGACAACAAATCTTGCCTTCCTGCACTGACAGCAAAGCAGA
45199799 TCGAAAACAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (45 bp):
TGAAGACAACAAATCTTGCCTTCCTGCACTGACAGCAAAGCAGAC
Found at i:45199862 original size:62 final size:62
Alignment explanation
Indices: 45199748--45199865 Score: 155
Period size: 62 Copynumber: 1.9 Consensus size: 62
45199738 TTGACAGCAG
* ** *
45199748 AGCAGACTGAAGATAGTAGATCTTGCCTTCCTGTACTGACGGCAAAGCAGATCGAAAACACC
1 AGCAGACTGAAGATAGCAGATCCCGCCTTCCTGTACTGACAGCAAAGCAGATCGAAAACACC
* * ** *
45199810 AGCAGACTGAAGGTAGCAGATCCCGCCTTCTTGTACTGACAGTGAAGTAGATCGAA
1 AGCAGACTGAAGATAGCAGATCCCGCCTTCCTGTACTGACAGCAAAGCAGATCGAA
45199866 GACAACATAG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 47 1.00
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (62 bp):
AGCAGACTGAAGATAGCAGATCCCGCCTTCCTGTACTGACAGCAAAGCAGATCGAAAACACC
Found at i:45200090 original size:95 final size:95
Alignment explanation
Indices: 45199925--45200130 Score: 306
Period size: 95 Copynumber: 2.2 Consensus size: 95
45199915 CCAAAAAGGA
* * * * *
45199925 GAAGATCAAAGATGGCAGATTTTACCTCCTTGTGACTACAGTGGAGTATATTGAAGCCTATAATT
1 GAAGATCAAAGATGGTAGATTTTACCTCCTTATGACTACAATGGAGTACATTGAAGCCGATAATT
*
45199990 CTATCTCCCTAGTTAGCAGTGGAATAGATT
66 CTATCTCCCTAGTTAGCAGTGGAATAAATT
45200020 GAAGATCAAAGATGGTAGATTTTACCT-CTCTATGACTACAATGGAGTACATTGAAGCCGATAAT
1 GAAGATCAAAGATGGTAGATTTTACCTCCT-TATGACTACAATGGAGTACATTGAAGCCGATAAT
* *
45200084 TTTATCTCCCTAGTTGGCAGTGGAATAAATT
65 TCTATCTCCCTAGTTAGCAGTGGAATAAATT
* *
45200115 AAAGATCGAAGATGGT
1 GAAGATCAAAGATGGT
45200131 GAATATTACC
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
94 2 0.02
95 98 0.98
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (95 bp):
GAAGATCAAAGATGGTAGATTTTACCTCCTTATGACTACAATGGAGTACATTGAAGCCGATAATT
CTATCTCCCTAGTTAGCAGTGGAATAAATT
Found at i:45200172 original size:95 final size:94
Alignment explanation
Indices: 45199974--45200149 Score: 221
Period size: 95 Copynumber: 1.9 Consensus size: 94
45199964 AGTGGAGTAT
* * *
45199974 ATTGAAGCCTATAATTCTATCTCCCTAGTTAGCAGTGGAATAGATTGAAGATCAAAGATGGTAGA
1 ATTGAAGCCGATAATTCTATCTCCCTAGTTAGCAGTGGAATAAATTAAAGATCAAAGATGGTAGA
* * * *
45200039 TTTTACCTCTCTATGACTACAATGGAGTAC
66 TATTACCTCTCCAAGAC-ACAATGGAGAAC
* * *
45200069 ATTGAAGCCGATAATTTTATCTCCCTAGTTGGCAGTGGAATAAATTAAAGATCGAAGATGGT-GA
1 ATTGAAGCCGATAATTCTATCTCCCTAGTTAGCAGTGGAATAAATTAAAGATCAAAGATGGTAG-
45200133 ATATTACCT-TCCCAAGA
65 ATATTACCTCT-CCAAGA
45200150 AAGTGGAGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
94 2 0.03
95 68 0.97
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (94 bp):
ATTGAAGCCGATAATTCTATCTCCCTAGTTAGCAGTGGAATAAATTAAAGATCAAAGATGGTAGA
TATTACCTCTCCAAGACACAATGGAGAAC
Found at i:45200368 original size:132 final size:132
Alignment explanation
Indices: 45200117--45200388 Score: 400
Period size: 132 Copynumber: 2.1 Consensus size: 132
45200107 AATAAATTAA
* * *
45200117 AGATCGAAGATGGTGAATATTACCTTCCCAAGAAAGTGGAGAAGCAGATTTAAGCCATTAGTCCT
1 AGATCAAAGATGATGAATATTACCTTCCCAAGAAAGTGAAGAAGCAGATTTAAGCCATTAGTCCT
* * * *
45200182 ATCCCCCTAAACAGTAGTGGAATAGGTCGAAGATTGCAGATTCTATCCCCCTAAGCAGTAGTGGA
66 ATCCCCCTAAACAGTAGTAGAATAGGTCAAAGATTGCAGACTCTATCCCCCTAAGCAATAGTGGA
45200247 GC
131 GC
* ** * *
45200249 AGATCAAAGATGATGAATCTTATTTTCCCAAGATAGTGAAGAAGTAGATTTAAGCCATTAGTCCT
1 AGATCAAAGATGATGAATATTACCTTCCCAAGAAAGTGAAGAAGCAGATTTAAGCCATTAGTCCT
* * * *
45200314 ATCTCCCTAAGCAGTAGTAGAATAGGTCAAAGATTGCAGACTCTGTCCCTCTAAGCAATAGTGGA
66 ATCCCCCTAAACAGTAGTAGAATAGGTCAAAGATTGCAGACTCTATCCCCCTAAGCAATAGTGGA
45200379 GC
131 GC
45200381 AGATCAAA
1 AGATCAAA
45200389 TATATGGAAC
Statistics
Matches: 124, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
132 124 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (132 bp):
AGATCAAAGATGATGAATATTACCTTCCCAAGAAAGTGAAGAAGCAGATTTAAGCCATTAGTCCT
ATCCCCCTAAACAGTAGTAGAATAGGTCAAAGATTGCAGACTCTATCCCCCTAAGCAATAGTGGA
GC
Found at i:45202192 original size:22 final size:24
Alignment explanation
Indices: 45202153--45202221 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
45202143 TTTAATTTTC
* * *
45202153 ATATATATATACACCTTATTATA-
1 ATATATCTATATATCTTATTATAT
*
45202176 A-ATATCTTTATATCTTATTATAT
1 ATATATCTATATATCTTATTATAT
*
45202199 ATATATCTATATATCTTTTTATA
1 ATATATCTATATATCTTATTATA
45202222 GACACGTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
22 17 0.45
23 2 0.05
24 19 0.50
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (24 bp):
ATATATCTATATATCTTATTATAT
Found at i:45202372 original size:30 final size:29
Alignment explanation
Indices: 45202337--45202395 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
45202327 TTTTATATAT
*
45202337 ATATACATACTTACACTGTTTTATTTTATG
1 ATATACATACTTACA-TCTTTTATTTTATG
*
45202367 ATATACATACTTATATCTTTTATTTTATG
1 ATATACATACTTACATCTTTTATTTTATG
45202396 TAATATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 13 0.48
30 14 0.52
ACGTcount: A:0.31, C:0.12, G:0.05, T:0.53
Consensus pattern (29 bp):
ATATACATACTTACATCTTTTATTTTATG
Found at i:45206731 original size:109 final size:109
Alignment explanation
Indices: 45206420--45206935 Score: 749
Period size: 109 Copynumber: 4.7 Consensus size: 109
45206410 ATTTGGTTAG
* * *
45206420 ACGAGAAATCGAAACCCAGCACCTTAGAGCACGTTTCTCGAATTTCCAAACGCAAAACATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
*
45206485 TATTTTG-AAATTTTTGAAAAGGATACTT-AG-CTATTTGGTTGA
66 TATTTTGAAAATTTTTGAAAAGGATA-TTAAGTCTATTTGGTCGA
* * * *
45206527 ACGAGAAAAATCGACACCCAGTACCTTAGGGCATGTTTTCTCGAATTTCCAAACGGAAAACATTG
1 ACGAG--AAATCGAAACCCAGTACCTTAGGGCACG-TTCCTCGAATTTCCAAACGCAAAACATTG
* *
45206592 CCTTATTTTGAAATTTTTTGAAAAAGATATTAAGTC-ATTTGGTCGA
63 CCTTATTTTGAAAATTTTTGAAAAGGATATTAAGTCTATTTGGTCGA
45206638 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
* *
45206703 TATTTTTGAAAAGTTTTT-AAAAGGATATTTA-CCTATTTGGTCGA
66 TA-TTTTGAAAA-TTTTTGAAAAGGATATTAAGTCTATTTGGTCGA
* *
45206747 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCAAAACGCAAAATATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
*
45206812 TATTTTGAAAATTTTTGAAAAGAATATTAAGTC-ATTTGGTCGA
66 TATTTTGAAAATTTTTGAAAAGGATATTAAGTCTATTTGGTCGA
* * *
45206855 ACGAGATATCGAAACCCAGTACCTTAGGGCACATTCCTCGAATTTCCAAACGCAAAATATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
*
45206920 TAATTTGAAATATTTT
66 TATTTTGAAA-ATTTT
45206936 CCTTTTTTGA
Statistics
Matches: 372, Mismatches: 25, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
107 10 0.03
108 134 0.36
109 150 0.40
110 45 0.12
111 32 0.09
112 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (109 bp):
ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
TATTTTGAAAATTTTTGAAAAGGATATTAAGTCTATTTGGTCGA
Found at i:45206880 original size:217 final size:218
Alignment explanation
Indices: 45206420--45206935 Score: 799
Period size: 217 Copynumber: 2.4 Consensus size: 218
45206410 ATTTGGTTAG
* * *
45206420 ACGAGAAATCGAAACCCAGCACCTTAGAGCACGTTTCTCGAATTTCCAAACGCAAAACATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
* * *
45206485 TATTTTG-AAATTTTTGAAAAGGATACTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGT
66 TATTTTGAAAATTTTTGAAAAGGATACTTACCTATTTGGTCGAACGAG-AAAATCGAAACCCAGT
* * * * *
45206549 ACCTTAGGGCATGTTTTCTCGAATTTCCAAACGGAAAACATTGCCTTATTTTGAAATTTTTTGAA
130 ACCTTAGGGCACGTTTCCTCGAATTTCAAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGAA
45206614 AAAGATATTAAGTCATTTGGTCGA
195 AAAGATATTAAGTCATTTGGTCGA
45206638 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
*
45206703 TATTTTTGAAAAGTTTTT-AAAAGGATATTTACCTATTTGGTCGAACGAG-AAATCGAAACCCAG
66 TA-TTTTGAAAA-TTTTTGAAAAGGATACTTACCTATTTGGTCGAACGAGAAAATCGAAACCCAG
*
45206766 TACCTTAGGGCACG-TTCCTCGAATTTCAAAACGCAAAATATTGCCTTATTTTGAAAATTTTTG-
129 TACCTTAGGGCACGTTTCCTCGAATTTCAAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGA
45206829 AAAAGAATATTAAGTCATTTGGTCGA
194 AAAAG-ATATTAAGTCATTTGGTCGA
* * *
45206855 ACGAGATATCGAAACCCAGTACCTTAGGGCACATTCCTCGAATTTCCAAACGCAAAATATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
*
45206920 TAATTTGAAATATTTT
66 TATTTTGAAA-ATTTT
45206936 CCTTTTTTGA
Statistics
Matches: 276, Mismatches: 17, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
216 16 0.06
217 129 0.47
218 90 0.33
219 5 0.02
220 31 0.11
221 5 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (218 bp):
ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
TATTTTGAAAATTTTTGAAAAGGATACTTACCTATTTGGTCGAACGAGAAAATCGAAACCCAGTA
CCTTAGGGCACGTTTCCTCGAATTTCAAAACGCAAAACATTGCCTTATTTTGAAAATTTTTGAAA
AAGATATTAAGTCATTTGGTCGA
Found at i:45207381 original size:3 final size:3
Alignment explanation
Indices: 45207360--45207408 Score: 62
Period size: 3 Copynumber: 16.0 Consensus size: 3
45207350 TAAAATTACT
* * *
45207360 TAA TAA TTAT TAA TGA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
45207406 TAA
1 TAA
45207409 AAAGTTAACA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 37 0.95
4 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:45209263 original size:95 final size:94
Alignment explanation
Indices: 45209092--45209270 Score: 295
Period size: 95 Copynumber: 1.9 Consensus size: 94
45209082 AAGATATGAA
*
45209092 ATCTTCAATCTATTCCACTGCCAACCAAGGAATAGAATTATCGGCTTCAATGTACTCCACTATAG
1 ATCTTCAATCTATTCCACTGCCAACCAAGGAATAGAATTATCGGCTTCAATGTACTCCACTATAA
* *
45209157 TCATAGTGAGGTAAAATCTGCCATCTTCG
66 TCACAGGGAGGTAAAATCTGCCATCTTCG
* * *
45209186 ATCTTCAATCTATTCCACTGCCAACTAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAAGGA-ATAGAATTATCGGCTTCAATGTACTCCACTATA
45209251 ATCACAGGGAGGTAAAATCT
65 ATCACAGGGAGGTAAAATCT
45209271 AAAATTCTTT
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
94 29 0.37
95 49 0.63
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (94 bp):
ATCTTCAATCTATTCCACTGCCAACCAAGGAATAGAATTATCGGCTTCAATGTACTCCACTATAA
TCACAGGGAGGTAAAATCTGCCATCTTCG
Found at i:45209527 original size:44 final size:44
Alignment explanation
Indices: 45209477--45209879 Score: 152
Period size: 44 Copynumber: 9.2 Consensus size: 44
45209467 CAACCGAGAG
*
45209477 AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTTAATGCGGGA
1 AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTCAATGCGGGA
* * * * ** *
45209521 AGGCAAGATCTTTTGTCTTCAACC-AGC-TC-C-ATCACAACCGAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTA-CTTCGCTGTCA-ATGCGGGA
* * *
45209564 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGAA
1 -AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTCAATGCGGGA
* * * * ** * *
45209609 AGGCAAGATCTTTTGTCTTCAACC-AGCTCCG-TCACAACTGAGAG-
1 AGGCAAGGT-TTGTGTCTTCGACCTA-CTTCGCTGTCAA-TGCGGGA
* * * *
45209653 AGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCATTGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTCAATGCGGGA
* * * * ** *
45209697 AGGCAAGATCTTTTGTCTTCAACC-AGC-TC-C-ATCACAACCGAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTA-CTTCGCTGTCA-ATGCGGGA
* * * *
45209740 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGAA
1 -AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTCAATGCGGGA
* * * * ** **
45209785 AGGCAAGATCTTTTGTCTTCAACC-AGC-TC-C-ATCACAACCAAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTA-CTTCGCTGTCA-ATGCGGGA
* * * *
45209828 GAGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCACTGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTCAATGCGGGA
45209873 AGGCAAG
1 AGGCAAG
45209880 ATCTGTTATC
Statistics
Matches: 246, Mismatches: 83, Indels: 60
0.63 0.21 0.15
Matches are distributed among these distances:
42 8 0.03
43 70 0.28
44 91 0.37
45 68 0.28
46 9 0.04
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.28
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTCAATGCGGGA
Found at i:45209566 original size:88 final size:88
Alignment explanation
Indices: 45209459--45209926 Score: 776
Period size: 88 Copynumber: 5.3 Consensus size: 88
45209449 CTTCAATCTA
* * * *
45209459 CTCCGTCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTTAATGCGGGAAGG
1 CTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGG
45209524 CAAGATCTTTTGTCTTCAACCAG
66 CAAGATCTTTTGTCTTCAACCAG
*
45209547 CTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGAAAGG
1 CTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGG
45209612 CAAGATCTTTTGTCTTCAACCAG
66 CAAGATCTTTTGTCTTCAACCAG
* * * *
45209635 CTCCGTCACAACTGAGAGAGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCATTGCAGGAAGG
1 CTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGG
45209700 CAAGATCTTTTGTCTTCAACCAG
66 CAAGATCTTTTGTCTTCAACCAG
* *
45209723 CTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGTTGTCAATGCAGAAAGG
1 CTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGG
45209788 CAAGATCTTTTGTCTTCAACCAG
66 CAAGATCTTTTGTCTTCAACCAG
* * *
45209811 CTCCATCACAACCAAGAGAGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCACTGCAGGAAGG
1 CTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGG
* *
45209876 CAAGATCTGTTATCTTCAACCAG
66 CAAGATCTTTTGTCTTCAACCAG
45209899 CTCCA-CTACAACCGAGAGAGGCAAGGTT
1 CTCCATC-ACAACCGAGAGAGGCAAGGTT
45209927 GGCAACTTTA
Statistics
Matches: 355, Mismatches: 24, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
87 1 0.00
88 354 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (88 bp):
CTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGG
CAAGATCTTTTGTCTTCAACCAG
Found at i:45209921 original size:44 final size:44
Alignment explanation
Indices: 45209521--45209923 Score: 209
Period size: 44 Copynumber: 9.2 Consensus size: 44
45209511 TAATGCGGGA
*
45209521 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * * * ** * *
45209565 AGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC-TGTCAA-TGCAGAA
1 AGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG-AGAG
* * *
45209609 AGGCAAGATCTTTTGTCTTCAACCAGCTCCGTCACAACTGAGAG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * ** * * *** *
45209653 AGGCAAGGTTTG-TGTCTTTGACCTGCTTCGCTGTCATTGCAG-GA-
1 AGGCAAGATCTGTTGTCTTCAACCAGC-TC-C-ATCACAACCGAGAG
*
45209697 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * * * ** ** * *
45209741 AGGCAAGGTTTG-TGTCTTCGACCTGCTTCGTTGTCAA-TGCAGAA
1 AGGCAAGATCTGTTGTCTTCAACCAGC-TCCATCACAACCG-AGAG
* *
45209785 AGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCAAGAG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
* * ** * * ** *
45209829 AGGCAAGGTTTG-TGTCTTTGACCTGCTTCGCTGTCACTGCAG-GA-
1 AGGCAAGATCTGTTGTCTTCAACCAGC-TC-C-ATCACAACCGAGAG
*
45209873 AGGCAAGATCTGTTATCTTCAACCAGCTCCA-CTACAACCGAGAG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCCATC-ACAACCGAGAG
45209917 AGGCAAG
1 AGGCAAG
45209924 GTTGGCAACT
Statistics
Matches: 254, Mismatches: 82, Indels: 46
0.66 0.21 0.12
Matches are distributed among these distances:
41 1 0.00
42 9 0.04
43 55 0.22
44 124 0.49
45 54 0.21
46 11 0.04
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (44 bp):
AGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAG
Found at i:45211184 original size:22 final size:22
Alignment explanation
Indices: 45211159--45211209 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
45211149 TTAGCCTCTC
45211159 CATTTTT-ACTTTTTCACTTTTT
1 CATTTTTCA-TTTTTCACTTTTT
*
45211181 CATTTTTCATTTTTCATTTTTT
1 CATTTTTCATTTTTCACTTTTT
45211203 CATTTTT
1 CATTTTT
45211210 TTTGACTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (22 bp):
CATTTTTCATTTTTCACTTTTT
Found at i:45211186 original size:14 final size:14
Alignment explanation
Indices: 45211159--45211209 Score: 68
Period size: 15 Copynumber: 3.5 Consensus size: 14
45211149 TTAGCCTCTC
45211159 CATTTTT-ACTTTTT
1 CATTTTTCA-TTTTT
45211173 CACTTTTTCATTTTT
1 CA-TTTTTCATTTTT
45211188 CATTTTTCATTTTTT
1 CATTTTTCA-TTTTT
45211203 CATTTTT
1 CATTTTT
45211210 TTTGACTCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.26
15 24 0.71
16 1 0.03
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:45211210 original size:8 final size:7
Alignment explanation
Indices: 45211159--45211209 Score: 68
Period size: 7 Copynumber: 7.0 Consensus size: 7
45211149 TTAGCCTCTC
45211159 CATTTTT
1 CATTTTT
45211166 -ACTTTTT
1 CA-TTTTT
45211173 CACTTTTT
1 CA-TTTTT
45211181 CATTTTT
1 CATTTTT
45211188 CATTTTT
1 CATTTTT
45211195 CATTTTTT
1 CA-TTTTT
45211203 CATTTTT
1 CATTTTT
45211210 TTTGACTCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
6 1 0.02
7 24 0.59
8 16 0.39
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:45211211 original size:9 final size:8
Alignment explanation
Indices: 45211168--45211210 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
45211158 CCATTTTTAC
*
45211168 TTTTTCAC
1 TTTTTCAT
45211176 TTTTTCA-
1 TTTTTCAT
45211183 TTTTTCA-
1 TTTTTCAT
45211190 TTTTTCAT
1 TTTTTCAT
45211198 TTTTTCAT
1 TTTTTCAT
45211206 TTTTT
1 TTTTT
45211211 TTGACTCAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 14 0.41
8 20 0.59
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTCAT
Found at i:45212009 original size:17 final size:17
Alignment explanation
Indices: 45211987--45212019 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
45211977 TTGACCTCTC
45211987 TTTTTCTTTTTCTTCTT
1 TTTTTCTTTTTCTTCTT
*
45212004 TTTTTCTTTTTTTTCT
1 TTTTTCTTTTTCTTCT
45212020 CTTATTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTCTTTTTCTTCTT
Found at i:45212010 original size:8 final size:8
Alignment explanation
Indices: 45211987--45212016 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
45211977 TTGACCTCTC
45211987 TTTTTCTT
1 TTTTTCTT
45211995 TTTCTTCTT
1 TTT-TTCTT
45212004 TTTTTCTT
1 TTTTTCTT
45212012 TTTTT
1 TTTTT
45212017 TCTCTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTTCTT
Found at i:45212017 original size:9 final size:9
Alignment explanation
Indices: 45211987--45212019 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
45211977 TTGACCTCTC
45211987 TTTTTCTTT
1 TTTTTCTTT
*
45211996 TTCTTC-TT
1 TTTTTCTTT
45212004 TTTTTCTTT
1 TTTTTCTTT
45212013 TTTTTCT
1 TTTTTCT
45212020 CTTATTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:45213264 original size:13 final size:13
Alignment explanation
Indices: 45213246--45213271 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45213236 CCTGCATGAT
45213246 ATTCGCATTGTGC
1 ATTCGCATTGTGC
45213259 ATTCGCATTGTGC
1 ATTCGCATTGTGC
45213272 CATTTGGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (13 bp):
ATTCGCATTGTGC
Found at i:45216198 original size:18 final size:17
Alignment explanation
Indices: 45216175--45216216 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
45216165 TCCAAACGCA
45216175 AAATATTGCCTTATTTTG
1 AAATATTGCCTT-TTTTG
*
45216193 AAATATTTTCCTTTTTTG
1 AAATA-TTGCCTTTTTTG
45216211 AAATAT
1 AAATAT
45216217 GAAGTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 15 0.68
19 6 0.27
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (17 bp):
AAATATTGCCTTTTTTG
Found at i:45216665 original size:3 final size:3
Alignment explanation
Indices: 45216651--45216689 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
45216641 AATATAATGG
* *
45216651 TAA TAA TGA TAA TAA TAA TAA AAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
45216690 AGTTAACAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:45218574 original size:83 final size:82
Alignment explanation
Indices: 45218470--45218621 Score: 241
Period size: 83 Copynumber: 1.8 Consensus size: 82
45218460 TTTAGGGGCC
* * * *
45218470 TAAAGTGTAATTTTATTATATATTAATTTATAATTTTATATTTATAAGAAGACTGAATTGACAAA
1 TAAAGTGTAATTTCACTATATATTAATTTATAATTTTATATTTATAAGAAGACTAAAATGA-AAA
45218535 TTTTCTTTTGGAGGGGGT
65 TTTTCTTTTGGAGGGGGT
* *
45218553 TAAAGTGTAATTTCACTATATATTAATTTATAATTTTCTATTTATAAGAGGACTAAAATGAAAAT
1 TAAAGTGTAATTTCACTATATATTAATTTATAATTTTATATTTATAAGAAGACTAAAATGAAAAT
45218618 TTTC
66 TTTC
45218622 ATTATTGGGA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 8 0.13
83 55 0.87
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (82 bp):
TAAAGTGTAATTTCACTATATATTAATTTATAATTTTATATTTATAAGAAGACTAAAATGAAAAT
TTTCTTTTGGAGGGGGT
Found at i:45221060 original size:18 final size:19
Alignment explanation
Indices: 45221037--45221077 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
45221027 TTTAAATACA
45221037 TTTATTTTAT-TATATCAT
1 TTTATTTTATCTATATCAT
*
45221055 TTTA-TTTATCTATATCCT
1 TTTATTTTATCTATATCAT
45221073 TTTAT
1 TTTAT
45221078 ATAATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTATTTTATCTATATCAT
Found at i:45221151 original size:33 final size:33
Alignment explanation
Indices: 45221109--45221180 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
45221099 TTTATTATTG
*
45221109 TTATTATTATTATTATTATTAATACCATCATCA
1 TTATTATTATTATTATTATTAATACCATAATCA
*
45221142 TTATTATTATTATTATTATTAATACCATAATTA
1 TTATTATTATTATTATTATTAATACCATAATCA
45221175 TTATTA
1 TTATTA
45221181 AATTATTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (33 bp):
TTATTATTATTATTATTATTAATACCATAATCA
Found at i:45221174 original size:18 final size:18
Alignment explanation
Indices: 45221120--45221181 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
45221110 TATTATTATT
*
45221120 ATTATTATTAATACCATC
1 ATTATTATTAATACCATA
* * *
45221138 ATCATTATT-AT--TATT
1 ATTATTATTAATACCATA
45221153 ATTATTATTAATACCATA
1 ATTATTATTAATACCATA
45221171 ATTATTATTAA
1 ATTATTATTAA
45221182 ATTATTTTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
15 10 0.29
16 2 0.06
17 2 0.06
18 21 0.60
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTATTATTAATACCATA
Found at i:45221180 original size:3 final size:3
Alignment explanation
Indices: 45221100--45221162 Score: 72
Period size: 3 Copynumber: 21.0 Consensus size: 3
45221090 TTTAAGATTT
* * ** * *
45221100 TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA ATA CCA TCA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
45221148 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
45221163 ATACCATAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:45223503 original size:46 final size:46
Alignment explanation
Indices: 45223405--45223749 Score: 522
Period size: 46 Copynumber: 7.6 Consensus size: 46
45223395 TACGTATGAT
** * *
45223405 CACTTATCAC-TTGTC-CCTGATTAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAC
45223448 CACTTATCACTTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
45223494 CACTTATCACTTTGTCACTTGATCAGTTAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAC
*
45223540 CACTTATCACTTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAC
* * *
45223586 CACTTATCACTTTGTCACTTGATTAGATAAGTGTAGCTGAAGCTAC
1 CACTTATCACTTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAC
*
45223632 CACTTATCACTTTGTC-TCTTGATCAGATAAGTGTAGCTAAAACTAC
1 CACTTATCACTTTGTCAT-TTGATCAGATAAGTGTAGCTAAAGCTAC
45223678 CACTTATCACTTTGTC-TCTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCAT-TTGATCAGATAAGTGTAGCTAAAGCTAC
*
45223724 CACTTATCACTTTGTCA-CTGATCAGA
1 CACTTATCACTTTGTCATTTGATCAGA
45223750 AGTACTCAAA
Statistics
Matches: 278, Mismatches: 19, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
43 10 0.04
44 5 0.02
45 26 0.09
46 237 0.85
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCATTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:45225251 original size:3 final size:3
Alignment explanation
Indices: 45225237--45225300 Score: 67
Period size: 3 Copynumber: 21.3 Consensus size: 3
45225227 ATATAAAAGT
* * *
45225237 ATA ATG ATA ATA ATA TATA ATA ATA ATA ATA ATA ACA ATA ACA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
45225283 ACA ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA A
45225301 ATTAAAAACC
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
2 2 0.04
3 44 0.90
4 3 0.06
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:45226831 original size:50 final size:50
Alignment explanation
Indices: 45226776--45227206 Score: 297
Period size: 50 Copynumber: 8.6 Consensus size: 50
45226766 CTAAGGAGGT
* **
45226776 AAGATCCGTCGTTGTGGTTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
1 AAGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
* * ** * * * * * **
45226826 CAGATCCGCTGTTGTGACTTCAATCTACTTCACTGCACTGCCAGGGAAGT
1 AAGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
* * *
45226876 AAGATCCGCTGTTGTGGCTTCAATCTTTTTAATTACGCTGTCGGGGAAAC
1 AAGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
* * * *** ** * * * * * **
45226926 CAGATCTGCCGTTGTAACTTCAATCAGCTCCACTGCACCGCCAGGGAAGT
1 AAGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
*
45226976 AAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
1 AAGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
* * ** ** * ** * * * **
45227026 TAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGTACCGCCAGGGAAGT
1 AAGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
* *
45227076 AAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
1 AAGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
* * * * * * * * * **
45227126 CAGATCTGCCGTTGTGACTTCAATCTGCTCT-ACTGCACCGCCAGGGAAGT
1 AAGATCCGCCGTTGTGACTTCAATCT-TTTTAATTGCGCTGTCGGGGAAAC
*
45227176 AAGATCCGCCGTTGTGGCTTCAATCTTTTTA
1 AAGATCCGCCGTTGTGACTTCAATCTTTTTA
45227207 CTGTACTGTC
Statistics
Matches: 270, Mismatches: 109, Indels: 4
0.70 0.28 0.01
Matches are distributed among these distances:
49 2 0.01
50 266 0.99
51 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (50 bp):
AAGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCGGGGAAAC
Found at i:45226847 original size:100 final size:100
Alignment explanation
Indices: 45226714--45227206 Score: 754
Period size: 100 Copynumber: 4.9 Consensus size: 100
45226704 CCAATTACAA
* * * * * * * * *
45226714 TGTCGAGGAAACAAGATCCGCCGTCGT-AGCTTCAATCTGTTCAACTGCACCGCTAAGGAGGTAA
1 TGTCGGGGAAACCAGATCTGCCGTTGTGA-CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAA
* *
45226778 GATCCGTCGTTGTGGTTTCAATCTTTTTAATTGCGC
65 GATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
* * * * *
45226814 TGTCGGGGAAACCAGATCCGCTGTTGTGACTTCAATCTACTTCACTGCACTGCCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
* *
45226879 ATCCGCTGTTGTGGCTTCAATCTTTTTAATTACGC
66 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
* *
45226914 TGTCGGGGAAACCAGATCTGCCGTTGTAACTTCAATCAGCTCCACTGCACCGCCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
45226979 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
66 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
* *
45227014 TGTCGGGGAAACTAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGTACCGCCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
*
45227079 ATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGC
66 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
*
45227114 TGTCGGGGAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCTACTGCACCGCCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
45227179 ATCCGCCGTTGTGGCTTCAATCTTTTTA
66 ATCCGCCGTTGTGGCTTCAATCTTTTTA
45227207 CTGTACTGTC
Statistics
Matches: 358, Mismatches: 34, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
100 357 1.00
101 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (100 bp):
TGTCGGGGAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
Found at i:45227330 original size:88 final size:88
Alignment explanation
Indices: 45227229--45228605 Score: 2001
Period size: 88 Copynumber: 15.6 Consensus size: 88
45227219 GGTAATAAGA
* ** * * * *
45227229 CTGGTGTCTTCGATCTGCTTAACCGTCAGTACAGGAATGTAAGATCTGCCATTTTCAACCTACTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
*
45227294 CACTACTACCCAGGGAGACAAGG
66 CACTACTGCCCAGGGAGACAAGG
* ** *
45227317 CTGGTATCTTCGATCTACTTCTTTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTGCTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
** *
45227382 TGCTACTGCCCAGTGAGACAAGG
66 CACTACTGCCCAGGGAGACAAGG
* * * *
45227405 CTGGTATATTCGATCTGTTTCTCTGTCAGTATAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
*
45227470 CACTACTACCCAGGGAGACAAGG
66 CACTACTGCCCAGGGAGACAAGG
* *
45227493 CTGG-ATCTTCGATCTGCTTCGTTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTGCTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
* *
45227557 CGCTACTGCCCAGGGATACAAGG
66 CACTACTGCCCAGGGAGACAAGG
* * * ** *
45227580 CTGGTATCTTCGATCTGCTTCGCTGTTAGTATAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
* * ** * * *
45227645 CGCTGCAAACTCAGGAAGGCAAGG
66 CACTAC-TGCCCAGGGAGACAAGG
* * *
45227669 CT-GAAGTCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTGCT
1 CTGGTA-TCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACT
**
45227733 CTGCTACTGCCCAGGGAGACAAGG
65 CCACTACTGCCCAGGGAGACAAGG
* *
45227757 CTGGTATCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTGCTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
* *
45227822 CGCTACTGCCCAGGGAGACAAAG
66 CACTACTGCCCAGGGAGACAAGG
* *
45227845 CTGGTATCTTCGATCTGCTTCTCTGCCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
45227910 CACTACTGCCCAGGGAGACAAGG
66 CACTACTGCCCAGGGAGACAAGG
*
45227933 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCT-CTCATTCTCAACCTACT
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCT-ATTTTCAACCTACT
45227997 CCACTACTGCCCAGGGAGACAAGG
65 CCACTACTGCCCAGGGAGACAAGG
* * * *
45228021 CTGGTATCTTTGATCTGCTTCGCTGTCAATACAGGAATGCAAGATCTGCTATTTTCAACCTGCTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
* * *
45228086 CGCTACTACCCAGGGAGACAATG
66 CACTACTGCCCAGGGAGACAAGG
* *
45228109 CTAGTATCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTG-TCATTTTCAACCTACT
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCT-ATTTTCAACCTACT
*
45228173 CCACTACTGCCTAGGGAGACAAGG
65 CCACTACTGCCCAGGGAGACAAGG
45228197 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
45228262 CACTACTGCCCAGGGAGACAAGG
66 CACTACTGCCCAGGGAGACAAGG
*
45228285 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCT-CTCATTCTCAACCTACT
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCT-ATTTTCAACCTACT
45228349 CCACTACTGCCCAGGGAGACAAGG
65 CCACTACTGCCCAGGGAGACAAGG
* * * * *
45228373 CTGATATCTTTGATCTGCTTCGCTGTCAATACAGGAATGCAAGATCTGCTATTTTCAACCTGCTC
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
* * *
45228438 CGCTACTACCCAGGGAGACAATG
66 CACTACTGCCCAGGGAGACAAGG
* *
45228461 CTAGTATCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTG-TCATTTTCAACCTACT
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCT-ATTTTCAACCTACT
*
45228525 CCACTACTGCCTAGGGAGACAAGG
65 CCACTACTGCCCAGGGAGACAAGG
* *
45228549 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCA
1 CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCA
45228606 GTCTGCTCCG
Statistics
Matches: 1159, Mismatches: 118, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
87 84 0.07
88 997 0.86
89 78 0.07
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (88 bp):
CTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTC
CACTACTGCCCAGGGAGACAAGG
Found at i:45229288 original size:37 final size:37
Alignment explanation
Indices: 45229238--45229313 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
45229228 GGATAGTCTC
45229238 AATTTAGACCTTTCCTTCCCAGATATTTCAACCGTTA
1 AATTTAGACCTTTCCTTCCCAGATATTTCAACCGTTA
*
45229275 AATTTAGACCTTTCCTTCCCAGATATTTCAACCTTTA
1 AATTTAGACCTTTCCTTCCCAGATATTTCAACCGTTA
45229312 AA
1 AA
45229314 CTTGGTGCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (37 bp):
AATTTAGACCTTTCCTTCCCAGATATTTCAACCGTTA
Found at i:45229931 original size:7 final size:7
Alignment explanation
Indices: 45229907--45229954 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
45229897 AGACTCTCCA
45229907 TTTTTACT
1 TTTTTA-T
*
45229915 TTTTCCAT
1 TTTT-TAT
45229923 TTTTTAT
1 TTTTTAT
45229930 TTTTTAT
1 TTTTTAT
*
45229937 TTTTCA-
1 TTTTTAT
45229943 TTTTTAT
1 TTTTTAT
45229950 TTTTT
1 TTTTT
45229955 CACGTCTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
6 5 0.15
7 19 0.56
8 9 0.26
9 1 0.03
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTAT
Found at i:45229931 original size:22 final size:19
Alignment explanation
Indices: 45229906--45229953 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 19
45229896 TAGACTCTCC
45229906 ATTTTTACTTTTTCCATTTTTT
1 ATTTTTA-TTTTT-CA-TTTTT
45229928 ATTTTTTATTTTTCATTTTT
1 A-TTTTTATTTTTCATTTTT
45229948 ATTTTT
1 ATTTTT
45229954 TCACGTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 5 0.20
20 6 0.24
21 2 0.08
22 6 0.24
23 6 0.24
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (19 bp):
ATTTTTATTTTTCATTTTT
Found at i:45229939 original size:21 final size:20
Alignment explanation
Indices: 45229915--45229954 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
45229905 CATTTTTACT
45229915 TTTTCCATTTTTTATTTTTTA
1 TTTTCCA-TTTTTATTTTTTA
*
45229936 TTTTTCATTTTTATTTTTT
1 TTTTCCATTTTTATTTTTT
45229955 CACGTCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTCCATTTTTATTTTTTA
Found at i:45229947 original size:14 final size:13
Alignment explanation
Indices: 45229921--45229954 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
45229911 TACTTTTTCC
45229921 ATTTTTTATTTTTT
1 ATTTTTTA-TTTTT
*
45229935 ATTTTTCATTTTT
1 ATTTTTTATTTTT
45229948 ATTTTTT
1 ATTTTTT
45229955 CACGTCTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (13 bp):
ATTTTTTATTTTT
Found at i:45230454 original size:1 final size:1
Alignment explanation
Indices: 45230448--45230536 Score: 70
Period size: 1 Copynumber: 89.0 Consensus size: 1
45230438 TCGGTAGAGG
* * * * * * * * *
45230448 TTTTTTTTGTTTTTGTTTTTATTTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* **
45230513 TTTTTTCTTTTTTCCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTT
45230537 GCATTGAATC
Statistics
Matches: 66, Mismatches: 22, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 66 1.00
ACGTcount: A:0.08, C:0.03, G:0.02, T:0.87
Consensus pattern (1 bp):
T
Found at i:45230487 original size:21 final size:21
Alignment explanation
Indices: 45230463--45230516 Score: 83
Period size: 21 Copynumber: 2.5 Consensus size: 21
45230453 TTTGTTTTTG
45230463 TTTTTATTTTTATTTTTTA-T
1 TTTTTATTTTTATTTTTTATT
45230483 TTTTTATTTTTTATTTTTTATTT
1 TTTTTA-TTTTTATTTTTTA-TT
45230506 TTTTTATTTTT
1 TTTTTATTTTT
45230517 TTCTTTTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 6 0.19
21 13 0.42
22 5 0.16
23 7 0.23
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (21 bp):
TTTTTATTTTTATTTTTTATT
Found at i:45230523 original size:14 final size:13
Alignment explanation
Indices: 45230448--45230536 Score: 83
Period size: 14 Copynumber: 6.7 Consensus size: 13
45230438 TCGGTAGAGG
45230448 TTTTTTTTGTTTT-
1 TTTTTTTT-TTTTA
*
45230461 TGTTTTTATTTTTA
1 T-TTTTTTTTTTTA
45230475 TTTTTTATTTTTTA
1 TTTTTT-TTTTTTA
45230489 TTTTTTATTTTTTA
1 TTTTTT-TTTTTTA
*
45230503 TTTTTTTTATTT-
1 TTTTTTTTTTTTA
* **
45230515 TTTTCTTTTTTCC
1 TTTTTTTTTTTTA
45230528 TTTTTTTTT
1 TTTTTTTTT
45230537 GCATTGAATC
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
12 9 0.14
13 23 0.35
14 33 0.51
ACGTcount: A:0.08, C:0.03, G:0.02, T:0.87
Consensus pattern (13 bp):
TTTTTTTTTTTTA
Found at i:45230526 original size:7 final size:7
Alignment explanation
Indices: 45230463--45230508 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
45230453 TTTGTTTTTG
45230463 TTTTTA-
1 TTTTTAT
45230469 TTTTTAT
1 TTTTTAT
45230476 TTTTTAT
1 TTTTTAT
45230483 TTTTTAT
1 TTTTTAT
45230490 TTTTTAT
1 TTTTTAT
45230497 TTTTTAT
1 TTTTTAT
45230504 TTTTT
1 TTTTT
45230509 TTATTTTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
6 6 0.15
7 33 0.85
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTAT
Found at i:45230531 original size:16 final size:14
Alignment explanation
Indices: 45230448--45230536 Score: 83
Period size: 15 Copynumber: 6.2 Consensus size: 14
45230438 TCGGTAGAGG
*
45230448 TTTTTTT-TGTTTT
1 TTTTTTTATTTTTT
*
45230461 TGTTTTTA-TTTTT
1 TTTTTTTATTTTTT
*
45230474 ATTTTTTATTTTTT
1 TTTTTTTATTTTTT
*
45230488 ATTTTTTATTTTTTAT
1 TTTTTTTA-TTTTT-T
45230504 TTTTTTTATTTTTT
1 TTTTTTTATTTTTT
*
45230518 TCTTTTTTCCTTTTTT
1 T-TTTTTT-ATTTTTT
45230534 TTT
1 TTT
45230537 GCATTGAATC
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
13 16 0.25
14 15 0.23
15 18 0.28
16 15 0.23
ACGTcount: A:0.08, C:0.03, G:0.02, T:0.87
Consensus pattern (14 bp):
TTTTTTTATTTTTT
Found at i:45235275 original size:3 final size:3
Alignment explanation
Indices: 45235261--45235330 Score: 79
Period size: 3 Copynumber: 23.3 Consensus size: 3
45235251 ATATAAAAGT
* *
45235261 ATA ATG ATA ATA ATA TATA ATA ATA ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
45235307 ACA ATA ACA ATA TTA ATA A-A ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
45235331 ATTAAAAACC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
2 2 0.04
3 50 0.91
4 3 0.05
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:45244858 original size:3 final size:3
Alignment explanation
Indices: 45244850--45244901 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
45244840 TGTTTATTTA
* *
45244850 TAT TAT TAT TAG T-T TAA TAT TAT TA- TAT TAT TA- TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
45244893 TAT TAT TAT
1 TAT TAT TAT
45244902 ATTTACTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 5 0.12
3 33 0.80
4 3 0.07
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:45244872 original size:22 final size:22
Alignment explanation
Indices: 45244808--45244901 Score: 61
Period size: 22 Copynumber: 4.2 Consensus size: 22
45244798 CCTTAATTTG
* **
45244808 TTATTTTTAGTTTTTTATTATA
1 TTATTATTAGTTTAATATTATA
* *
45244830 TTGTTAATACTGTTT-AT-TTATA
1 TTATTATTA--GTTTAATATTATA
45244852 TTATTATTAGTTTAATATTAT-
1 TTATTATTAGTTTAATATTATA
45244873 TATATTATTA-TATTATATATTATTA
1 T-TATTATTAGT-TTA-ATATTA-TA
45244898 TTAT
1 TTAT
45244902 ATTTACTTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 16
0.72 0.08 0.20
Matches are distributed among these distances:
20 4 0.07
21 4 0.07
22 33 0.58
23 7 0.12
24 8 0.14
25 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (22 bp):
TTATTATTAGTTTAATATTATA
Found at i:45244877 original size:8 final size:8
Alignment explanation
Indices: 45244847--45244904 Score: 64
Period size: 8 Copynumber: 6.9 Consensus size: 8
45244837 TACTGTTTAT
45244847 TTATATTA
1 TTATATTA
45244855 TTATTAGTT-
1 TTA-TA-TTA
*
45244864 TAATATTA
1 TTATATTA
45244872 TTATATTA
1 TTATATTA
45244880 TTATATTA
1 TTATATTA
45244888 TATATTATTA
1 T-TA-TATTA
45244898 TTATATT
1 TTATATT
45244905 TACTTATATG
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
7 2 0.05
8 25 0.58
9 8 0.19
10 8 0.19
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (8 bp):
TTATATTA
Found at i:45244913 original size:23 final size:23
Alignment explanation
Indices: 45244847--45244898 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 23
45244837 TACTGTTTAT
45244847 TTATATTATTATTAGTT-TAATATTA
1 TTATATTATTA-TA-TTAT-ATATTA
45244872 TTATATTATTATATTATATATTA
1 TTATATTATTATATTATATATTA
45244895 TTAT
1 TTAT
45244899 TATATTTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 12 0.46
24 3 0.12
25 11 0.42
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
TTATATTATTATATTATATATTA
Found at i:45253825 original size:50 final size:50
Alignment explanation
Indices: 45253771--45254096 Score: 206
Period size: 50 Copynumber: 6.5 Consensus size: 50
45253761 CCTATCTCTT
* * *
45253771 TGGCATTACAGTGGAACGGATTGAAGCCACAACGACGAATCTTGTTTCCC
1 TGGCATTGCAGTGGAACAGATTGAAGCCACAACGGCGAATCTTGTTTCCC
* ** * * *
45253821 TGGCAATGTTGTGGAACAGATTGAAGCTACGACGGCGGAT-TTGGTTTCCC
1 TGGCATTGCAGTGGAACAGATTGAAGCCACAACGGCGAATCTT-GTTTCCC
* * ** * **
45253871 CGACATTGCAGTTAAAAAGATTGAAGCCACAACGGC-AGATCTTACTTCCC
1 TGGCATTGCAGTGGAACAGATTGAAGCCACAACGGCGA-ATCTTGTTTCCC
** * * * * *
45253921 TGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCC
1 TGGCATTGCAGTGGAACAGATTGAAGCCACAACGGCGAATCTTGTTTCCC
* * * ** * * * ***
45253971 CGACATTGCAATTTAAAAGATTAAAGCCACAACGACGAATCTTACCTCCC
1 TGGCATTGCAGTGGAACAGATTGAAGCCACAACGGCGAATCTTGTTTCCC
** * * * * * *
45254021 TGGCGGTGTAGTGGAATAGATTGAAGTCGCGACGGTGAATCTTGTTTCCC
1 TGGCATTGCAGTGGAACAGATTGAAGCCACAACGGCGAATCTTGTTTCCC
* ** *
45254071 TGACATTGCAGTTAAACAAATTGAAG
1 TGGCATTGCAGTGGAACAGATTGAAG
45254097 TAAATAATCC
Statistics
Matches: 192, Mismatches: 80, Indels: 8
0.69 0.29 0.03
Matches are distributed among these distances:
49 2 0.01
50 188 0.98
51 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (50 bp):
TGGCATTGCAGTGGAACAGATTGAAGCCACAACGGCGAATCTTGTTTCCC
Found at i:45253966 original size:100 final size:100
Alignment explanation
Indices: 45253789--45254096 Score: 415
Period size: 100 Copynumber: 3.1 Consensus size: 100
45253779 CAGTGGAACG
** ** *
45253789 GATTGAAGCCACAACGACGAATCTTGTTTCCCTGGCAATGTTGTGGAACAGATTGAAGCTACGAC
1 GATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGAC
*
45253854 GGCGGATTTGGTTTCCCCGACATTGCAGTTAAAAA
66 GGCGGATCTGGTTTCCCCGACATTGCAGTTAAAAA
*
45253889 GATTGAAGCCACAACGGC-AGATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 GATTGAAGCCACAACGACGA-ATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
* *
45253953 CGGCGGATCTGGTTTCCCCGACATTGCAATTTAAAA
65 CGGCGGATCTGGTTTCCCCGACATTGCAGTTAAAAA
* * * *
45253989 GATTAAAGCCACAACGACGAATCTTACCTCCCTGGCGGTGTAGTGGAATAGATTGAAG-TCGCGA
1 GATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCT-ACGA
* * * *
45254053 CGGTGAATCTTGTTTCCCTGACATTGCAGTTAAACAA
65 CGGCGGATCTGGTTTCCCCGACATTGCAGTTAAA-AA
45254090 -ATTGAAG
1 GATTGAAG
45254097 TAAATAATCC
Statistics
Matches: 183, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
99 2 0.01
100 178 0.97
101 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (100 bp):
GATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGAC
GGCGGATCTGGTTTCCCCGACATTGCAGTTAAAAA
Found at i:45254254 original size:82 final size:82
Alignment explanation
Indices: 45254138--45254342 Score: 243
Period size: 82 Copynumber: 2.5 Consensus size: 82
45254128 GAGCGGATCA
* * * * * * *
45254138 AAATGATAGATCTCATCTCTCTGATGTTGCAGTAGAGCAGATTGTATCAGACTCATGTTTAAAGT
1 AAATGACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAACTCATGTTTAAAAT
*
45254203 TGCAGTGGAATAAGTTG
66 TGCAGTAGAATAAGTTG
* *
45254220 AAATGACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAACTTATTTTTAAAAT
1 AAATGACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAACTCATGTTTAAAAT
45254285 TGCAGTAGAATAAGTTG
66 TGCAGTAGAATAAGTTG
* * * * *
45254302 AAGCT-ACA-AGTCTTATCTCCCTGAAATTGAAGTGGAGCAGA
1 AA-ATGACAGA-TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
45254343 CTAAAGATAG
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
81 1 0.01
82 104 0.98
83 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (82 bp):
AAATGACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAACTCATGTTTAAAAT
TGCAGTAGAATAAGTTG
Found at i:45255528 original size:3 final size:3
Alignment explanation
Indices: 45255520--45255570 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
45255510 TGTTTATTTA
* *
45255520 TAT TAT TAT TAG T-T TAA TAT TAT TA- TAT TAT TAT ATAT ATAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT
45255565 TAT TAT
1 TAT TAT
45255571 ATTTACTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 3 0.07
3 31 0.76
4 7 0.17
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:45255542 original size:22 final size:22
Alignment explanation
Indices: 45255478--45255570 Score: 59
Period size: 22 Copynumber: 4.2 Consensus size: 22
45255468 CCTTAATTTG
* **
45255478 TTATTTTTAGTTTTTTATTATA
1 TTATTATTAGTTTAATATTATA
* *
45255500 TTGTTAATACTGTTT-AT-TTATA
1 TTATTATTA--GTTTAATATTATA
45255522 TTATTATTAGTTTAATATTAT-
1 TTATTATTAGTTTAATATTATA
*
45255543 TATATTATTA-TATATATATTATTA
1 T-TATTATTAGTTTA-ATATTA-TA
45255567 TTAT
1 TTAT
45255571 ATTTACTTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
20 4 0.07
21 6 0.11
22 36 0.64
23 5 0.09
24 5 0.09
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.63
Consensus pattern (22 bp):
TTATTATTAGTTTAATATTATA
Found at i:45255545 original size:25 final size:25
Alignment explanation
Indices: 45255517--45255582 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
45255507 TACTGTTTAT
*
45255517 TTATATTATTAT-TAGTTTAATATTA
1 TTATATTATTATATA-TATAATATTA
*
45255542 TTATATTATTATATATATATTATTA
1 TTATATTATTATATATATAATATTA
45255567 TTATATTTACTTATAT
1 TTATA-TTA-TTATAT
45255583 GCGCATATGC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
25 25 0.69
26 5 0.14
27 6 0.17
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (25 bp):
TTATATTATTATATATATAATATTA
Found at i:45255573 original size:22 final size:21
Alignment explanation
Indices: 45255518--45255573 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 21
45255508 ACTGTTTATT
45255518 TATATTATTATTAGT-TTAATA
1 TATATTATTATTA-TATTAATA
45255539 T-TATTA-TA-T-TATTATATA
1 TATATTATTATTATATTA-ATA
45255557 TATATTATTATTATATT
1 TATATTATTATTATATT
45255574 TACTTATATG
Statistics
Matches: 29, Mismatches: 0, Indels: 11
0.73 0.00 0.28
Matches are distributed among these distances:
16 1 0.03
17 3 0.10
18 5 0.17
19 7 0.24
20 7 0.24
21 2 0.07
22 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
TATATTATTATTATATTAATA
Found at i:45261821 original size:22 final size:22
Alignment explanation
Indices: 45261788--45261860 Score: 98
Period size: 22 Copynumber: 3.4 Consensus size: 22
45261778 GTTTTTTTAA
45261788 TTTCT-ATTTATTTTTTAGAAT
1 TTTCTAATTTATTTTTTAGAAT
*
45261809 TTTCTAATTTATTTTTTATAAT
1 TTTCTAATTTATTTTTTAGAAT
*
45261831 TTTCTAATTT-TTTTATAAGAA-
1 TTTCTAATTTATTTT-TTAGAAT
45261852 TTTCTAATT
1 TTTCTAATT
45261861 AGTTTCTAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
21 18 0.38
22 29 0.62
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (22 bp):
TTTCTAATTTATTTTTTAGAAT
Found at i:45261856 original size:43 final size:41
Alignment explanation
Indices: 45261779--45261860 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 41
45261769 ATATTTTAAG
*
45261779 TTTTTTTAATTTCTATTTATTTTTTAGAATTTTCTAATTTA
1 TTTTTTTAATTTCTATTTATTTTTAAGAATTTTCTAATTTA
45261820 TTTTTTATAATTTTCTAATTT-TTTTATAAGAA-TTTCTAATT
1 TTTTTT-TAA-TTTCT-ATTTATTTT-TAAGAATTTTCTAATT
45261861 AGTTTCTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
41 6 0.17
42 3 0.08
43 18 0.50
44 9 0.25
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (41 bp):
TTTTTTTAATTTCTATTTATTTTTAAGAATTTTCTAATTTA
Found at i:45262085 original size:16 final size:16
Alignment explanation
Indices: 45262063--45262131 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
45262053 TTTGGTTCGC
45262063 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
45262079 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
45262095 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
45262112 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
45262128 TGTA
1 TGTA
45262132 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:45262109 original size:33 final size:32
Alignment explanation
Indices: 45262063--45262131 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
45262053 TTTGGTTCGC
45262063 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
45262095 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
45262128 TGTA
1 TGTA
45262132 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:45262386 original size:18 final size:17
Alignment explanation
Indices: 45262365--45262399 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45262355 TTATTATTAA
*
45262365 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
45262383 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
45262400 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:45262535 original size:118 final size:119
Alignment explanation
Indices: 45262348--45262607 Score: 488
Period size: 118 Copynumber: 2.2 Consensus size: 119
45262338 ATCATATTTA
45262348 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
45262413 ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGT-AAATATAAATT
66 ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
45262466 AACATAATTATTATTAAATATATTTTAATTAAACTATATAA-TTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
45262530 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 -ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
45262585 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
45262608 AACTTGAAAA
Statistics
Matches: 139, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
117 23 0.17
118 82 0.59
119 34 0.24
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (119 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:45274532 original size:1 final size:1
Alignment explanation
Indices: 45274526--45274627 Score: 132
Period size: 1 Copynumber: 102.0 Consensus size: 1
45274516 NNNNNNNNNN
* * * * *
45274526 AAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAAAAAAAAAAAATAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** *
45274591 AAAAAAAAAATTAAAAAATAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
45274628 CAAGAAGATA
Statistics
Matches: 87, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 87 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (1 bp):
A
Found at i:45275734 original size:22 final size:18
Alignment explanation
Indices: 45275690--45275731 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
45275680 TAATTTAGGT
45275690 CAATTATACATACACCAA
1 CAATTATACATACACCAA
45275708 CAATTATACATACACCAA
1 CAATTATACATACACCAA
45275726 CAATTA
1 CAATTA
45275732 ATTTTAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (18 bp):
CAATTATACATACACCAA
Found at i:45275791 original size:33 final size:33
Alignment explanation
Indices: 45275708--45275817 Score: 152
Period size: 33 Copynumber: 3.3 Consensus size: 33
45275698 CATACACCAA
45275708 CAATTATACATACACCAACAATTAATTTTAGGGT
1 CAATTATACATACACCAACAATTAATTTTA-GGT
* * * *
45275742 -AAATA-AAATAAAACCAAGAATTAATTTTAGGT
1 CAATTATACAT-ACACCAACAATTAATTTTAGGT
45275774 CAATTATACATACACCAACAATTAATTTTAGGT
1 CAATTATACATACACCAACAATTAATTTTAGGT
45275807 CAATTATACAT
1 CAATTATACAT
45275818 GCTTTATAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
32 6 0.09
33 56 0.86
34 3 0.05
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
CAATTATACATACACCAACAATTAATTTTAGGT
Found at i:45278931 original size:119 final size:117
Alignment explanation
Indices: 45278795--45279052 Score: 457
Period size: 119 Copynumber: 2.2 Consensus size: 117
45278785 ATTTTCAAGT
45278795 TATATATTAATAATAATTATGTTAATTTATATTTTACAGTATCATATA-TATGATTTGAGTAAAT
1 TATAT-TTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
45278859 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAAA
65 T-ATATAAGAAT-TTAATTATTAAGAA-TTTATTAAATTATATAGTTTAATTAAAA
45278915 TATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATT
1 TATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATT
*
45278980 ATATAAGAATTTAATTATTAAGAATTTATTAAATTATATATTTTAATTAAAA
66 ATATAAGAATTTAATTATTAAGAATTTATTAAATTATATAGTTTAATTAAAA
45279032 TATA-TTAATAATAATTATGTT
1 TATATTTAATAATAATTATGTT
45279053 TAAATATGAT
Statistics
Matches: 136, Mismatches: 1, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
116 17 0.12
117 31 0.23
118 14 0.10
119 52 0.38
120 22 0.16
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (117 bp):
TATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATT
ATATAAGAATTTAATTATTAAGAATTTATTAAATTATATAGTTTAATTAAAA
Found at i:45279003 original size:15 final size:16
Alignment explanation
Indices: 45278976--45279007 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
45278966 GATTTGAGTA
45278976 AATTATATAAGAATTT
1 AATTATATAAGAATTT
45278992 AATTAT-TAAGAATTT
1 AATTATATAAGAATTT
45279007 A
1 A
45279008 TTAAATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
AATTATATAAGAATTT
Found at i:45279264 original size:43 final size:44
Alignment explanation
Indices: 45279200--45279288 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 44
45279190 ACCTCTATTC
* * *
45279200 CATTCAACCAAACACAAGATTA-CATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCATTACACCTCTAATCCAATA
*** *
45279243 CATTCAACCAAACAGTGGATTAGCTTTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCATTACACCTCTAATCCAATA
45279287 CA
1 CA
45279289 CCTCTAATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 19 0.50
44 19 0.50
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTAGCATTACACCTCTAATCCAATA
Found at i:45279290 original size:16 final size:16
Alignment explanation
Indices: 45279269--45279336 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
45279259 GGATTAGCTT
45279269 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
45279285 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
45279302 -ACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
45279317 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
45279333 TACA
1 TACA
45279337 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
15 4 0.08
16 40 0.83
17 4 0.08
ACGTcount: A:0.37, C:0.38, G:0.01, T:0.24
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:45279563 original size:19 final size:19
Alignment explanation
Indices: 45279539--45279598 Score: 81
Period size: 20 Copynumber: 3.2 Consensus size: 19
45279529 ATAAAATCTT
45279539 AAAAAAATAGAAAATTAAAA
1 AAAAAAATAGAAAATT-AAA
45279559 AAAAAAATAGAAAATCT-AA
1 AAAAAAATAGAAAAT-TAAA
45279578 AAAAAAATAG-AAA-TAAA
1 AAAAAAATAGAAAATTAAA
45279595 AAAA
1 AAAA
45279599 CTTAAAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.03
17 6 0.16
18 3 0.08
19 12 0.32
20 15 0.39
21 1 0.03
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.13
Consensus pattern (19 bp):
AAAAAAATAGAAAATTAAA
Found at i:45279565 original size:21 final size:21
Alignment explanation
Indices: 45279539--45279584 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
45279529 ATAAAATCTT
45279539 AAAAAAATAGAAAAT-TAAAA
1 AAAAAAATAGAAAATCTAAAA
45279559 AAAAAAATAGAAAATCTAAAA
1 AAAAAAATAGAAAATCTAAAA
45279580 AAAAA
1 AAAAA
45279585 TAGAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.13
Consensus pattern (21 bp):
AAAAAAATAGAAAATCTAAAA
Found at i:45279583 original size:25 final size:25
Alignment explanation
Indices: 45279555--45279632 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
45279545 ATAGAAAATT
* *
45279555 AAAAAAAAAAATAGAAAATCTAAAA
1 AAAAAAAAAAATAAAAAAACTAAAA
* * *
45279580 AAAAATAGAAATAAAAAAACT-TAA
1 AAAAAAAAAAATAAAAAAACTAAAA
* * * *
45279604 AAAATATAAAATAAAAAAAATAAAT
1 AAAAAAAAAAATAAAAAAACTAAAA
45279629 AAAA
1 AAAA
45279633 TATTTAAAAA
Statistics
Matches: 40, Mismatches: 12, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
24 18 0.45
25 22 0.55
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (25 bp):
AAAAAAAAAAATAAAAAAACTAAAA
Found at i:45279615 original size:62 final size:65
Alignment explanation
Indices: 45279520--45279642 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 65
45279510 AAAAATAGAT
*
45279520 TAGAAACTAATAAAATCTTAAAAAAATAGAAAATTAAAAAAAA-AAATAGAAA-ATCTAAAAAAA
1 TAGAAACTAATAAAAACTTAAAAAAATAGAAAA-TAAAAAAAATAAATA-AAATATCTAAAAAAA
45279583 AA
64 AA
* *
45279585 TAGAAA-TAA-AAAAACTT-AAAAAATATAAAATAAAAAAAATAAATAAAATATTTAAAAA
1 TAGAAACTAATAAAAACTTAAAAAAATAGAAAATAAAAAAAATAAATAAAATATCTAAAAA
45279643 TTAAATTTTA
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
61 12 0.23
62 25 0.47
63 7 0.13
64 3 0.06
65 6 0.11
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (65 bp):
TAGAAACTAATAAAAACTTAAAAAAATAGAAAATAAAAAAAATAAATAAAATATCTAAAAAAAAA
Found at i:45279627 original size:23 final size:25
Alignment explanation
Indices: 45279577--45279634 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
45279567 AGAAAATCTA
*
45279577 AAAAAAAATAGAAATAAAAAAACTT
1 AAAAAAAATAGAAATAAAAAAACAT
*
45279602 AAAAAATATA-AAATAAAAAAA-AT
1 AAAAAAAATAGAAATAAAAAAACAT
*
45279625 AAATAAAATA
1 AAAAAAAATA
45279635 TTTAAAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 9 0.31
24 11 0.38
25 9 0.31
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (25 bp):
AAAAAAAATAGAAATAAAAAAACAT
Found at i:45279640 original size:36 final size:35
Alignment explanation
Indices: 45279577--45279667 Score: 85
Period size: 36 Copynumber: 2.5 Consensus size: 35
45279567 AGAAAATCTA
45279577 AAAAAAAATAGAAATAAAAAAACTTAAAAAATATAAA-AT
1 AAAAAAAAT--AAAT-AAAAAACTT-AAAAAT-TAAATAT
* * *
45279616 AAAAAAAATAAATAAAATATTTAAAAATTAAATTTT
1 AAAAAAAATAAATAAAAAACTTAAAAATTAAA-TAT
*
45279652 AAAAAATATAAATAAA
1 AAAAAAAATAAATAAA
45279668 TAATTACAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.09
35 6 0.13
36 23 0.50
37 4 0.09
39 9 0.20
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.24
Consensus pattern (35 bp):
AAAAAAAATAAATAAAAAACTTAAAAATTAAATAT
Found at i:45279689 original size:35 final size:36
Alignment explanation
Indices: 45279615--45279686 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
45279605 AAATATAAAA
* **
45279615 TAAAAAAAATAAATAAAATATTTAAAAATTAAATTT
1 TAAAAAAAATAAATAAAATAATTAAAAAACAAATTT
*
45279651 TAAAAAATATAAAT-AAATAATTACAAAAACAAATTT
1 TAAAAAAAATAAATAAAATAATTA-AAAAACAAATTT
45279687 AAAGTTCTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 8 0.26
36 23 0.74
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (36 bp):
TAAAAAAAATAAATAAAATAATTAAAAAACAAATTT
Found at i:45281646 original size:48 final size:48
Alignment explanation
Indices: 45281553--45281646 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
45281543 TGGGTATTAG
* * * *
45281553 TCATGTGCTTAATGATGTTCAGGATTCATAGTTATCTCTGAAACAATA
1 TCATGTGCTGAATGATATTCAGGATTCATAGTTATCCCTCAAACAATA
* *
45281601 TCATGTGCTGAATGATATTTAGGATTCATAGTTATCCCTCTAACAA
1 TCATGTGCTGAATGATATTCAGGATTCATAGTTATCCCTCAAACAA
45281647 CATTGTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (48 bp):
TCATGTGCTGAATGATATTCAGGATTCATAGTTATCCCTCAAACAATA
Found at i:45282862 original size:21 final size:21
Alignment explanation
Indices: 45282823--45282863 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45282813 TATACAAAGA
*
45282823 ATAATAACAAATAGTAGCAAG
1 ATAATAACAAATAGAAGCAAG
45282844 ATAATAACAAAATA-AAGCAA
1 ATAATAAC-AAATAGAAGCAA
45282864 AATTTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.63, C:0.10, G:0.10, T:0.17
Consensus pattern (21 bp):
ATAATAACAAATAGAAGCAAG
Found at i:45285572 original size:17 final size:18
Alignment explanation
Indices: 45285546--45285580 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
45285536 TATATTGGAT
45285546 TATAAGATATAGAAAATA
1 TATAAGATATAGAAAATA
*
45285564 TATAA-ATATATAAAATA
1 TATAAGATATAGAAAATA
45285581 CGAATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
TATAAGATATAGAAAATA
Found at i:45285729 original size:3 final size:3
Alignment explanation
Indices: 45285721--45285770 Score: 54
Period size: 3 Copynumber: 18.0 Consensus size: 3
45285711 ATAAGTAAAT
* *
45285721 ATA ATA ATA AT- ATA AT- ATA ATA AT- ATA ATA ATA TTA A-A CTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
45285765 ATA ATA
1 ATA ATA
45285771 TAAATAAACA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
2 7 0.18
3 32 0.82
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:45285729 original size:8 final size:8
Alignment explanation
Indices: 45285718--45285773 Score: 62
Period size: 8 Copynumber: 6.9 Consensus size: 8
45285708 CATATAAGTA
45285718 AATATAAT
1 AATATAAT
45285726 AATA-ATAT
1 AATATA-AT
45285734 AATATAAT
1 AATATAAT
45285742 AATATAAT
1 AATATAAT
45285750 AATATTAA-
1 AATA-TAAT
*
45285758 ACTAATAAT
1 AAT-ATAAT
45285767 AATATAA
1 AATATAA
45285774 ATAAACAGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
7 1 0.02
8 33 0.80
9 7 0.17
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (8 bp):
AATATAAT
Found at i:45285734 original size:11 final size:11
Alignment explanation
Indices: 45285718--45285773 Score: 58
Period size: 11 Copynumber: 4.6 Consensus size: 11
45285708 CATATAAGTA
45285718 AATATAATAAT
1 AATATAATAAT
45285729 AATATAATATAAT
1 AATAT-A-ATAAT
45285742 AATATAATAAT
1 AATATAATAAT
*
45285753 ATTAAACTAATAAT
1 A--ATA-TAATAAT
45285767 AATATAA
1 AATATAA
45285774 ATAAACAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
11 14 0.37
12 4 0.11
13 12 0.32
14 8 0.21
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (11 bp):
AATATAATAAT
Found at i:45285740 original size:13 final size:13
Alignment explanation
Indices: 45285724--45285750 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45285714 AGTAAATATA
45285724 ATAATAATATAAT
1 ATAATAATATAAT
45285737 ATAATAATATAAT
1 ATAATAATATAAT
45285750 A
1 A
45285751 ATATTAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATAATATAAT
Found at i:45287052 original size:82 final size:82
Alignment explanation
Indices: 45286942--45287139 Score: 231
Period size: 82 Copynumber: 2.4 Consensus size: 82
45286932 ACTATCTTAG
* * * * * *
45286942 TCTGCTCCACTTCAATTTCAGGGAGATAAGA-CTTGT-AGCTTCAACTTATTCTACTGCAATTTT
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATC-TGTCA-CTTCAACTTATTCCACTGCAACTTT
* *
45287005 AAAAATAAGT-TGATGCGA
64 AAAAATAAGTCTGATACAA
*
45287023 TCTGCTCTAACTGCAACTTCAGAGAGATAAGATCTGTCATTTCAACTTATTCCACTGCAACTTTA
1 TCTGCTCT-ACTGCAACTTCAGAGAGATAAGATCTGTCACTTCAACTTATTCCACTGCAACTTTA
* *
45287088 AACATGAGTCTGATACAA
65 AAAATAAGTCTGATACAA
* *
45287106 TCTGCTCTACTGCAACATCAGAGAGATGAGATCT
1 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCT
45287140 ATCATTTTGA
Statistics
Matches: 100, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
81 7 0.07
82 77 0.77
83 16 0.16
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (82 bp):
TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTCACTTCAACTTATTCCACTGCAACTTTAA
AAATAAGTCTGATACAA
Found at i:45287145 original size:82 final size:82
Alignment explanation
Indices: 45286981--45287146 Score: 235
Period size: 82 Copynumber: 2.0 Consensus size: 82
45286971 GACTTGTAGC
* * * * *
45286981 TTCAACTTATTCTACTGCAATTTTAAAAATAAGTTGATGCGATCTGCTCTAACTGCAACTTCAGA
1 TTCAACTTATTCCACTGCAACTTTAAAAATAAGTTGATACAATCTGCTCTAACTGCAACATCAGA
*
45287046 GAGATAAGATCTGTCAT
66 GAGATAAGATCTATCAT
* *
45287063 TTCAACTTATTCCACTGCAACTTTAAACATGAGTCTGATACAATCTGCTCT-ACTGCAACATCAG
1 TTCAACTTATTCCACTGCAACTTTAAAAATAAGT-TGATACAATCTGCTCTAACTGCAACATCAG
*
45287127 AGAGATGAGATCTATCAT
65 AGAGATAAGATCTATCAT
45287145 TT
1 TT
45287147 TGATCCGCTC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
82 60 0.81
83 14 0.19
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (82 bp):
TTCAACTTATTCCACTGCAACTTTAAAAATAAGTTGATACAATCTGCTCTAACTGCAACATCAGA
GAGATAAGATCTATCAT
Found at i:45287333 original size:100 final size:100
Alignment explanation
Indices: 45287188--45287495 Score: 406
Period size: 100 Copynumber: 3.1 Consensus size: 100
45287178 GGATTATTTA
* * * * * * *
45287188 CTTCAAT-TTGTTTAACTGCAATGTCAGGGAAACAAGATTCACCGTCG-CGACTTCAATCTATTC
1 CTTCAATCTT-TTAAACTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAG-CTTCAATCTGTTC
*
45287251 CACTACACCGCCAGGGAGGTAAGATTCGTCGTTGTGG
64 CACTACACCGCCAGGGAAGTAAGATTCGTCGTTGTGG
* *
45287288 CTTTAATCTTTTAAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTAAACTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
*
45287353 CTACACCGCCAGGGAAGTAAGA-TCTGCCGTTGTGG
66 CTACACCGCCAGGGAAGTAAGATTC-GTCGTTGTGG
* *
45287388 CTTCAATCTTTTTAACTGCAATGTCGGGGAAACCAAATCCGCCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTAAACTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
* ** **
45287453 CAACATTGCCAGGGAAACAAGATTCGTCGTTGTGG
66 CTACACCGCCAGGGAAGTAAGATTCGTCGTTGTGG
45287488 CTTCAATC
1 CTTCAATC
45287496 CGTTCCACTG
Statistics
Matches: 183, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
99 2 0.01
100 176 0.96
101 5 0.03
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (100 bp):
CTTCAATCTTTTAAACTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCA
CTACACCGCCAGGGAAGTAAGATTCGTCGTTGTGG
Found at i:45287368 original size:50 final size:50
Alignment explanation
Indices: 45287188--45287513 Score: 179
Period size: 50 Copynumber: 6.5 Consensus size: 50
45287178 GGATTATTTA
* ** * * * * *
45287188 CTTCAATTTGTTTAACTGCAATGTCAGGGAAACAAGATTCACCGTCG-CG
1 CTTCAATCTGTTCCACTACAATGCCAGGGAAACAAGATCCGCCGTCGTAG
* ** *** * * * *
45287237 ACTTCAATCTATTCCACTACACCGCCAGGGAGGTAAGATTCGTCGTTGTGG
1 -CTTCAATCTGTTCCACTACAATGCCAGGGAAACAAGATCCGCCGTCGTAG
* * ** * * * * *
45287288 CTTTAATCTTTTAAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCCACTACAATGCCAGGGAAACAAGATCCGCCGTCGTAG
** ** * * *
45287338 CTTCAATCTGTTCCACTACACCGCCAGGGAAGTAAGATCTGCCGTTGTGG
1 CTTCAATCTGTTCCACTACAATGCCAGGGAAACAAGATCCGCCGTCGTAG
* ** * * *
45287388 CTTCAATCTTTTTAACTGCAATGTCGGGGAAACCAA-ATCCGCCGTCGTAG
1 CTTCAATCTGTTCCACTACAATGCCAGGGAAA-CAAGATCCGCCGTCGTAG
* * * * * *
45287438 CTTCAATCTGTTCCACAACATTGCCAGGGAAACAAGATTCGTCGTTGTGG
1 CTTCAATCTGTTCCACTACAATGCCAGGGAAACAAGATCCGCCGTCGTAG
* **
45287488 CTTCAATCCGTTCCACTGTAATGCCA
1 CTTCAATCTGTTCCACTACAATGCCA
45287514 AAGAGATAGG
Statistics
Matches: 194, Mismatches: 79, Indels: 6
0.70 0.28 0.02
Matches are distributed among these distances:
49 3 0.02
50 188 0.97
51 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (50 bp):
CTTCAATCTGTTCCACTACAATGCCAGGGAAACAAGATCCGCCGTCGTAG
Found at i:45306191 original size:14 final size:15
Alignment explanation
Indices: 45306167--45306196 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
45306157 ATTTATTACT
45306167 AATACTTACTTCTAA
1 AATACTTACTTCTAA
45306182 AATA-TTACTTCTAA
1 AATACTTACTTCTAA
45306196 A
1 A
45306197 TTTATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (15 bp):
AATACTTACTTCTAA
Found at i:45306402 original size:13 final size:14
Alignment explanation
Indices: 45306386--45306417 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
45306376 AATTTATTTA
45306386 ATTACTTATA-ATT
1 ATTACTTATACATT
45306399 ATTAC-TATACATT
1 ATTACTTATACATT
45306412 ATTACT
1 ATTACT
45306418 AAATTTGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTACTTATACATT
Found at i:45306423 original size:52 final size:52
Alignment explanation
Indices: 45306327--45306434 Score: 148
Period size: 52 Copynumber: 2.1 Consensus size: 52
45306317 TACTTACTCA
** *
45306327 TATTTAATTTGTTTAATTATTACTAAATACATTACTTACTAATTTTTTAAATT
1 TATTTAATTACTTTAATTATTACT-AATACATTACTTACTAATTTGTTAAATT
45306380 TATTTAATTACTTATAATTATTACT-ATACATTA-TTACTAAATTTGTTAAATT
1 TATTTAATTACTT-TAATTATTACTAATACATTACTTACT-AATTTGTTAAATT
45306432 TAT
1 TAT
45306435 ACTTAAATAT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
51 5 0.10
52 23 0.46
53 11 0.22
54 11 0.22
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (52 bp):
TATTTAATTACTTTAATTATTACTAATACATTACTTACTAATTTGTTAAATT
Found at i:45306615 original size:64 final size:62
Alignment explanation
Indices: 45306547--45306681 Score: 148
Period size: 64 Copynumber: 2.1 Consensus size: 62
45306537 ATTTTTGTTT
*
45306547 ATGTTATCTA-AAGATAAAATAAAATATAAAAATATGTGGAATATTAAAATTGACTATT-AAATA
1 ATGTTATCTATAA-ATAAAATAAAATAAAAAAATATGTGGAATA-T-AAATTGACTATTAAAAT-
45306610 A
62 A
* * * * *
45306611 ATGTTATTTTATTAAATATATTTAATTAAAAAAATATGTGGAATATAAATTGACTATTAAAATA
1 ATGTTA-TCTA-TAAATAAAATAAAATAAAAAAATATGTGGAATATAAATTGACTATTAAAATA
45306675 ATGTTAT
1 ATGTTAT
45306682 TTTATTATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
63 1 0.02
64 25 0.41
65 8 0.13
66 25 0.41
67 2 0.03
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (62 bp):
ATGTTATCTATAAATAAAATAAAATAAAAAAATATGTGGAATATAAATTGACTATTAAAATA
Done.